RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3778
(1751 letters)
>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases. Protein Kinases
(PKs), catalytic (c) domain. PKs catalyze the transfer of
the gamma-phosphoryl group from ATP to serine/threonine
or tyrosine residues on protein substrates. The PK family
is part of a larger superfamily that includes the
catalytic domains of RIO kinases, aminoglycoside
phosphotransferase, choline kinase, phosphoinositide
3-kinase (PI3K), and actin-fragmin kinase. PKs make up a
large family of serine/threonine kinases, protein
tyrosine kinases (PTKs), and dual-specificity PKs that
phosphorylate both serine/threonine and tyrosine residues
of target proteins. Majority of protein phosphorylation,
about 95%, occurs on serine residues while only 1% occurs
on tyrosine residues. Protein phosphorylation is a
mechanism by which a wide variety of cellular proteins,
such as enzymes and membrane channels, are reversibly
regulated in response to certain stimuli. PKs often
function as components of signal transduction pathways in
which one kinase activates a second kinase, which in
turn, may act on other kinases; this sequential action
transmits a signal from the cell surface to target
proteins, which results in cellular responses. The PK
family is one of the largest known protein families with
more than 100 homologous yeast enzymes and 550 human
proteins. A fraction of PK family members are
pseudokinases that lack crucial residues for catalytic
activity. The mutiplicity of kinases allows for specific
regulation according to substrate, tissue distribution,
and cellular localization. PKs regulate many cellular
processes including proliferation, division,
differentiation, motility, survival, metabolism,
cell-cycle progression, cytoskeletal rearrangement,
immunity, and neuronal functions. Many kinases are
implicated in the development of various human diseases
including different types of cancer.
Length = 215
Score = 103 bits (258), Expect = 2e-24
Identities = 66/250 (26%), Positives = 108/250 (43%), Gaps = 67/250 (26%)
Query: 1325 IAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDML 1382
+ +G VY A + G + A+K++ ++S +L +E+ L+K LN
Sbjct: 1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELL----REIEILKK---LN---- 49
Query: 1383 MNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKK 1442
HPN+V ++ F D L+++M+
Sbjct: 50 ---------HPNIVKLYGVFED----------------------------ENHLYLVMEY 72
Query: 1443 Y-NTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNT 1501
L++ L+E +LS E + + Q+LEG+ +L+ + HRDLK +NILL D+
Sbjct: 73 CEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLHSNGIIHRDLKPENILL----DSD 128
Query: 1502 CPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDA 1560
++ + DFG S S S+ + + G A MAPEV L YS KSD
Sbjct: 129 NGKVKLADFGLSKLLTSDKSLLKT-----IVGTPAYMAPEV------LLGKGYYSEKSDI 177
Query: 1561 WTAGTVAYEI 1570
W+ G + YE+
Sbjct: 178 WSLGVILYEL 187
Score = 99.6 bits (249), Expect = 3e-23
Identities = 55/189 (29%), Positives = 87/189 (46%), Gaps = 46/189 (24%)
Query: 914 SLFILMKKY-NTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNIL 972
L+++M+ L++ L+E +LS E + + Q+LEG+ +L+ + HRDLK +NIL
Sbjct: 65 HLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLHSNGIIHRDLKPENIL 124
Query: 973 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV 1032
L D+ ++ + DFG S S S+ + + G A MAPEV L
Sbjct: 125 L----DSDNGKVKLADFGLSKLLTSDKSLLKT-----IVGTPAYMAPEV------LLGKG 169
Query: 1033 NYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLEN 1091
YS KSD W+ G + YE+ ++ L+ K+L+
Sbjct: 170 YYSEKSDIWSLGVILYEL-----------------------------PELKDLIRKMLQK 200
Query: 1092 DPSDRPSAE 1100
DP RPSA+
Sbjct: 201 DPEKRPSAK 209
Score = 54.6 bits (132), Expect = 6e-08
Identities = 55/269 (20%), Positives = 92/269 (34%), Gaps = 112/269 (41%)
Query: 119 IAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDML 176
+ +G VY A + G + A+K++ ++S +L+ E+ L+K LN
Sbjct: 1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLR----EIEILKK---LN---- 49
Query: 177 MNSVENLPPHPNVV--------------VMHFA----FTDFV----PSIPDSSLIY---- 210
HPN+V VM + D + + + ++
Sbjct: 50 ---------HPNIVKLYGVFEDENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQ 100
Query: 211 -------------------PK----DNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGG 247
P+ D+ ++ + DFG S S S+ + + G
Sbjct: 101 ILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKT-----IVG 155
Query: 248 NVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALP 306
A MAPEV L YS KSD W+ G + YE+
Sbjct: 156 TPAYMAPEV------LLGKGYYSEKSDIWSLGVILYEL---------------------- 187
Query: 307 QLNTNVPEVMRRLVAKLLENDPSDRPSAE 335
++ L+ K+L+ DP RPSA+
Sbjct: 188 -------PELKDLIRKMLQKDPEKRPSAK 209
Score = 54.6 bits (132), Expect = 6e-08
Identities = 55/269 (20%), Positives = 92/269 (34%), Gaps = 112/269 (41%)
Query: 560 IAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDML 617
+ +G VY A + G + A+K++ ++S +L+ E+ L+K LN
Sbjct: 1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLR----EIEILKK---LN---- 49
Query: 618 MNSVENLPPHPNVV--------------VMHFA----FTDFV----PSIPDSSLIY---- 651
HPN+V VM + D + + + ++
Sbjct: 50 ---------HPNIVKLYGVFEDENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQ 100
Query: 652 -------------------PK----DNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGG 688
P+ D+ ++ + DFG S S S+ + + G
Sbjct: 101 ILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKT-----IVG 155
Query: 689 NVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALP 747
A MAPEV L YS KSD W+ G + YE+
Sbjct: 156 TPAYMAPEV------LLGKGYYSEKSDIWSLGVILYEL---------------------- 187
Query: 748 QLNTNVPEVMRRLVAKLLENDPSDRPSAE 776
++ L+ K+L+ DP RPSA+
Sbjct: 188 -------PELKDLIRKMLQKDPEKRPSAK 209
>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic
domain. Phosphotransferases. Serine or
threonine-specific kinase subfamily.
Length = 254
Score = 101 bits (255), Expect = 1e-23
Identities = 71/349 (20%), Positives = 118/349 (33%), Gaps = 109/349 (31%)
Query: 1320 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 1377
+I + + +G+ VY A + G A+K++ K+ + + L
Sbjct: 2 EILEKLGEGSFGKVYLARDKKTGKLVAIKVI----------------KKKKIKKDRERIL 45
Query: 1378 NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLF 1437
E ++ ++ HPN+V ++ F D L+
Sbjct: 46 REIKILKKLK----HPNIVRLYDVFEDED----------------------------KLY 73
Query: 1438 ILMKKYNT-DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDC 1496
++M+ DL + L++R LS E Q+L + +L+ HRDLK +NILLD
Sbjct: 74 LVMEYCEGGDLFDLLKKRGR-LSEDEARFYLRQILSALEYLHSKGIVHRDLKPENILLD- 131
Query: 1497 SEDNTCPQLVITDFGSS-YTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 1555
ED + + DFG + + + G MAPEV L Y
Sbjct: 132 -EDGH---VKLADFGLARQLDPGEKLTTFV-------GTPEYMAPEVLLGKG-------Y 173
Query: 1556 S-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYWHRKWLWQHLVYSHSSTTPSTVAYEIFG 1614
D W+ G + YE+ PF + ++ G
Sbjct: 174 GKAVDIWSLGVILYELLTGKPPFP--GDDQLL---------------------ELFKKIG 210
Query: 1615 HDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 1663
P P ++ + L+ KLL DP R +AE
Sbjct: 211 KPKPP-------------FPPPEWDISPEAKDLIRKLLVKDPEKRLTAE 246
Score = 95.7 bits (239), Expect = 1e-21
Identities = 58/242 (23%), Positives = 88/242 (36%), Gaps = 63/242 (26%)
Query: 871 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNY 929
HPN+V ++ F D L+++M+ DL +
Sbjct: 56 HPNIVRLYDVFEDED----------------------------KLYLVMEYCEGGDLFDL 87
Query: 930 LRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDF 989
L++R LS E Q+L + +L+ HRDLK +NILLD ED + + DF
Sbjct: 88 LKKRGR-LSEDEARFYLRQILSALEYLHSKGIVHRDLKPENILLD--EDGH---VKLADF 141
Query: 990 GSS-YTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAY 1047
G + + + G MAPEV L Y D W+ G + Y
Sbjct: 142 GLARQLDPGEKLTTFV-------GTPEYMAPEVLLGKG-------YGKAVDIWSLGVILY 187
Query: 1048 EIFGHDNPF---------YQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS 1098
E+ PF ++ P ++ + L+ KLL DP R +
Sbjct: 188 ELLTGKPPFPGDDQLLELFKKIGKPKPP---FPPPEWDISPEAKDLIRKLLVKDPEKRLT 244
Query: 1099 AE 1100
AE
Sbjct: 245 AE 246
Score = 54.1 bits (131), Expect = 1e-07
Identities = 28/133 (21%), Positives = 44/133 (33%), Gaps = 28/133 (21%)
Query: 214 NTCPQLVITDFGSS-YTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-K 271
+ + + DFG + + + G MAPEV L Y
Sbjct: 131 DEDGHVKLADFGLARQLDPGEKLTTFV-------GTPEYMAPEVLLGKG-------YGKA 176
Query: 272 SDAWTAGTVAYEIFGHDNPF---------YQSARNTDYEVNALPQLNTNVPEVMRRLVAK 322
D W+ G + YE+ PF ++ P ++ + L+ K
Sbjct: 177 VDIWSLGVILYELLTGKPPFPGDDQLLELFKKIGKPKPP---FPPPEWDISPEAKDLIRK 233
Query: 323 LLENDPSDRPSAE 335
LL DP R +AE
Sbjct: 234 LLVKDPEKRLTAE 246
Score = 54.1 bits (131), Expect = 1e-07
Identities = 28/133 (21%), Positives = 44/133 (33%), Gaps = 28/133 (21%)
Query: 655 NTCPQLVITDFGSS-YTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-K 712
+ + + DFG + + + G MAPEV L Y
Sbjct: 131 DEDGHVKLADFGLARQLDPGEKLTTFV-------GTPEYMAPEVLLGKG-------YGKA 176
Query: 713 SDAWTAGTVAYEIFGHDNPF---------YQSARNTDYEVNALPQLNTNVPEVMRRLVAK 763
D W+ G + YE+ PF ++ P ++ + L+ K
Sbjct: 177 VDIWSLGVILYELLTGKPPFPGDDQLLELFKKIGKPKPP---FPPPEWDISPEAKDLIRK 233
Query: 764 LLENDPSDRPSAE 776
LL DP R +AE
Sbjct: 234 LLVKDPEKRLTAE 246
Score = 34.8 bits (81), Expect = 0.29
Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 22/87 (25%)
Query: 114 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 171
+I + + +G+ VY A + G A+K+ + K+ + + L
Sbjct: 2 EILEKLGEGSFGKVYLARDKKTGKLVAIKV----------------IKKKKIKKDRERIL 45
Query: 172 NEDMLMNSVENLPPHPNVVVMHFAFTD 198
E ++ ++ HPN+V ++ F D
Sbjct: 46 REIKILKKLK----HPNIVRLYDVFED 68
Score = 34.8 bits (81), Expect = 0.29
Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 22/87 (25%)
Query: 555 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 612
+I + + +G+ VY A + G A+K+ + K+ + + L
Sbjct: 2 EILEKLGEGSFGKVYLARDKKTGKLVAIKV----------------IKKKKIKKDRERIL 45
Query: 613 NEDMLMNSVENLPPHPNVVVMHFAFTD 639
E ++ ++ HPN+V ++ F D
Sbjct: 46 REIKILKKLK----HPNIVRLYDVFED 68
>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain.
Length = 260
Score = 97.3 bits (243), Expect = 4e-22
Identities = 68/273 (24%), Positives = 98/273 (35%), Gaps = 60/273 (21%)
Query: 839 LKRAEFRLITNALQYIQRNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSA 898
+K + R + R E ++ + HPN+V + AF D L+
Sbjct: 29 VKILKKRSEKSKKDQTARREIRILRRLS----HPNIVRLIDAFEDK----DHLYLVME-- 78
Query: 899 LPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNM 958
Y LF + + LS E + Q+L G+ +L+
Sbjct: 79 ----------YCEGGDLFDYLSRGGP------------LSEDEAKKIALQILRGLEYLHS 116
Query: 959 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS-YTNKSGLSMQYSSADIELGGNVALM 1017
+ HRDLK +NILLD I DFG + KS S+ G M
Sbjct: 117 NGIIHRDLKPENILLD-ENGVVK----IADFGLAKKLLKSSSSLT------TFVGTPWYM 165
Query: 1018 APEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL---PQL 1073
APEV L Y K D W+ G + YE+ PF ++ P L
Sbjct: 166 APEV------LLGGNGYGPKVDVWSLGVILYELLTGKPPFSGENILDQLQLIRRILGPPL 219
Query: 1074 NTNVPEV------MRRLVAKLLENDPSDRPSAE 1100
+ P+ + L+ K L DPS RP+AE
Sbjct: 220 EFDEPKWSSGSEEAKDLIKKCLNKDPSKRPTAE 252
Score = 93.1 bits (232), Expect = 1e-20
Identities = 74/349 (21%), Positives = 112/349 (32%), Gaps = 101/349 (28%)
Query: 1319 IQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLR 1376
++ + + G+ VY+A + G A+K++ S S
Sbjct: 1 YELLRKLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQT---------------A 45
Query: 1377 LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSL 1436
E ++ + HPN+V + AF D L+ Y L
Sbjct: 46 RREIRILRRLS----HPNIVRLIDAFEDK----DHLYLVME------------YCEGGDL 85
Query: 1437 FILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDC 1496
F + + LS E + Q+L G+ +L+ + HRDLK +NILLD
Sbjct: 86 FDYLSRGGP------------LSEDEAKKIALQILRGLEYLHSNGIIHRDLKPENILLD- 132
Query: 1497 SEDNTCPQLVITDFGSS-YTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 1555
I DFG + KS S+ G MAPEV L Y
Sbjct: 133 ENGVVK----IADFGLAKKLLKSSSSLT------TFVGTPWYMAPEV------LLGGNGY 176
Query: 1556 S-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYWHRKWLWQHLVYSHSSTTPSTVAYEIFG 1614
K D W+ G + YE+ PF
Sbjct: 177 GPKVDVWSLGVILYELLTGKPPFSGENILDQLQ--------------------------- 209
Query: 1615 HDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 1663
+ E + P+ ++ E + L+ K L DPS RP+AE
Sbjct: 210 ----LIRRILGPPLEFD-EPKWSSGSEE-AKDLIKKCLNKDPSKRPTAE 252
Score = 53.4 bits (129), Expect = 3e-07
Identities = 36/130 (27%), Positives = 49/130 (37%), Gaps = 23/130 (17%)
Query: 217 PQLVITDFGSS-YTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDA 274
+ I DFG + KS S+ G MAPEV L Y K D
Sbjct: 135 GVVKIADFGLAKKLLKSSSSLT------TFVGTPWYMAPEV------LLGGNGYGPKVDV 182
Query: 275 WTAGTVAYEIFGHDNPFYQSARNTDYEVNAL---PQLNTNVPEV------MRRLVAKLLE 325
W+ G + YE+ PF ++ P L + P+ + L+ K L
Sbjct: 183 WSLGVILYELLTGKPPFSGENILDQLQLIRRILGPPLEFDEPKWSSGSEEAKDLIKKCLN 242
Query: 326 NDPSDRPSAE 335
DPS RP+AE
Sbjct: 243 KDPSKRPTAE 252
Score = 53.4 bits (129), Expect = 3e-07
Identities = 36/130 (27%), Positives = 49/130 (37%), Gaps = 23/130 (17%)
Query: 658 PQLVITDFGSS-YTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDA 715
+ I DFG + KS S+ G MAPEV L Y K D
Sbjct: 135 GVVKIADFGLAKKLLKSSSSLT------TFVGTPWYMAPEV------LLGGNGYGPKVDV 182
Query: 716 WTAGTVAYEIFGHDNPFYQSARNTDYEVNAL---PQLNTNVPEV------MRRLVAKLLE 766
W+ G + YE+ PF ++ P L + P+ + L+ K L
Sbjct: 183 WSLGVILYELLTGKPPFSGENILDQLQLIRRILGPPLEFDEPKWSSGSEEAKDLIKKCLN 242
Query: 767 NDPSDRPSAE 776
DPS RP+AE
Sbjct: 243 KDPSKRPTAE 252
>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-Activated Protein Kinase
Kinase Kinase. Serine/threonine kinases (STKs),
mitogen-activated protein kinase (MAPK) kinase kinase
(MAPKKK) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called
MAP/ERK kinase kinases (MEKKs) in some cases. They
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
This subfamily is composed of the Apoptosis
Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or
MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant
and fungal MAPKKKs. Also included in this subfamily are
the cell division control proteins Schizosaccharomyces
pombe Cdc7 and Saccharomyces cerevisiae Cdc15.
Length = 260
Score = 83.0 bits (206), Expect = 3e-17
Identities = 71/367 (19%), Positives = 122/367 (33%), Gaps = 136/367 (37%)
Query: 1318 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPL 1375
+ G+ + +G+ VY A + G A+K + + +S L+A+ +E+ L
Sbjct: 1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVE---LSGDSEEELEALEREIRILS--- 54
Query: 1376 RLNEDMLMNSVENLPPHPNVVVMHFA-----------FTDFVPSIPDSSLIYPSALPARL 1424
L HPN+V + + F ++V
Sbjct: 55 SLQ-------------HPNIVRYYGSERDEEKNTLNIFLEYVS----------------- 84
Query: 1425 NPTGGYGRNMSLFILMKKYN----TDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMH 1480
GG SL L+KK+ +R Y R Q+LEG+ +L+ +
Sbjct: 85 ---GG-----SLSSLLKKFGKLPEPVIRKYTR----------------QILEGLAYLHSN 120
Query: 1481 RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAP 1540
HRD+K NIL+D + + DFG + K ++ + G MAP
Sbjct: 121 GIVHRDIKGANILVDSDG-----VVKLADFGCA---KRLGDIETGEGTGSVRGTPYWMAP 172
Query: 1541 EVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYWHRKWLWQHLVYS 1599
EV Y +D W+ G E+ P+ +
Sbjct: 173 EVIRGEE-------YGRAADIWSLGCTVIEMATGKPPWSE-------------------- 205
Query: 1600 HSSTTPSTVAYEIFGHDNPF---YQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDP 1656
NP Y+ + + P++ ++ E + + K L DP
Sbjct: 206 ---------------LGNPMAALYKIGSSGE-----PPEIPEHLSEEAKDFLRKCLRRDP 245
Query: 1657 SDRPSAE 1663
RP+A+
Sbjct: 246 KKRPTAD 252
Score = 81.1 bits (201), Expect = 2e-16
Identities = 48/202 (23%), Positives = 78/202 (38%), Gaps = 51/202 (25%)
Query: 914 SLFILMKKYN----TDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSD 969
SL L+KK+ +R Y R Q+LEG+ +L+ + HRD+K
Sbjct: 87 SLSSLLKKFGKLPEPVIRKYTR----------------QILEGLAYLHSNGIVHRDIKGA 130
Query: 970 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 1029
NIL+D + + DFG + K ++ + G MAPEV
Sbjct: 131 NILVDSDG-----VVKLADFGCA---KRLGDIETGEGTGSVRGTPYWMAPEVIRGEE--- 179
Query: 1030 SFVNYS-KSDAWTAGTVAYEIFG-------HDNPF---YQSARNTDYEVNALPQLNTNVP 1078
Y +D W+ G E+ NP Y+ + + P++ ++
Sbjct: 180 ----YGRAADIWSLGCTVIEMATGKPPWSELGNPMAALYKIGSSGE-----PPEIPEHLS 230
Query: 1079 EVMRRLVAKLLENDPSDRPSAE 1100
E + + K L DP RP+A+
Sbjct: 231 EEAKDFLRKCLRRDPKKRPTAD 252
Score = 47.9 bits (115), Expect = 2e-05
Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 26/126 (20%)
Query: 221 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGT 279
+ DFG + K ++ + G MAPEV Y +D W+ G
Sbjct: 142 LADFGCA---KRLGDIETGEGTGSVRGTPYWMAPEVIRGEE-------YGRAADIWSLGC 191
Query: 280 VAYEIFG-------HDNPF---YQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPS 329
E+ NP Y+ + + P++ ++ E + + K L DP
Sbjct: 192 TVIEMATGKPPWSELGNPMAALYKIGSSGE-----PPEIPEHLSEEAKDFLRKCLRRDPK 246
Query: 330 DRPSAE 335
RP+A+
Sbjct: 247 KRPTAD 252
Score = 47.9 bits (115), Expect = 2e-05
Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 26/126 (20%)
Query: 662 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGT 720
+ DFG + K ++ + G MAPEV Y +D W+ G
Sbjct: 142 LADFGCA---KRLGDIETGEGTGSVRGTPYWMAPEVIRGEE-------YGRAADIWSLGC 191
Query: 721 VAYEIFG-------HDNPF---YQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPS 770
E+ NP Y+ + + P++ ++ E + + K L DP
Sbjct: 192 TVIEMATGKPPWSELGNPMAALYKIGSSGE-----PPEIPEHLSEEAKDFLRKCLRRDPK 246
Query: 771 DRPSAE 776
RP+A+
Sbjct: 247 KRPTAD 252
Score = 32.1 bits (74), Expect = 2.2
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 21/81 (25%)
Query: 112 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPL 169
+ G+ + +G+ VY A + G A+K + + +S L+A+ +E+ L
Sbjct: 1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVE---LSGDSEEELEALEREIRILS--- 54
Query: 170 RLNEDMLMNSVENLPPHPNVV 190
L HPN+V
Sbjct: 55 SLQ-------------HPNIV 62
Score = 32.1 bits (74), Expect = 2.2
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 21/81 (25%)
Query: 553 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPL 610
+ G+ + +G+ VY A + G A+K + + +S L+A+ +E+ L
Sbjct: 1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVE---LSGDSEEELEALEREIRILS--- 54
Query: 611 RLNEDMLMNSVENLPPHPNVV 631
L HPN+V
Sbjct: 55 SLQ-------------HPNIV 62
>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), AGC (Protein Kinases A, G and C) family,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The AGC family is part of
a larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and Phosphoinositide 3-Kinase (PI3K). Members of
this family include cAMP-dependent Protein Kinase (PKA),
cGMP-dependent Protein Kinase (PKG), Protein Kinase C
(PKC), Protein Kinase B (PKB), G protein-coupled Receptor
Kinase (GRK), Serum- and Glucocorticoid-induced Kinase
(SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or
S6K), among others. AGC kinases share an activation
mechanism based on the phosphorylation of up to three
sites: the activation loop (A-loop), the hydrophobic
motif (HM) and the turn motif. Phosphorylation at the
A-loop is required of most AGC kinases, which results in
a disorder-to-order transition of the A-loop. The ordered
conformation results in the access of substrates and ATP
to the active site. A subset of AGC kinases with
C-terminal extensions containing the HM also requires
phosphorylation at this site. Phosphorylation at the HM
allows the C-terminal extension to form an ordered
structure that packs into the hydrophobic pocket of the
catalytic domain, which then reconfigures the kinase into
an active bi-lobed state. In addition, growth
factor-activated AGC kinases such as PKB, p70S6K, RSK,
MSK, PKC, and SGK, require phosphorylation at the turn
motif (also called tail or zipper site), located
N-terminal to the HM at the C-terminal extension. AGC
kinases regulate many cellular processes including
division, growth, survival, metabolism, motility, and
differentiation. Many are implicated in the development
of various human diseases.
Length = 250
Score = 82.6 bits (205), Expect = 4e-17
Identities = 57/242 (23%), Positives = 97/242 (40%), Gaps = 54/242 (22%)
Query: 870 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRN 928
HP +V +H+AF L+++++ +L +
Sbjct: 51 NHPFIVKLHYAFQT----------------------------EEKLYLVLEYAPGGELFS 82
Query: 929 YLRERCAQLSMHERILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVIT 987
+L + + S ER + +++ + +L+ +RDLK +NILLD D + +T
Sbjct: 83 HLSKE-GRFSE-ERARFYAAEIVLALEYLHSLGIIYRDLKPENILLD--ADG---HIKLT 135
Query: 988 DFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVA 1046
DFG + S S + G +APEV L Y K+ D W+ G +
Sbjct: 136 DFGLAKELSSEGSRTNTFC-----GTPEYLAPEVLLGKG-------YGKAVDWWSLGVLL 183
Query: 1047 YE-IFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAA 1103
YE + G PFY R YE + + + R L++ LL+ DP+ R + A
Sbjct: 184 YEMLTGK-PPFYAEDRKEIYEKILKDPLRFPEFLSPEARDLISGLLQKDPTKRLGSGGAE 242
Query: 1104 TV 1105
+
Sbjct: 243 EI 244
Score = 73.7 bits (182), Expect = 4e-14
Identities = 52/226 (23%), Positives = 92/226 (40%), Gaps = 58/226 (25%)
Query: 1361 LKAMSKELLPLRKPLR--LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPS 1418
+K + K+ + RK + L E +++ + HP +V +H+AF
Sbjct: 23 MKVLKKKKIIKRKEVEHTLTERNILSRI----NHPFIVKLHYAFQT-------------- 64
Query: 1419 ALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCAQLSMHERILLFT-QLLEGVTH 1476
L+++++ +L ++L + + S ER + +++ + +
Sbjct: 65 --------------EEKLYLVLEYAPGGELFSHLSKE-GRFSE-ERARFYAAEIVLALEY 108
Query: 1477 LNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA 1536
L+ +RDLK +NILLD D + +TDFG + S S + G
Sbjct: 109 LHSLGIIYRDLKPENILLD--ADG---HIKLTDFGLAKELSSEGSRTNTFC-----GTPE 158
Query: 1537 LMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYE-IFGHDNPFYQS 1580
+APEV L Y K+ D W+ G + YE + G PFY
Sbjct: 159 YLAPEVLLGKG-------YGKAVDWWSLGVLLYEMLTGK-PPFYAE 196
Score = 54.4 bits (132), Expect = 1e-07
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 219 LVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTA 277
+ +TDFG + S S + G +APEV L Y K+ D W+
Sbjct: 132 IKLTDFGLAKELSSEGSRTNTFC-----GTPEYLAPEVLLGKG-------YGKAVDWWSL 179
Query: 278 GTVAYE-IFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA 334
G + YE + G PFY R YE + + + R L++ LL+ DP+ R +
Sbjct: 180 GVLLYEMLTGK-PPFYAEDRKEIYEKILKDPLRFPEFLSPEARDLISGLLQKDPTKRLGS 238
Query: 335 ELAATV 340
A +
Sbjct: 239 GGAEEI 244
Score = 54.4 bits (132), Expect = 1e-07
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 660 LVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTA 718
+ +TDFG + S S + G +APEV L Y K+ D W+
Sbjct: 132 IKLTDFGLAKELSSEGSRTNTFC-----GTPEYLAPEVLLGKG-------YGKAVDWWSL 179
Query: 719 GTVAYE-IFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA 775
G + YE + G PFY R YE + + + R L++ LL+ DP+ R +
Sbjct: 180 GVLLYEMLTGK-PPFYAEDRKEIYEKILKDPLRFPEFLSPEARDLISGLLQKDPTKRLGS 238
Query: 776 ELAATV 781
A +
Sbjct: 239 GGAEEI 244
>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine
Kinase, Phosphoinositide-dependent kinase 1.
Serine/Threonine Kinases (STKs),
Phosphoinositide-dependent kinase 1 (PDK1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). PDK1
carries an N-terminal catalytic domain and a C-terminal
pleckstrin homology (PH) domain that binds
phosphoinositides. It phosphorylates the activation loop
of AGC kinases that are regulated by PI3K such as PKB,
SGK, and PKC, among others, and is crucial for their
activation. Thus, it contributes in regulating many
processes including metabolism, growth, proliferation,
and survival. PDK1 also has the ability to
autophosphorylate and is constitutively active in
mammalian cells. PDK1 is essential for normal embryo
development and is important in regulating cell volume.
Length = 280
Score = 77.2 bits (191), Expect = 5e-15
Identities = 61/285 (21%), Positives = 107/285 (37%), Gaps = 68/285 (23%)
Query: 839 LKRAEFRLIT--NALQYIQRNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYP 896
+K + R + ++Y++ +++L L HP ++ +++ F D + +L +
Sbjct: 31 IKILDKRQLIKEKKVKYVKIEKEVLTR----LNGHPGIIKLYYTFQD------EENLYF- 79
Query: 897 SALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHL 956
L Y N L ++KY + L E+C + ++L + +L
Sbjct: 80 -VL--------EYAPNGELLQYIRKYGS-----LDEKCTRFYAA-------EILLALEYL 118
Query: 957 NMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSY----TNKSGLSMQYSSADIELG- 1011
+ HRDLK +NILLD +D + ITDFG++ + + ++
Sbjct: 119 HSKGIIHRDLKPENILLD--KDMH---IKITDFGTAKVLDPNSSPESNKGDATNIDSQIE 173
Query: 1012 ----------GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR 1061
G ++PE+ P S SD W G + Y++ PF S
Sbjct: 174 KNRRRFASFVGTAEYVSPELLNEKP-----AGKS-SDLWALGCIIYQMLTGKPPFRGS-- 225
Query: 1062 NTDYEV-----NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAEL 1101
+Y N P + L+ KLL DP DR
Sbjct: 226 -NEYLTFQKILKLEYSFPPNFPPDAKDLIEKLLVLDPQDRLGVNE 269
Score = 69.9 bits (172), Expect = 1e-12
Identities = 76/372 (20%), Positives = 124/372 (33%), Gaps = 127/372 (34%)
Query: 1317 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 1374
DD + GK I +G+ + V A + EYA+K + K L
Sbjct: 1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIK----------------ILDKRQL----- 39
Query: 1375 LRLNEDMLMNSVEN-------LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPT 1427
++ + + V+ L HP ++ +++ F D + +L + L
Sbjct: 40 IKEKK---VKYVKIEKEVLTRLNGHPGIIKLYYTFQD------EENLYF--VL------- 81
Query: 1428 GGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDL 1487
Y N L ++KY + L E+C + ++L + +L+ HRDL
Sbjct: 82 -EYAPNGELLQYIRKYGS-----LDEKCTRFYAA-------EILLALEYLHSKGIIHRDL 128
Query: 1488 KSDNILLDCSEDNTCPQLVITDFGSSY----TNKSGLSMQYSSADIELG----------- 1532
K +NILLD +D + ITDFG++ + + ++
Sbjct: 129 KPENILLD--KDMH---IKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFV 183
Query: 1533 GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYWHRKWL 1592
G ++PE+ P S SD W G + Y++ PF S
Sbjct: 184 GTAEYVSPELLNEKP-----AGKS-SDLWALGCIIYQMLTGKPPFRGSN----------- 226
Query: 1593 WQHLVYSHSSTTPSTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLL 1652
Y F Q +Y P N P + L+ KLL
Sbjct: 227 ----------------EYLTF-------QKILKLEYS---FPP---NFPPDAKDLIEKLL 257
Query: 1653 ENDPSDRPSAEL 1664
DP DR
Sbjct: 258 VLDPQDRLGVNE 269
Score = 40.6 bits (96), Expect = 0.005
Identities = 29/136 (21%), Positives = 44/136 (32%), Gaps = 29/136 (21%)
Query: 221 ITDFGSSY----TNKSGLSMQYSSADIELG-----------GNVALMAPEVALATPGLFS 265
ITDFG++ + + ++ G ++PE+ P
Sbjct: 143 ITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKP---- 198
Query: 266 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV-----NALPQLNTNVPEVMRRLV 320
S SD W G + Y++ PF S +Y N P + L+
Sbjct: 199 -AGKS-SDLWALGCIIYQMLTGKPPFRGS---NEYLTFQKILKLEYSFPPNFPPDAKDLI 253
Query: 321 AKLLENDPSDRPSAEL 336
KLL DP DR
Sbjct: 254 EKLLVLDPQDRLGVNE 269
Score = 40.6 bits (96), Expect = 0.005
Identities = 29/136 (21%), Positives = 44/136 (32%), Gaps = 29/136 (21%)
Query: 662 ITDFGSSY----TNKSGLSMQYSSADIELG-----------GNVALMAPEVALATPGLFS 706
ITDFG++ + + ++ G ++PE+ P
Sbjct: 143 ITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKP---- 198
Query: 707 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV-----NALPQLNTNVPEVMRRLV 761
S SD W G + Y++ PF S +Y N P + L+
Sbjct: 199 -AGKS-SDLWALGCIIYQMLTGKPPFRGS---NEYLTFQKILKLEYSFPPNFPPDAKDLI 253
Query: 762 AKLLENDPSDRPSAEL 777
KLL DP DR
Sbjct: 254 EKLLVLDPQDRLGVNE 269
>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine
Kinase, Never In Mitosis gene A-related kinase.
Serine/Threonine Kinases (STKs), Never In Mitosis gene A
(NIMA)-related kinase (Nek) family, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The Nek family is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The Nek family is composed of
11 different mammalian members (Nek1-11) with similarity
to the catalytic domain of Aspergillus nidulans NIMA
kinase, the founding member of the Nek family which was
identified in a screen for cell cycle mutants that were
prevented from entering mitosis. Neks contain a conserved
N-terminal catalytic domain and a more divergent
C-terminal regulatory region of various sizes and
structures. They are involved in the regulation of
downstream processes following the activation of Cdc2,
and many of their functions are cell cycle-related. They
play critical roles in microtubule dynamics during
ciliogenesis and mitosis.
Length = 258
Score = 76.0 bits (188), Expect = 7e-15
Identities = 52/210 (24%), Positives = 84/210 (40%), Gaps = 55/210 (26%)
Query: 914 SLFILMKKY--NTDLRNYLRERCAQ---LSMHERILLFTQLLEGVTHLNMHRTAHRDLKS 968
L I+M+ Y DL ++++ + + + F QL + +L+ + HRD+K
Sbjct: 73 KLCIVME-YADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKILHRDIKP 131
Query: 969 DNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL--------MAPE 1020
NI L S + + DF G+S SS ++A ++PE
Sbjct: 132 QNIFL-TSNGL----VKLGDF--------GISKVLSSTV-----DLAKTVVGTPYYLSPE 173
Query: 1021 VALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL--------- 1070
L Y+ KSD W+ G V YE+ +PF N + L
Sbjct: 174 -------LCQNKPYNYKSDIWSLGCVLYELCTLKHPFE--GEN----LLELALKILKGQY 220
Query: 1071 PQLNTNVPEVMRRLVAKLLENDPSDRPSAE 1100
P + + +R LV+ LL+ DP +RPS
Sbjct: 221 PPIPSQYSSELRNLVSSLLQKDPEERPSIA 250
Score = 67.1 bits (165), Expect = 9e-12
Identities = 53/243 (21%), Positives = 86/243 (35%), Gaps = 79/243 (32%)
Query: 1435 SLFILMKKY--NTDLRNYLRERCAQ---LSMHERILLFTQLLEGVTHLNMHRTAHRDLKS 1489
L I+M+ Y DL ++++ + + + F QL + +L+ + HRD+K
Sbjct: 73 KLCIVME-YADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKILHRDIKP 131
Query: 1490 DNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL--------MAPE 1541
NI L S + + DF G+S SS ++A ++PE
Sbjct: 132 QNIFL-TSNGL----VKLGDF--------GISKVLSSTV-----DLAKTVVGTPYYLSPE 173
Query: 1542 VALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYWHRKWLWQHLVYSH 1600
L Y+ KSD W+ G V YE+ +PF
Sbjct: 174 -------LCQNKPYNYKSDIWSLGCVLYELCTLKHPFE---------------------- 204
Query: 1601 SSTTPSTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP 1660
+A +I Y P + + +R LV+ LL+ DP +RP
Sbjct: 205 -GENLLELALKI-----------LKGQY-----PPIPSQYSSELRNLVSSLLQKDPEERP 247
Query: 1661 SAE 1663
S
Sbjct: 248 SIA 250
Score = 43.6 bits (104), Expect = 4e-04
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 23/94 (24%)
Query: 252 MAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL----- 305
++PE L Y+ KSD W+ G V YE+ +PF N + L
Sbjct: 170 LSPE-------LCQNKPYNYKSDIWSLGCVLYELCTLKHPFE--GEN----LLELALKIL 216
Query: 306 ----PQLNTNVPEVMRRLVAKLLENDPSDRPSAE 335
P + + +R LV+ LL+ DP +RPS
Sbjct: 217 KGQYPPIPSQYSSELRNLVSSLLQKDPEERPSIA 250
Score = 43.6 bits (104), Expect = 4e-04
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 23/94 (24%)
Query: 693 MAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL----- 746
++PE L Y+ KSD W+ G V YE+ +PF N + L
Sbjct: 170 LSPE-------LCQNKPYNYKSDIWSLGCVLYELCTLKHPFE--GEN----LLELALKIL 216
Query: 747 ----PQLNTNVPEVMRRLVAKLLENDPSDRPSAE 776
P + + +R LV+ LL+ DP +RPS
Sbjct: 217 KGQYPPIPSQYSSELRNLVSSLLQKDPEERPSIA 250
>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.
Length = 258
Score = 75.6 bits (187), Expect = 1e-14
Identities = 55/259 (21%), Positives = 96/259 (37%), Gaps = 67/259 (25%)
Query: 1319 IQIGKFIAKGTNAVVYEATFRGVEY------ALKMMFNYSAASNSHAILKAMSKELLPLR 1372
+++GK + +G VY+ T +G A+K + ++ L+ S
Sbjct: 1 LELGKKLGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEAS------- 53
Query: 1373 KPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGR 1432
+M + HPN+V + T P ++
Sbjct: 54 ---------IMKKLS----HPNIVRLLGVCTQGEPLY----IVTE--------------- 81
Query: 1433 NMSLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNI 1492
M DL ++LR+ +L++ + + + Q+ +G+ +L HRDL + N
Sbjct: 82 ------YMP--GGDLLDFLRKHGEKLTLKDLLQMALQIAKGMEYLESKNFVHRDLAARNC 133
Query: 1493 LLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF 1552
L+ E+ I+DFG S + Y + MAPE G F+
Sbjct: 134 LVT--ENLVV---KISDFGLS---RDIYEDDYYRKRGGGKLPIKWMAPESLKD--GKFT- 182
Query: 1553 VNYSKSDAWTAGTVAYEIF 1571
SKSD W+ G + +EIF
Sbjct: 183 ---SKSDVWSFGVLLWEIF 198
Score = 71.4 bits (176), Expect = 3e-13
Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 28/183 (15%)
Query: 925 DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 984
DL ++LR+ +L++ + + + Q+ +G+ +L HRDL + N L+ E+
Sbjct: 87 DLLDFLRKHGEKLTLKDLLQMALQIAKGMEYLESKNFVHRDLAARNCLVT--ENLVV--- 141
Query: 985 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGT 1044
I+DFG S + Y + MAPE G F+ SKSD W+ G
Sbjct: 142 KISDFGLS---RDIYEDDYYRKRGGGKLPIKWMAPESLKD--GKFT----SKSDVWSFGV 192
Query: 1045 VAYEIF--GHDNPFYQSARNTDYEV-------NALPQLNTNVPEVMRRLVAKLLENDPSD 1095
+ +EIF G + P+ ++ EV LP+ N P+ + L+ + DP D
Sbjct: 193 LLWEIFTLG-EQPYPG---MSNEEVLELLEDGYRLPR-PENCPDELYELMLQCWAYDPED 247
Query: 1096 RPS 1098
RP+
Sbjct: 248 RPT 250
Score = 35.6 bits (83), Expect = 0.15
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 23/122 (18%)
Query: 221 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTV 280
I+DFG S + Y + MAPE G F+ SKSD W+ G +
Sbjct: 143 ISDFGLS---RDIYEDDYYRKRGGGKLPIKWMAPESLKD--GKFT----SKSDVWSFGVL 193
Query: 281 AYEIF--GHDNPFYQSARNTDYEV-------NALPQLNTNVPEVMRRLVAKLLENDPSDR 331
+EIF G + P+ ++ EV LP+ N P+ + L+ + DP DR
Sbjct: 194 LWEIFTLG-EQPYPG---MSNEEVLELLEDGYRLPR-PENCPDELYELMLQCWAYDPEDR 248
Query: 332 PS 333
P+
Sbjct: 249 PT 250
Score = 35.6 bits (83), Expect = 0.15
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 23/122 (18%)
Query: 662 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTV 721
I+DFG S + Y + MAPE G F+ SKSD W+ G +
Sbjct: 143 ISDFGLS---RDIYEDDYYRKRGGGKLPIKWMAPESLKD--GKFT----SKSDVWSFGVL 193
Query: 722 AYEIF--GHDNPFYQSARNTDYEV-------NALPQLNTNVPEVMRRLVAKLLENDPSDR 772
+EIF G + P+ ++ EV LP+ N P+ + L+ + DP DR
Sbjct: 194 LWEIFTLG-EQPYPG---MSNEEVLELLEDGYRLPR-PENCPDELYELMLQCWAYDPEDR 248
Query: 773 PS 774
P+
Sbjct: 249 PT 250
>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional.
Length = 357
Score = 74.9 bits (184), Expect = 7e-14
Identities = 60/241 (24%), Positives = 104/241 (43%), Gaps = 43/241 (17%)
Query: 1438 ILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 1497
+++ Y++DL YL +R L + + +++ Q+LEG+ +L+ R HRD+K++NI ++
Sbjct: 134 MVLPHYSSDLYTYLTKRSRPLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFIN-D 192
Query: 1498 EDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-S 1556
D C I D G++ + A + L G V APEV LA Y S
Sbjct: 193 VDQVC----IGDLGAAQFPVV------APAFLGLAGTVETNAPEV-LARD------KYNS 235
Query: 1557 KSDAWTAGTVAYEIFGHDNPFYQSARNTDYWHRKWLWQHLV------------YSHSSTT 1604
K+D W+AG V +E+ + + ++ +T + K HL+ + +
Sbjct: 236 KADIWSAGIVLFEMLAYPSTIFEDPPSTPEEYVKSCHSHLLKIISTLKVHPEEFPRDPGS 295
Query: 1605 PSTVAYEIFG--HDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA 1662
+ + P+ + N+P LV K+L D + RPSA
Sbjct: 296 RLVRGFIEYASLERQPYTRYPCFQRV----------NLPIDGEFLVHKMLTFDAAMRPSA 345
Query: 1663 E 1663
E
Sbjct: 346 E 346
Score = 72.2 bits (177), Expect = 5e-13
Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 19/151 (12%)
Query: 917 ILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 976
+++ Y++DL YL +R L + + +++ Q+LEG+ +L+ R HRD+K++NI ++
Sbjct: 134 MVLPHYSSDLYTYLTKRSRPLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFIN-D 192
Query: 977 EDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-S 1035
D C I D G++ + A + L G V APEV LA Y S
Sbjct: 193 VDQVC----IGDLGAAQFPVV------APAFLGLAGTVETNAPEV-LARD------KYNS 235
Query: 1036 KSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 1066
K+D W+AG V +E+ + + ++ +T E
Sbjct: 236 KADIWSAGIVLFEMLAYPSTIFEDPPSTPEE 266
>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain.
Phosphotransferases. Tyrosine-specific kinase subfamily.
Length = 257
Score = 72.9 bits (180), Expect = 7e-14
Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 33/185 (17%)
Query: 925 DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 984
DL +YLR+ +LS+ + + Q+ G+ +L HRDL + N L+ E+
Sbjct: 87 DLLSYLRKNRPKLSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLVG--ENLVVK-- 142
Query: 985 VITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNYSKSDAWTA 1042
I+DFG S + Y GG + + MAPE L SKSD W+
Sbjct: 143 -ISDFGLS---RDLYDDDYYRKR---GGKLPIRWMAPES------LKEGKFTSKSDVWSF 189
Query: 1043 GTVAYEIF--GHDNPFYQSARNTDYEV-------NALPQLNTNVPEVMRRLVAKLLENDP 1093
G + +EIF G + P+ ++ EV LPQ N P + L+ + DP
Sbjct: 190 GVLLWEIFTLG-EQPYPGM---SNEEVLEYLKNGYRLPQPP-NCPPELYDLMLQCWAEDP 244
Query: 1094 SDRPS 1098
DRP+
Sbjct: 245 EDRPT 249
Score = 67.9 bits (167), Expect = 5e-12
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 19/128 (14%)
Query: 1446 DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 1505
DL +YLR+ +LS+ + + Q+ G+ +L HRDL + N L+ E+
Sbjct: 87 DLLSYLRKNRPKLSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLVG--ENLVVK-- 142
Query: 1506 VITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNYSKSDAWTA 1563
I+DFG S + Y GG + + MAPE L SKSD W+
Sbjct: 143 -ISDFGLS---RDLYDDDYYRKR---GGKLPIRWMAPES------LKEGKFTSKSDVWSF 189
Query: 1564 GTVAYEIF 1571
G + +EIF
Sbjct: 190 GVLLWEIF 197
Score = 41.4 bits (98), Expect = 0.003
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 28/124 (22%)
Query: 221 ITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNYSKSDAWTAG 278
I+DFG S + Y GG + + MAPE L SKSD W+ G
Sbjct: 143 ISDFGLS---RDLYDDDYYRKR---GGKLPIRWMAPES------LKEGKFTSKSDVWSFG 190
Query: 279 TVAYEIF--GHDNPFYQSARNTDYEV-------NALPQLNTNVPEVMRRLVAKLLENDPS 329
+ +EIF G + P+ ++ EV LPQ N P + L+ + DP
Sbjct: 191 VLLWEIFTLG-EQPYPGM---SNEEVLEYLKNGYRLPQPP-NCPPELYDLMLQCWAEDPE 245
Query: 330 DRPS 333
DRP+
Sbjct: 246 DRPT 249
Score = 41.4 bits (98), Expect = 0.003
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 28/124 (22%)
Query: 662 ITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNYSKSDAWTAG 719
I+DFG S + Y GG + + MAPE L SKSD W+ G
Sbjct: 143 ISDFGLS---RDLYDDDYYRKR---GGKLPIRWMAPES------LKEGKFTSKSDVWSFG 190
Query: 720 TVAYEIF--GHDNPFYQSARNTDYEV-------NALPQLNTNVPEVMRRLVAKLLENDPS 770
+ +EIF G + P+ ++ EV LPQ N P + L+ + DP
Sbjct: 191 VLLWEIFTLG-EQPYPGM---SNEEVLEYLKNGYRLPQPP-NCPPELYDLMLQCWAEDPE 245
Query: 771 DRPS 774
DRP+
Sbjct: 246 DRPT 249
>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like
MAP Kinase Kinase Kinases. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase (MAPKKK) subfamily, fungal Bck1-like proteins,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAPKKK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
group include the MAPKKKs Saccharomyces cerevisiae Bck1
and Schizosaccharomyces pombe Mkh1, and related proteins.
MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs
or MKKs or MAP2Ks), which in turn phosphorylate and
activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. Budding yeast Bck1 is part of the
cell integrity MAPK pathway, which is activated by
stresses and aggressions to the cell wall. The MAPKKK
Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the
cascade that is important in the maintenance of cell wall
homeostasis. Fission yeast Mkh1 is involved in MAPK
cascades regulating cell morphology, cell wall integrity,
salt resistance, and filamentous growth in response to
stress.
Length = 272
Score = 70.6 bits (173), Expect = 6e-13
Identities = 50/176 (28%), Positives = 77/176 (43%), Gaps = 42/176 (23%)
Query: 945 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS------YTNKSG 998
Q+LEG+ +L+ HRDLK+DN+L+D D C I+DFG S Y N
Sbjct: 113 FTEQVLEGLAYLHSKGILHRDLKADNLLVD--ADGICK---ISDFGISKKSDDIYDNDQN 167
Query: 999 LSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQ 1058
+SMQ G+V MAPEV + +S +K D W+ G V E+F P+
Sbjct: 168 MSMQ---------GSVFWMAPEVIHSYSQGYS----AKVDIWSLGCVVLEMFAGRRPW-- 212
Query: 1059 SARNTDYEVNAL-------------PQLNTNVPEVMRRLVAKLLENDPSDRPSAEL 1101
+ + + A+ P ++ N+ V + +P +RP+A
Sbjct: 213 ---SDEEAIAAMFKLGNKRSAPPIPPDVSMNLSPVALDFLNACFTINPDNRPTARE 265
Score = 66.4 bits (162), Expect = 2e-11
Identities = 42/118 (35%), Positives = 58/118 (49%), Gaps = 24/118 (20%)
Query: 1466 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS------YTNKSG 1519
Q+LEG+ +L+ HRDLK+DN+L+D D C I+DFG S Y N
Sbjct: 113 FTEQVLEGLAYLHSKGILHRDLKADNLLVD--ADGICK---ISDFGISKKSDDIYDNDQN 167
Query: 1520 LSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF 1577
+SMQ G+V MAPEV + +S +K D W+ G V E+F P+
Sbjct: 168 MSMQ---------GSVFWMAPEVIHSYSQGYS----AKVDIWSLGCVVLEMFAGRRPW 212
Score = 41.7 bits (98), Expect = 0.002
Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 40/143 (27%)
Query: 213 DNTCPQLVITDFGSS------YTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF 266
D C I+DFG S Y N +SMQ G+V MAPEV + +S
Sbjct: 144 DGICK---ISDFGISKKSDDIYDNDQNMSMQ---------GSVFWMAPEVIHSYSQGYS- 190
Query: 267 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL-------------PQLNTNVP 313
+K D W+ G V E+F P+ + + + A+ P ++ N+
Sbjct: 191 ---AKVDIWSLGCVVLEMFAGRRPW-----SDEEAIAAMFKLGNKRSAPPIPPDVSMNLS 242
Query: 314 EVMRRLVAKLLENDPSDRPSAEL 336
V + +P +RP+A
Sbjct: 243 PVALDFLNACFTINPDNRPTARE 265
Score = 41.7 bits (98), Expect = 0.002
Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 40/143 (27%)
Query: 654 DNTCPQLVITDFGSS------YTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF 707
D C I+DFG S Y N +SMQ G+V MAPEV + +S
Sbjct: 144 DGICK---ISDFGISKKSDDIYDNDQNMSMQ---------GSVFWMAPEVIHSYSQGYS- 190
Query: 708 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL-------------PQLNTNVP 754
+K D W+ G V E+F P+ + + + A+ P ++ N+
Sbjct: 191 ---AKVDIWSLGCVVLEMFAGRRPW-----SDEEAIAAMFKLGNKRSAPPIPPDVSMNLS 242
Query: 755 EVMRRLVAKLLENDPSDRPSAEL 777
V + +P +RP+A
Sbjct: 243 PVALDFLNACFTINPDNRPTARE 265
>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function
prediction only / Signal transduction mechanisms /
Transcription / DNA replication, recombination, and
repair].
Length = 384
Score = 72.1 bits (175), Expect = 7e-13
Identities = 70/348 (20%), Positives = 117/348 (33%), Gaps = 86/348 (24%)
Query: 1320 QIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNE 1379
+I + + +G+ VY A R ALK++ + ++ +E+ L
Sbjct: 3 RILRKLGEGSFGEVYLARDR-KLVALKVLAK--KLESKSKEVERFLREIQILAS------ 53
Query: 1380 DMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFIL 1439
L PN+V ++ F D SL+++
Sbjct: 54 ---------LNHPPNIVKLYDFFQD----------------------------EGSLYLV 76
Query: 1440 MKKY-NTDLRNYLRER--CAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDC 1496
M+ L + L++ LS E + + Q+L + +L+ HRD+K +NILLD
Sbjct: 77 MEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHRDIKPENILLDR 136
Query: 1497 SEDNTCPQLVITDFG-SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 1555
+ + DFG + G + + G MAPEV L GL
Sbjct: 137 DGR----VVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLL---GLSLAYAS 189
Query: 1556 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYWHRKWLWQHLVYSHSSTTPSTVAYEIFGH 1615
S SD W+ G YE+ PF +++ ++ +I
Sbjct: 190 SSSDIWSLGITLYELLTGLPPF--------------------EGEKNSSATSQTLKIILE 229
Query: 1616 DN-PFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA 1662
P S + L+ KLL DP +R S+
Sbjct: 230 LPTPSLASPLSPSNPELISKAA--------SDLLKKLLAKDPKNRLSS 269
Score = 70.9 bits (172), Expect = 2e-12
Identities = 51/205 (24%), Positives = 80/205 (39%), Gaps = 26/205 (12%)
Query: 914 SLFILMKKY-NTDLRNYLRER--CAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDN 970
SL+++M+ L + L++ LS E + + Q+L + +L+ HRD+K +N
Sbjct: 72 SLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHRDIKPEN 131
Query: 971 ILLDCSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 1029
ILLD + + DFG + G + + G MAPEV L GL
Sbjct: 132 ILLDRDGR----VVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLL---GLS 184
Query: 1030 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV---------------NALPQLN 1074
S SD W+ G YE+ PF ++ P
Sbjct: 185 LAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLASPLSPSNP 244
Query: 1075 TNVPEVMRRLVAKLLENDPSDRPSA 1099
+ + L+ KLL DP +R S+
Sbjct: 245 ELISKAASDLLKKLLAKDPKNRLSS 269
Score = 41.7 bits (96), Expect = 0.003
Identities = 33/147 (22%), Positives = 50/147 (34%), Gaps = 22/147 (14%)
Query: 204 PDSSLIYPKDNTCPQLVITDFG-SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG 262
P++ L+ + + DFG + G + + G MAPEV L G
Sbjct: 129 PENILLDRDGR---VVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLL---G 182
Query: 263 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV---------------NALPQ 307
L S SD W+ G YE+ PF ++ P
Sbjct: 183 LSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLASPLSPS 242
Query: 308 LNTNVPEVMRRLVAKLLENDPSDRPSA 334
+ + L+ KLL DP +R S+
Sbjct: 243 NPELISKAASDLLKKLLAKDPKNRLSS 269
Score = 41.7 bits (96), Expect = 0.003
Identities = 33/147 (22%), Positives = 50/147 (34%), Gaps = 22/147 (14%)
Query: 645 PDSSLIYPKDNTCPQLVITDFG-SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG 703
P++ L+ + + DFG + G + + G MAPEV L G
Sbjct: 129 PENILLDRDGR---VVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLL---G 182
Query: 704 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV---------------NALPQ 748
L S SD W+ G YE+ PF ++ P
Sbjct: 183 LSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLASPLSPS 242
Query: 749 LNTNVPEVMRRLVAKLLENDPSDRPSA 775
+ + L+ KLL DP +R S+
Sbjct: 243 NPELISKAASDLLKKLLAKDPKNRLSS 269
>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity.
Phosphotransferases. The specificity of this class of
kinases can not be predicted. Possible dual-specificity
Ser/Thr/Tyr kinase.
Length = 258
Score = 68.7 bits (169), Expect = 2e-12
Identities = 54/186 (29%), Positives = 83/186 (44%), Gaps = 34/186 (18%)
Query: 925 DLRNYLRE-RCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQ 983
DL +YLR+ R +LS+ + + Q+ G+ +L HRDL + N L+ E+
Sbjct: 87 DLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLV--GENLVVK- 143
Query: 984 LVITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNYSKSDAWT 1041
I+DFG S + Y GG + + MAPE L SKSD W+
Sbjct: 144 --ISDFGLS---RDLYDDDYYKVK---GGKLPIRWMAPES------LKEGKFTSKSDVWS 189
Query: 1042 AGTVAYEIF--GHDNPFYQSARNTDYEV-------NALPQLNTNVPEVMRRLVAKLLEND 1092
G + +EIF G + P+ ++ EV LP+ N P + +L+ + D
Sbjct: 190 FGVLLWEIFTLG-EEPYP---GMSNAEVLEYLKKGYRLPKPP-NCPPELYKLMLQCWAED 244
Query: 1093 PSDRPS 1098
P DRP+
Sbjct: 245 PEDRPT 250
Score = 64.1 bits (157), Expect = 9e-11
Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 20/129 (15%)
Query: 1446 DLRNYLRE-RCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQ 1504
DL +YLR+ R +LS+ + + Q+ G+ +L HRDL + N L+ E+
Sbjct: 87 DLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLV--GENLVVK- 143
Query: 1505 LVITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNYSKSDAWT 1562
I+DFG S + Y GG + + MAPE L SKSD W+
Sbjct: 144 --ISDFGLS---RDLYDDDYYKVK---GGKLPIRWMAPES------LKEGKFTSKSDVWS 189
Query: 1563 AGTVAYEIF 1571
G + +EIF
Sbjct: 190 FGVLLWEIF 198
Score = 39.1 bits (92), Expect = 0.013
Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 28/124 (22%)
Query: 221 ITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNYSKSDAWTAG 278
I+DFG S + Y GG + + MAPE L SKSD W+ G
Sbjct: 144 ISDFGLS---RDLYDDDYYKVK---GGKLPIRWMAPES------LKEGKFTSKSDVWSFG 191
Query: 279 TVAYEIF--GHDNPFYQSARNTDYEV-------NALPQLNTNVPEVMRRLVAKLLENDPS 329
+ +EIF G + P+ ++ EV LP+ N P + +L+ + DP
Sbjct: 192 VLLWEIFTLG-EEPYP---GMSNAEVLEYLKKGYRLPKPP-NCPPELYKLMLQCWAEDPE 246
Query: 330 DRPS 333
DRP+
Sbjct: 247 DRPT 250
Score = 39.1 bits (92), Expect = 0.013
Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 28/124 (22%)
Query: 662 ITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNYSKSDAWTAG 719
I+DFG S + Y GG + + MAPE L SKSD W+ G
Sbjct: 144 ISDFGLS---RDLYDDDYYKVK---GGKLPIRWMAPES------LKEGKFTSKSDVWSFG 191
Query: 720 TVAYEIF--GHDNPFYQSARNTDYEV-------NALPQLNTNVPEVMRRLVAKLLENDPS 770
+ +EIF G + P+ ++ EV LP+ N P + +L+ + DP
Sbjct: 192 VLLWEIFTLG-EEPYP---GMSNAEVLEYLKKGYRLPKPP-NCPPELYKLMLQCWAEDPE 246
Query: 771 DRPS 774
DRP+
Sbjct: 247 DRPT 250
>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein
Kinase-like Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Cyclin-Dependent protein Kinase
(CDK)-like subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CDK-like subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKs are partly
regulated by their subcellular localization, which
defines substrate phosphorylation and the resulting
specific function. CDK1, CDK2, CDK4, and CDK6 have
well-defined functions in the cell cycle, such as the
regulation of the early G1 phase by CDK4 or CDK6, the
G1/S phase transition by CDK2, or the entry of mitosis by
CDK1. They also exhibit overlapping cyclin specificity
and functions in certain conditions. Knockout mice with a
single CDK deleted remain viable with specific
phenotypes, showing that some CDKs can compensate for
each other. For example, CDK4 can compensate for the loss
of CDK6, however, double knockout mice with both CDK4 and
CDK6 deleted die in utero. CDK8 and CDK9 are mainly
involved in transcription while CDK5 is implicated in
neuronal function. CDK7 plays essential roles in both the
cell cycle as a CDK-Activating Kinase (CAK) and in
transcription as a component of the general transcription
factor TFIIH.
Length = 282
Score = 68.3 bits (168), Expect = 4e-12
Identities = 54/228 (23%), Positives = 86/228 (37%), Gaps = 58/228 (25%)
Query: 912 NMSLFILMKKYNTDLRNYLRERCAQLSMHERILLFT-QLLEGVTHLNMHRTAHRDLKSDN 970
L+++ + + DL+ YL +R LS + I QLL G+ + + HR HRDLK N
Sbjct: 70 ERKLYLVFEYCDMDLKKYLDKRPGPLSPNL-IKSIMYQLLRGLAYCHSHRILHRDLKPQN 128
Query: 971 ILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPG 1027
IL++ D L + DF GL+ + V + APE+ L +
Sbjct: 129 ILIN--RDGV---LKLADF--------GLARAFGIPLRTYTHEVVTLWYRAPEILLGSK- 174
Query: 1028 LFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDY-----------------EVNA 1069
+YS + D W+ G + E+ P + D V
Sbjct: 175 -----HYSTAVDIWSVGCIFAEMITGK-PLFPGDSEIDQLFKIFQILGTPTEESWPGVTK 228
Query: 1070 LPQLNTNVP---------------EVMRRLVAKLLENDPSDRPSAELA 1102
LP P L++K+L+ +P+ R SA+ A
Sbjct: 229 LPDYKPTFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEA 276
Score = 67.5 bits (166), Expect = 9e-12
Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 25/143 (17%)
Query: 1433 NMSLFILMKKYNTDLRNYLRERCAQLSMHERILLFT-QLLEGVTHLNMHRTAHRDLKSDN 1491
L+++ + + DL+ YL +R LS + I QLL G+ + + HR HRDLK N
Sbjct: 70 ERKLYLVFEYCDMDLKKYLDKRPGPLSPNL-IKSIMYQLLRGLAYCHSHRILHRDLKPQN 128
Query: 1492 ILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPG 1548
IL++ D L + DF GL+ + V + APE+ L +
Sbjct: 129 ILIN--RDGV---LKLADF--------GLARAFGIPLRTYTHEVVTLWYRAPEILLGSK- 174
Query: 1549 LFSFVNYSKS-DAWTAGTVAYEI 1570
+YS + D W+ G + E+
Sbjct: 175 -----HYSTAVDIWSVGCIFAEM 192
>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine
Kinase, MAP/ERK kinase kinase 4. Serine/threonine
kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK4 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK4 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38
MAPK signaling pathways by directly activating their
respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38
are collectively known as stress-activated MAPKs, as they
are activated in response to a variety of environmental
stresses and pro-inflammatory cytokines. MEKK4 also plays
roles in the re-polarization of the actin cytoskeleton in
response to osmotic stress, in the proper closure of the
neural tube, in cardiovascular development, and in immune
responses.
Length = 264
Score = 65.8 bits (161), Expect = 2e-11
Identities = 55/181 (30%), Positives = 78/181 (43%), Gaps = 26/181 (14%)
Query: 935 AQLSMHERIL------LFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVIT 987
+L H RIL ++T QLLEG+ +L+ H HRD+K NI LD N +L
Sbjct: 87 EELLEHGRILDEHVIRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLD---HNGVIKLG-- 141
Query: 988 DFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVA 1046
DFG + K+ + L G A MAPEV G + ++ D W+ G V
Sbjct: 142 DFGCAVKLKNN-TTTMGEEVQSLAGTPAYMAPEVITGGKG----KGHGRAADIWSLGCVV 196
Query: 1047 YEIFGHDNPFYQSARNTD--YEVNA-----LPQLNTNVPEVMRRLVAKLLENDPSDRPSA 1099
E+ P+ + + V A +P PE L + LE+DP RP+A
Sbjct: 197 LEMATGKRPWSELDNEFQIMFHVGAGHKPPIPDSLQLSPEGKDFL-DRCLESDPKKRPTA 255
Query: 1100 E 1100
Sbjct: 256 S 256
Score = 60.0 bits (146), Expect = 2e-09
Identities = 55/216 (25%), Positives = 81/216 (37%), Gaps = 54/216 (25%)
Query: 1456 AQLSMHERIL------LFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVIT 1508
+L H RIL ++T QLLEG+ +L+ H HRD+K NI LD N +L
Sbjct: 87 EELLEHGRILDEHVIRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLD---HNGVIKLG-- 141
Query: 1509 DFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVA 1567
DFG + K+ + L G A MAPEV G + ++ D W+ G V
Sbjct: 142 DFGCAVKLKNN-TTTMGEEVQSLAGTPAYMAPEVITGGKG----KGHGRAADIWSLGCVV 196
Query: 1568 YEIFGHDNPFYQSARNTDYWHRKWLWQHLVYSHSSTTPSTVAYEIFGHDNPFYQSARNTD 1627
E+ P+ + +Q + + + P
Sbjct: 197 LEMATGKRPWSELDNE---------FQ-------------IMFHVGAGHKP--------- 225
Query: 1628 YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 1663
+P PE L + LE+DP RP+A
Sbjct: 226 ----PIPDSLQLSPEGKDFL-DRCLESDPKKRPTAS 256
Score = 31.5 bits (72), Expect = 3.1
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 14/122 (11%)
Query: 222 TDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTV 280
DFG + K+ + L G A MAPEV G + ++ D W+ G V
Sbjct: 141 GDFGCAVKLKNN-TTTMGEEVQSLAGTPAYMAPEVITGGKG----KGHGRAADIWSLGCV 195
Query: 281 AYEIFGHDNPFYQSARNTD--YEVNA-----LPQLNTNVPEVMRRLVAKLLENDPSDRPS 333
E+ P+ + + V A +P PE L + LE+DP RP+
Sbjct: 196 VLEMATGKRPWSELDNEFQIMFHVGAGHKPPIPDSLQLSPEGKDFL-DRCLESDPKKRPT 254
Query: 334 AE 335
A
Sbjct: 255 AS 256
Score = 31.5 bits (72), Expect = 3.1
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 14/122 (11%)
Query: 663 TDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTV 721
DFG + K+ + L G A MAPEV G + ++ D W+ G V
Sbjct: 141 GDFGCAVKLKNN-TTTMGEEVQSLAGTPAYMAPEVITGGKG----KGHGRAADIWSLGCV 195
Query: 722 AYEIFGHDNPFYQSARNTD--YEVNA-----LPQLNTNVPEVMRRLVAKLLENDPSDRPS 774
E+ P+ + + V A +P PE L + LE+DP RP+
Sbjct: 196 VLEMATGKRPWSELDNEFQIMFHVGAGHKPPIPDSLQLSPEGKDFL-DRCLESDPKKRPT 254
Query: 775 AE 776
A
Sbjct: 255 AS 256
>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine
Kinase, MAP/ERK kinase kinase 1. Serine/threonine
kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK1 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
MEKK1 activates the extracellular signal-regulated kinase
1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways
by activating their respective MAPKKs, MEK1/2 and
MKK4/MKK7, respectively. MEKK1 is important in regulating
cell survival and apoptosis. MEKK1 also plays a role in
cell migration, tissue maintenance and homeostasis, and
wound healing.
Length = 268
Score = 65.7 bits (160), Expect = 3e-11
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 26/163 (15%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
QLL G+++L+ ++ HRD+K N+L+ D+T +L I DFG++ + L+ + + A
Sbjct: 111 QLLRGLSYLHENQIIHRDVKGANLLI----DSTGQRLRIADFGAA----ARLAAKGTGAG 162
Query: 1008 I---ELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNT 1063
+L G +A MAPEV Y +S D W+ G V E+ P+ +
Sbjct: 163 EFQGQLLGTIAFMAPEVLRGEQ-------YGRSCDVWSVGCVIIEMATAKPPWNAEKHSN 215
Query: 1064 DYEV-------NALPQLNTNVPEVMRRLVAKLLENDPSDRPSA 1099
+ P + ++ +R + + LE P DRP +
Sbjct: 216 HLALIFKIASATTAPSIPEHLSPGLRDVTLRCLELQPEDRPPS 258
Score = 56.8 bits (137), Expect = 3e-08
Identities = 47/198 (23%), Positives = 81/198 (40%), Gaps = 54/198 (27%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
QLL G+++L+ ++ HRD+K N+L+ D+T +L I DFG++ + L+ + + A
Sbjct: 111 QLLRGLSYLHENQIIHRDVKGANLLI----DSTGQRLRIADFGAA----ARLAAKGTGAG 162
Query: 1529 I---ELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNT 1584
+L G +A MAPEV Y +S D W+ G V E+
Sbjct: 163 EFQGQLLGTIAFMAPEVLRGEQ-------YGRSCDVWSVGCVIIEM-------------- 201
Query: 1585 DYWHRKWLWQHLVYSHSSTTPSTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVM 1644
++ P A + H ++ A P + ++ +
Sbjct: 202 ----------------ATAKPPWNAEKHSNHLALIFKIA-----SATTAPSIPEHLSPGL 240
Query: 1645 RRLVAKLLENDPSDRPSA 1662
R + + LE P DRP +
Sbjct: 241 RDVTLRCLELQPEDRPPS 258
Score = 41.0 bits (96), Expect = 0.004
Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 22/133 (16%)
Query: 213 DNTCPQLVITDFGSSYTNKSGLSMQYSSADI---ELGGNVALMAPEVALATPGLFSFVNY 269
D+T +L I DFG++ + L+ + + A +L G +A MAPEV Y
Sbjct: 137 DSTGQRLRIADFGAA----ARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQ-------Y 185
Query: 270 SKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEV-------NALPQLNTNVPEVMRRLVA 321
+S D W+ G V E+ P+ + + P + ++ +R +
Sbjct: 186 GRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKIASATTAPSIPEHLSPGLRDVTL 245
Query: 322 KLLENDPSDRPSA 334
+ LE P DRP +
Sbjct: 246 RCLELQPEDRPPS 258
Score = 41.0 bits (96), Expect = 0.004
Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 22/133 (16%)
Query: 654 DNTCPQLVITDFGSSYTNKSGLSMQYSSADI---ELGGNVALMAPEVALATPGLFSFVNY 710
D+T +L I DFG++ + L+ + + A +L G +A MAPEV Y
Sbjct: 137 DSTGQRLRIADFGAA----ARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQ-------Y 185
Query: 711 SKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEV-------NALPQLNTNVPEVMRRLVA 762
+S D W+ G V E+ P+ + + P + ++ +R +
Sbjct: 186 GRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKIASATTAPSIPEHLSPGLRDVTL 245
Query: 763 KLLENDPSDRPSA 775
+ LE P DRP +
Sbjct: 246 RCLELQPEDRPPS 258
>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases.
Protein Kinases (PKs), STE family, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The STE family is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases (STKs), protein tyrosine
kinases (PTKs), RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This family is composed of STKs, and
some dual-specificity PKs that phosphorylate both
threonine and tyrosine residues of target proteins. Most
members are kinases involved in mitogen-activated protein
kinase (MAPK) signaling cascades, acting as MAPK kinases
(MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase
kinase kinases (MAP4Ks). The MAPK signaling pathways are
important mediators of cellular responses to
extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAPK, which is
phosphorylated and activated by a MAPKK, which itself is
phosphorylated and activated by a MAPKKK. Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAPKKK to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. Other STE family members include
p21-activated kinases (PAKs) and class III myosins, among
others. PAKs are Rho family GTPase-regulated kinases that
serve as important mediators in the function of Cdc42
(cell division cycle 42) and Rac. Class III myosins are
motor proteins containing an N-terminal kinase catalytic
domain and a C-terminal actin-binding domain, which can
phosphorylate several cytoskeletal proteins, conventional
myosin regulatory light chains, as well as
autophosphorylate the C-terminal motor domain. They play
an important role in maintaining the structural integrity
of photoreceptor cell microvilli.
Length = 253
Score = 64.2 bits (157), Expect = 6e-11
Identities = 44/164 (26%), Positives = 71/164 (43%), Gaps = 34/164 (20%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
+LL+G+ +L+ + HRD+K+ NILL + ++ + DFG S A
Sbjct: 106 ELLKGLEYLHSNGIIHRDIKAANILL-----TSDGEVKLIDFGLSAQLSDT------KAR 154
Query: 1008 IELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 1066
+ G MAPEV P Y K+D W+ G A E+ P+ +
Sbjct: 155 NTMVGTPYWMAPEVINGKP-------YDYKADIWSLGITAIELAEGKPPYSELPP----- 202
Query: 1067 VNALPQLNTNVP----------EVMRRLVAKLLENDPSDRPSAE 1100
+ AL ++ TN P + + + K L+ +P RP+AE
Sbjct: 203 MKALFKIATNGPPGLRNPEKWSDEFKDFLKKCLQKNPEKRPTAE 246
Score = 63.0 bits (154), Expect = 2e-10
Identities = 70/350 (20%), Positives = 123/350 (35%), Gaps = 112/350 (32%)
Query: 1320 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 1377
+I + I KG VY+A + G E A+K++ + I+ E+ L+K
Sbjct: 3 EILEKIGKGGFGEVYKARHKRTGKEVAIKVI-KLESKEKKEKIIN----EIQILKK---- 53
Query: 1378 NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLF 1437
HPN+V + G Y + L+
Sbjct: 54 -----CK-------HPNIVKYY----------------------------GSYLKKDELW 73
Query: 1438 ILMKKYN-TDLRNYLRERCAQLSMHERILLFT--QLLEGVTHLNMHRTAHRDLKSDNILL 1494
I+M+ + L++ L+ L+ E + + +LL+G+ +L+ + HRD+K+ NILL
Sbjct: 74 IVMEFCSGGSLKDLLKSTNQTLT--ESQIAYVCKELLKGLEYLHSNGIIHRDIKAANILL 131
Query: 1495 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 1554
+ ++ + DFG S A + G MAPEV P
Sbjct: 132 -----TSDGEVKLIDFGLSAQLSDT------KARNTMVGTPYWMAPEVINGKP------- 173
Query: 1555 YS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYWHRKWLWQHLVYSHSSTTPSTVAYEIF 1613
Y K+D W+ G A E+ P+ + P ++I
Sbjct: 174 YDYKADIWSLGITAIELAEGKPPYSEL-----------------------PPMKALFKIA 210
Query: 1614 GHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 1663
+ P ++ + + + K L+ +P RP+AE
Sbjct: 211 TNGPPGLRN--------------PEKWSDEFKDFLKKCLQKNPEKRPTAE 246
Score = 36.0 bits (84), Expect = 0.13
Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 29/126 (23%)
Query: 221 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGT 279
+ DFG S A + G MAPEV P Y K+D W+ G
Sbjct: 139 LIDFGLSAQLSDT------KARNTMVGTPYWMAPEVINGKP-------YDYKADIWSLGI 185
Query: 280 VAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVP----------EVMRRLVAKLLENDPS 329
A E+ P+ + + AL ++ TN P + + + K L+ +P
Sbjct: 186 TAIELAEGKPPYSELPP-----MKALFKIATNGPPGLRNPEKWSDEFKDFLKKCLQKNPE 240
Query: 330 DRPSAE 335
RP+AE
Sbjct: 241 KRPTAE 246
Score = 36.0 bits (84), Expect = 0.13
Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 29/126 (23%)
Query: 662 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGT 720
+ DFG S A + G MAPEV P Y K+D W+ G
Sbjct: 139 LIDFGLSAQLSDT------KARNTMVGTPYWMAPEVINGKP-------YDYKADIWSLGI 185
Query: 721 VAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVP----------EVMRRLVAKLLENDPS 770
A E+ P+ + + AL ++ TN P + + + K L+ +P
Sbjct: 186 TAIELAEGKPPYSELPP-----MKALFKIATNGPPGLRNPEKWSDEFKDFLKKCLQKNPE 240
Query: 771 DRPSAE 776
RP+AE
Sbjct: 241 KRPTAE 246
>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional.
Length = 496
Score = 64.5 bits (157), Expect = 3e-10
Identities = 62/201 (30%), Positives = 89/201 (44%), Gaps = 36/201 (17%)
Query: 925 DLRNYLRERCAQ---LSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTC 981
DLR ++ R HE LLF Q+L V H++ HRD+KS NILL CS N
Sbjct: 125 DLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILL-CS--NGL 181
Query: 982 PQLVITDFGSSYTNKSGLSMQYS---SADI--ELGGNVALMAPEVALATPGLFSFVNYS- 1035
+L DF G S Y+ S D+ G +APE+ P YS
Sbjct: 182 VKL--GDF--------GFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKP-------YSK 224
Query: 1036 KSDAWTAGTVAYEIFGHDNPF----YQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLEN 1091
K+D ++ G + YE+ PF + + P + PE M+ +V LL +
Sbjct: 225 KADMFSLGVLLYELLTLKRPFDGENMEEVMHKTLAGRYDPLPPSISPE-MQEIVTALLSS 283
Query: 1092 DPSDRPSAE--LAATVCQLYL 1110
DP RPS+ L +C+L++
Sbjct: 284 DPKRRPSSSKLLNMPICKLFI 304
Score = 55.3 bits (133), Expect = 2e-07
Identities = 68/239 (28%), Positives = 97/239 (40%), Gaps = 70/239 (29%)
Query: 1446 DLRNYLRERCAQ---LSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTC 1502
DLR ++ R HE LLF Q+L V H++ HRD+KS NILL CS N
Sbjct: 125 DLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILL-CS--NGL 181
Query: 1503 PQLVITDFGSSYTNKSGLSMQYS---SADI--ELGGNVALMAPEVALATPGLFSFVNYS- 1556
+L DF G S Y+ S D+ G +APE+ P YS
Sbjct: 182 VKL--GDF--------GFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKP-------YSK 224
Query: 1557 KSDAWTAGTVAYEIFGHDNPFYQSARNTDYWHRKWLWQHLVYSHSSTTPSTVAYEIFGHD 1616
K+D ++ G + YE+ PF + H+ T+A G
Sbjct: 225 KADMFSLGVLLYELLTLKRPF-DGENMEEVMHK-----------------TLA----GRY 262
Query: 1617 NPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE--LAATVCQLYL 1673
+P LP + PE M+ +V LL +DP RPS+ L +C+L++
Sbjct: 263 DP--------------LP--PSISPE-MQEIVTALLSSDPKRRPSSSKLLNMPICKLFI 304
Score = 35.2 bits (81), Expect = 0.36
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 15/101 (14%)
Query: 252 MAPEVALATPGLFSFVNYSK-SDAWTAGTVAYEIFGHDNPF----YQSARNTDYEVNALP 306
+APE+ P YSK +D ++ G + YE+ PF + + P
Sbjct: 212 VAPEIWRRKP-------YSKKADMFSLGVLLYELLTLKRPFDGENMEEVMHKTLAGRYDP 264
Query: 307 QLNTNVPEVMRRLVAKLLENDPSDRPSAE--LAATVCQLYL 345
+ PE M+ +V LL +DP RPS+ L +C+L++
Sbjct: 265 LPPSISPE-MQEIVTALLSSDPKRRPSSSKLLNMPICKLFI 304
Score = 35.2 bits (81), Expect = 0.36
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 15/101 (14%)
Query: 693 MAPEVALATPGLFSFVNYSK-SDAWTAGTVAYEIFGHDNPF----YQSARNTDYEVNALP 747
+APE+ P YSK +D ++ G + YE+ PF + + P
Sbjct: 212 VAPEIWRRKP-------YSKKADMFSLGVLLYELLTLKRPFDGENMEEVMHKTLAGRYDP 264
Query: 748 QLNTNVPEVMRRLVAKLLENDPSDRPSAE--LAATVCQLYL 786
+ PE M+ +V LL +DP RPS+ L +C+L++
Sbjct: 265 LPPSISPE-MQEIVTALLSSDPKRRPSSSKLLNMPICKLFI 304
>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases. Protein
Tyrosine Kinase (PTK) family, catalytic domain. This PTKc
family is part of a larger superfamily that includes the
catalytic domains of protein serine/threonine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
They can be classified into receptor and non-receptor tyr
kinases. PTKs play important roles in many cellular
processes including, lymphocyte activation, epithelium
growth and maintenance, metabolism control, organogenesis
regulation, survival, proliferation, differentiation,
migration, adhesion, motility, and morphogenesis.
Receptor tyr kinases (RTKs) are integral membrane
proteins which contain an extracellular ligand-binding
region, a transmembrane segment, and an intracellular tyr
kinase domain. RTKs are usually activated through ligand
binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain, leading to intracellular signaling.
Some RTKs are orphan receptors with no known ligands.
Non-receptor (or cytoplasmic) tyr kinases are distributed
in different intracellular compartments and are usually
multi-domain proteins containing a catalytic tyr kinase
domain as well as various regulatory domains such as SH3
and SH2. PTKs are usually autoinhibited and require a
mechanism for activation. In many PTKs, the
phosphorylation of tyr residues in the activation loop is
essential for optimal activity. Aberrant expression of
PTKs is associated with many development abnormalities
and cancers.
Length = 262
Score = 62.6 bits (153), Expect = 3e-10
Identities = 58/198 (29%), Positives = 79/198 (39%), Gaps = 46/198 (23%)
Query: 923 NTDLRNYLRE-RCAQLSMHERILLFTQLLE-------GVTHLNMHRTAHRDLKSDNILLD 974
DL +YLR+ R S + L LL G+ +L + HRDL + N L+
Sbjct: 80 GGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRDLAARNCLVG 139
Query: 975 CSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSADIELGGNVAL----MAPEVALATPGLF 1029
ED I+DFG S Y L MAPE +L G+F
Sbjct: 140 --EDLVVK---ISDFGLSRDV--------YDDDYYRKKTGGKLPIRWMAPE-SLKD-GIF 184
Query: 1030 SFVNYSKSDAWTAGTVAYEIF--GHDNPFYQSARNTDYEV-------NALPQLNTNVPEV 1080
+ SKSD W+ G + +EIF G P Y N EV LP+ P+
Sbjct: 185 T----SKSDVWSFGVLLWEIFTLG-ATP-YPGLSNE--EVLEYLRKGYRLPKP-EYCPDE 235
Query: 1081 MRRLVAKLLENDPSDRPS 1098
+ L+ + DP DRP+
Sbjct: 236 LYELMLSCWQLDPEDRPT 253
Score = 59.5 bits (145), Expect = 3e-09
Identities = 61/262 (23%), Positives = 87/262 (33%), Gaps = 92/262 (35%)
Query: 1332 VVYEATFRGVEY-----ALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSV 1386
VY+ +G + A+K + + S K KE +M +
Sbjct: 10 EVYKGKLKGKDGKTTEVAVKTLKEDA----SEEERKDFLKEA------------RVMKKL 53
Query: 1387 ENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGY----GRNMSLFILMKK 1442
HPNVV L+ G + M+
Sbjct: 54 G----HPNVV----------------RLL-------------GVCTEEEPLYLVLEYME- 79
Query: 1443 YNTDLRNYLRE-RCAQLSMHERILLFTQLLE-------GVTHLNMHRTAHRDLKSDNILL 1494
DL +YLR+ R S + L LL G+ +L + HRDL + N L+
Sbjct: 80 -GGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRDLAARNCLV 138
Query: 1495 DCSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSADIELGGNVAL----MAPEVALATPGL 1549
ED I+DFG S Y L MAPE +L G+
Sbjct: 139 G--EDLVVK---ISDFGLSRDV--------YDDDYYRKKTGGKLPIRWMAPE-SLKD-GI 183
Query: 1550 FSFVNYSKSDAWTAGTVAYEIF 1571
F+ SKSD W+ G + +EIF
Sbjct: 184 FT----SKSDVWSFGVLLWEIF 201
Score = 37.9 bits (89), Expect = 0.034
Identities = 38/127 (29%), Positives = 51/127 (40%), Gaps = 33/127 (25%)
Query: 221 ITDFG-SSYTNKSGLSMQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSDAW 275
I+DFG S Y L MAPE +L G+F+ SKSD W
Sbjct: 146 ISDFGLSRDV--------YDDDYYRKKTGGKLPIRWMAPE-SLKD-GIFT----SKSDVW 191
Query: 276 TAGTVAYEIF--GHDNPFYQSARNTDYEV-------NALPQLNTNVPEVMRRLVAKLLEN 326
+ G + +EIF G P Y N EV LP+ P+ + L+ +
Sbjct: 192 SFGVLLWEIFTLG-ATP-YPGLSNE--EVLEYLRKGYRLPKP-EYCPDELYELMLSCWQL 246
Query: 327 DPSDRPS 333
DP DRP+
Sbjct: 247 DPEDRPT 253
Score = 37.9 bits (89), Expect = 0.034
Identities = 38/127 (29%), Positives = 51/127 (40%), Gaps = 33/127 (25%)
Query: 662 ITDFG-SSYTNKSGLSMQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSDAW 716
I+DFG S Y L MAPE +L G+F+ SKSD W
Sbjct: 146 ISDFGLSRDV--------YDDDYYRKKTGGKLPIRWMAPE-SLKD-GIFT----SKSDVW 191
Query: 717 TAGTVAYEIF--GHDNPFYQSARNTDYEV-------NALPQLNTNVPEVMRRLVAKLLEN 767
+ G + +EIF G P Y N EV LP+ P+ + L+ +
Sbjct: 192 SFGVLLWEIFTLG-ATP-YPGLSNE--EVLEYLRKGYRLPKP-EYCPDELYELMLSCWQL 246
Query: 768 DPSDRPS 774
DP DRP+
Sbjct: 247 DPEDRPT 253
>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine
Kinase, Never In Mitosis gene A-related kinase 8.
Serine/Threonine Kinases (STKs), Never In Mitosis gene A
(NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek8 subfamily is one
of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part of
a larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek8 contains an
N-terminal kinase catalytic domain and a C-terminal RCC1
(regulator of chromosome condensation) domain. A double
point mutation in Nek8 causes cystic kidney disease in
mice that genetically resembles human autosomal recessive
polycystic kidney disease (ARPKD). Nek8 is also
associated with a rare form of juvenile renal cystic
disease, nephronophthisis type 9. It has been suggested
that a defect in the ciliary localization of Nek8
contributes to the development of cysts manifested by
these diseases.
Length = 256
Score = 61.8 bits (150), Expect = 5e-10
Identities = 54/186 (29%), Positives = 76/186 (40%), Gaps = 40/186 (21%)
Query: 926 LRNYLRERCAQLSMHERIL-LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 984
L Y+++RC L + IL F Q+L + H++ HRDLK+ NILLD + +
Sbjct: 86 LAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKM----VV 141
Query: 985 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAG 1043
I DFG S S S + G ++PE+ P Y+ KSD W G
Sbjct: 142 KIGDFGISKILSS------KSKAYTVVGTPCYISPELCEGKP-------YNQKSDIWALG 188
Query: 1044 TVAYEIFGHDNPFYQSARNTDYEVNALPQL------------NTNVPEVMRRLVAKLLEN 1091
V YE+ F E LP L + +R+L+ +L
Sbjct: 189 CVLYELASLKRAF---------EAANLPALVLKIMSGTFAPISDRYSPDLRQLILSMLNL 239
Query: 1092 DPSDRP 1097
DPS RP
Sbjct: 240 DPSKRP 245
Score = 54.5 bits (131), Expect = 1e-07
Identities = 54/216 (25%), Positives = 81/216 (37%), Gaps = 58/216 (26%)
Query: 1447 LRNYLRERCAQLSMHERIL-LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 1505
L Y+++RC L + IL F Q+L + H++ HRDLK+ NILLD + +
Sbjct: 86 LAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKM----VV 141
Query: 1506 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAG 1564
I DFG S S S + G ++PE+ P Y+ KSD W G
Sbjct: 142 KIGDFGISKILSS------KSKAYTVVGTPCYISPELCEGKP-------YNQKSDIWALG 188
Query: 1565 TVAYEIFGHDNPFYQSARNTDYWHRKWLWQHLVYSHSSTTPSTVAYEIFGHDNPFYQSAR 1624
V YE+ F ++ P+ V + G P
Sbjct: 189 CVLYELASLKRAF----------------------EAANLPALVLKIMSGTFAP------ 220
Query: 1625 NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP 1660
++ +R+L+ +L DPS RP
Sbjct: 221 -----------ISDRYSPDLRQLILSMLNLDPSKRP 245
Score = 30.6 bits (69), Expect = 7.0
Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 21/74 (28%)
Query: 271 KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQL------------NTNVPEVMRR 318
KSD W G V YE+ F E LP L + +R+
Sbjct: 181 KSDIWALGCVLYELASLKRAF---------EAANLPALVLKIMSGTFAPISDRYSPDLRQ 231
Query: 319 LVAKLLENDPSDRP 332
L+ +L DPS RP
Sbjct: 232 LILSMLNLDPSKRP 245
Score = 30.6 bits (69), Expect = 7.0
Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 21/74 (28%)
Query: 712 KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQL------------NTNVPEVMRR 759
KSD W G V YE+ F E LP L + +R+
Sbjct: 181 KSDIWALGCVLYELASLKRAF---------EAANLPALVLKIMSGTFAPISDRYSPDLRQ 231
Query: 760 LVAKLLENDPSDRP 773
L+ +L DPS RP
Sbjct: 232 LILSMLNLDPSKRP 245
>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine
Kinase, p21-activated kinase. Serine/threonine kinases
(STKs), p21-activated kinase (PAK) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PAK subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PAKs are Rho
family GTPase-regulated kinases that serve as important
mediators in the function of Cdc42 (cell division cycle
42) and Rac. PAKs are implicated in the regulation of
many cellular processes including growth factor
receptor-mediated proliferation, cell polarity, cell
motility, cell death and survival, and actin cytoskeleton
organization. PAK deregulation is associated with tumor
development. PAKs from higher eukaryotes are classified
into two groups (I and II), according to their
biochemical and structural features. Group I PAKs contain
a PBD (p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). Group II PAKs
contain a PBD and a catalytic domain, but lack other
motifs found in group I PAKs. Since group II PAKs do not
contain an obvious AID, they may be regulated differently
from group I PAKs. Group I PAKs interact with the SH3
containing proteins Nck, Grb2 and PIX; no such binding
has been demonstrated for group II PAKs.
Length = 286
Score = 61.8 bits (151), Expect = 6e-10
Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 33/164 (20%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
++L+G+ +L+ HRD+KSDNILL S+D + + DFG + S + S
Sbjct: 124 EVLQGLEYLHSQNVIHRDIKSDNILL--SKDGSVK---LADFGFAAQLTKEKSKRNS--- 175
Query: 1008 IELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 1066
+ G MAPEV Y K D W+ G + E+ + P+ +
Sbjct: 176 --VVGTPYWMAPEVIKRKD-------YGPKVDIWSLGIMCIEMAEGEPPYL-----REPP 221
Query: 1067 VNALPQLNTN-VPEV---------MRRLVAKLLENDPSDRPSAE 1100
+ AL + T +P + + + K L DP RPSAE
Sbjct: 222 LRALFLITTKGIPPLKNPEKWSPEFKDFLNKCLVKDPEKRPSAE 265
Score = 55.7 bits (135), Expect = 7e-08
Identities = 66/255 (25%), Positives = 106/255 (41%), Gaps = 81/255 (31%)
Query: 1325 IAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDML 1382
I +G + VY+AT R G E A+K M L+ +KEL+ +NE ++
Sbjct: 27 IGEGASGEVYKATDRATGKEVAIKKM-----------RLRKQNKELI-------INEILI 68
Query: 1383 MNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKK 1442
M + HPN+V D+ DS L+ G L+++M+
Sbjct: 69 MKDCK----HPNIV-------DYY----DSYLV------------GDE-----LWVVMEY 96
Query: 1443 YN----TDLRNYLRERCAQLSMHERILLF--TQLLEGVTHLNMHRTAHRDLKSDNILLDC 1496
+ TD+ + M+E + + ++L+G+ +L+ HRD+KSDNILL
Sbjct: 97 MDGGSLTDIITQNF-----VRMNEPQIAYVCREVLQGLEYLHSQNVIHRDIKSDNILL-- 149
Query: 1497 SEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS 1556
S+D + + DFG + S + S + G MAPEV Y
Sbjct: 150 SKDGSVK---LADFGFAAQLTKEKSKRNS-----VVGTPYWMAPEVIKRKD-------YG 194
Query: 1557 -KSDAWTAGTVAYEI 1570
K D W+ G + E+
Sbjct: 195 PKVDIWSLGIMCIEM 209
Score = 36.0 bits (84), Expect = 0.15
Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 23/95 (24%)
Query: 252 MAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNT 310
MAPEV Y K D W+ G + E+ + P+ + + AL + T
Sbjct: 183 MAPEVIKRKD-------YGPKVDIWSLGIMCIEMAEGEPPYL-----REPPLRALFLITT 230
Query: 311 N-VPEV---------MRRLVAKLLENDPSDRPSAE 335
+P + + + K L DP RPSAE
Sbjct: 231 KGIPPLKNPEKWSPEFKDFLNKCLVKDPEKRPSAE 265
Score = 36.0 bits (84), Expect = 0.15
Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 23/95 (24%)
Query: 693 MAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNT 751
MAPEV Y K D W+ G + E+ + P+ + + AL + T
Sbjct: 183 MAPEVIKRKD-------YGPKVDIWSLGIMCIEMAEGEPPYL-----REPPLRALFLITT 230
Query: 752 N-VPEV---------MRRLVAKLLENDPSDRPSAE 776
+P + + + K L DP RPSAE
Sbjct: 231 KGIPPLKNPEKWSPEFKDFLNKCLVKDPEKRPSAE 265
>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein
Serine/Threonine Kinases, Oxidative stress response
kinase and Ste20-related proline alanine-rich kinase.
Serine/threonine kinases (STKs), oxidative stress
response kinase (OSR1) and Ste20-related proline
alanine-rich kinase (SPAK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The OSR1 and SPAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. SPAK is also referred to as STK39 or PASK
(proline-alanine-rich STE20-related kinase). OSR1 and
SPAK regulate the activity of cation-chloride
cotransporters through direct interaction and
phosphorylation. They are also implicated in cytoskeletal
rearrangement, cell differentiation, transformation and
proliferation. OSR1 and SPAK contain a conserved
C-terminal (CCT) domain, which recognizes a unique motif
([RK]FX[VI]) present in their activating kinases
(WNK1/WNK4) and their substrates.
Length = 267
Score = 61.6 bits (150), Expect = 6e-10
Identities = 66/246 (26%), Positives = 94/246 (38%), Gaps = 60/246 (24%)
Query: 871 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMK-KYNTDLRNY 929
HPNVV + +F L + GG SL +MK Y
Sbjct: 58 HPNVVKYYTSFVV------GDELWLVMPYLS-----GG-----SLLDIMKSSYPRGG--- 98
Query: 930 LRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDF 989
L E + E +L+G+ +L+ + HRD+K+ NILL ED + + I DF
Sbjct: 99 LDEAIIATVLKE-------VLKGLEYLHSNGQIHRDIKAGNILLG--EDGS---VKIADF 146
Query: 990 GSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAGTVAYE 1048
G S + G G MAPEV G Y K+D W+ G A E
Sbjct: 147 GVSASLADGGDRT-RKVRKTFVGTPCWMAPEVMEQVHG------YDFKADIWSFGITAIE 199
Query: 1049 IFGHDNPFYQSARNTDY---EV------NALPQLNTNVP-----EVMRRLVAKLLENDPS 1094
+ P+ Y +V N P L T + R++++ L+ DPS
Sbjct: 200 LATGAAPYS------KYPPMKVLMLTLQNDPPSLETGADYKKYSKSFRKMISLCLQKDPS 253
Query: 1095 DRPSAE 1100
RP+AE
Sbjct: 254 KRPTAE 259
Score = 56.6 bits (137), Expect = 3e-08
Identities = 81/351 (23%), Positives = 122/351 (34%), Gaps = 96/351 (27%)
Query: 1317 DDIQIGKFIAKGTNAVVYEATF--RGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 1374
DD ++ + I G AVVY A + A+K + L+ + LRK
Sbjct: 1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRI-----------DLEKCQTSVDELRK- 48
Query: 1375 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNM 1434
E M+ HPNVV + +F L + GG
Sbjct: 49 ----EVQAMSQCN----HPNVVKYYTSFVV------GDELWLVMPYLS-----GG----- 84
Query: 1435 SLFILMK-KYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNIL 1493
SL +MK Y L E + E +L+G+ +L+ + HRD+K+ NIL
Sbjct: 85 SLLDIMKSSYPRGG---LDEAIIATVLKE-------VLKGLEYLHSNGQIHRDIKAGNIL 134
Query: 1494 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV 1553
L ED + + I DFG S + G G MAPEV G
Sbjct: 135 LG--EDGS---VKIADFGVSASLADGGDRT-RKVRKTFVGTPCWMAPEVMEQVHG----- 183
Query: 1554 NY-SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYWHRKWLWQHLVYSHSSTTPSTVAYEI 1612
Y K+D W+ G A E+ P+ Y K L + + + + Y+
Sbjct: 184 -YDFKADIWSFGITAIELATGAAPYS------KYPPMKVLML-TLQNDPPSLETGADYKK 235
Query: 1613 FGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 1663
+ R++++ L+ DPS RP+AE
Sbjct: 236 YSK---------------------------SFRKMISLCLQKDPSKRPTAE 259
Score = 37.3 bits (87), Expect = 0.053
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 27/99 (27%)
Query: 252 MAPEVALATPGLFSFVNY-SKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---EV----- 302
MAPEV G Y K+D W+ G A E+ P+ Y +V
Sbjct: 173 MAPEVMEQVHG------YDFKADIWSFGITAIELATGAAPYS------KYPPMKVLMLTL 220
Query: 303 -NALPQLNTNVP-----EVMRRLVAKLLENDPSDRPSAE 335
N P L T + R++++ L+ DPS RP+AE
Sbjct: 221 QNDPPSLETGADYKKYSKSFRKMISLCLQKDPSKRPTAE 259
Score = 37.3 bits (87), Expect = 0.053
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 27/99 (27%)
Query: 693 MAPEVALATPGLFSFVNY-SKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---EV----- 743
MAPEV G Y K+D W+ G A E+ P+ Y +V
Sbjct: 173 MAPEVMEQVHG------YDFKADIWSFGITAIELATGAAPYS------KYPPMKVLMLTL 220
Query: 744 -NALPQLNTNVP-----EVMRRLVAKLLENDPSDRPSAE 776
N P L T + R++++ L+ DPS RP+AE
Sbjct: 221 QNDPPSLETGADYKKYSKSFRKMISLCLQKDPSKRPTAE 259
>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like
MAP Kinase Kinase Kinases. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase (MAPKKK) subfamily, fungal Byr2-like proteins,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAPKKK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
group include the MAPKKKs Schizosaccharomyces pombe Byr2,
Saccharomyces cerevisiae and Cryptococcus neoformans
Ste11, and related proteins. They contain an N-terminal
SAM (sterile alpha-motif) domain, which mediates
protein-protein interaction, and a C-terminal catalytic
domain. MAPKKKs phosphorylate and activate MAPK kinases
(MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate
and activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. Fission yeast Byr2 is regulated by
Ras1. It responds to pheromone signaling and controls
mating through the MAPK pathway. Budding yeast Ste11
functions in MAPK cascades that regulate mating, high
osmolarity glycerol, and filamentous growth responses.
Length = 267
Score = 61.4 bits (149), Expect = 7e-10
Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 23/160 (14%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSA 1006
Q+L+G+ +L+ HRD+K NIL+D + I+DFG S + LS + + A
Sbjct: 114 QILKGLNYLHNRGIIHRDIKGANILVDNKG-----GIKISDFGISKKLEANSLSTKTNGA 168
Query: 1007 DIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDY 1065
L G+V MAPEV T +Y+ K+D W+ G + E+ +PF T
Sbjct: 169 RPSLQGSVFWMAPEVVKQT-------SYTRKADIWSLGCLVVEMLTGKHPF---PDCTQL 218
Query: 1066 EV------NALPQLNTNVPEVMRRLVAKLLENDPSDRPSA 1099
+ NA P++ +N+ + K E D + RP+A
Sbjct: 219 QAIFKIGENASPEIPSNISSEAIDFLEKTFEIDHNKRPTA 258
Score = 54.1 bits (130), Expect = 2e-07
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 14/111 (12%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSA 1527
Q+L+G+ +L+ HRD+K NIL+D + I+DFG S + LS + + A
Sbjct: 114 QILKGLNYLHNRGIIHRDIKGANILVDNKG-----GIKISDFGISKKLEANSLSTKTNGA 168
Query: 1528 DIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPF 1577
L G+V MAPEV T +Y+ K+D W+ G + E+ +PF
Sbjct: 169 RPSLQGSVFWMAPEVVKQT-------SYTRKADIWSLGCLVVEMLTGKHPF 212
Score = 42.1 bits (99), Expect = 0.001
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 18/122 (14%)
Query: 221 ITDFG-SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAG 278
I+DFG S + LS + + A L G+V MAPEV T +Y+ K+D W+ G
Sbjct: 147 ISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQT-------SYTRKADIWSLG 199
Query: 279 TVAYEIFGHDNPFYQSARNTDYEV------NALPQLNTNVPEVMRRLVAKLLENDPSDRP 332
+ E+ +PF T + NA P++ +N+ + K E D + RP
Sbjct: 200 CLVVEMLTGKHPF---PDCTQLQAIFKIGENASPEIPSNISSEAIDFLEKTFEIDHNKRP 256
Query: 333 SA 334
+A
Sbjct: 257 TA 258
Score = 42.1 bits (99), Expect = 0.001
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 18/122 (14%)
Query: 662 ITDFG-SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAG 719
I+DFG S + LS + + A L G+V MAPEV T +Y+ K+D W+ G
Sbjct: 147 ISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQT-------SYTRKADIWSLG 199
Query: 720 TVAYEIFGHDNPFYQSARNTDYEV------NALPQLNTNVPEVMRRLVAKLLENDPSDRP 773
+ E+ +PF T + NA P++ +N+ + K E D + RP
Sbjct: 200 CLVVEMLTGKHPF---PDCTQLQAIFKIGENASPEIPSNISSEAIDFLEKTFEIDHNKRP 256
Query: 774 SA 775
+A
Sbjct: 257 TA 258
>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein
Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2,
and similar domains. Serine/Threonine Kinases (STKs),
Chlamydomonas reinhardtii Never In Mitosis gene A
(NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Chlamydomonas
reinhardtii CNK2-like subfamily belongs to the
(NIMA)-related kinase (Nek) family. The Nek family
includes seven different Chlamydomonas Neks (CNKs 1-6 and
Fa2). This subfamily includes CNK1, and -2. The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase.
Chlamydomonas reinhardtii CNK2 has both cilliary and cell
cycle functions. It influences flagellar length through
promoting flagellar disassembly, and it regulates cell
size, through influencing the size threshold at which
cells commit to mitosis.
Length = 256
Score = 61.3 bits (149), Expect = 8e-10
Identities = 69/269 (25%), Positives = 107/269 (39%), Gaps = 61/269 (22%)
Query: 839 LKRAEFRLITNALQYIQRNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSA 898
LK + ++ + NE ++ SV HPN++ AF D
Sbjct: 30 LKEVDLGSMSQKEREDAVNEIRILASVN----HPNIISYKEAFLD--------------- 70
Query: 899 LPARLNPTGGYGRNMSLFILMKKY--NTDLRNYLRERCAQLSMHERILL---FTQLLEGV 953
G L I+M+ Y DL + +R + + + F QLL G+
Sbjct: 71 -----------GN--KLCIVME-YAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGL 116
Query: 954 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGN 1013
L+ + HRDLKS NILL + D + I D G S K + A ++ G
Sbjct: 117 QALHEQKILHRDLKSANILL-VAND----LVKIGDLGISKVLKKNM------AKTQI-GT 164
Query: 1014 VALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFY-QSARNTDYEV--NA 1069
MAPEV P YS KSD W+ G + YE+ PF +S ++ Y+V
Sbjct: 165 PHYMAPEVWKGRP-------YSYKSDIWSLGCLLYEMATFAPPFEARSMQDLRYKVQRGK 217
Query: 1070 LPQLNTNVPEVMRRLVAKLLENDPSDRPS 1098
P + + ++ + +L+ P RP+
Sbjct: 218 YPPIPPIYSQDLQNFIRSMLQVKPKLRPN 246
Score = 55.1 bits (133), Expect = 7e-08
Identities = 73/269 (27%), Positives = 106/269 (39%), Gaps = 77/269 (28%)
Query: 1318 DIQIGKFIAKGTNAVVYEATFR---GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 1374
D ++ K + KG+ VY+ R YALK + L +MS++ +
Sbjct: 1 DFKVLKKLGKGSYGSVYKVK-RLSDNQFYALKEV-----------DLGSMSQK----ERE 44
Query: 1375 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNM 1434
+NE ++ SV HPN++ AF D G
Sbjct: 45 DAVNEIRILASVN----HPNIISYKEAFLD--------------------------GN-- 72
Query: 1435 SLFILMKKY--NTDLRNYLRERCAQLSMHERILL---FTQLLEGVTHLNMHRTAHRDLKS 1489
L I+M+ Y DL + +R + + + F QLL G+ L+ + HRDLKS
Sbjct: 73 KLCIVME-YAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQKILHRDLKS 131
Query: 1490 DNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL 1549
NILL + D + I D G S K + A ++ G MAPEV P
Sbjct: 132 ANILL-VAND----LVKIGDLGISKVLKKNM------AKTQI-GTPHYMAPEVWKGRP-- 177
Query: 1550 FSFVNYS-KSDAWTAGTVAYEIFGHDNPF 1577
YS KSD W+ G + YE+ PF
Sbjct: 178 -----YSYKSDIWSLGCLLYEMATFAPPF 201
Score = 36.3 bits (84), Expect = 0.11
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 252 MAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFY-QSARNTDYEV--NALPQ 307
MAPEV P YS KSD W+ G + YE+ PF +S ++ Y+V P
Sbjct: 168 MAPEVWKGRP-------YSYKSDIWSLGCLLYEMATFAPPFEARSMQDLRYKVQRGKYPP 220
Query: 308 LNTNVPEVMRRLVAKLLENDPSDRPS 333
+ + ++ + +L+ P RP+
Sbjct: 221 IPPIYSQDLQNFIRSMLQVKPKLRPN 246
Score = 36.3 bits (84), Expect = 0.11
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 693 MAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFY-QSARNTDYEV--NALPQ 748
MAPEV P YS KSD W+ G + YE+ PF +S ++ Y+V P
Sbjct: 168 MAPEVWKGRP-------YSYKSDIWSLGCLLYEMATFAPPFEARSMQDLRYKVQRGKYPP 220
Query: 749 LNTNVPEVMRRLVAKLLENDPSDRPS 774
+ + ++ + +L+ P RP+
Sbjct: 221 IPPIYSQDLQNFIRSMLQVKPKLRPN 246
>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent
protein Kinase 4 and 6-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-dependent protein
kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK4/6-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. CDKs
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, they are involved in the
control of cell-cycle progression, transcription, and
neuronal function. CDK4 and CDK6 partner with D-type
cyclins to regulate the early G1 phase of the cell cycle.
They are the first kinase activated by mitogenic signals
to release cells from the G0 arrested state. CDK4 and
CDK6 are both expressed ubiquitously, associate with all
three D cyclins (D1, D2 and D3), and phosphorylate the
retinoblastoma (pRb) protein. They are also regulated by
the INK4 family of inhibitors which associate with either
the CDK alone or the CDK/cyclin complex. CDK4 and CDK6
show differences in subcellular localization, sensitivity
to some inhibitors, timing in activation, tumor
selectivity, and possibly substrate profiles. Although
CDK4 and CDK6 seem to show some redundancy, they also
have discrete, nonoverlapping functions. CDK6 plays an
important role in cell differentiation.
Length = 287
Score = 61.5 bits (150), Expect = 9e-10
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 26/147 (17%)
Query: 909 YGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERIL--LFTQLLEGVTHLNMHRTAHRDL 966
R + L ++ + + DL YL +C + + + L QLL GV L+ HR HRDL
Sbjct: 75 TDRELKLTLVFEHVDQDLATYL-SKCPKPGLPPETIKDLMRQLLRGVDFLHSHRIVHRDL 133
Query: 967 KSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVAL 1023
K NIL+ Q+ I DF GL+ YS ++ L V + APEV L
Sbjct: 134 KPQNILVTSDG-----QVKIADF--------GLARIYSF-EMALTSVVVTLWYRAPEVLL 179
Query: 1024 ATPGLFSFVNYSKSDAWTAGTVAYEIF 1050
+ D W+ G + E+F
Sbjct: 180 QSSYATPV------DMWSVGCIFAELF 200
Score = 61.5 bits (150), Expect = 9e-10
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 26/147 (17%)
Query: 1430 YGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERIL--LFTQLLEGVTHLNMHRTAHRDL 1487
R + L ++ + + DL YL +C + + + L QLL GV L+ HR HRDL
Sbjct: 75 TDRELKLTLVFEHVDQDLATYL-SKCPKPGLPPETIKDLMRQLLRGVDFLHSHRIVHRDL 133
Query: 1488 KSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVAL 1544
K NIL+ Q+ I DF GL+ YS ++ L V + APEV L
Sbjct: 134 KPQNILVTSDG-----QVKIADF--------GLARIYSF-EMALTSVVVTLWYRAPEVLL 179
Query: 1545 ATPGLFSFVNYSKSDAWTAGTVAYEIF 1571
+ D W+ G + E+F
Sbjct: 180 QSSYATPV------DMWSVGCIFAELF 200
>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated
serine/threonine kinase-like proteins. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MAST kinase subfamily
includes MAST kinases, MAST-like (MASTL) kinases, and
fungal kinases with similarity to Saccharomyces
cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST
kinases contain an N-terminal domain of unknown function,
a central catalytic domain, and a C-terminal PDZ domain
that mediates protein-protein interactions. MASTL kinases
carry only a catalytic domain which contains a long
insert relative to other kinases. The fungal kinases in
this subfamily harbor other domains in addition to a
central catalytic domain, which also contains an insert
relative to MAST kinases like MASTL. Rim15 contains a
C-terminal signal receiver (REC) domain while cek1
contains an N-terminal PAS domain. MAST kinases are
cytoskeletal associated kinases of unknown function that
are also expressed at neuromuscular junctions and
postsynaptic densities. The fungal proteins Rim15 and
cek1 are involved in the regulation of meiosis and
mitosis, respectively.
Length = 265
Score = 60.7 bits (148), Expect = 1e-09
Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 28/167 (16%)
Query: 946 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSY---TNKSGLSMQ 1002
+++ + +L+ + HRDLK DNIL+D + L +TDFG S +
Sbjct: 99 IAEIVLALEYLHSNGIIHRDLKPDNILIDSNG-----HLKLTDFGLSKVGLVRRQINLND 153
Query: 1003 YSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEI------FGHDNP 1055
D + G +APEV L +SK+ D W+ G + YE F + P
Sbjct: 154 DEKEDKRIVGTPDYIAPEVILGQ-------GHSKTVDWWSLGCILYEFLVGIPPFHGETP 206
Query: 1056 --FYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 1100
+Q+ N E P+ V + L++KLL DP R A+
Sbjct: 207 EEIFQNILNGKIE---WPED-VEVSDEAIDLISKLLVPDPEKRLGAK 249
Score = 51.5 bits (124), Expect = 1e-06
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 16/115 (13%)
Query: 1467 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSY---TNKSGLSMQ 1523
+++ + +L+ + HRDLK DNIL+D + L +TDFG S +
Sbjct: 99 IAEIVLALEYLHSNGIIHRDLKPDNILIDSNG-----HLKLTDFGLSKVGLVRRQINLND 153
Query: 1524 YSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPF 1577
D + G +APEV L +SK+ D W+ G + YE PF
Sbjct: 154 DEKEDKRIVGTPDYIAPEVILGQ-------GHSKTVDWWSLGCILYEFLVGIPPF 201
Score = 39.5 bits (93), Expect = 0.011
Identities = 39/144 (27%), Positives = 58/144 (40%), Gaps = 27/144 (18%)
Query: 204 PDSSLIYPKDNTCPQLVITDFGSSY---TNKSGLSMQYSSADIELGGNVALMAPEVALAT 260
PD+ LI ++ L +TDFG S + D + G +APEV L
Sbjct: 121 PDNILI----DSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQ 176
Query: 261 PGLFSFVNYSKS-DAWTAGTVAYEI------FGHDNP--FYQSARNTDYEVNALPQLNTN 311
+SK+ D W+ G + YE F + P +Q+ N E P+
Sbjct: 177 -------GHSKTVDWWSLGCILYEFLVGIPPFHGETPEEIFQNILNGKIE---WPED-VE 225
Query: 312 VPEVMRRLVAKLLENDPSDRPSAE 335
V + L++KLL DP R A+
Sbjct: 226 VSDEAIDLISKLLVPDPEKRLGAK 249
Score = 39.5 bits (93), Expect = 0.011
Identities = 39/144 (27%), Positives = 58/144 (40%), Gaps = 27/144 (18%)
Query: 645 PDSSLIYPKDNTCPQLVITDFGSSY---TNKSGLSMQYSSADIELGGNVALMAPEVALAT 701
PD+ LI ++ L +TDFG S + D + G +APEV L
Sbjct: 121 PDNILI----DSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQ 176
Query: 702 PGLFSFVNYSKS-DAWTAGTVAYEI------FGHDNP--FYQSARNTDYEVNALPQLNTN 752
+SK+ D W+ G + YE F + P +Q+ N E P+
Sbjct: 177 -------GHSKTVDWWSLGCILYEFLVGIPPFHGETPEEIFQNILNGKIE---WPED-VE 225
Query: 753 VPEVMRRLVAKLLENDPSDRPSAE 776
V + L++KLL DP R A+
Sbjct: 226 VSDEAIDLISKLLVPDPEKRLGAK 249
>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase,
MAPK/MAK/MRK Overlapping Kinase. Serine/Threonine
Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MOK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MOK, also called Renal tumor antigen 1
(RAGE-1), is widely expressed and is enriched in testis,
kidney, lung, and brain. It is expressed in approximately
50% of renal cell carcinomas (RCC) and is a potential
target for immunotherapy. MOK is stabilized by its
association with the HSP90 molecular chaperone. It is
induced by the transcription factor Cdx2 and may be
involved in regulating intestinal epithelial development
and differentiation.
Length = 282
Score = 60.7 bits (148), Expect = 1e-09
Identities = 81/323 (25%), Positives = 120/323 (37%), Gaps = 82/323 (25%)
Query: 1356 NSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLI 1415
+AI K M K L + L E + L PHPN++ + + + L
Sbjct: 25 KYYAI-KCMKKHFKSLEQVNNLREIQALRR---LSPHPNILRLI----EVLFDRKTGRL- 75
Query: 1416 YPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERILLF-TQLLEGV 1474
AL L +M+L+ L+K + L E +R+ + QLL+ +
Sbjct: 76 ---ALVFEL-------MDMNLYELIK----GRKRPLPE--------KRVKSYMYQLLKSL 113
Query: 1475 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS--------YTNKSGLSMQYSS 1526
H++ + HRD+K +NIL+ D+ L + DFGS YT +Y S
Sbjct: 114 DHMHRNGIFHRDIKPENILIK---DDI---LKLADFGSCRGIYSKPPYT-------EYIS 160
Query: 1527 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY 1586
APE L T G + K D W G V +EI P + D
Sbjct: 161 TR-------WYRAPECLL-TDGYYGP----KMDIWAVGCVFFEILSL-FPLFPGTNELDQ 207
Query: 1587 WHRKWLWQHLVYSHSSTTPSTVAYEIF---GHDNPFYQSARNTDYEVNALPQLNTNVPEV 1643
+ H V TP + F H N + S + T L +L N
Sbjct: 208 IAKI----HDVLG----TPDAEVLKKFRKSRHMNYNFPSKKGT-----GLRKLLPNASAE 254
Query: 1644 MRRLVAKLLENDPSDRPSAELAA 1666
L+ KLL DP +R +A+ A
Sbjct: 255 GLDLLKKLLAYDPDERITAKQAL 277
Score = 54.2 bits (131), Expect = 2e-07
Identities = 66/276 (23%), Positives = 103/276 (37%), Gaps = 92/276 (33%)
Query: 868 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLR 927
L PHPN++ + + + L AL L +M+L+ L+K +
Sbjct: 54 LSPHPNILRLI----EVLFDRKTGRL----ALVFEL-------MDMNLYELIK----GRK 94
Query: 928 NYLRERCAQLSMHERILLF-TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVI 986
L E +R+ + QLL+ + H++ + HRD+K +NIL+ D+ L +
Sbjct: 95 RPLPE--------KRVKSYMYQLLKSLDHMHRNGIFHRDIKPENILIK---DDI---LKL 140
Query: 987 TDFGSS--------YTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSD 1038
DFGS YT +Y S APE L T G + K D
Sbjct: 141 ADFGSCRGIYSKPPYT-------EYISTR-------WYRAPECLL-TDGYYGP----KMD 181
Query: 1039 AWTAGTVAYEIFG-----------------HD---------NPFYQSARNTDYEVNA--- 1069
W G V +EI HD ++ +R+ +Y +
Sbjct: 182 IWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKG 241
Query: 1070 --LPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAA 1103
L +L N L+ KLL DP +R +A+ A
Sbjct: 242 TGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQAL 277
>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine
Kinases, Srm and Brk. Protein Tyrosine Kinase (PTK)
family; Src-related kinase lacking C-terminal regulatory
tyrosine and N-terminal myristylation sites (Srm) and
breast tumor kinase (Brk, also called protein tyrosine
kinase 6); catalytic (c) domains. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Srm and Brk are a member
of the Src subfamily of proteins, which are cytoplasmic
(or non-receptor) tyr kinases. Src kinases in general
contain an N-terminal SH4 domain with a myristoylation
site, followed by SH3 and SH2 domains, a tyr kinase
domain, and a regulatory C-terminal region containing a
conserved tyr; they are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated by
phosphorylation at the C-terminal tyr by Csk (C-terminal
Src Kinase). Srm and Brk however, lack the N-terminal
myristylation sites. Src proteins are involved in
signaling pathways that regulate cytokine and growth
factor responses, cytoskeleton dynamics, cell
proliferation, survival, and differentiation. Brk has
been found to be overexpressed in a majority of breast
tumors.
Length = 261
Score = 59.4 bits (144), Expect = 3e-09
Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 31/190 (16%)
Query: 918 LMKKYNTDLRNYLRERCAQ-LSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 976
LM+K + L +LR Q L + I + Q+ EG+ +L + HRDL + NIL+
Sbjct: 83 LMEKGS--LLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQNSIHRDLAARNILVG-- 138
Query: 977 EDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSK 1036
ED C + DFG + K + Y S+D ++ APE A+ G FS +K
Sbjct: 139 EDLVCK---VADFGLARLIKEDV---YLSSDKKI--PYKWTAPEA--ASHGTFS----TK 184
Query: 1037 SDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTN--------VPEVMRRLVAKL 1088
SD W+ G + YE+F + Y N + Q+ P+ + +++ +
Sbjct: 185 SDVWSFGILLYEMFTYGQVPYPGMNNHE----VYDQITAGYRMPCPAKCPQEIYKIMLEC 240
Query: 1089 LENDPSDRPS 1098
+P DRPS
Sbjct: 241 WAAEPEDRPS 250
Score = 55.9 bits (135), Expect = 5e-08
Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 19/146 (13%)
Query: 1439 LMKKYNTDLRNYLRERCAQ-LSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 1497
LM+K + L +LR Q L + I + Q+ EG+ +L + HRDL + NIL+
Sbjct: 83 LMEKGS--LLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQNSIHRDLAARNILVG-- 138
Query: 1498 EDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSK 1557
ED C + DFG + K + Y S+D ++ APE A+ G FS +K
Sbjct: 139 EDLVCK---VADFGLARLIKEDV---YLSSDKKI--PYKWTAPEA--ASHGTFS----TK 184
Query: 1558 SDAWTAGTVAYEIFGHDNPFYQSARN 1583
SD W+ G + YE+F + Y N
Sbjct: 185 SDVWSFGILLYEMFTYGQVPYPGMNN 210
Score = 32.8 bits (75), Expect = 1.3
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 23/121 (19%)
Query: 221 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTV 280
+ DFG + K + Y S+D ++ APE A + G FS +KSD W+ G +
Sbjct: 145 VADFGLARLIKEDV---YLSSDKKI--PYKWTAPEAA--SHGTFS----TKSDVWSFGIL 193
Query: 281 AYEIFGHDNPFYQSARNTDYEVNALPQLNTN--------VPEVMRRLVAKLLENDPSDRP 332
YE+F + Y N + Q+ P+ + +++ + +P DRP
Sbjct: 194 LYEMFTYGQVPYPGMNNHE----VYDQITAGYRMPCPAKCPQEIYKIMLECWAAEPEDRP 249
Query: 333 S 333
S
Sbjct: 250 S 250
Score = 32.8 bits (75), Expect = 1.3
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 23/121 (19%)
Query: 662 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTV 721
+ DFG + K + Y S+D ++ APE A + G FS +KSD W+ G +
Sbjct: 145 VADFGLARLIKEDV---YLSSDKKI--PYKWTAPEAA--SHGTFS----TKSDVWSFGIL 193
Query: 722 AYEIFGHDNPFYQSARNTDYEVNALPQLNTN--------VPEVMRRLVAKLLENDPSDRP 773
YE+F + Y N + Q+ P+ + +++ + +P DRP
Sbjct: 194 LYEMFTYGQVPYPGMNNHE----VYDQITAGYRMPCPAKCPQEIYKIMLECWAAEPEDRP 249
Query: 774 S 774
S
Sbjct: 250 S 250
>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine
Kinase, Yank1. Serine/Threonine Kinases (STKs), Yank1 or
STK32A subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Yank1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily contains uncharacterized STKs
with similarity to the human protein designated Yank1 or
STK32A.
Length = 258
Score = 59.3 bits (144), Expect = 4e-09
Identities = 60/262 (22%), Positives = 98/262 (37%), Gaps = 61/262 (23%)
Query: 850 ALQYIQRNEDMLMNSVENLP---------PHPNVVVMHFAFTDFVPSIPDSSLIYPSALP 900
A++Y+ + + + SV N+ HP +V + ++F D
Sbjct: 29 AMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQD----------------- 71
Query: 901 ARLNPTGGYGRNMSLFI-LMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMH 959
NM L + L+ DLR +L + + S + +++ + +L+
Sbjct: 72 ---------EENMYLVVDLL--LGGDLRYHL-SQKVKFSEEQVKFWICEIVLALEYLHSK 119
Query: 960 RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAP 1019
HRD+K DNILLD E ITDF + T + ++ S++ G MAP
Sbjct: 120 GIIHRDIKPDNILLD--EQGHVH---ITDFNIA-TKVTPDTLTTSTS-----GTPGYMAP 168
Query: 1020 EVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNV-- 1077
EV L D W+ G AYE P+ +R ++ A + +
Sbjct: 169 EV------LCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRAKQETADVLYP 222
Query: 1078 ---PEVMRRLVAKLLENDPSDR 1096
+ KLLE DP R
Sbjct: 223 ATWSTEAIDAINKLLERDPQKR 244
Score = 54.6 bits (132), Expect = 1e-07
Identities = 57/250 (22%), Positives = 95/250 (38%), Gaps = 58/250 (23%)
Query: 1361 LKAMSKELLPLRKPLR--LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPS 1418
+K M+K+ + +R LNE ++ + HP +V + ++F D
Sbjct: 30 MKYMNKQKCVEKGSVRNVLNERRILQELN----HPFLVNLWYSFQD-------------- 71
Query: 1419 ALPARLNPTGGYGRNMSLFI-LMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHL 1477
NM L + L+ DLR +L + + S + +++ + +L
Sbjct: 72 ------------EENMYLVVDLL--LGGDLRYHL-SQKVKFSEEQVKFWICEIVLALEYL 116
Query: 1478 NMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL 1537
+ HRD+K DNILLD E ITDF + T + ++ S++ G
Sbjct: 117 HSKGIIHRDIKPDNILLD--EQGHVH---ITDFNIA-TKVTPDTLTTSTS-----GTPGY 165
Query: 1538 MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYWHRKWLWQHLV 1597
MAPEV L D W+ G AYE P+ +R R + +
Sbjct: 166 MAPEV------LCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTI----RDQI-RAKQ 214
Query: 1598 YSHSSTTPST 1607
+ P+T
Sbjct: 215 ETADVLYPAT 224
Score = 40.4 bits (95), Expect = 0.006
Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 17/116 (14%)
Query: 221 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTV 280
ITDF + T + ++ S++ G MAPEV L D W+ G
Sbjct: 141 ITDFNIA-TKVTPDTLTTSTS-----GTPGYMAPEV------LCRQGYSVAVDWWSLGVT 188
Query: 281 AYEIFGHDNPFYQSARNTDYEVNALPQLNTNV-----PEVMRRLVAKLLENDPSDR 331
AYE P+ +R ++ A + + + KLLE DP R
Sbjct: 189 AYECLRGKRPYRGHSRTIRDQIRAKQETADVLYPATWSTEAIDAINKLLERDPQKR 244
Score = 40.4 bits (95), Expect = 0.006
Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 17/116 (14%)
Query: 662 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTV 721
ITDF + T + ++ S++ G MAPEV L D W+ G
Sbjct: 141 ITDFNIA-TKVTPDTLTTSTS-----GTPGYMAPEV------LCRQGYSVAVDWWSLGVT 188
Query: 722 AYEIFGHDNPFYQSARNTDYEVNALPQLNTNV-----PEVMRRLVAKLLENDPSDR 772
AYE P+ +R ++ A + + + KLLE DP R
Sbjct: 189 AYECLRGKRPYRGHSRTIRDQIRAKQETADVLYPATWSTEAIDAINKLLERDPQKR 244
>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein
Serine/Threonine Kinases, Never In Mitosis gene A-related
kinase 6 and 7. Serine/Threonine Kinases (STKs), Never
In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Nek6/7 subfamily is part of a family of 11 different Neks
(Nek1-11) that are involved in cell cycle control. The
Nek family is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Nek6 and Nek7 are the shortest Neks, consisting
only of the catalytic domain and a very short N-terminal
extension. They show distinct expression patterns and
both appear to be downstream substrates of Nek9. They are
required for mitotic spindle formation and cytokinesis.
They may also be regulators of the p70 ribosomal S6
kinase.
Length = 267
Score = 59.0 bits (143), Expect = 5e-09
Identities = 44/167 (26%), Positives = 61/167 (36%), Gaps = 32/167 (19%)
Query: 945 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 1004
F QL + H++ R HRD+K N+ IT G GL +S
Sbjct: 111 YFVQLCSALEHMHSKRIMHRDIKPANVF-------------ITATGVVKLGDLGLGRFFS 157
Query: 1005 SADIE---LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR 1061
S L G M+PE F KSD W+ G + YE+ +PFY
Sbjct: 158 SKTTAAHSLVGTPYYMSPERIHENGYNF------KSDIWSLGCLLYEMAALQSPFYGDKM 211
Query: 1062 N--------TDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 1100
N + LP + E +R LV++ + DP RP
Sbjct: 212 NLYSLCKKIEKCDYPPLP--ADHYSEELRDLVSRCINPDPEKRPDIS 256
Score = 55.5 bits (134), Expect = 7e-08
Identities = 68/277 (24%), Positives = 96/277 (34%), Gaps = 74/277 (26%)
Query: 1316 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALK--MMFNYSAASNSHAILKAMSKELLPL 1371
+ + +I K I KG +VVY+A G ALK +F A LK + L
Sbjct: 1 LGNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEID-----L 55
Query: 1372 RKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYG 1431
K L HPNV+ +F I ++ L + L G
Sbjct: 56 LKQLD---------------HPNVIKYLASF------IENNELN----IVLELADAGDLS 90
Query: 1432 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERIL--LFTQLLEGVTHLNMHRTAHRDLKS 1489
R ++K + R + ER + F QL + H++ R HRD+K
Sbjct: 91 R------MIKHFKKQKR----------LIPERTIWKYFVQLCSALEHMHSKRIMHRDIKP 134
Query: 1490 DNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIE---LGGNVALMAPEVALAT 1546
N+ IT G GL +SS L G M+PE
Sbjct: 135 ANVF-------------ITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHEN 181
Query: 1547 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARN 1583
F KSD W+ G + YE+ +PFY N
Sbjct: 182 GYNF------KSDIWSLGCLLYEMAALQSPFYGDKMN 212
Score = 39.7 bits (93), Expect = 0.008
Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 19/114 (16%)
Query: 233 GLSMQYSSADIE---LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDN 289
GL +SS L G M+PE F KSD W+ G + YE+ +
Sbjct: 151 GLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNF------KSDIWSLGCLLYEMAALQS 204
Query: 290 PFYQSARN--------TDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 335
PFY N + LP + E +R LV++ + DP RP
Sbjct: 205 PFYGDKMNLYSLCKKIEKCDYPPLP--ADHYSEELRDLVSRCINPDPEKRPDIS 256
Score = 39.7 bits (93), Expect = 0.008
Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 19/114 (16%)
Query: 674 GLSMQYSSADIE---LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDN 730
GL +SS L G M+PE F KSD W+ G + YE+ +
Sbjct: 151 GLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNF------KSDIWSLGCLLYEMAALQS 204
Query: 731 PFYQSARN--------TDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 776
PFY N + LP + E +R LV++ + DP RP
Sbjct: 205 PFYGDKMNLYSLCKKIEKCDYPPLP--ADHYSEELRDLVSRCINPDPEKRPDIS 256
>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant
dual-specificity MAP kinase kinases and similar proteins.
Protein kinases (PKs), MAP kinase kinase (MAPKK)
subfamily, Plant MAPKKs and similar proteins, catalytic
(c) domain. PKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine or
tyrosine residues on protein substrates. The MAPKK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein serine/threonine
kinases, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The mitogen-activated protein
(MAP) kinase signaling pathways are important mediators
of cellular responses to extracellular signals. The
pathways involve a triple kinase core cascade comprising
of the MAP kinase (MAPK), which is phosphorylated and
activated by a MAPK kinase (MAPKK or MKK), which itself
is phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). Members of this group include MAPKKs
from plants, kinetoplastids, alveolates, and mycetozoa.
The MAPKK, LmxPK4, from Leishmania mexicana, is important
in differentiation and virulence. Dictyostelium
discoideum MEK1 is required for proper chemotaxis. MEK1
null mutants display severe defects in cell polarization
and directional movement. Plants contain multiple MAPKKs
like other eukaryotes. The Arabidopsis genome encodes for
10 MAPKKs while poplar and rice contain 13 MAPKKs each.
The functions of these proteins have not been fully
elucidated. There is evidence to suggest that MAPK
cascades are involved in plant stress responses. In
Arabidopsis, MKK3 plays a role in pathogen signaling,
MKK2 is involved in cold and salt stress signaling,
MKK4/MKK5 participates in innate immunity, and MKK7
regulates basal and systemic acquired resistance.
Length = 264
Score = 58.8 bits (143), Expect = 6e-09
Identities = 77/354 (21%), Positives = 118/354 (33%), Gaps = 110/354 (31%)
Query: 1317 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 1374
D++ K + +G++ VVY+ + G YALK K + +EL K
Sbjct: 1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALK----KIHVDGDEEFRKQLLREL----KT 52
Query: 1375 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNM 1434
LR E P VV + AF I + G
Sbjct: 53 LRSCE------------SPYVVKCYGAF-------YKEGEIS---IVLEYMDGG------ 84
Query: 1435 SLFILMKKYNTDLRNYLRERCAQLSMHERIL--LFTQLLEGVTHL-NMHRTAHRDLKSDN 1491
SL L+KK + E +L + Q+L+G+ +L HRD+K N
Sbjct: 85 SLADLLKKVGK--------------IPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSN 130
Query: 1492 ILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS 1551
+L+ N+ ++ I DFG S ++ L + G V M+PE
Sbjct: 131 LLI-----NSKGEVKIADFGISKVLENTLDQCNTFV-----GTVTYMSPE-------RIQ 173
Query: 1552 FVNYS-KSDAWTAGTVAYE-IFGHDNPFYQSARNTDYWHRKWLWQHLVYSHSSTTPSTVA 1609
+YS +D W+ G E G PF ++ L Q + + P+
Sbjct: 174 GESYSYAADIWSLGLTLLECALGK-FPF-LPPGQPSFFE---LMQAICDGPPPSLPAEEF 228
Query: 1610 YEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 1663
S PE R ++ L+ DP RPSA
Sbjct: 229 ------------S------------------PE-FRDFISACLQKDPKKRPSAA 251
Score = 57.2 bits (139), Expect = 2e-08
Identities = 41/173 (23%), Positives = 65/173 (37%), Gaps = 32/173 (18%)
Query: 941 ERIL--LFTQLLEGVTHL-NMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKS 997
E +L + Q+L+G+ +L HRD+K N+L+ N+ ++ I DFG S ++
Sbjct: 98 EPVLAYIARQILKGLDYLHTKRHIIHRDIKPSNLLI-----NSKGEVKIADFGISKVLEN 152
Query: 998 GLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYE-IFGHDNP 1055
L + G V M+PE +YS +D W+ G E G P
Sbjct: 153 TLDQCNTFV-----GTVTYMSPE-------RIQGESYSYAADIWSLGLTLLECALGK-FP 199
Query: 1056 FYQSARNTDY--------EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 1100
F + + R ++ L+ DP RPSA
Sbjct: 200 F-LPPGQPSFFELMQAICDGPPPSLPAEEFSPEFRDFISACLQKDPKKRPSAA 251
Score = 36.4 bits (85), Expect = 0.11
Identities = 28/125 (22%), Positives = 40/125 (32%), Gaps = 24/125 (19%)
Query: 221 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGT 279
I DFG S ++ L + G V M+PE +YS +D W+ G
Sbjct: 141 IADFGISKVLENTLDQCNTFV-----GTVTYMSPE-------RIQGESYSYAADIWSLGL 188
Query: 280 VAYE-IFGHDNPFYQSARNTDY--------EVNALPQLNTNVPEVMRRLVAKLLENDPSD 330
E G PF + + R ++ L+ DP
Sbjct: 189 TLLECALGK-FPF-LPPGQPSFFELMQAICDGPPPSLPAEEFSPEFRDFISACLQKDPKK 246
Query: 331 RPSAE 335
RPSA
Sbjct: 247 RPSAA 251
Score = 36.4 bits (85), Expect = 0.11
Identities = 28/125 (22%), Positives = 40/125 (32%), Gaps = 24/125 (19%)
Query: 662 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGT 720
I DFG S ++ L + G V M+PE +YS +D W+ G
Sbjct: 141 IADFGISKVLENTLDQCNTFV-----GTVTYMSPE-------RIQGESYSYAADIWSLGL 188
Query: 721 VAYE-IFGHDNPFYQSARNTDY--------EVNALPQLNTNVPEVMRRLVAKLLENDPSD 771
E G PF + + R ++ L+ DP
Sbjct: 189 TLLECALGK-FPF-LPPGQPSFFELMQAICDGPPPSLPAEEFSPEFRDFISACLQKDPKK 246
Query: 772 RPSAE 776
RPSA
Sbjct: 247 RPSAA 251
Score = 32.9 bits (76), Expect = 1.3
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 22/88 (25%)
Query: 111 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 168
D++ K + +G++ VVY+ + G YALK K + +EL K
Sbjct: 1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALK----KIHVDGDEEFRKQLLREL----KT 52
Query: 169 LRLNEDMLMNSVENLPPHPNVVVMHFAF 196
LR E P VV + AF
Sbjct: 53 LRSCE------------SPYVVKCYGAF 68
Score = 32.9 bits (76), Expect = 1.3
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 22/88 (25%)
Query: 552 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 609
D++ K + +G++ VVY+ + G YALK K + +EL K
Sbjct: 1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALK----KIHVDGDEEFRKQLLREL----KT 52
Query: 610 LRLNEDMLMNSVENLPPHPNVVVMHFAF 637
LR E P VV + AF
Sbjct: 53 LRSCE------------SPYVVKCYGAF 68
>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase
(PTK) family; Janus kinase (Jak) subfamily; catalytic (c)
domain (repeat 2). The Jak subfamily is composed of Jak1,
Jak2, Jak3, TYK2, and similar proteins. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Jak
subfamily proteins are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal FERM domain, followed by
a Src homology 2 (SH2) domain, a pseudokinase domain, and
a C-terminal tyr kinase catalytic domain. Most Jaks are
expressed in a wide variety of tissues, except for Jak3,
which is expressed only in hematopoietic cells. Jaks are
crucial for cytokine receptor signaling. They are
activated by autophosphorylation upon cytokine-induced
receptor aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs). Jaks
are also involved in regulating the surface expression of
some cytokine receptors. The Jak-STAT pathway is involved
in many biological processes including hematopoiesis,
immunoregulation, host defense, fertility, lactation,
growth, and embryogenesis.
Length = 284
Score = 58.6 bits (142), Expect = 7e-09
Identities = 55/192 (28%), Positives = 85/192 (44%), Gaps = 33/192 (17%)
Query: 926 LRNYLRERCAQLSMHERILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 984
LR+YL+ Q++ +R+LLF+ Q+ +G+ +L R HRDL + NIL++ SED +
Sbjct: 95 LRDYLQRHRDQIN-LKRLLLFSSQICKGMDYLGSQRYIHRDLAARNILVE-SEDL----V 148
Query: 985 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGT 1044
I+DFG + Y E + APE L T F S SD W+ G
Sbjct: 149 KISDFGLAKVLPEDKDYYYVKEPGES--PIFWYAPE-CLRT---SKF--SSASDVWSFGV 200
Query: 1045 VAYEIFGHDNPFY----QSARNTDYE---------VNAL---PQLN--TNVPEVMRRLVA 1086
YE+F + +P + R + L +L + P+ + L+
Sbjct: 201 TLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGERLPRPPSCPDEVYDLMK 260
Query: 1087 KLLENDPSDRPS 1098
E +P DRPS
Sbjct: 261 LCWEAEPQDRPS 272
Score = 57.4 bits (139), Expect = 2e-08
Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 15/133 (11%)
Query: 1447 LRNYLRERCAQLSMHERILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 1505
LR+YL+ Q++ +R+LLF+ Q+ +G+ +L R HRDL + NIL++ SED +
Sbjct: 95 LRDYLQRHRDQIN-LKRLLLFSSQICKGMDYLGSQRYIHRDLAARNILVE-SEDL----V 148
Query: 1506 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGT 1565
I+DFG + Y E + APE L T F S SD W+ G
Sbjct: 149 KISDFGLAKVLPEDKDYYYVKEPGES--PIFWYAPE-CLRT---SKF--SSASDVWSFGV 200
Query: 1566 VAYEIFGHDNPFY 1578
YE+F + +P
Sbjct: 201 TLYELFTYGDPSQ 213
Score = 30.4 bits (69), Expect = 7.6
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 18/83 (21%)
Query: 269 YSKSDAWTAGTVAYEIFGHDNPFY----QSARNTDYE---------VNAL---PQLN--T 310
S SD W+ G YE+F + +P + R + L +L
Sbjct: 190 SSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGERLPRPP 249
Query: 311 NVPEVMRRLVAKLLENDPSDRPS 333
+ P+ + L+ E +P DRPS
Sbjct: 250 SCPDEVYDLMKLCWEAEPQDRPS 272
Score = 30.4 bits (69), Expect = 7.6
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 18/83 (21%)
Query: 710 YSKSDAWTAGTVAYEIFGHDNPFY----QSARNTDYE---------VNAL---PQLN--T 751
S SD W+ G YE+F + +P + R + L +L
Sbjct: 190 SSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGERLPRPP 249
Query: 752 NVPEVMRRLVAKLLENDPSDRPS 774
+ P+ + L+ E +P DRPS
Sbjct: 250 SCPDEVYDLMKLCWEAEPQDRPS 272
>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine
Kinases. Serine/Threonine Kinases (STKs), CMGC family,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CMGC family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The CMGC family
consists of Cyclin-Dependent protein Kinases (CDKs),
Mitogen-activated protein kinases (MAPKs) such as
Extracellular signal-regulated kinase (ERKs), c-Jun
N-terminal kinases (JNKs), and p38, and similar proteins.
CDKs belong to a large subfamily of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. MAPKs serve as
important mediators of cellular responses to
extracellular signals. They control critical cellular
functions including differentiation, proliferation,
migration, and apoptosis. They are also implicated in the
pathogenesis of many diseases including multiple types of
cancer, stroke, diabetes, and chronic inflammation.
Length = 283
Score = 58.5 bits (142), Expect = 9e-09
Identities = 76/364 (20%), Positives = 117/364 (32%), Gaps = 112/364 (30%)
Query: 1323 KFIAKGTNAVVYEATFR--GVEYALKMM--FNYSAASNSHAILKAMSKELLPLRKPLRLN 1378
I +GT VVY+A + G A+K + S A+ +E+ L+ LN
Sbjct: 5 GKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTAL-----REIKLLK---ELN 56
Query: 1379 EDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSL-F 1437
HPN++ + F ++ L F
Sbjct: 57 -------------HPNIIKLLDVFRH--------------------------KGDLYLVF 77
Query: 1438 ILMKKYNTDLRNYLRERCAQLSMHERILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDC 1496
M TDL +++R L I + QLL+G+ + H HRDLK +N+L++
Sbjct: 78 EFMD---TDLYKLIKDRQRGLP-ESLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINT 133
Query: 1497 SEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL----ATPGLFSF 1552
L + DFG + + G V V A L
Sbjct: 134 EG-----VLKLADFGLARS---------------FGSPVRPYTHYVVTRWYRAPELLLGD 173
Query: 1553 VNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYWHRKWLWQHLVYSHSSTTPSTVAYE 1611
YS D W+ G + E+ P + D + +
Sbjct: 174 KGYSTPVDIWSVGCIFAELLSR-RPLFPGKSEIDQLFK-------------------IFR 213
Query: 1612 IFGHDNP-----FYQSARNT-----DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS 1661
G +P F ARN LP+L N L++++L DP R +
Sbjct: 214 TLGTPDPEVWPKFTSLARNYKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRIT 273
Query: 1662 AELA 1665
AE A
Sbjct: 274 AEQA 277
Score = 54.3 bits (131), Expect = 2e-07
Identities = 52/232 (22%), Positives = 81/232 (34%), Gaps = 59/232 (25%)
Query: 909 YGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERILLFT-QLLEGVTHLNMHRTAHRDLK 967
+ L+++ + +TDL +++R L I + QLL+G+ + H HRDLK
Sbjct: 67 FRHKGDLYLVFEFMDTDLYKLIKDRQRGLP-ESLIKSYLYQLLQGLAFCHSHGILHRDLK 125
Query: 968 SDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL---- 1023
+N+L++ L + DFG + + G V V
Sbjct: 126 PENLLINTEG-----VLKLADFGLARS---------------FGSPVRPYTHYVVTRWYR 165
Query: 1024 ATPGLFSFVNYSKS-DAWTAGTVAYE----------------------IFGHDNP----- 1055
A L YS D W+ G + E G +P
Sbjct: 166 APELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPK 225
Query: 1056 FYQSARNT-----DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 1102
F ARN LP+L N L++++L DP R +AE A
Sbjct: 226 FTSLARNYKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQA 277
>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine
Kinase, Never In Mitosis gene A-related kinase 11.
Serine/Threonine Kinases (STKs), Never In Mitosis gene A
(NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek11 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part of
a larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek11 is involved,
through direct phosphorylation, in regulating the
degradation of Cdc25A (Cell Division Cycle 25 homolog A),
which plays a role in cell cycle progression and in
activating cyclin dependent kinases. Nek11 is activated
by CHK1 (CHeckpoint Kinase 1) and may be involved in the
G2/M checkpoint. Nek11 may also play a role in the
S-phase checkpoint as well as in DNA replication and
genotoxic stress responses.
Length = 260
Score = 57.6 bits (139), Expect = 1e-08
Identities = 52/160 (32%), Positives = 69/160 (43%), Gaps = 26/160 (16%)
Query: 946 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 1005
F QLL GV +++ R HRDLK+ NI L ++N L I DFG S L M
Sbjct: 112 FIQLLLGVHYMHQRRILHRDLKAKNIFL---KNNL---LKIGDFGVSR-----LLMGSCD 160
Query: 1006 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI------FGHDNPFYQS 1059
G M+PE AL G SKSD W+ G + YE+ F N
Sbjct: 161 LATTFTGTPYYMSPE-ALKHQGY-----DSKSDIWSLGCILYEMCCLAHAFEGQNFLSVV 214
Query: 1060 ARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA 1099
R + +LP+ + ++ +L DPS RPSA
Sbjct: 215 LRIVEGPTPSLPE---TYSRQLNSIMQSMLNKDPSLRPSA 251
Score = 48.4 bits (115), Expect = 1e-05
Identities = 39/104 (37%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 1467 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 1526
F QLL GV +++ R HRDLK+ NI L ++N L I DFG S L M
Sbjct: 112 FIQLLLGVHYMHQRRILHRDLKAKNIFL---KNNL---LKIGDFGVSR-----LLMGSCD 160
Query: 1527 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 1570
G M+PE AL G SKSD W+ G + YE+
Sbjct: 161 LATTFTGTPYYMSPE-ALKHQGY-----DSKSDIWSLGCILYEM 198
Score = 34.1 bits (78), Expect = 0.44
Identities = 39/132 (29%), Positives = 52/132 (39%), Gaps = 23/132 (17%)
Query: 209 IYPKDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 268
I+ K+N L I DFG S L M G M+PE AL G
Sbjct: 137 IFLKNNL---LKIGDFGVSR-----LLMGSCDLATTFTGTPYYMSPE-ALKHQGY----- 182
Query: 269 YSKSDAWTAGTVAYEI------FGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAK 322
SKSD W+ G + YE+ F N R + +LP+ + ++
Sbjct: 183 DSKSDIWSLGCILYEMCCLAHAFEGQNFLSVVLRIVEGPTPSLPE---TYSRQLNSIMQS 239
Query: 323 LLENDPSDRPSA 334
+L DPS RPSA
Sbjct: 240 MLNKDPSLRPSA 251
Score = 34.1 bits (78), Expect = 0.44
Identities = 39/132 (29%), Positives = 52/132 (39%), Gaps = 23/132 (17%)
Query: 650 IYPKDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 709
I+ K+N L I DFG S L M G M+PE AL G
Sbjct: 137 IFLKNNL---LKIGDFGVSR-----LLMGSCDLATTFTGTPYYMSPE-ALKHQGY----- 182
Query: 710 YSKSDAWTAGTVAYEI------FGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAK 763
SKSD W+ G + YE+ F N R + +LP+ + ++
Sbjct: 183 DSKSDIWSLGCILYEMCCLAHAFEGQNFLSVVLRIVEGPTPSLPE---TYSRQLNSIMQS 239
Query: 764 LLENDPSDRPSA 775
+L DPS RPSA
Sbjct: 240 MLNKDPSLRPSA 251
>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine
Kinase, Never In Mitosis gene A-related kinase 9.
Serine/Threonine Kinases (STKs), Never In Mitosis gene A
(NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek9 subfamily is one
of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part of
a larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek9, also called
Nercc1, is primarily a cytoplasmic protein but can also
localize in the nucleus. It is involved in modulating
chromosome alignment and splitting during mitosis. It
interacts with the gamma-tubulin ring complex and the Ran
GTPase, and is implicated in microtubule organization.
Nek9 associates with FACT (FAcilitates Chromatin
Transcription) and modulates interphase progression. It
also interacts with Nek6, and Nek7, during mitosis,
resulting in their activation.
Length = 256
Score = 57.5 bits (139), Expect = 1e-08
Identities = 61/198 (30%), Positives = 89/198 (44%), Gaps = 29/198 (14%)
Query: 912 NMSLFILMKKYNT-DLRNYLRERCAQLSMHERIL-LFTQLLEGVTHLNMHRTAHRDLKSD 969
+ +L I M+ N L + + + QL E +L Q++ V++++ HRD+K+
Sbjct: 71 DNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAGILHRDIKTL 130
Query: 970 NILLDCSEDNTCPQLV-ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL 1028
NI L T L+ + DFG S L +YS A+ +G M+PE L
Sbjct: 131 NIFL------TKAGLIKLGDFGISKI----LGSEYSMAETVVG-TPYYMSPE-------L 172
Query: 1029 FSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLN-TNVPEV----MR 1082
V Y+ KSD W G V YE+ F A N V + Q N T V V +
Sbjct: 173 CQGVKYNFKSDIWALGCVLYELLTLKRTF--DATNPLNLVVKIVQGNYTPVVSVYSSELI 230
Query: 1083 RLVAKLLENDPSDRPSAE 1100
LV LL+ DP RP+A+
Sbjct: 231 SLVHSLLQQDPEKRPTAD 248
Score = 42.4 bits (100), Expect = 0.001
Identities = 46/154 (29%), Positives = 69/154 (44%), Gaps = 28/154 (18%)
Query: 1433 NMSLFILMKKYNT-DLRNYLRERCAQLSMHERIL-LFTQLLEGVTHLNMHRTAHRDLKSD 1490
+ +L I M+ N L + + + QL E +L Q++ V++++ HRD+K+
Sbjct: 71 DNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAGILHRDIKTL 130
Query: 1491 NILLDCSEDNTCPQLV-ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL 1549
NI L T L+ + DFG S L +YS A+ + G M+PE L
Sbjct: 131 NIFL------TKAGLIKLGDFGISKI----LGSEYSMAETVV-GTPYYMSPE-------L 172
Query: 1550 FSFVNYS-KSDAWTAGTVAYEI------FGHDNP 1576
V Y+ KSD W G V YE+ F NP
Sbjct: 173 CQGVKYNFKSDIWALGCVLYELLTLKRTFDATNP 206
Score = 40.1 bits (94), Expect = 0.007
Identities = 41/121 (33%), Positives = 53/121 (43%), Gaps = 20/121 (16%)
Query: 221 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGT 279
+ DFG S L +YS A+ +G M+PE L V Y+ KSD W G
Sbjct: 142 LGDFGISKI----LGSEYSMAETVVG-TPYYMSPE-------LCQGVKYNFKSDIWALGC 189
Query: 280 VAYEIFGHDNPFYQSARNTDYEVNALPQLN-TNVPEV----MRRLVAKLLENDPSDRPSA 334
V YE+ F A N V + Q N T V V + LV LL+ DP RP+A
Sbjct: 190 VLYELLTLKRTF--DATNPLNLVVKIVQGNYTPVVSVYSSELISLVHSLLQQDPEKRPTA 247
Query: 335 E 335
+
Sbjct: 248 D 248
Score = 40.1 bits (94), Expect = 0.007
Identities = 41/121 (33%), Positives = 53/121 (43%), Gaps = 20/121 (16%)
Query: 662 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGT 720
+ DFG S L +YS A+ +G M+PE L V Y+ KSD W G
Sbjct: 142 LGDFGISKI----LGSEYSMAETVVG-TPYYMSPE-------LCQGVKYNFKSDIWALGC 189
Query: 721 VAYEIFGHDNPFYQSARNTDYEVNALPQLN-TNVPEV----MRRLVAKLLENDPSDRPSA 775
V YE+ F A N V + Q N T V V + LV LL+ DP RP+A
Sbjct: 190 VLYELLTLKRTF--DATNPLNLVVKIVQGNYTPVVSVYSSELISLVHSLLQQDPEKRPTA 247
Query: 776 E 776
+
Sbjct: 248 D 248
>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine
Kinases, Anaplastic Lymphoma Kinase and Leukocyte
Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family;
Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine
(tyr) Kinase (LTK); catalytic (c) domain. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to tyr
residues in protein substrates. ALK and LTK are orphan
receptor tyr kinases (RTKs) whose ligands are not yet
well-defined. RTKs contain an extracellular
ligand-binding domain, a transmembrane region, and an
intracellular tyr kinase domain. They are usually
activated through ligand binding, which causes
dimerization and autophosphorylation of the intracellular
tyr kinase catalytic domain. ALK appears to play an
important role in mammalian neural development as well as
visceral muscle differentiation in Drosophila. ALK is
aberrantly expressed as fusion proteins, due to
chromosomal translocations, in about 60% of anaplastic
large cell lymphomas (ALCLs). ALK fusion proteins are
also found in rare cases of diffuse large B cell
lymphomas (DLBCLs). LTK is mainly expressed in B
lymphocytes and neuronal tissues. It is important in cell
proliferation and survival. Transgenic mice expressing
TLK display retarded growth and high mortality rate. In
addition, a polymorphism in mouse and human LTK is
implicated in the pathogenesis of systemic lupus
erythematosus.
Length = 277
Score = 57.4 bits (139), Expect = 1e-08
Identities = 52/195 (26%), Positives = 80/195 (41%), Gaps = 43/195 (22%)
Query: 925 DLRNYLRE------RCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSED 978
DL+++LRE R + L+M + + + +G +L + HRD+ + N LL C
Sbjct: 95 DLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTC--- 151
Query: 979 NTCPQLV--ITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 1029
P V I DFG +SY K G +M + M PE L G+F
Sbjct: 152 -KGPGRVAKIADFGMARDIYRASYYRKGGRAML----------PIKWMPPEAFL--DGIF 198
Query: 1030 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLN------TNVPEVMRR 1083
+ SK+D W+ G + +EIF Y N EV P + R
Sbjct: 199 T----SKTDVWSFGVLLWEIFSLGYMPYPGRTNQ--EVMEFVTGGGRLDPPKGCPGPVYR 252
Query: 1084 LVAKLLENDPSDRPS 1098
++ ++ P DRP+
Sbjct: 253 IMTDCWQHTPEDRPN 267
Score = 54.8 bits (132), Expect = 1e-07
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 35/155 (22%)
Query: 1446 DLRNYLRE------RCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSED 1499
DL+++LRE R + L+M + + + +G +L + HRD+ + N LL C
Sbjct: 95 DLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTC--- 151
Query: 1500 NTCPQLV--ITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 1550
P V I DFG +SY K G +M + M PE L G+F
Sbjct: 152 -KGPGRVAKIADFGMARDIYRASYYRKGGRAML----------PIKWMPPEAFL--DGIF 198
Query: 1551 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD 1585
+ SK+D W+ G + +EIF Y N +
Sbjct: 199 T----SKTDVWSFGVLLWEIFSLGYMPYPGRTNQE 229
Score = 34.3 bits (79), Expect = 0.50
Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 31/126 (24%)
Query: 221 ITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSD 273
I DFG +SY K G +M + M PE L G+F+ SK+D
Sbjct: 160 IADFGMARDIYRASYYRKGGRAML----------PIKWMPPEAFL--DGIFT----SKTD 203
Query: 274 AWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLN------TNVPEVMRRLVAKLLEND 327
W+ G + +EIF Y N EV P + R++ ++
Sbjct: 204 VWSFGVLLWEIFSLGYMPYPGRTNQ--EVMEFVTGGGRLDPPKGCPGPVYRIMTDCWQHT 261
Query: 328 PSDRPS 333
P DRP+
Sbjct: 262 PEDRPN 267
Score = 34.3 bits (79), Expect = 0.50
Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 31/126 (24%)
Query: 662 ITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSD 714
I DFG +SY K G +M + M PE L G+F+ SK+D
Sbjct: 160 IADFGMARDIYRASYYRKGGRAML----------PIKWMPPEAFL--DGIFT----SKTD 203
Query: 715 AWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLN------TNVPEVMRRLVAKLLEND 768
W+ G + +EIF Y N EV P + R++ ++
Sbjct: 204 VWSFGVLLWEIFSLGYMPYPGRTNQ--EVMEFVTGGGRLDPPKGCPGPVYRIMTDCWQHT 261
Query: 769 PSDRPS 774
P DRP+
Sbjct: 262 PEDRPN 267
>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine
Kinases. Protein Tyrosine Kinase (PTK) family; Fes
subfamily; catalytic (c) domain. Fes subfamily members
include Fes (or Fps), Fer, and similar proteins. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fes
subfamily proteins are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal region with FCH
(Fes/Fer/CIP4 homology) and coiled-coil domains, followed
by a SH2 domain, and a C-terminal catalytic domain. The
genes for Fes (feline sarcoma) and Fps (Fujinami poultry
sarcoma) were first isolated from tumor-causing
retroviruses. The viral oncogenes encode chimeric Fes
proteins consisting of Gag sequences at the N-termini,
resulting in unregulated tyr kinase activity. Fes and Fer
kinases play roles in haematopoiesis, inflammation and
immunity, growth factor signaling, cytoskeletal
regulation, cell migration and adhesion, and the
regulation of cell-cell interactions. Fes and Fer show
redundancy in their biological functions.
Length = 251
Score = 56.7 bits (137), Expect = 2e-08
Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 26/182 (14%)
Query: 925 DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 984
L +LR++ +L++ + + + G+ +L HRDL + N L+ E+N L
Sbjct: 78 SLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLAARNCLVG--ENN---VL 132
Query: 985 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGT 1044
I+DFG S + G+ Y+ +D + APE AL G ++ S+SD W+ G
Sbjct: 133 KISDFGMSREEEGGI---YTVSDGLKQIPIKWTAPE-ALNY-GRYT----SESDVWSYGI 183
Query: 1045 VAYEIF-GHDNPF----YQSAR---NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDR 1096
+ +E F D P+ Q R + Y + A PQL PE + RL+ + DP +R
Sbjct: 184 LLWETFSLGDTPYPGMSNQQTRERIESGYRMPA-PQL---CPEEIYRLMLQCWAYDPENR 239
Query: 1097 PS 1098
PS
Sbjct: 240 PS 241
Score = 44.8 bits (106), Expect = 2e-04
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 1446 DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 1505
L +LR++ +L++ + + + G+ +L HRDL + N L+ E+N L
Sbjct: 78 SLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLAARNCLVG--ENN---VL 132
Query: 1506 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGT 1565
I+DFG S + G+ Y+ +D + APE AL G ++ S+SD W+ G
Sbjct: 133 KISDFGMSREEEGGI---YTVSDGLKQIPIKWTAPE-ALNY-GRYT----SESDVWSYGI 183
Query: 1566 VAYEIF-GHDNPF 1577
+ +E F D P+
Sbjct: 184 LLWETFSLGDTPY 196
Score = 41.3 bits (97), Expect = 0.002
Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 21/124 (16%)
Query: 218 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTA 277
L I+DFG S + G+ Y+ +D + APE AL G ++ S+SD W+
Sbjct: 131 VLKISDFGMSREEEGGI---YTVSDGLKQIPIKWTAPE-ALNY-GRYT----SESDVWSY 181
Query: 278 GTVAYEIF-GHDNPF----YQSAR---NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPS 329
G + +E F D P+ Q R + Y + A PQL PE + RL+ + DP
Sbjct: 182 GILLWETFSLGDTPYPGMSNQQTRERIESGYRMPA-PQL---CPEEIYRLMLQCWAYDPE 237
Query: 330 DRPS 333
+RPS
Sbjct: 238 NRPS 241
Score = 41.3 bits (97), Expect = 0.002
Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 21/124 (16%)
Query: 659 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTA 718
L I+DFG S + G+ Y+ +D + APE AL G ++ S+SD W+
Sbjct: 131 VLKISDFGMSREEEGGI---YTVSDGLKQIPIKWTAPE-ALNY-GRYT----SESDVWSY 181
Query: 719 GTVAYEIF-GHDNPF----YQSAR---NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPS 770
G + +E F D P+ Q R + Y + A PQL PE + RL+ + DP
Sbjct: 182 GILLWETFSLGDTPYPGMSNQQTRERIESGYRMPA-PQL---CPEEIYRLMLQCWAYDPE 237
Query: 771 DRPS 774
+RPS
Sbjct: 238 NRPS 241
>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase (MAPKK) subfamily, fungal
Byr1-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling pathways
are important mediators of cellular responses to
extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Byr1 from
Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and
related proteins. Byr1 phosphorylates its downstream
target, the MAPK Spk1, and is regulated by the MAPKKK
Byr2. The Spk1 cascade is pheromone-responsive and is
essential for sporulation and sexual differentiation in
fission yeast. FUZ7 phosphorylates and activates its
target, the MAPK Crk1, which is required in mating and
virulence in U. maydis.
Length = 284
Score = 57.1 bits (138), Expect = 2e-08
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 36/167 (21%)
Query: 949 LLEGVTHL-NMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
++EG+T+L N+HR HRD+K NIL+ N+ Q+ + DFG S + S AD
Sbjct: 112 VVEGLTYLYNVHRIMHRDIKPSNILV-----NSRGQIKLCDFGVSG------ELINSIAD 160
Query: 1008 IELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 1066
+G + M+PE Y+ KSD W+ G E+ PF S + D +
Sbjct: 161 TFVGTST-YMSPERIQGG-------KYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQ 212
Query: 1067 VNAL--------------PQL-NTNVPEVMRRLVAKLLENDPSDRPS 1098
+ + P+L +++ PE +R V L DP++RP+
Sbjct: 213 DDPMGILDLLQQIVQEPPPRLPSSDFPEDLRDFVDACLLKDPTERPT 259
Score = 49.4 bits (118), Expect = 8e-06
Identities = 52/198 (26%), Positives = 77/198 (38%), Gaps = 56/198 (28%)
Query: 1470 LLEGVTHL-NMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
++EG+T+L N+HR HRD+K NIL+ N+ Q+ + DFG S + S AD
Sbjct: 112 VVEGLTYLYNVHRIMHRDIKPSNILV-----NSRGQIKLCDFGVSG------ELINSIAD 160
Query: 1529 IELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYW 1587
+G + M+PE Y+ KSD W+ G E+ PF S + D
Sbjct: 161 TFVGTST-YMSPERIQGG-------KYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQ 212
Query: 1588 HRKW----LWQHLVYSHSSTTPSTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEV 1643
L Q +V PS ++ PE
Sbjct: 213 DDPMGILDLLQQIVQEPPPRLPS-------------------------------SDFPED 241
Query: 1644 MRRLVAKLLENDPSDRPS 1661
+R V L DP++RP+
Sbjct: 242 LRDFVDACLLKDPTERPT 259
Score = 34.0 bits (78), Expect = 0.58
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 30/136 (22%)
Query: 214 NTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KS 272
N+ Q+ + DFG S + S AD +G + M+PE Y+ KS
Sbjct: 138 NSRGQIKLCDFGVSG------ELINSIADTFVGTST-YMSPERIQGG-------KYTVKS 183
Query: 273 DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL--------------PQL-NTNVPEVMR 317
D W+ G E+ PF S + D + + + P+L +++ PE +R
Sbjct: 184 DVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEPPPRLPSSDFPEDLR 243
Query: 318 RLVAKLLENDPSDRPS 333
V L DP++RP+
Sbjct: 244 DFVDACLLKDPTERPT 259
Score = 34.0 bits (78), Expect = 0.58
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 30/136 (22%)
Query: 655 NTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KS 713
N+ Q+ + DFG S + S AD +G + M+PE Y+ KS
Sbjct: 138 NSRGQIKLCDFGVSG------ELINSIADTFVGTST-YMSPERIQGG-------KYTVKS 183
Query: 714 DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL--------------PQL-NTNVPEVMR 758
D W+ G E+ PF S + D + + + P+L +++ PE +R
Sbjct: 184 DVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEPPPRLPSSDFPEDLR 243
Query: 759 RLVAKLLENDPSDRPS 774
V L DP++RP+
Sbjct: 244 DFVDACLLKDPTERPT 259
>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase,
Cell Cycle-Related Kinase. Serine/Threonine Kinases
(STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CCRK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CCRK was
previously called p42. It is a Cyclin-Dependent Kinase
(CDK)-Activating Kinase (CAK) which is essential for the
activation of CDK2. It is indispensable for cell growth
and has been implicated in the progression of
glioblastoma multiforme. In the heart, a splice variant
of CCRK with a different C-terminal half is expressed,
this variant promotes cardiac cell growth and survival
and is significantly down-regulated during the
development of heart failure.
Length = 286
Score = 56.9 bits (138), Expect = 2e-08
Identities = 54/225 (24%), Positives = 78/225 (34%), Gaps = 54/225 (24%)
Query: 914 SLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL 973
++M+ +DL LR+ L + LL+GV +++ + HRDLK N+L+
Sbjct: 73 GFVLVMEYMPSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANLLI 132
Query: 974 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA---LMAPEVALATPGLFS 1030
L I DFG + YS VA APE+ L+
Sbjct: 133 SADG-----VLKIADFGLARLFSEEEPRLYSHQ-------VATRWYRAPEL------LYG 174
Query: 1031 FVNYSKS-DAWTAGTVAYE------IFGHDNPFYQSAR----------NTDYEVNALPQL 1073
Y D W G + E +F +N Q A T + +LP
Sbjct: 175 ARKYDPGVDLWAVGCIFAELLNGSPLFPGENDIEQLAIVFRTLGTPNEETWPGLTSLPDY 234
Query: 1074 NT-----NVPEVMRR-----------LVAKLLENDPSDRPSAELA 1102
N + P + L+ LL DPS R SA A
Sbjct: 235 NKITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEA 279
Score = 55.4 bits (134), Expect = 8e-08
Identities = 34/136 (25%), Positives = 51/136 (37%), Gaps = 22/136 (16%)
Query: 1435 SLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL 1494
++M+ +DL LR+ L + LL+GV +++ + HRDLK N+L+
Sbjct: 73 GFVLVMEYMPSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANLLI 132
Query: 1495 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA---LMAPEVALATPGLFS 1551
L I DFG + YS VA APE+ L+
Sbjct: 133 SADG-----VLKIADFGLARLFSEEEPRLYSHQ-------VATRWYRAPEL------LYG 174
Query: 1552 FVNYSKS-DAWTAGTV 1566
Y D W G +
Sbjct: 175 ARKYDPGVDLWAVGCI 190
>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine
Kinase, Apoptosis signal-regulating kinase.
Serine/threonine kinases (STKs), Apoptosis
signal-regulating kinase (ASK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ASK subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Subfamily members
are mitogen-activated protein kinase (MAPK) kinase
kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1,
ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. ASK1 (also called
MAPKKK5) functions in the c-Jun N-terminal kinase (JNK)
and p38 MAPK signaling pathways by directly activating
their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It
plays important roles in cytokine and stress responses,
as well as in reactive oxygen species (ROS)-mediated
cellular responses. ASK1 is implicated in various
diseases mediated by oxidative stress including inschemic
heart disease, hypertension, vessel injury, brain
ischemia, Fanconi anemia, asthma, and pulmonary edema,
among others. ASK2 (also called MAPKKK6) functions only
in a heteromeric complex with ASK1, and can activate ASK1
by direct phosphorylation. The function of MAPKKK15 is
still unknown.
Length = 268
Score = 56.8 bits (137), Expect = 3e-08
Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 22/182 (12%)
Query: 926 LRNYLRERCAQLSMHERILLF--TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQ 983
L LR + L +E+ ++F Q+LEG+ +L+ ++ HRD+K DN+L+ NT
Sbjct: 92 LSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLV-----NTYSG 146
Query: 984 LV-ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTA 1042
+V I+DFG+S +G++ + G + MAPEV P + + +D W+
Sbjct: 147 VVKISDFGTS-KRLAGINPCTET----FTGTLQYMAPEVIDKGPRGYG----APADIWSL 197
Query: 1043 GTVAYEIFGHDNPFY--QSARNTDYEVNAL---PQLNTNVPEVMRRLVAKLLENDPSDRP 1097
G E+ PF + ++V P++ ++ + + + E DP R
Sbjct: 198 GCTIVEMATGKPPFIELGEPQAAMFKVGMFKIHPEIPESLSAEAKNFILRCFEPDPDKRA 257
Query: 1098 SA 1099
SA
Sbjct: 258 SA 259
Score = 47.9 bits (114), Expect = 2e-05
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 17/136 (12%)
Query: 1447 LRNYLRERCAQLSMHERILLF--TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQ 1504
L LR + L +E+ ++F Q+LEG+ +L+ ++ HRD+K DN+L+ NT
Sbjct: 92 LSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLV-----NTYSG 146
Query: 1505 LV-ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTA 1563
+V I+DFG+S +G++ + G + MAPEV P + + +D W+
Sbjct: 147 VVKISDFGTS-KRLAGINPCTET----FTGTLQYMAPEVIDKGPRGYG----APADIWSL 197
Query: 1564 GTVAYEIFGHDNPFYQ 1579
G E+ PF +
Sbjct: 198 GCTIVEMATGKPPFIE 213
Score = 30.2 bits (68), Expect = 9.7
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 14/119 (11%)
Query: 221 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTV 280
I+DFG+S +G++ + G + MAPEV P + + +D W+ G
Sbjct: 150 ISDFGTS-KRLAGINPCTET----FTGTLQYMAPEVIDKGPRGYG----APADIWSLGCT 200
Query: 281 AYEIFGHDNPFY--QSARNTDYEVNAL---PQLNTNVPEVMRRLVAKLLENDPSDRPSA 334
E+ PF + ++V P++ ++ + + + E DP R SA
Sbjct: 201 IVEMATGKPPFIELGEPQAAMFKVGMFKIHPEIPESLSAEAKNFILRCFEPDPDKRASA 259
Score = 30.2 bits (68), Expect = 9.7
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 14/119 (11%)
Query: 662 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTV 721
I+DFG+S +G++ + G + MAPEV P + + +D W+ G
Sbjct: 150 ISDFGTS-KRLAGINPCTET----FTGTLQYMAPEVIDKGPRGYG----APADIWSLGCT 200
Query: 722 AYEIFGHDNPFY--QSARNTDYEVNAL---PQLNTNVPEVMRRLVAKLLENDPSDRPSA 775
E+ PF + ++V P++ ++ + + + E DP R SA
Sbjct: 201 IVEMATGKPPFIELGEPQAAMFKVGMFKIHPEIPESLSAEAKNFILRCFEPDPDKRASA 259
>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional.
Length = 392
Score = 57.5 bits (139), Expect = 3e-08
Identities = 57/224 (25%), Positives = 96/224 (42%), Gaps = 56/224 (25%)
Query: 917 ILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 976
++M KY DL Y+ +R L + + I + +LLE + +L+ HRD+K++NI LD
Sbjct: 163 MVMPKYKCDLFTYV-DRSGPLPLEQAITIQRRLLEALAYLHGRGIIHRDVKTENIFLDEP 221
Query: 977 EDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-S 1035
E+ V+ DFG++ K + G + +PE+ P Y +
Sbjct: 222 EN-----AVLGDFGAAC--KLDAHP-DTPQCYGWSGTLETNSPELLALDP-------YCA 266
Query: 1036 KSDAWTAGTVAYEIFGHDNPFYQSARNTD----------YEVNAL--PQ-LNTN------ 1076
K+D W+AG V +E+ + + + +V+ L PQ +TN
Sbjct: 267 KTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHFK 326
Query: 1077 -----------VPEVMRR---------LVAKLLENDPSDRPSAE 1100
+P V+R+ L+AK+L D RPSA+
Sbjct: 327 QYAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQ 370
Score = 54.1 bits (130), Expect = 4e-07
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 17/142 (11%)
Query: 1438 ILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 1497
++M KY DL Y+ +R L + + I + +LLE + +L+ HRD+K++NI LD
Sbjct: 163 MVMPKYKCDLFTYV-DRSGPLPLEQAITIQRRLLEALAYLHGRGIIHRDVKTENIFLDEP 221
Query: 1498 EDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-S 1556
E+ V+ DFG++ K + G + +PE+ P Y +
Sbjct: 222 EN-----AVLGDFGAAC--KLDAHP-DTPQCYGWSGTLETNSPELLALDP-------YCA 266
Query: 1557 KSDAWTAGTVAYEIFGHDNPFY 1578
K+D W+AG V +E+ + +
Sbjct: 267 KTDIWSAGLVLFEMSVKNVTLF 288
>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine
Kinase, Never In Mitosis gene A-related kinase 5.
Serine/Threonine Kinases (STKs), Never In Mitosis gene A
(NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek5 subfamily is one
of a family of 11 different Neks (Nek1-11). The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. Neks are
involved in the regulation of downstream processes
following the activation of Cdc2, and many of their
functions are cell cycle-related. They play critical
roles in microtubule dynamics during ciliogenesis and
mitosis. The specific function of Nek5 is unknown.
Length = 257
Score = 56.1 bits (135), Expect = 4e-08
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 38/201 (18%)
Query: 912 NMSLFILMKKYNT-DLRNYL-RERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSD 969
N LFI+M+ + DL + R+R S + + F Q+ G+ H++ + HRD+KS
Sbjct: 71 NGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRKILHRDIKSQ 130
Query: 970 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 1029
NI L S++ +L DFG + + + Y+ G ++PE+ P
Sbjct: 131 NIFL--SKNGMVAKL--GDFGIARQLNDSMELAYTCV-----GTPYYLSPEICQNRP--- 178
Query: 1030 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQL------------NTNV 1077
+K+D W+ G V YE+ +PF E N L QL + N
Sbjct: 179 ---YNNKTDIWSLGCVLYELCTLKHPF---------EGNNLHQLVLKICQGYFAPISPNF 226
Query: 1078 PEVMRRLVAKLLENDPSDRPS 1098
+R L+++L + P DRPS
Sbjct: 227 SRDLRSLISQLFKVSPRDRPS 247
Score = 53.4 bits (128), Expect = 3e-07
Identities = 52/227 (22%), Positives = 95/227 (41%), Gaps = 50/227 (22%)
Query: 1354 ASNSHAILKAMSKELLPLR-KPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDS 1412
+ + H ++K + +P++ K E +L+ ++ HPN+V +F +
Sbjct: 23 SDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMK----HPNIVTFFASFQE-------- 70
Query: 1413 SLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYL-RERCAQLSMHERILLFTQL 1470
N LFI+M+ + DL + R+R S + + F Q+
Sbjct: 71 --------------------NGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQI 110
Query: 1471 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIE 1530
G+ H++ + HRD+KS NI L S++ +L DFG + + + Y+
Sbjct: 111 SLGLKHIHDRKILHRDIKSQNIFL--SKNGMVAKL--GDFGIARQLNDSMELAYTCV--- 163
Query: 1531 LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF 1577
G ++PE+ P +K+D W+ G V YE+ +PF
Sbjct: 164 --GTPYYLSPEICQNRP------YNNKTDIWSLGCVLYELCTLKHPF 202
Score = 34.9 bits (80), Expect = 0.29
Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 32/123 (26%)
Query: 223 DFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAY 282
DFG + + + Y+ G ++PE+ P +K+D W+ G V Y
Sbjct: 145 DFGIARQLNDSMELAYTCV-----GTPYYLSPEICQNRP------YNNKTDIWSLGCVLY 193
Query: 283 EIFGHDNPFYQSARNTDYEVNALPQL------------NTNVPEVMRRLVAKLLENDPSD 330
E+ +PF E N L QL + N +R L+++L + P D
Sbjct: 194 ELCTLKHPF---------EGNNLHQLVLKICQGYFAPISPNFSRDLRSLISQLFKVSPRD 244
Query: 331 RPS 333
RPS
Sbjct: 245 RPS 247
Score = 34.9 bits (80), Expect = 0.29
Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 32/123 (26%)
Query: 664 DFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAY 723
DFG + + + Y+ G ++PE+ P +K+D W+ G V Y
Sbjct: 145 DFGIARQLNDSMELAYTCV-----GTPYYLSPEICQNRP------YNNKTDIWSLGCVLY 193
Query: 724 EIFGHDNPFYQSARNTDYEVNALPQL------------NTNVPEVMRRLVAKLLENDPSD 771
E+ +PF E N L QL + N +R L+++L + P D
Sbjct: 194 ELCTLKHPF---------EGNNLHQLVLKICQGYFAPISPNFSRDLRSLISQLFKVSPRD 244
Query: 772 RPS 774
RPS
Sbjct: 245 RPS 247
>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine
Kinase, Serum- and Glucocorticoid-induced Kinase.
Serine/Threonine Kinases (STKs), Serum- and
Glucocorticoid-induced Kinase (SGK) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SGK subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
isoforms of SGK, named SGK1, SGK2, and SGK3 (also called
cytokine-independent survival kinase CISK). SGKs are
activated by insulin and growth factors via
phosphoinositide 3-kinase and PDK1. They activate ion
channels, ion carriers, and the Na-K-ATPase, as well as
regulate the activity of enzymes and transcription
factors. SGKs play important roles in transport, hormone
release, neuroexcitability, cell proliferation, and
apoptosis.
Length = 323
Score = 56.7 bits (137), Expect = 5e-08
Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 20/137 (14%)
Query: 963 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA 1022
+RDLK +NILLD +V+TDFG K G +++S G +APEV
Sbjct: 119 YRDLKPENILLDSQG-----HVVLTDFGLC---KEG--IEHSKTTSTFCGTPEYLAPEVL 168
Query: 1023 LATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPE 1079
P Y ++ D W G V YE+ PFY Y+ +N +L N+
Sbjct: 169 RKQP-------YDRTVDWWCLGAVLYEMLYGLPPFYSRDTAEMYDNILNKPLRLKPNISV 221
Query: 1080 VMRRLVAKLLENDPSDR 1096
R L+ LL+ D + R
Sbjct: 222 SARHLLEGLLQKDRTKR 238
Score = 48.6 bits (116), Expect = 2e-05
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 20/124 (16%)
Query: 1484 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA 1543
+RDLK +NILLD +V+TDFG K G +++S G +APEV
Sbjct: 119 YRDLKPENILLDSQG-----HVVLTDFGLC---KEG--IEHSKTTSTFCGTPEYLAPEVL 168
Query: 1544 LATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYWHRKWLWQHLVYSHSS 1602
P Y ++ D W G V YE+ PFY +R+T + L + L +
Sbjct: 169 RKQP-------YDRTVDWWCLGAVLYEMLYGLPPFY--SRDTAEMYDNILNKPLRLKPNI 219
Query: 1603 TTPS 1606
+ +
Sbjct: 220 SVSA 223
Score = 41.3 bits (97), Expect = 0.003
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 15/116 (12%)
Query: 219 LVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTA 277
+V+TDFG K G +++S G +APEV P Y ++ D W
Sbjct: 135 VVLTDFGLC---KEG--IEHSKTTSTFCGTPEYLAPEVLRKQP-------YDRTVDWWCL 182
Query: 278 GTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDR 331
G V YE+ PFY Y+ +N +L N+ R L+ LL+ D + R
Sbjct: 183 GAVLYEMLYGLPPFYSRDTAEMYDNILNKPLRLKPNISVSARHLLEGLLQKDRTKR 238
Score = 41.3 bits (97), Expect = 0.003
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 15/116 (12%)
Query: 660 LVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTA 718
+V+TDFG K G +++S G +APEV P Y ++ D W
Sbjct: 135 VVLTDFGLC---KEG--IEHSKTTSTFCGTPEYLAPEVLRKQP-------YDRTVDWWCL 182
Query: 719 GTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDR 772
G V YE+ PFY Y+ +N +L N+ R L+ LL+ D + R
Sbjct: 183 GAVLYEMLYGLPPFYSRDTAEMYDNILNKPLRLKPNISVSARHLLEGLLQKDRTKR 238
>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional.
Length = 461
Score = 56.8 bits (137), Expect = 6e-08
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 22/171 (12%)
Query: 893 LIYPSALPA-RLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLE 951
L +P+ L + GG +++ KY +DL YL R L + + + QLL
Sbjct: 217 LSHPAVLALLDVRVVGGL-----TCLVLPKYRSDLYTYLGARLRPLGLAQVTAVARQLLS 271
Query: 952 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG 1011
+ +++ HRD+K++N+L++ ED + + DFG++ + S + +
Sbjct: 272 AIDYIHGEGIIHRDIKTENVLVNGPED-----ICLGDFGAACFARGSWS---TPFHYGIA 323
Query: 1012 GNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSAR 1061
G V APEV P Y+ S D W+AG V +E H + ++R
Sbjct: 324 GTVDTNAPEVLAGDP-------YTPSVDIWSAGLVIFEAAVHTASLFSASR 367
Score = 56.8 bits (137), Expect = 6e-08
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 22/171 (12%)
Query: 1414 LIYPSALPA-RLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLE 1472
L +P+ L + GG +++ KY +DL YL R L + + + QLL
Sbjct: 217 LSHPAVLALLDVRVVGGL-----TCLVLPKYRSDLYTYLGARLRPLGLAQVTAVARQLLS 271
Query: 1473 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG 1532
+ +++ HRD+K++N+L++ ED + + DFG++ + S + +
Sbjct: 272 AIDYIHGEGIIHRDIKTENVLVNGPED-----ICLGDFGAACFARGSWS---TPFHYGIA 323
Query: 1533 GNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSAR 1582
G V APEV P Y+ S D W+AG V +E H + ++R
Sbjct: 324 GTVDTNAPEVLAGDP-------YTPSVDIWSAGLVIFEAAVHTASLFSASR 367
>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled
Receptor Kinase 4-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, GRK4-like group,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The GRK subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. GRKs phosphorylate
and regulate G protein-coupled receptors (GPCRs), the
largest superfamily of cell surface receptors which
regulate some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. Members of the GRK4-like group include
GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group
contain an N-terminal RGS homology (RH) domain and a
catalytic domain, but lack a G protein betagamma-subunit
binding domain. They are localized to the plasma membrane
through post-translational lipid modification or direct
binding to PIP2.
Length = 285
Score = 55.6 bits (134), Expect = 6e-08
Identities = 44/167 (26%), Positives = 65/167 (38%), Gaps = 32/167 (19%)
Query: 941 ERILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGL 999
ER + + ++ G+ L+ R +RDLK +NILLD D+G + GL
Sbjct: 102 ERAVFYAAEITCGLEDLHRERIVYRDLKPENILLD-------------DYGHIRISDLGL 148
Query: 1000 SMQYSSADIELG--GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFY 1057
+++ + G G V MAPEV FS D W G + YE+ +PF
Sbjct: 149 AVEIPEGETIRGRVGTVGYMAPEVVKNERYTFS------PDWWGLGCLIYEMIEGKSPFR 202
Query: 1058 QSARNTDYEVNALPQLNTNVPEV--------MRRLVAKLLENDPSDR 1096
Q E + + E R + +LL DP R
Sbjct: 203 QRKEKVKRE--EVERRVKEDQEEYSEKFSEAARSICRQLLTKDPGFR 247
Score = 51.4 bits (123), Expect = 2e-06
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 22/121 (18%)
Query: 1462 ERILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGL 1520
ER + + ++ G+ L+ R +RDLK +NILLD D+G + GL
Sbjct: 102 ERAVFYAAEITCGLEDLHRERIVYRDLKPENILLD-------------DYGHIRISDLGL 148
Query: 1521 SMQYSSADIELG--GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFY 1578
+++ + G G V MAPEV FS D W G + YE+ +PF
Sbjct: 149 AVEIPEGETIRGRVGTVGYMAPEVVKNERYTFS------PDWWGLGCLIYEMIEGKSPFR 202
Query: 1579 Q 1579
Q
Sbjct: 203 Q 203
Score = 34.4 bits (79), Expect = 0.51
Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 18/123 (14%)
Query: 219 LVITDFGSSYTNKSGLSMQYSSADIELG--GNVALMAPEVALATPGLFSFVNYSKSDAWT 276
+++ D+G + GL+++ + G G V MAPEV FS D W
Sbjct: 133 ILLDDYGHIRISDLGLAVEIPEGETIRGRVGTVGYMAPEVVKNERYTFS------PDWWG 186
Query: 277 AGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEV--------MRRLVAKLLENDP 328
G + YE+ +PF Q E + + E R + +LL DP
Sbjct: 187 LGCLIYEMIEGKSPFRQRKEKVKRE--EVERRVKEDQEEYSEKFSEAARSICRQLLTKDP 244
Query: 329 SDR 331
R
Sbjct: 245 GFR 247
Score = 34.4 bits (79), Expect = 0.51
Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 18/123 (14%)
Query: 660 LVITDFGSSYTNKSGLSMQYSSADIELG--GNVALMAPEVALATPGLFSFVNYSKSDAWT 717
+++ D+G + GL+++ + G G V MAPEV FS D W
Sbjct: 133 ILLDDYGHIRISDLGLAVEIPEGETIRGRVGTVGYMAPEVVKNERYTFS------PDWWG 186
Query: 718 AGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEV--------MRRLVAKLLENDP 769
G + YE+ +PF Q E + + E R + +LL DP
Sbjct: 187 LGCLIYEMIEGKSPFRQRKEKVKRE--EVERRVKEDQEEYSEKFSEAARSICRQLLTKDP 244
Query: 770 SDR 772
R
Sbjct: 245 GFR 247
>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional.
Length = 478
Score = 55.8 bits (134), Expect = 1e-07
Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 34/189 (17%)
Query: 923 NTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 982
N ++ L+E +E LLF Q++ + ++ + HRDLKS NI L P
Sbjct: 153 NKQIKQRLKEHLP-FQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSANIFL-------MP 204
Query: 983 QLVIT--DFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDA 1039
+I DFG S +S+ +S+ G +APE L+ YS K+D
Sbjct: 205 TGIIKLGDFGFSKQYSDSVSLDVASS---FCGTPYYLAPE-------LWERKRYSKKADM 254
Query: 1040 WTAGTVAYEIFGHDNPF--------YQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLEN 1091
W+ G + YE+ PF Q Y+ P V M+ L+ LL
Sbjct: 255 WSLGVILYELLTLHRPFKGPSQREIMQQVLYGKYDPFPCP-----VSSGMKALLDPLLSK 309
Query: 1092 DPSDRPSAE 1100
+P+ RP+ +
Sbjct: 310 NPALRPTTQ 318
Score = 48.9 bits (116), Expect = 2e-05
Identities = 54/223 (24%), Positives = 87/223 (39%), Gaps = 60/223 (26%)
Query: 1444 NTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 1503
N ++ L+E +E LLF Q++ + ++ + HRDLKS NI L P
Sbjct: 153 NKQIKQRLKEHLP-FQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSANIFL-------MP 204
Query: 1504 QLVIT--DFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDA 1560
+I DFG S +S+ +S+ G +APE L+ YS K+D
Sbjct: 205 TGIIKLGDFGFSKQYSDSVSLDVASS---FCGTPYYLAPE-------LWERKRYSKKADM 254
Query: 1561 WTAGTVAYEIFGHDNPFYQSARNTDYWHRKWLWQHLVYSHSSTTPSTVAYEIFGHDNPFY 1620
W+ G + YE+ PF ++ R+ + Q L +G +PF
Sbjct: 255 WSLGVILYELLTLHRPFKGPSQ------REIMQQVL----------------YGKYDPF- 291
Query: 1621 QSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 1663
V M+ L+ LL +P+ RP+ +
Sbjct: 292 ----------------PCPVSSGMKALLDPLLSKNPALRPTTQ 318
Score = 35.8 bits (82), Expect = 0.25
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 26/117 (22%)
Query: 233 GLSMQYS-SADIELG----GNVALMAPEVALATPGLFSFVNYSK-SDAWTAGTVAYEIFG 286
G S QYS S +++ G +APE L+ YSK +D W+ G + YE+
Sbjct: 214 GFSKQYSDSVSLDVASSFCGTPYYLAPE-------LWERKRYSKKADMWSLGVILYELLT 266
Query: 287 HDNPF--------YQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 335
PF Q Y+ P V M+ L+ LL +P+ RP+ +
Sbjct: 267 LHRPFKGPSQREIMQQVLYGKYDPFPCP-----VSSGMKALLDPLLSKNPALRPTTQ 318
Score = 35.8 bits (82), Expect = 0.25
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 26/117 (22%)
Query: 674 GLSMQYS-SADIELG----GNVALMAPEVALATPGLFSFVNYSK-SDAWTAGTVAYEIFG 727
G S QYS S +++ G +APE L+ YSK +D W+ G + YE+
Sbjct: 214 GFSKQYSDSVSLDVASSFCGTPYYLAPE-------LWERKRYSKKADMWSLGVILYELLT 266
Query: 728 HDNPF--------YQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 776
PF Q Y+ P V M+ L+ LL +P+ RP+ +
Sbjct: 267 LHRPFKGPSQREIMQQVLYGKYDPFPCP-----VSSGMKALLDPLLSKNPALRPTTQ 318
>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of Phototropin-like
Protein Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Phototropin-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The phototropin-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Included in this subfamily are plant
phototropins and predominantly uncharacterized fungal
STKs whose catalytic domains resemble the phototropin
kinase domain. One protein from Neurospora crassa is
called nrc-2. Phototropins are blue-light receptors that
control responses such as phototropism, stromatal
opening, and chloroplast movement in order to optimize
the photosynthetic efficiency of plants. They are
light-activated STKs that contain an N-terminal
photosensory domain and a C-terminal catalytic domain.
The N-terminal domain contains two LOV (Light, Oxygen or
Voltage) domains that binds FMN. Photoexcitation of the
LOV domains results in autophosphorylation at multiple
sites and activation of the catalytic domain. Neurospora
crassa nrc-2 plays a role in growth and development by
controlling entry into the conidiation program.
Length = 316
Score = 55.0 bits (133), Expect = 2e-07
Identities = 45/167 (26%), Positives = 67/167 (40%), Gaps = 33/167 (19%)
Query: 955 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSY-TNKSGLSMQYSSADIELGGN 1013
+L++ +RDLK +NILL E ++++DF S ++ + + +
Sbjct: 118 YLHLLGIVYRDLKPENILL--HESG---HIMLSDFDLSKQSDVEPPPVSKALRKGSRRSS 172
Query: 1014 VALMAPEVALATPGLF--SFV---NY------------SKSDAWTAGTVAYE-IFGHDNP 1055
V + E P SFV Y S D WT G + YE ++G P
Sbjct: 173 VNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGT-TP 231
Query: 1056 FYQSARNTDY------EVNALPQLNTNVPEVMRRLVAKLLENDPSDR 1096
F S R+ + EV P + V R L+ KLL DPS R
Sbjct: 232 FKGSNRDETFSNILKKEVT-FPG-SPPVSSSARDLIRKLLVKDPSKR 276
Score = 45.7 bits (109), Expect = 1e-04
Identities = 50/200 (25%), Positives = 75/200 (37%), Gaps = 57/200 (28%)
Query: 1476 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSY-TNKSGLSMQYSSADIELGGN 1534
+L++ +RDLK +NILL E ++++DF S ++ + + +
Sbjct: 118 YLHLLGIVYRDLKPENILL--HESG---HIMLSDFDLSKQSDVEPPPVSKALRKGSRRSS 172
Query: 1535 VALMAPEVALATPGLF--SFVNYSKSDAWTAGT---VAYEIF---GHDNPFYQSARNTDY 1586
V + E P SFV GT +A E+ GH SA D+
Sbjct: 173 VNSIPSETFSEEPSFRSNSFV----------GTEEYIAPEVISGDGHG-----SA--VDW 215
Query: 1587 WHRKWLWQHLVYSHSSTTPSTVAYE-IFGHDNPFYQSARNTDY------EVNALPQLNTN 1639
W T + YE ++G PF S R+ + EV P +
Sbjct: 216 W----------------TLGILLYEMLYGT-TPFKGSNRDETFSNILKKEVT-FPG-SPP 256
Query: 1640 VPEVMRRLVAKLLENDPSDR 1659
V R L+ KLL DPS R
Sbjct: 257 VSSSARDLIRKLLVKDPSKR 276
Score = 41.9 bits (99), Expect = 0.002
Identities = 35/138 (25%), Positives = 52/138 (37%), Gaps = 28/138 (20%)
Query: 219 LVITDFGSSY-TNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF--SFV---NY--- 269
++++DF S ++ + + +V + E P SFV Y
Sbjct: 142 IMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAP 201
Query: 270 ---------SKSDAWTAGTVAYE-IFGHDNPFYQSARNTDY------EVNALPQLNTNVP 313
S D WT G + YE ++G PF S R+ + EV P + V
Sbjct: 202 EVISGDGHGSAVDWWTLGILLYEMLYGT-TPFKGSNRDETFSNILKKEVT-FPG-SPPVS 258
Query: 314 EVMRRLVAKLLENDPSDR 331
R L+ KLL DPS R
Sbjct: 259 SSARDLIRKLLVKDPSKR 276
Score = 41.9 bits (99), Expect = 0.002
Identities = 35/138 (25%), Positives = 52/138 (37%), Gaps = 28/138 (20%)
Query: 660 LVITDFGSSY-TNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF--SFV---NY--- 710
++++DF S ++ + + +V + E P SFV Y
Sbjct: 142 IMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAP 201
Query: 711 ---------SKSDAWTAGTVAYE-IFGHDNPFYQSARNTDY------EVNALPQLNTNVP 754
S D WT G + YE ++G PF S R+ + EV P + V
Sbjct: 202 EVISGDGHGSAVDWWTLGILLYEMLYGT-TPFKGSNRDETFSNILKKEVT-FPG-SPPVS 258
Query: 755 EVMRRLVAKLLENDPSDR 772
R L+ KLL DPS R
Sbjct: 259 SSARDLIRKLLVKDPSKR 276
>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine
Kinase, Cell Division Cycle 2-like 1. Serine/Threonine
Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CDC2L1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDC2L1, also called
PITSLRE, exists in different isoforms which are named
using the alias CDK11(p). The CDC2L1 gene produces two
protein products, CDK11(p110) and CDK11(p58). CDC2L1 is
also represented by the caspase-processed CDK11(p46).
CDK11(p110), the major isoform, associates with cyclin L
and is expressed throughout the cell cycle. It is
involved in RNA processing and the regulation of
transcription. CDK11(p58) associates with cyclin D3 and
is expressed during the G2/M phase of the cell cycle. It
plays roles in spindle morphogenesis, centrosome
maturation, sister chromatid cohesion, and the completion
of mitosis. CDK11(p46) is formed from the larger isoforms
by caspases during TNFalpha- and Fas-induced apoptosis.
It functions as a downstream effector kinase in apoptotic
signaling pathways and interacts with eukaryotic
initiation factor 3f (eIF3f), p21-activated kinase
(PAK1), and Ran-binding protein (RanBPM).
Length = 293
Score = 54.5 bits (132), Expect = 2e-07
Identities = 43/147 (29%), Positives = 62/147 (42%), Gaps = 28/147 (19%)
Query: 910 GRNM-SLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKS 968
G N+ ++++M+ DL++ + E L QLL GV HL+ + HRDLK+
Sbjct: 75 GSNLDKIYMVMEYVEHDLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDNWILHRDLKT 134
Query: 969 DNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVALAT 1025
N+LL N L I DF GL+ +Y S V + APE+ L
Sbjct: 135 SNLLL-----NNRGILKICDF--------GLAREYGSPLKPYTQLVVTLWYRAPELLLGA 181
Query: 1026 PGLFSFVNYSKS-DAWTAGTVAYEIFG 1051
YS + D W+ G IF
Sbjct: 182 K------EYSTAIDMWSVGC----IFA 198
Score = 54.5 bits (132), Expect = 2e-07
Identities = 43/147 (29%), Positives = 62/147 (42%), Gaps = 28/147 (19%)
Query: 1431 GRNM-SLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKS 1489
G N+ ++++M+ DL++ + E L QLL GV HL+ + HRDLK+
Sbjct: 75 GSNLDKIYMVMEYVEHDLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDNWILHRDLKT 134
Query: 1490 DNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVALAT 1546
N+LL N L I DF GL+ +Y S V + APE+ L
Sbjct: 135 SNLLL-----NNRGILKICDF--------GLAREYGSPLKPYTQLVVTLWYRAPELLLGA 181
Query: 1547 PGLFSFVNYSKS-DAWTAGTVAYEIFG 1572
YS + D W+ G IF
Sbjct: 182 K------EYSTAIDMWSVGC----IFA 198
>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III
myosin-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), Class III myosin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin-like subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins with an N-terminal kinase catalytic domain and a
C-terminal actin-binding motor domain. Class III myosins
are present in the photoreceptors of invertebrates and
vertebrates and in the auditory hair cells of mammals.
The kinase domain of myosin III can phosphorylate several
cytoskeletal proteins, conventional myosin regulatory
light chains, and can autophosphorylate the C-terminal
motor domain. Myosin III may play an important role in
maintaining the structural integrity of photoreceptor
cell microvilli. It may also function as a cargo carrier
during light-dependent translocation, in photoreceptor
cells, of proteins such as transducin and arrestin. The
Drosophila class III myosin, called NinaC (Neither
inactivation nor afterpotential protein C), is critical
in normal adaptation and termination of photoresponse.
Vertebrates contain two isoforms of class III myosin,
IIIA and IIIB. This subfamily also includes mammalian
NIK-like embryo-specific kinase (NESK), Traf2- and
Nck-interacting kinase (TNIK), mitogen-activated protein
kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4)
and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some
MAPK signaling pathways by activating a MAPK kinase
kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is
activated either by a small GTP-binding protein or by an
adaptor protein, which transmits the signal either
directly to a MAP3K to start the triple kinase core
cascade or indirectly through a mediator kinase, a MAP4K.
MAPK signaling cascades are important in mediating
cellular responses to extracellular signals.
Length = 275
Score = 54.2 bits (131), Expect = 2e-07
Identities = 68/272 (25%), Positives = 101/272 (37%), Gaps = 56/272 (20%)
Query: 1308 LPDVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMS 1365
LPD ++ + I +GT VY+A + G A+K+M + +
Sbjct: 1 LPD----PTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIM------DIIEDEEEEIK 50
Query: 1366 KELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLN 1425
+E LRK HPN+ + AF P D L L
Sbjct: 51 EEYNILRK---------------YSNHPNIATFYGAFIKKNPPGNDDQLWLVMELCG--- 92
Query: 1426 PTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHR 1485
GG S+ TDL LR++ +L + + L G+ +L+ ++ HR
Sbjct: 93 --GG-----SV--------TDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENKVIHR 137
Query: 1486 DLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA 1545
D+K NILL N +LV DFG S S L + + G MAPEV
Sbjct: 138 DIKGQNILLT---KNAEVKLV--DFGVSAQLDSTLGRRNTFI-----GTPYWMAPEVIAC 187
Query: 1546 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF 1577
+ + +SD W+ G A E+ P
Sbjct: 188 DEQPDASYDA-RSDVWSLGITAIELADGKPPL 218
Score = 48.8 bits (117), Expect = 1e-05
Identities = 47/187 (25%), Positives = 76/187 (40%), Gaps = 26/187 (13%)
Query: 924 TDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQ 983
TDL LR++ +L + + L G+ +L+ ++ HRD+K NILL N +
Sbjct: 97 TDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENKVIHRDIKGQNILLT---KNAEVK 153
Query: 984 LVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAG 1043
LV DFG S S L + + G MAPEV + + +SD W+ G
Sbjct: 154 LV--DFGVSAQLDSTLGRRNTFI-----GTPYWMAPEVIACDEQPDASYDA-RSDVWSLG 205
Query: 1044 TVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRR----------LVAKLLENDP 1093
A E+ P + + AL ++ N P ++ +++ L +
Sbjct: 206 ITAIELADGKPPLCDM-----HPMRALFKIPRNPPPTLKSPENWSKKFNDFISECLIKNY 260
Query: 1094 SDRPSAE 1100
RP E
Sbjct: 261 EQRPFME 267
Score = 30.3 bits (69), Expect = 7.9
Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 27/109 (24%)
Query: 102 LPDVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMS 159
LPD ++ + I +GT VY+A + G A+K+M + +
Sbjct: 1 LPD----PTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIM------DIIEDEEEEIK 50
Query: 160 KELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSL 208
+E LRK HPN+ + AF P D L
Sbjct: 51 EEYNILRK---------------YSNHPNIATFYGAFIKKNPPGNDDQL 84
Score = 30.3 bits (69), Expect = 7.9
Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 27/109 (24%)
Query: 543 LPDVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMS 600
LPD ++ + I +GT VY+A + G A+K+M + +
Sbjct: 1 LPD----PTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIM------DIIEDEEEEIK 50
Query: 601 KELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSL 649
+E LRK HPN+ + AF P D L
Sbjct: 51 EEYNILRK---------------YSNHPNIATFYGAFIKKNPPGNDDQL 84
>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine
Kinase, Never In Mitosis gene A-related kinase 3.
Serine/Threonine Kinases (STKs), Never In Mitosis gene A
(NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek3 subfamily is one
of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part of
a larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek3 is primarily
localized in the cytoplasm and shows no cell
cycle-dependent changes in its activity. It is present in
the axons of neurons and affects morphogenesis and
polarity through its regulation of microtubule
acetylation. Nek3 modulates the signaling of the
prolactin receptor through its activation of Vav2 and
contributes to prolactin-mediated motility of breast
cancer cells.
Length = 255
Score = 53.8 bits (129), Expect = 2e-07
Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 25/192 (13%)
Query: 915 LFILMKKYNT-DLRNYLRERCAQLSMHERIL-LFTQLLEGVTHLNMHRTAHRDLKSDNIL 972
L+I+M+ + DL ++ + +L + IL F Q+ GV H++ R HRD+KS NI
Sbjct: 73 LYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRVLHRDIKSKNIF 132
Query: 973 LDCSEDNTCPQLVITDFGSS--YTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS 1030
L ++ + DFGS+ T+ + Y G + PE+ P
Sbjct: 133 L----TQNG-KVKLGDFGSARLLTSPGAYACTYV-------GTPYYVPPEIWENMP---- 176
Query: 1031 FVNYSKSDAWTAGTVAYEIFGHDNPFY-QSARNTDYEV--NALPQLNTNVPEVMRRLVAK 1087
+KSD W+ G + YE+ +PF S +N +V + L ++ +R L+ +
Sbjct: 177 --YNNKSDIWSLGCILYELCTLKHPFQANSWKNLILKVCQGSYKPLPSHYSYELRSLIKQ 234
Query: 1088 LLENDPSDRPSA 1099
+ + +P RPSA
Sbjct: 235 MFKRNPRSRPSA 246
Score = 49.6 bits (118), Expect = 6e-06
Identities = 54/235 (22%), Positives = 92/235 (39%), Gaps = 69/235 (29%)
Query: 1436 LFILMKKYNT-DLRNYLRERCAQLSMHERIL-LFTQLLEGVTHLNMHRTAHRDLKSDNIL 1493
L+I+M+ + DL ++ + +L + IL F Q+ GV H++ R HRD+KS NI
Sbjct: 73 LYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRVLHRDIKSKNIF 132
Query: 1494 LDCSEDNTCPQLVITDFGSS--YTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS 1551
L ++ + DFGS+ T+ + Y G + PE+ P
Sbjct: 133 L----TQNG-KVKLGDFGSARLLTSPGAYACTYV-------GTPYYVPPEIWENMP---- 176
Query: 1552 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYWHRKWLWQHLVYS----HSSTTPST 1607
+KSD W+ G + YE+ +PF ++ W++L+ PS
Sbjct: 177 --YNNKSDIWSLGCILYELCTLKHPFQANS-----------WKNLILKVCQGSYKPLPSH 223
Query: 1608 VAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA 1662
+YE +R L+ ++ + +P RPSA
Sbjct: 224 YSYE--------------------------------LRSLIKQMFKRNPRSRPSA 246
Score = 32.6 bits (74), Expect = 1.4
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 270 SKSDAWTAGTVAYEIFGHDNPFY-QSARNTDYEV--NALPQLNTNVPEVMRRLVAKLLEN 326
+KSD W+ G + YE+ +PF S +N +V + L ++ +R L+ ++ +
Sbjct: 179 NKSDIWSLGCILYELCTLKHPFQANSWKNLILKVCQGSYKPLPSHYSYELRSLIKQMFKR 238
Query: 327 DPSDRPSA 334
+P RPSA
Sbjct: 239 NPRSRPSA 246
Score = 32.6 bits (74), Expect = 1.4
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 711 SKSDAWTAGTVAYEIFGHDNPFY-QSARNTDYEV--NALPQLNTNVPEVMRRLVAKLLEN 767
+KSD W+ G + YE+ +PF S +N +V + L ++ +R L+ ++ +
Sbjct: 179 NKSDIWSLGCILYELCTLKHPFQANSWKNLILKVCQGSYKPLPSHYSYELRSLIKQMFKR 238
Query: 768 DPSDRPSA 775
+P RPSA
Sbjct: 239 NPRSRPSA 246
>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine
Kinase, G protein-coupled Receptor Kinase 6.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The GRK subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. GRKs phosphorylate
and regulate G protein-coupled receptors (GPCRs), the
largest superfamily of cell surface receptors which
regulate some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK6 is widely expressed in many tissues. t
is expressed as multiple splice variants with different
domain architectures. It is post-translationally
palmitoylated and localized in the membrane. GRK6 plays
important roles in the regulation of dopamine, M3
muscarinic, opioid, and chemokine receptor signaling. It
also plays maladaptive roles in addiction and Parkinson's
disease. GRK6-deficient mice exhibit altered dopamine
receptor regulation, decreased lymphocyte chemotaxis, and
increased acute inflammation and neutrophil chemotaxis.
Length = 285
Score = 54.3 bits (130), Expect = 2e-07
Identities = 45/155 (29%), Positives = 59/155 (38%), Gaps = 31/155 (20%)
Query: 952 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG 1011
G+ L+ R +RDLK +NILLD D G + GL++ G
Sbjct: 114 GLEDLHQERIVYRDLKPENILLD-------------DHGHIRISDLGLAVHVPEGQTIKG 160
Query: 1012 --GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNA 1069
G V MAPEV FS D W G + YE+ +PF Q + E
Sbjct: 161 RVGTVGYMAPEVVKNERYTFS------PDWWALGCLLYEMIAGQSPFQQRKKKIKRE--E 212
Query: 1070 LPQLNTNVPE--------VMRRLVAKLLENDPSDR 1096
+ +L V E R L LL DP +R
Sbjct: 213 VERLVKEVQEEYSEKFSPDARSLCKMLLCKDPKER 247
Score = 48.1 bits (114), Expect = 2e-05
Identities = 34/112 (30%), Positives = 45/112 (40%), Gaps = 21/112 (18%)
Query: 1473 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG 1532
G+ L+ R +RDLK +NILLD D G + GL++ G
Sbjct: 114 GLEDLHQERIVYRDLKPENILLD-------------DHGHIRISDLGLAVHVPEGQTIKG 160
Query: 1533 --GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR 1582
G V MAPEV FS D W G + YE+ +PF Q +
Sbjct: 161 RVGTVGYMAPEVVKNERYTFS------PDWWALGCLLYEMIAGQSPFQQRKK 206
Score = 37.3 bits (86), Expect = 0.053
Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 16/93 (17%)
Query: 247 GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALP 306
G V MAPEV FS D W G + YE+ +PF Q + E +
Sbjct: 163 GTVGYMAPEVVKNERYTFS------PDWWALGCLLYEMIAGQSPFQQRKKKIKRE--EVE 214
Query: 307 QLNTNVPE--------VMRRLVAKLLENDPSDR 331
+L V E R L LL DP +R
Sbjct: 215 RLVKEVQEEYSEKFSPDARSLCKMLLCKDPKER 247
Score = 37.3 bits (86), Expect = 0.053
Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 16/93 (17%)
Query: 688 GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALP 747
G V MAPEV FS D W G + YE+ +PF Q + E +
Sbjct: 163 GTVGYMAPEVVKNERYTFS------PDWWALGCLLYEMIAGQSPFQQRKKKIKRE--EVE 214
Query: 748 QLNTNVPE--------VMRRLVAKLLENDPSDR 772
+L V E R L LL DP +R
Sbjct: 215 RLVKEVQEEYSEKFSPDARSLCKMLLCKDPKER 247
>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein
Kinase 9-like Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Cyclin-Dependent protein Kinase 9
(CDK9)-like subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The CDK9-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. This
subfamily is composed of CDK9 and CDK12 from higher
eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and
similar proteins. CDK9, BUR1, and CdkC are functionally
equivalent. They act as a kinase for the C-terminal
domain of RNA polymerase II and participate in regulating
mutliple steps of gene expression including transcription
elongation and RNA processing. CDK9 and CdkC associate
with T-type cyclins while BUR1 associates with the cyclin
BUR2. CDK12 is a unique CDK that contains an
arginine/serine-rich (RS) domain, which is predominantly
found in splicing factors. CDK12 interacts with cyclins
L1 and L2, and participates in regulating transcription
and alternative splicing.
Length = 287
Score = 54.1 bits (131), Expect = 2e-07
Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 42/157 (26%)
Query: 914 SLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL 973
S++++ + + DL L + + + QLLEG+ +L+ + HRD+K NIL+
Sbjct: 74 SIYMVFEYMDHDLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSNGILHRDIKGSNILI 133
Query: 974 DCSEDNTCPQLVITDFG----------SSYTNKSGLSMQYSSADIELGGNVAL--MAPEV 1021
+ L + DFG + YTN+ + L PE+
Sbjct: 134 NNDG-----VLKLADFGLARPYTKRNSADYTNRV----------------ITLWYRPPEL 172
Query: 1022 AL-ATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPF 1056
L AT Y + D W+ G + E+F F
Sbjct: 173 LLGAT-------RYGPEVDMWSVGCILAELFLGKPIF 202
Score = 54.1 bits (131), Expect = 2e-07
Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 42/157 (26%)
Query: 1435 SLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL 1494
S++++ + + DL L + + + QLLEG+ +L+ + HRD+K NIL+
Sbjct: 74 SIYMVFEYMDHDLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSNGILHRDIKGSNILI 133
Query: 1495 DCSEDNTCPQLVITDFG----------SSYTNKSGLSMQYSSADIELGGNVAL--MAPEV 1542
+ L + DFG + YTN+ + L PE+
Sbjct: 134 NNDG-----VLKLADFGLARPYTKRNSADYTNRV----------------ITLWYRPPEL 172
Query: 1543 AL-ATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPF 1577
L AT Y + D W+ G + E+F F
Sbjct: 173 LLGAT-------RYGPEVDMWSVGCILAELFLGKPIF 202
>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine
Kinase, Serum- and Glucocorticoid-induced Kinase 1.
Serine/Threonine Kinases (STKs), Serum- and
Glucocorticoid-induced Kinase (SGK) subfamily, SGK1
isoform, catalytic (c) domain. STKs catalyze the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The SGK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. There are three isoforms of SGK, named SGK1,
SGK2, and SGK3. SGK1 is ubiquitously expressed and is
under transcriptional control of numerous stimuli
including cell stress (cell shrinkage), serum, hormones
(gluco- and mineralocorticoids), gonadotropins, growth
factors, interleukin-6, and other cytokines. It plays
roles in sodium retention and potassium elimination in
the kidney, nutrient transport, salt sensitivity, memory
consolidation, and cardiac repolarization. A common SGK1
variant is associated with increased blood pressure and
body weight. SGK1 may also contribute to tumor growth,
neurodegeneration, fibrosing disease, and ischemia.
Length = 325
Score = 54.2 bits (130), Expect = 2e-07
Identities = 52/176 (29%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 931 RERCAQLSMHERILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDF 989
RERC + R + ++ + +L+ +RDLK +NILLD +V+TDF
Sbjct: 89 RERCF---LEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQG-----HIVLTDF 140
Query: 990 GSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYE 1048
G N ++++ G +APEV P Y ++ D W G V YE
Sbjct: 141 GLCKEN-----IEHNGTTSTFCGTPEYLAPEVLHKQP-------YDRTVDWWCLGAVLYE 188
Query: 1049 IFGHDNPFYQSARNT----DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 1100
+ PFY +RNT D +N QL N+ R L+ LL+ D + R A+
Sbjct: 189 MLYGLPPFY--SRNTAEMYDNILNKPLQLKPNITNSARHLLEGLLQKDRTKRLGAK 242
Score = 44.2 bits (104), Expect = 4e-04
Identities = 70/267 (26%), Positives = 109/267 (40%), Gaps = 71/267 (26%)
Query: 1323 KFIAKGTNAVVYEATFRGVE--YALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNED 1380
K I KG+ V A + E YA+K++ AILK KE K + +
Sbjct: 1 KVIGKGSFGKVLLARHKAEEKFYAVKVL-------QKKAILK--KKE----EKHIMSERN 47
Query: 1381 MLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILM 1440
+L+ +V+ HP +V +HF+F + +Y F+L
Sbjct: 48 VLLKNVK----HPFLVGLHFSFQT-------ADKLY--------------------FVLD 76
Query: 1441 KKYNTDLRNYL-RERCAQLSMHERILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSE 1498
+L +L RERC + R + ++ + +L+ +RDLK +NILLD
Sbjct: 77 YINGGELFYHLQRERCF---LEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQG 133
Query: 1499 DNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS 1558
+V+TDFG N ++++ G +APEV P Y ++
Sbjct: 134 -----HIVLTDFGLCKEN-----IEHNGTTSTFCGTPEYLAPEVLHKQP-------YDRT 176
Query: 1559 -DAWTAGTVAYEIFGHDNPFYQSARNT 1584
D W G V YE+ PFY +RNT
Sbjct: 177 VDWWCLGAVLYEMLYGLPPFY--SRNT 201
Score = 41.2 bits (96), Expect = 0.004
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 218 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWT 276
+V+TDFG N ++++ G +APEV P Y ++ D W
Sbjct: 134 HIVLTDFGLCKEN-----IEHNGTTSTFCGTPEYLAPEVLHKQP-------YDRTVDWWC 181
Query: 277 AGTVAYEIFGHDNPFYQSARNT----DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP 332
G V YE+ PFY +RNT D +N QL N+ R L+ LL+ D + R
Sbjct: 182 LGAVLYEMLYGLPPFY--SRNTAEMYDNILNKPLQLKPNITNSARHLLEGLLQKDRTKRL 239
Query: 333 SAE 335
A+
Sbjct: 240 GAK 242
Score = 41.2 bits (96), Expect = 0.004
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 659 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWT 717
+V+TDFG N ++++ G +APEV P Y ++ D W
Sbjct: 134 HIVLTDFGLCKEN-----IEHNGTTSTFCGTPEYLAPEVLHKQP-------YDRTVDWWC 181
Query: 718 AGTVAYEIFGHDNPFYQSARNT----DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP 773
G V YE+ PFY +RNT D +N QL N+ R L+ LL+ D + R
Sbjct: 182 LGAVLYEMLYGLPPFY--SRNTAEMYDNILNKPLQLKPNITNSARHLLEGLLQKDRTKRL 239
Query: 774 SAE 776
A+
Sbjct: 240 GAK 242
>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine
Kinases. Protein Tyrosine Kinase (PTK) family; Tyrosine
kinase expressed in hepatocellular carcinoma (Tec)
subfamily; catalytic (c) domain. The Tec subfamily is
composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk
(Txk), and similar proteins. The PTKc family is part of a
larger superfamily that includes the catalytic domains of
other kinases such as protein serine/threonine kinases,
RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates. Tec
kinases are cytoplasmic (or nonreceptor) tyr kinases
(nRTKs) with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, some
members contain the Tec homology (TH) domain, which
contains proline-rich and zinc-binding regions. Tec
kinases form the second largest subfamily of nRTKs and
are expressed mainly by haematopoietic cells, although
Tec and Bmx are also found in endothelial cells. B-cells
express Btk and Tec, while T-cells express Itk, Txk, and
Tec. Collectively, Tec kinases are expressed in a variety
of myeloid cells such as mast cells, platelets,
macrophages, and dendritic cells. Each Tec kinase shows a
distinct cell-type pattern of expression. The function of
Tec kinases in lymphoid cells have been studied
extensively. They play important roles in the
development, differentiation, maturation, regulation,
survival, and function of B-cells and T-cells. Mutations
in Btk cause the severe B-cell immunodeficiency, X-linked
agammaglobulinaemia (XLA).
Length = 256
Score = 53.6 bits (129), Expect = 3e-07
Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 29/151 (19%)
Query: 909 YG---RNMSLFILMK-KYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHR 964
YG + +FI+ + N L NYLRER +L + + + + E + +L + HR
Sbjct: 65 YGVCTKQRPIFIVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNGFIHR 124
Query: 965 DLKSDNILLDCSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSADIELGGN---VALMAPE 1020
DL + N L+ EDN + ++DFG + Y L QY+S+ G V PE
Sbjct: 125 DLAARNCLV--GEDNV---VKVSDFGLARYV----LDDQYTSS----QGTKFPVKWAPPE 171
Query: 1021 VALATPGLFSFVNY-SKSDAWTAGTVAYEIF 1050
V F + + SKSD W+ G + +E+F
Sbjct: 172 V-------FDYSRFSSKSDVWSFGVLMWEVF 195
Score = 53.6 bits (129), Expect = 3e-07
Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 29/151 (19%)
Query: 1430 YG---RNMSLFILMK-KYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHR 1485
YG + +FI+ + N L NYLRER +L + + + + E + +L + HR
Sbjct: 65 YGVCTKQRPIFIVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNGFIHR 124
Query: 1486 DLKSDNILLDCSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSADIELGGN---VALMAPE 1541
DL + N L+ EDN + ++DFG + Y L QY+S+ G V PE
Sbjct: 125 DLAARNCLV--GEDNV---VKVSDFGLARYV----LDDQYTSS----QGTKFPVKWAPPE 171
Query: 1542 VALATPGLFSFVNY-SKSDAWTAGTVAYEIF 1571
V F + + SKSD W+ G + +E+F
Sbjct: 172 V-------FDYSRFSSKSDVWSFGVLMWEVF 195
Score = 30.5 bits (69), Expect = 8.1
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 256 VALATPGLFSFVNYS-KSDAWTAGTVAYEIF 285
V A P +F + +S KSD W+ G + +E+F
Sbjct: 165 VKWAPPEVFDYSRFSSKSDVWSFGVLMWEVF 195
Score = 30.5 bits (69), Expect = 8.1
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 697 VALATPGLFSFVNYS-KSDAWTAGTVAYEIF 726
V A P +F + +S KSD W+ G + +E+F
Sbjct: 165 VKWAPPEVFDYSRFSSKSDVWSFGVLMWEVF 195
>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like
Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK)
family; Insulin Receptor (InsR) subfamily; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases such
as protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). The InsR subfamily is
composed of InsR, Insulin-like Growth Factor-1 Receptor
(IGF-1R), and similar proteins. PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. InsR and
IGF-1R are receptor tyr kinases (RTKs) composed of two
alphabeta heterodimers. Binding of the ligand (insulin,
IGF-1, or IGF-2) to the extracellular alpha subunit
activates the intracellular tyr kinase domain of the
transmembrane beta subunit. Receptor activation leads to
autophosphorylation, stimulating downstream kinase
activities, which initiate signaling cascades and
biological function. InsR and IGF-1R, which share 84%
sequence identity in their kinase domains, display
physiologically distinct yet overlapping functions in
cell growth, differentiation, and metabolism. InsR
activation leads primarily to metabolic effects while
IGF-1R activation stimulates mitogenic pathways. In cells
expressing both receptors, InsR/IGF-1R hybrids are found
together with classical receptors. Both receptors can
interact with common adaptor molecules such as IRS-1 and
IRS-2.
Length = 277
Score = 53.5 bits (129), Expect = 3e-07
Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 51/205 (24%)
Query: 918 LMKKYNTDLRNYLRERCAQ---------LSMHERILLFTQLLEGVTHLNMHRTAHRDLKS 968
LM K DL++YLR R + ++ + I + ++ +G+ +L + HRDL +
Sbjct: 90 LMAK--GDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKKFVHRDLAA 147
Query: 969 DNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEV 1021
N ++ +ED T I DFG + Y K G + V MAPE
Sbjct: 148 RNCMV--AEDLTVK---IGDFGMTRDIYETDYYRKGGKGLL----------PVRWMAPE- 191
Query: 1022 ALATPGLFSFVNYSKSDAWTAGTVAYEI--FGHDNPFYQSARNTDYEV------NALPQL 1073
+L G+F+ +KSD W+ G V +E+ + P YQ N EV L
Sbjct: 192 SLKD-GVFT----TKSDVWSFGVVLWEMATLA-EQP-YQGLSNE--EVLKFVIDGGHLDL 242
Query: 1074 NTNVPEVMRRLVAKLLENDPSDRPS 1098
N P+ + L+ + +P RP+
Sbjct: 243 PENCPDKLLELMRMCWQYNPKMRPT 267
Score = 50.0 bits (120), Expect = 5e-06
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 39/148 (26%)
Query: 1439 LMKKYNTDLRNYLRERCAQ---------LSMHERILLFTQLLEGVTHLNMHRTAHRDLKS 1489
LM K DL++YLR R + ++ + I + ++ +G+ +L + HRDL +
Sbjct: 90 LMAK--GDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKKFVHRDLAA 147
Query: 1490 DNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEV 1542
N ++ +ED T I DFG + Y K G + V MAPE
Sbjct: 148 RNCMV--AEDLTVK---IGDFGMTRDIYETDYYRKGGKGLL----------PVRWMAPE- 191
Query: 1543 ALATPGLFSFVNYSKSDAWTAGTVAYEI 1570
+L G+F+ +KSD W+ G V +E+
Sbjct: 192 SLKD-GVFT----TKSDVWSFGVVLWEM 214
Score = 31.9 bits (73), Expect = 2.6
Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 35/128 (27%)
Query: 221 ITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSD 273
I DFG + Y K G + V MAPE +L G+F+ +KSD
Sbjct: 160 IGDFGMTRDIYETDYYRKGGKGLL----------PVRWMAPE-SLKD-GVFT----TKSD 203
Query: 274 AWTAGTVAYEI--FGHDNPFYQSARNTDYEV------NALPQLNTNVPEVMRRLVAKLLE 325
W+ G V +E+ + P YQ N EV L N P+ + L+ +
Sbjct: 204 VWSFGVVLWEMATLA-EQP-YQGLSNE--EVLKFVIDGGHLDLPENCPDKLLELMRMCWQ 259
Query: 326 NDPSDRPS 333
+P RP+
Sbjct: 260 YNPKMRPT 267
Score = 31.9 bits (73), Expect = 2.6
Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 35/128 (27%)
Query: 662 ITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSD 714
I DFG + Y K G + V MAPE +L G+F+ +KSD
Sbjct: 160 IGDFGMTRDIYETDYYRKGGKGLL----------PVRWMAPE-SLKD-GVFT----TKSD 203
Query: 715 AWTAGTVAYEI--FGHDNPFYQSARNTDYEV------NALPQLNTNVPEVMRRLVAKLLE 766
W+ G V +E+ + P YQ N EV L N P+ + L+ +
Sbjct: 204 VWSFGVVLWEMATLA-EQP-YQGLSNE--EVLKFVIDGGHLDLPENCPDKLLELMRMCWQ 259
Query: 767 NDPSDRPS 774
+P RP+
Sbjct: 260 YNPKMRPT 267
>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine
Kinase, Thousand-and-one amino acids 1. Serine/threonine
kinases (STKs), thousand-and-one amino acids 1 (TAO1)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The TAO
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
TAO1 is sometimes referred to as prostate-derived sterile
20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK
through direct interaction with and activation of MEK3.
TAO1 is highly expressed in the brain and may play a role
in neuronal apoptosis. TAO1 interacts with the checkpoint
proteins BubR1 and Mad2, and plays an important role in
regulating mitotic progression, which is required for
both chromosome congression and checkpoint-induced
anaphase delay. TAO1 may play a role in protecting
genomic stability.
Length = 317
Score = 53.9 bits (129), Expect = 3e-07
Identities = 50/157 (31%), Positives = 71/157 (45%), Gaps = 25/157 (15%)
Query: 950 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP-QLVITDFGSSYTNKSGLSMQYSSADI 1008
L+G+ +L+ H HRD+K+ NILL T P Q+ + DFGS+ +S
Sbjct: 135 LQGLAYLHSHNMIHRDIKAGNILL------TEPGQVKLADFGSA---------SIASPAN 179
Query: 1009 ELGGNVALMAPEVALAT-PGLFSFVNYSKSDAWTAGTVAYEIFGHDNP-FYQSARNTDYE 1066
G MAPEV LA G + K D W+ G E+ P F +A + Y
Sbjct: 180 SFVGTPYWMAPEVILAMDEGQYD----GKVDVWSLGITCIELAERKPPLFNMNAMSALYH 235
Query: 1067 V--NALPQLNTNV-PEVMRRLVAKLLENDPSDRPSAE 1100
+ N P L +N + R V L+ P DRP++E
Sbjct: 236 IAQNESPTLQSNEWSDYFRNFVDSCLQKIPQDRPTSE 272
Score = 46.6 bits (110), Expect = 6e-05
Identities = 50/195 (25%), Positives = 73/195 (37%), Gaps = 59/195 (30%)
Query: 1471 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP-QLVITDFGSSYTNKSGLSMQYSSADI 1529
L+G+ +L+ H HRD+K+ NILL T P Q+ + DFGS+ +S
Sbjct: 135 LQGLAYLHSHNMIHRDIKAGNILL------TEPGQVKLADFGSA---------SIASPAN 179
Query: 1530 ELGGNVALMAPEVALAT-PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYWH 1588
G MAPEV LA G + K D W+ G E+ P +
Sbjct: 180 SFVGTPYWMAPEVILAMDEGQYD----GKVDVWSLGITCIELAERKPPLF---------- 225
Query: 1589 RKWLWQHLVYSHSSTTPSTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLV 1648
+ + Y I +++P QS +DY R V
Sbjct: 226 -------------NMNAMSALYHIAQNESPTLQSNEWSDY---------------FRNFV 257
Query: 1649 AKLLENDPSDRPSAE 1663
L+ P DRP++E
Sbjct: 258 DSCLQKIPQDRPTSE 272
Score = 35.4 bits (81), Expect = 0.26
Identities = 36/123 (29%), Positives = 51/123 (41%), Gaps = 18/123 (14%)
Query: 218 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT-PGLFSFVNYSKSDAWT 276
Q+ + DFGS+ +S G MAPEV LA G + K D W+
Sbjct: 163 QVKLADFGSA---------SIASPANSFVGTPYWMAPEVILAMDEGQYD----GKVDVWS 209
Query: 277 AGTVAYEIFGHDNP-FYQSARNTDYEV--NALPQLNTNV-PEVMRRLVAKLLENDPSDRP 332
G E+ P F +A + Y + N P L +N + R V L+ P DRP
Sbjct: 210 LGITCIELAERKPPLFNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVDSCLQKIPQDRP 269
Query: 333 SAE 335
++E
Sbjct: 270 TSE 272
Score = 35.4 bits (81), Expect = 0.26
Identities = 36/123 (29%), Positives = 51/123 (41%), Gaps = 18/123 (14%)
Query: 659 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT-PGLFSFVNYSKSDAWT 717
Q+ + DFGS+ +S G MAPEV LA G + K D W+
Sbjct: 163 QVKLADFGSA---------SIASPANSFVGTPYWMAPEVILAMDEGQYD----GKVDVWS 209
Query: 718 AGTVAYEIFGHDNP-FYQSARNTDYEV--NALPQLNTNV-PEVMRRLVAKLLENDPSDRP 773
G E+ P F +A + Y + N P L +N + R V L+ P DRP
Sbjct: 210 LGITCIELAERKPPLFNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVDSCLQKIPQDRP 269
Query: 774 SAE 776
++E
Sbjct: 270 TSE 272
>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase,
C-ros. Protein Tyrosine Kinases (PTK) family; C-ros and
Drosophila Sevenless proteins; catalytic (c) domain. The
PTKc family is part of a larger superfamily that includes
the catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. The
proto-oncogene c-ros encodes an orphan receptor tyr
kinase (RTK) with an unknown ligand. RTKs contain an
extracellular ligand-binding domain, a transmembrane
region, and an intracellular tyr kinase domain. RTKs are
usually activated through ligand binding, which causes
dimerization and autophosphorylation of the intracellular
tyr kinase catalytic domain. C-ros is expressed in
embryonic cells of the kidney, intestine and lung, but
disappears soon after birth. It persists only in the
adult epididymis. Male mice bearing inactive mutations of
c-ros lack the initial segment of the epididymis and are
infertile. The Drosophila protein, Sevenless, is required
for the specification of the R7 photoreceptor cell during
eye development.
Length = 269
Score = 53.3 bits (128), Expect = 3e-07
Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 35/192 (18%)
Query: 925 DLRNYLRERCAQ------LSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSED 978
DL +YLR+ + L++ E + + + +G +L HRDL + N L+ +
Sbjct: 85 DLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVS-EKG 143
Query: 979 NTCPQLV-ITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS 1030
++V I DFG S Y K G + V MAPE L G F+
Sbjct: 144 YDADRVVKIGDFGLARDIYKSDYYRKEGEGLL----------PVRWMAPESLL--DGKFT 191
Query: 1031 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD--YEVNALPQLNT--NVPEVMRRLVA 1086
++SD W+ G + +EI Y + N + V A +L N P+ + +L+
Sbjct: 192 ----TQSDVWSFGVLMWEILTLGQQPYPALNNQEVLQHVTAGGRLQKPENCPDKIYQLMT 247
Query: 1087 KLLENDPSDRPS 1098
DPS+RP+
Sbjct: 248 NCWAQDPSERPT 259
Score = 46.0 bits (109), Expect = 1e-04
Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 31/157 (19%)
Query: 1446 DLRNYLRERCAQ------LSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSED 1499
DL +YLR+ + L++ E + + + +G +L HRDL + N L+ +
Sbjct: 85 DLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVS-EKG 143
Query: 1500 NTCPQLV-ITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS 1551
++V I DFG S Y K G + V MAPE L G F+
Sbjct: 144 YDADRVVKIGDFGLARDIYKSDYYRKEGEGLL----------PVRWMAPESLL--DGKFT 191
Query: 1552 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYWH 1588
++SD W+ G + +EI Y + N +
Sbjct: 192 ----TQSDVWSFGVLMWEILTLGQQPYPALNNQEVLQ 224
Score = 41.4 bits (97), Expect = 0.002
Identities = 42/154 (27%), Positives = 62/154 (40%), Gaps = 31/154 (20%)
Query: 192 MHFAFTDFVPSIPDSSLIYPKDNTCPQLV-ITDFG-------SSYTNKSGLSMQYSSADI 243
MHF D + L+ K ++V I DFG S Y K G +
Sbjct: 125 MHFIHRDLAAR---NCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLL------ 175
Query: 244 ELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD--YE 301
V MAPE L G F+ ++SD W+ G + +EI Y + N +
Sbjct: 176 ----PVRWMAPESLL--DGKFT----TQSDVWSFGVLMWEILTLGQQPYPALNNQEVLQH 225
Query: 302 VNALPQLNT--NVPEVMRRLVAKLLENDPSDRPS 333
V A +L N P+ + +L+ DPS+RP+
Sbjct: 226 VTAGGRLQKPENCPDKIYQLMTNCWAQDPSERPT 259
Score = 41.4 bits (97), Expect = 0.002
Identities = 42/154 (27%), Positives = 62/154 (40%), Gaps = 31/154 (20%)
Query: 633 MHFAFTDFVPSIPDSSLIYPKDNTCPQLV-ITDFG-------SSYTNKSGLSMQYSSADI 684
MHF D + L+ K ++V I DFG S Y K G +
Sbjct: 125 MHFIHRDLAAR---NCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLL------ 175
Query: 685 ELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD--YE 742
V MAPE L G F+ ++SD W+ G + +EI Y + N +
Sbjct: 176 ----PVRWMAPESLL--DGKFT----TQSDVWSFGVLMWEILTLGQQPYPALNNQEVLQH 225
Query: 743 VNALPQLNT--NVPEVMRRLVAKLLENDPSDRPS 774
V A +L N P+ + +L+ DPS+RP+
Sbjct: 226 VTAGGRLQKPENCPDKIYQLMTNCWAQDPSERPT 259
>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase 2. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, MSK2, N-terminal
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MSK subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MSKs contain an
N-terminal kinase domain (NTD) from the AGC family and a
C-terminal kinase domain (CTD) from the CAMK family,
similar to 90 kDa ribosomal protein S6 kinases (RSKs).
MSKs are activated by two major signaling cascades, the
Ras-MAPK and p38 stress kinase pathways, which trigger
phosphorylation in the activation loop (A-loop) of the
CTD of MSK. The active CTD phosphorylates the hydrophobic
motif (HM) of NTD, which facilitates the phosphorylation
of the A-loop and activates the NTD, which in turn
phosphorylates downstream targets. MSK2 and MSK1 play
nonredundant roles in activating histone H3 kinases,
which play pivotal roles in compaction of the chromatin
fiber. MSK2 is the required H3 kinase in response to
stress stimuli and activation of the p38 MAPK pathway.
MSK2 also plays a role in the pathogenesis of psoriasis.
Length = 332
Score = 53.8 bits (129), Expect = 4e-07
Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 35/183 (19%)
Query: 927 RNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVI 986
R+ E + E IL + HL+ +RD+K +NILLD SE + +V+
Sbjct: 99 RDNFSEDEVRFYSGEIIL-------ALEHLHKLGIVYRDIKLENILLD-SEGH----VVL 146
Query: 987 TDFGSSYTNKSGLSMQYSSADIE----LGGNVALMAPEVALATPGLFSFVNYSKSDAWTA 1042
TDF GLS ++ S + E G + MAPE+ G V D W+
Sbjct: 147 TDF--------GLSKEFLSEEKERTYSFCGTIEYMAPEIIRGKGGHGKAV-----DWWSL 193
Query: 1043 GTVAYEIFGHDNPF-YQSARNTDYEVNAL-----PQLNTNVPEVMRRLVAKLLENDPSDR 1096
G + +E+ +PF + RNT EV+ P + + + L+ KLL DP R
Sbjct: 194 GILIFELLTGASPFTLEGERNTQSEVSRRILKCDPPFPSFIGPEAQDLLHKLLRKDPKKR 253
Query: 1097 PSA 1099
A
Sbjct: 254 LGA 256
Score = 43.4 bits (102), Expect = 8e-04
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 30/142 (21%)
Query: 1448 RNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVI 1507
R+ E + E IL + HL+ +RD+K +NILLD SE + +V+
Sbjct: 99 RDNFSEDEVRFYSGEIIL-------ALEHLHKLGIVYRDIKLENILLD-SEGH----VVL 146
Query: 1508 TDFGSSYTNKSGLSMQYSSADIE----LGGNVALMAPEVALATPGLFSFVNYSKSDAWTA 1563
TDF GLS ++ S + E G + MAPE+ G V D W+
Sbjct: 147 TDF--------GLSKEFLSEEKERTYSFCGTIEYMAPEIIRGKGGHGKAV-----DWWSL 193
Query: 1564 GTVAYEIFGHDNPF-YQSARNT 1584
G + +E+ +PF + RNT
Sbjct: 194 GILIFELLTGASPFTLEGERNT 215
>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase,
Interleukin-2-inducible T-cell Kinase. Protein Tyrosine
Kinase (PTK) family; Interleukin-2 (IL-2)-inducible
T-cell kinase (Itk); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Itk (also
known as Tsk or Emt) is a member of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, Itk
contains the Tec homology (TH) domain containing one
proline-rich region and a zinc-binding region. Tec
kinases are expressed mainly by haematopoietic cells. Itk
is expressed in T-cells and mast cells, and is important
in their development and differentiation. Of the three
Tec kinases expressed in T-cells, Itk plays the
predominant role in T-cell receptor (TCR) signaling. It
is activated by phosphorylation upon TCR crosslinking and
is involved in the pathway resulting in phospholipase
C-gamma1 activation and actin polymerization. It also
plays a role in the downstream signaling of the T-cell
costimulatory receptor CD28, the T-cell surface receptor
CD2, and the chemokine receptor CXCR4. In addition, Itk
is crucial for the development of T-helper(Th)2 effector
responses.
Length = 256
Score = 53.0 bits (127), Expect = 4e-07
Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 29/185 (15%)
Query: 926 LRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 985
L +YLR + + S + + + EG+ +L HRDL + N L+ E+ +
Sbjct: 86 LSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSNVIHRDLAARNCLV--GENQV---VK 140
Query: 986 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGT 1044
++DFG + + L QY+S+ G V ++P +FSF YS KSD W+ G
Sbjct: 141 VSDFGMT---RFVLDDQYTSST---GTKFP-----VKWSSPEVFSFSKYSSKSDVWSFGV 189
Query: 1045 VAYEIFGHDNPFYQSARNTDY--EVNA-----LPQL-NTNVPEVMRRLVAKLLENDPSDR 1096
+ +E+F Y++ N++ +NA P+L + +V E+M+ + P DR
Sbjct: 190 LMWEVFSEGKTPYENRSNSEVVETINAGFRLYKPRLASQSVYELMQH----CWKERPEDR 245
Query: 1097 PSAEL 1101
PS L
Sbjct: 246 PSFSL 250
Score = 49.2 bits (117), Expect = 7e-06
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 17/140 (12%)
Query: 1447 LRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 1506
L +YLR + + S + + + EG+ +L HRDL + N L+ E+ +
Sbjct: 86 LSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSNVIHRDLAARNCLV--GENQV---VK 140
Query: 1507 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGT 1565
++DFG + + L QY+S+ G V ++P +FSF YS KSD W+ G
Sbjct: 141 VSDFGMT---RFVLDDQYTSST---GTKFP-----VKWSSPEVFSFSKYSSKSDVWSFGV 189
Query: 1566 VAYEIFGHDNPFYQSARNTD 1585
+ +E+F Y++ N++
Sbjct: 190 LMWEVFSEGKTPYENRSNSE 209
Score = 39.2 bits (91), Expect = 0.012
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 13/90 (14%)
Query: 256 VALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDY--EVNA-----LPQ 307
V ++P +FSF YS KSD W+ G + +E+F Y++ N++ +NA P+
Sbjct: 165 VKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSNSEVVETINAGFRLYKPR 224
Query: 308 L-NTNVPEVMRRLVAKLLENDPSDRPSAEL 336
L + +V E+M+ + P DRPS L
Sbjct: 225 LASQSVYELMQH----CWKERPEDRPSFSL 250
Score = 39.2 bits (91), Expect = 0.012
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 13/90 (14%)
Query: 697 VALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDY--EVNA-----LPQ 748
V ++P +FSF YS KSD W+ G + +E+F Y++ N++ +NA P+
Sbjct: 165 VKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSNSEVVETINAGFRLYKPR 224
Query: 749 L-NTNVPEVMRRLVAKLLENDPSDRPSAEL 777
L + +V E+M+ + P DRPS L
Sbjct: 225 LASQSVYELMQH----CWKERPEDRPSFSL 250
>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein
Serine/Threonine Kinases, Mammalian Ste20-like protein
kinase 1 and 2. Serine/threonine kinases (STKs),
mammalian Ste20-like protein kinase 1 (MST1) and MST2
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MST1/2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of MST1, MST2, and
related proteins including Drosophila Hippo and
Dictyostelium discoideum Krs1 (kinase responsive to
stress 1). MST1/2 and Hippo are involved in a conserved
pathway that governs cell contact inhibition, organ size
control, and tumor development. MST1 activates the
mitogen-activated protein kinases (MAPKs) p38 and c-Jun
N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and
MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase
kinase kinase (MAPKKKK). Activation of JNK by MST1 leads
to caspase activation and apoptosis. MST1 has also been
implicated in cell proliferation and differentiation.
Krs1 may regulate cell growth arrest and apoptosis in
response to cellular stress.
Length = 256
Score = 53.0 bits (128), Expect = 4e-07
Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 38/208 (18%)
Query: 907 GGYGRNMSLFILMKKY--NTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHR 964
G Y +N L+I+M+ Y + + ++ L+ E + Q L+G+ +L+ ++ HR
Sbjct: 65 GSYFKNTDLWIVME-YCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSNKKIHR 123
Query: 965 DLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIE-LGGNVALMAPEVAL 1023
D+K+ NILL+ E+ + DFG S + + A + G MAPEV
Sbjct: 124 DIKAGNILLN--EEGQAK---LADFGVSG------QLTDTMAKRNTVIGTPFWMAPEVIQ 172
Query: 1024 ATPGLFSFVNY-SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMR 1082
+ Y +K+D W+ G A E+ P+ + + A+ + P +
Sbjct: 173 E-------IGYNNKADIWSLGITAIEMAEGKPPYSDI-----HPMRAIFMIPNKPPPTLS 220
Query: 1083 ----------RLVAKLLENDPSDRPSAE 1100
V K L DP +RPSA
Sbjct: 221 DPEKWSPEFNDFVKKCLVKDPEERPSAI 248
Score = 48.4 bits (116), Expect = 1e-05
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 23/148 (15%)
Query: 1428 GGYGRNMSLFILMKKY--NTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHR 1485
G Y +N L+I+M+ Y + + ++ L+ E + Q L+G+ +L+ ++ HR
Sbjct: 65 GSYFKNTDLWIVME-YCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSNKKIHR 123
Query: 1486 DLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIE-LGGNVALMAPEVAL 1544
D+K+ NILL+ E+ + DFG S + + A + G MAPEV
Sbjct: 124 DIKAGNILLN--EEGQAK---LADFGVSG------QLTDTMAKRNTVIGTPFWMAPEVIQ 172
Query: 1545 ATPGLFSFVNY-SKSDAWTAGTVAYEIF 1571
+ Y +K+D W+ G A E+
Sbjct: 173 E-------IGYNNKADIWSLGITAIEMA 193
>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein
Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1.
Serine/threonine kinases (STKs), plant MAP/ERK kinase
kinase 1 (MEKK1)-like subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The plant MEKK1 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
plant mitogen-activated protein kinase (MAPK) kinase
kinases (MAPKKKs or MKKKs or MAP3Ks) including
Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK
that phosphorylates and activates MAPK kinases (MAPKKs or
MKKs or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that
regulates systemic acquired resistance. MEKK1 also
participates in the regulation of temperature-sensitive
and tissue-specific cell death.
Length = 258
Score = 52.8 bits (127), Expect = 4e-07
Identities = 51/199 (25%), Positives = 82/199 (41%), Gaps = 48/199 (24%)
Query: 914 SLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL 973
SL L+KKY + E + ++ R Q+L G+ +L+ T HRD+K NIL+
Sbjct: 88 SLAKLLKKYGS-----FPE--PVIRLYTR-----QILLGLEYLHDRNTVHRDIKGANILV 135
Query: 974 DCSEDNTCPQLVITDFGSS---YTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS 1030
D N +L DFG + S + G+ MAPEV G +
Sbjct: 136 D---TNGVVKL--ADFGMAKQVVEFSFAKSFK---------GSPYWMAPEVIAQQ-GGYG 180
Query: 1031 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTN-----VPEVM---- 1081
+D W+ G E+ P+ Q V A+ ++ + +P+ +
Sbjct: 181 L----AADIWSLGCTVLEMATGKPPWSQL-----EGVAAVFKIGRSKELPPIPDHLSDEA 231
Query: 1082 RRLVAKLLENDPSDRPSAE 1100
+ + K L+ DPS RP+A
Sbjct: 232 KDFILKCLQRDPSLRPTAA 250
Score = 42.0 bits (99), Expect = 0.001
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 34/148 (22%)
Query: 1435 SLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL 1494
SL L+KKY + E + ++ R Q+L G+ +L+ T HRD+K NIL+
Sbjct: 88 SLAKLLKKYGS-----FPE--PVIRLYTR-----QILLGLEYLHDRNTVHRDIKGANILV 135
Query: 1495 DCSEDNTCPQLVITDFGSS---YTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS 1551
D N +L DFG + S + G+ MAPEV G +
Sbjct: 136 D---TNGVVKL--ADFGMAKQVVEFSFAKSFK---------GSPYWMAPEVIAQQ-GGYG 180
Query: 1552 FVNYSKSDAWTAGTVAYEIFGHDNPFYQ 1579
+D W+ G E+ P+ Q
Sbjct: 181 L----AADIWSLGCTVLEMATGKPPWSQ 204
>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase,
Fes. Protein Tyrosine Kinase (PTK) family; Fes (or Fps)
kinase subfamily; catalytic (c) domain. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fes
subfamily proteins are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal region with FCH
(Fes/Fer/CIP4 homology) and coiled-coil domains, followed
by a SH2 domain, and a C-terminal catalytic domain. The
genes for Fes (feline sarcoma) and Fps (Fujinami poultry
sarcoma) were first isolated from tumor-causing
retroviruses. The viral oncogenes encode chimeric Fes
proteins consisting of Gag sequences at the N-termini,
resulting in unregulated tyr kinase activity. Fes kinase
is expressed in myeloid, vascular endothelial,
epithelial, and neuronal cells. It plays important roles
in cell growth and differentiation, angiogenesis,
inflammation and immunity, and cytoskeletal regulation. A
recent study implicates Fes kinase as a tumor suppressor
in colorectal cancer.
Length = 252
Score = 52.7 bits (126), Expect = 4e-07
Identities = 51/180 (28%), Positives = 77/180 (42%), Gaps = 22/180 (12%)
Query: 925 DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 984
D +LR +L + E I + G+ +L HRDL + N L+ +E N L
Sbjct: 79 DFLTFLRTEGPRLKVKELIQMVENAAAGMEYLESKHCIHRDLAARNCLV--TEKNV---L 133
Query: 985 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAG 1043
I+DFG S + G+ Y+S GG + V P ++ Y S+SD W+ G
Sbjct: 134 KISDFGMSREEEDGV---YAST----GG---MKQIPVKWTAPEALNYGRYSSESDVWSFG 183
Query: 1044 TVAYEIFG-----HDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS 1098
+ +E F + N Q R + LP P+ + RL+ + E DP RPS
Sbjct: 184 ILLWEAFSLGAVPYANLSNQQTREAIEQGVRLP-CPELCPDAVYRLMERCWEYDPGQRPS 242
Score = 44.6 bits (105), Expect = 2e-04
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 16/127 (12%)
Query: 1446 DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 1505
D +LR +L + E I + G+ +L HRDL + N L+ +E N L
Sbjct: 79 DFLTFLRTEGPRLKVKELIQMVENAAAGMEYLESKHCIHRDLAARNCLV--TEKNV---L 133
Query: 1506 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAG 1564
I+DFG S + G+ Y+S GG + V P ++ Y S+SD W+ G
Sbjct: 134 KISDFGMSREEEDGV---YAST----GG---MKQIPVKWTAPEALNYGRYSSESDVWSFG 183
Query: 1565 TVAYEIF 1571
+ +E F
Sbjct: 184 ILLWEAF 190
Score = 33.8 bits (77), Expect = 0.61
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 17/121 (14%)
Query: 219 LVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTA 277
L I+DFG S + G+ Y+S GG + V P ++ YS +SD W+
Sbjct: 133 LKISDFGMSREEEDGV---YAST----GG---MKQIPVKWTAPEALNYGRYSSESDVWSF 182
Query: 278 GTVAYEIFG-----HDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP 332
G + +E F + N Q R + LP P+ + RL+ + E DP RP
Sbjct: 183 GILLWEAFSLGAVPYANLSNQQTREAIEQGVRLP-CPELCPDAVYRLMERCWEYDPGQRP 241
Query: 333 S 333
S
Sbjct: 242 S 242
Score = 33.8 bits (77), Expect = 0.61
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 17/121 (14%)
Query: 660 LVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTA 718
L I+DFG S + G+ Y+S GG + V P ++ YS +SD W+
Sbjct: 133 LKISDFGMSREEEDGV---YAST----GG---MKQIPVKWTAPEALNYGRYSSESDVWSF 182
Query: 719 GTVAYEIFG-----HDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP 773
G + +E F + N Q R + LP P+ + RL+ + E DP RP
Sbjct: 183 GILLWEAFSLGAVPYANLSNQQTREAIEQGVRLP-CPELCPDAVYRLMERCWEYDPGQRP 241
Query: 774 S 774
S
Sbjct: 242 S 242
>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine
Kinase, Thousand-and-one amino acids 2. Serine/threonine
kinases (STKs), thousand-and-one amino acids 2 (TAO2)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The TAO
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
Human TAO2 is also known as prostate-derived Ste20-like
kinase (PSK) and was identified in a screen for
overexpressed RNAs in prostate cancer. TAO2 activates
both p38 and c-Jun N-terminal kinase (JNK), by
phosphorylating and activating the respective MAP/ERK
kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6
and MKK4/MKK7. TAO2 contains a long C-terminal extension
with autoinhibitory segments. It is activated by the
release of this inhibition and the phosphorylation of its
activation loop serine. TAO2 functions as a regulator of
actin cytoskeletal and microtubule organization. In
addition, it regulates the transforming growth
factor-activated kinase 1 (TAK1), which is a MAPKKK that
plays an essential role in the signaling pathways of
tumor necrosis factor (TNF), interleukin 1 (IL-1), and
Toll-like receptor (TLR).
Length = 308
Score = 53.5 bits (128), Expect = 4e-07
Identities = 49/158 (31%), Positives = 69/158 (43%), Gaps = 25/158 (15%)
Query: 950 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV-ITDFGSSYTNKSGLSMQYSSADI 1008
L+G+ +L+ H HRD+K+ NILL + P LV + DFGS+
Sbjct: 125 LQGLAYLHSHNMIHRDVKAGNILL------SEPGLVKLGDFGSASIMAPANXFV------ 172
Query: 1009 ELGGNVALMAPEVALAT-PGLFSFVNYSKSDAWTAGTVAYEIFGHDNP-FYQSARNTDYE 1066
G MAPEV LA G + K D W+ G E+ P F +A + Y
Sbjct: 173 ---GTPYWMAPEVILAMDEGQYD----GKVDVWSLGITCIELAERKPPLFNMNAMSALYH 225
Query: 1067 V--NALPQLNTNV-PEVMRRLVAKLLENDPSDRPSAEL 1101
+ N P L + E R V L+ P DRP++E+
Sbjct: 226 IAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEV 263
Score = 44.7 bits (105), Expect = 2e-04
Identities = 48/196 (24%), Positives = 72/196 (36%), Gaps = 59/196 (30%)
Query: 1471 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV-ITDFGSSYTNKSGLSMQYSSADI 1529
L+G+ +L+ H HRD+K+ NILL + P LV + DFGS+
Sbjct: 125 LQGLAYLHSHNMIHRDVKAGNILL------SEPGLVKLGDFGSASIMAPANXFV------ 172
Query: 1530 ELGGNVALMAPEVALAT-PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYWH 1588
G MAPEV LA G + K D W+ G E+ P +
Sbjct: 173 ---GTPYWMAPEVILAMDEGQYD----GKVDVWSLGITCIELAERKPPLF---------- 215
Query: 1589 RKWLWQHLVYSHSSTTPSTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLV 1648
+ + Y I +++P QS ++Y R V
Sbjct: 216 -------------NMNAMSALYHIAQNESPALQSGHWSEY---------------FRNFV 247
Query: 1649 AKLLENDPSDRPSAEL 1664
L+ P DRP++E+
Sbjct: 248 DSCLQKIPQDRPTSEV 263
Score = 35.0 bits (80), Expect = 0.33
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 252 MAPEVALAT-PGLFSFVNYSKSDAWTAGTVAYEIFGHDNP-FYQSARNTDYEV--NALPQ 307
MAPEV LA G + K D W+ G E+ P F +A + Y + N P
Sbjct: 178 MAPEVILAMDEGQYD----GKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPA 233
Query: 308 LNTNV-PEVMRRLVAKLLENDPSDRPSAEL 336
L + E R V L+ P DRP++E+
Sbjct: 234 LQSGHWSEYFRNFVDSCLQKIPQDRPTSEV 263
Score = 35.0 bits (80), Expect = 0.33
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 693 MAPEVALAT-PGLFSFVNYSKSDAWTAGTVAYEIFGHDNP-FYQSARNTDYEV--NALPQ 748
MAPEV LA G + K D W+ G E+ P F +A + Y + N P
Sbjct: 178 MAPEVILAMDEGQYD----GKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPA 233
Query: 749 LNTNV-PEVMRRLVAKLLENDPSDRPSAEL 777
L + E R V L+ P DRP++E+
Sbjct: 234 LQSGHWSEYFRNFVDSCLQKIPQDRPTSEV 263
>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), PCTAIRE-like subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The PCTAIRE-like subfamily is part of a
larger superfamily that includes the catalytic domains of
other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily share sequence similarity with Cyclin-Dependent
Kinases (CDKs), which belong to a large family of STKs
that are regulated by their cognate cyclins. Together,
CDKs and cyclins are involved in the control of
cell-cycle progression, transcription, and neuronal
function. The association of PCTAIRE-like proteins with
cyclins has not been widely studied, although PFTAIRE-1
has been shown to function as a CDK which is regulated by
cyclin D3 as well as the membrane-associated cyclin Y.
PCTAIRE-like proteins show unusual expression patterns
with high levels in post-mitotic tissues, suggesting that
they may be involved in regulating post-mitotic cellular
events.
Length = 291
Score = 53.2 bits (128), Expect = 5e-07
Identities = 65/229 (28%), Positives = 96/229 (41%), Gaps = 38/229 (16%)
Query: 1445 TDLRNYLRERCAQ-LSMHE-RILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTC 1502
TDL+ Y+ + C LSMH R+ LF QLL G+ + + R HRDLK N+L+ +
Sbjct: 87 TDLKQYM-DDCGGGLSMHNVRLFLF-QLLRGLAYCHQRRVLHRDLKPQNLLI-----SER 139
Query: 1503 PQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAW 1561
+L + DFG + KS S YS+ + L P+V L + YS S D W
Sbjct: 140 GELKLADFGLARA-KSVPSKTYSNEVVTLW----YRPPDVLLGS------TEYSTSLDMW 188
Query: 1562 TAGTVAYEIFGHDNPFYQSARNTDYWHRKWLWQHLVYSHSSTTPSTVAYEIFGHDNPFYQ 1621
G + YE+ F S D H+ + ++ + + T V NP ++
Sbjct: 189 GVGCIFYEMATGRPLFPGSTDVEDQLHKIFR---VLGTPTEETWPGV------SSNPEFK 239
Query: 1622 SARNTDYEVNALPQLNTNVPEVMRR-----LVAKLLENDPSDRPSAELA 1665
Y L + P + R L K L+ +P R SA A
Sbjct: 240 PYSFPFYPPRPLIN---HAPRLDRIPHGEELALKFLQYEPKKRISAAEA 285
Score = 48.9 bits (117), Expect = 1e-05
Identities = 61/220 (27%), Positives = 85/220 (38%), Gaps = 62/220 (28%)
Query: 924 TDLRNYLRERCAQ-LSMHE-RILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTC 981
TDL+ Y+ + C LSMH R+ LF QLL G+ + + R HRDLK N+L+ +
Sbjct: 87 TDLKQYM-DDCGGGLSMHNVRLFLF-QLLRGLAYCHQRRVLHRDLKPQNLLI-----SER 139
Query: 982 PQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAW 1040
+L + DFG + KS S YS+ + L P+V L + YS S D W
Sbjct: 140 GELKLADFGLARA-KSVPSKTYSNEVVTLW----YRPPDVLLGS------TEYSTSLDMW 188
Query: 1041 TAGTVAYE--------------------IFG-------------HDNPFYQSARNTDYEV 1067
G + YE IF NP ++ Y
Sbjct: 189 GVGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSNPEFKPYSFPFYPP 248
Query: 1068 NALPQLNTNVPEVMRR-----LVAKLLENDPSDRPSAELA 1102
L + P + R L K L+ +P R SA A
Sbjct: 249 RPLIN---HAPRLDRIPHGEELALKFLQYEPKKRISAAEA 285
>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase
3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3)-like subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MEKK3-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
MEKK3, MEKK2, and related proteins, all containing an
N-terminal PB1 domain, which mediates oligomerization,
and a C-terminal catalytic domain. MEKK2 and MEKK3 are
mitogen-activated protein kinase (MAPK) kinase kinases
(MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate
and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks),
which in turn phosphorylate and activate MAPKs during
signaling cascades that are important in mediating
cellular responses to extracellular signals. MEKK2 and
MEKK3 activate MEK5 (also called MKK5), which activates
extracellular signal-regulated kinase 5 (ERK5). The ERK5
cascade plays roles in promoting cell proliferation,
differentiation, neuronal survival, and neuroprotection.
MEKK3 plays an essential role in embryonic angiogenesis
and early heart development. MEKK2 and MEKK3 can also
activate the MAPKs, c-Jun N-terminal kinase (JNK) and
p38, through their respective MAPKKs.
Length = 263
Score = 52.9 bits (127), Expect = 5e-07
Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 31/164 (18%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
Q+LEGV +L+ + HRD+K NIL D S N + + DFG+S ++ S
Sbjct: 112 QILEGVEYLHSNMIVHRDIKGANILRD-SAGN----VKLGDFGASKRLQTICSSGTGMKS 166
Query: 1008 IELGGNVALMAPEVALA-TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 1066
+ G M+PEV G K+D W+ G E+ P+ ++E
Sbjct: 167 VT--GTPYWMSPEVISGEGYG-------RKADVWSVGCTVVEMLTEKPPW------AEFE 211
Query: 1067 VNAL----------PQLNTNVPEVMRRLVAKLLENDPSDRPSAE 1100
A PQL ++V R + + + RPSAE
Sbjct: 212 AMAAIFKIATQPTNPQLPSHVSPDARNFLRRTFVENAKKRPSAE 255
Score = 40.9 bits (96), Expect = 0.003
Identities = 45/196 (22%), Positives = 67/196 (34%), Gaps = 53/196 (27%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
Q+LEGV +L+ + HRD+K NIL D S N + + DFG+S ++ S
Sbjct: 112 QILEGVEYLHSNMIVHRDIKGANILRD-SAGN----VKLGDFGASKRLQTICSSGTGMKS 166
Query: 1529 IELGGNVALMAPEVALA-TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYW 1587
+ G M+PEV G K+D W+ G E+ P
Sbjct: 167 VT--GTPYWMSPEVISGEGYG-------RKADVWSVGCTVVEMLTEKPP----------- 206
Query: 1588 HRKWLWQHLVYSHSSTTPSTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRL 1647
W ++I PQL ++V R
Sbjct: 207 -----WAEF-------EAMAAIFKIATQ---------------PTNPQLPSHVSPDARNF 239
Query: 1648 VAKLLENDPSDRPSAE 1663
+ + + RPSAE
Sbjct: 240 LRRTFVENAKKRPSAE 255
>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases,
Discoidin Domain Receptors. Protein Tyrosine Kinase
(PTK) family; Discoidin Domain Receptor (DDR) subfamily;
catalytic (c) domain. The DDR subfamily consists of
homologs of mammalian DDR1, DDR2, and similar proteins.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR
subfamily members are receptor tyr kinases (RTKs)
containing an extracellular discoidin homology domain, a
transmembrane segment, an extended juxtamembrane region,
and an intracellular catalytic domain. The binding of the
ligand, collagen, to DDRs results in a slow but sustained
receptor activation. DDRs regulate cell adhesion,
proliferation, and extracellular matrix remodeling. They
have been linked to a variety of human cancers including
breast, colon, ovarian, brain, and lung. There is no
evidence showing that DDRs act as transforming oncogenes.
They are more likely to play a role in the regulation of
tumor growth and metastasis.
Length = 296
Score = 53.1 bits (128), Expect = 5e-07
Identities = 56/206 (27%), Positives = 81/206 (39%), Gaps = 52/206 (25%)
Query: 923 NTDLRNYLRER--------CAQLSMHERILLF--TQLLEGVTHLNMHRTAHRDLKSDNIL 972
N DL +L++ C S+ LL+ TQ+ G+ +L HRDL + N L
Sbjct: 103 NGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATRNCL 162
Query: 973 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL----MAPEVALATPGL 1028
+ + + I DFG S YSS + G L MA E L G
Sbjct: 163 VGKNY-----TIKIADFGMS-------RNLYSSDYYRVQGRAPLPIRWMAWESVLL--GK 208
Query: 1029 FSFVNYSKSDAWTAGTVAYEI--FGHDNPFYQSARNTDYEV--NA------------LPQ 1072
F+ +KSD W G +EI + P+ TD +V NA LP+
Sbjct: 209 FT----TKSDVWAFGVTLWEILTLCREQPYEHL---TDQQVIENAGHFFRDDGRQIYLPR 261
Query: 1073 LNTNVPEVMRRLVAKLLENDPSDRPS 1098
N P+ + L+ + D DRP+
Sbjct: 262 -PPNCPKDIYELMLECWRRDEEDRPT 286
Score = 47.3 bits (113), Expect = 4e-05
Identities = 41/142 (28%), Positives = 57/142 (40%), Gaps = 32/142 (22%)
Query: 1444 NTDLRNYLRER--------CAQLSMHERILLF--TQLLEGVTHLNMHRTAHRDLKSDNIL 1493
N DL +L++ C S+ LL+ TQ+ G+ +L HRDL + N L
Sbjct: 103 NGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATRNCL 162
Query: 1494 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL----MAPEVALATPGL 1549
+ + + I DFG S YSS + G L MA E L G
Sbjct: 163 VGKNY-----TIKIADFGMS-------RNLYSSDYYRVQGRAPLPIRWMAWESVLL--GK 208
Query: 1550 FSFVNYSKSDAWTAGTVAYEIF 1571
F+ +KSD W G +EI
Sbjct: 209 FT----TKSDVWAFGVTLWEIL 226
Score = 33.1 bits (76), Expect = 1.1
Identities = 38/133 (28%), Positives = 51/133 (38%), Gaps = 37/133 (27%)
Query: 221 ITDFGSSYTNKSGLSMQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWT 276
I DFG S YSS + G L MA E L G F+ +KSD W
Sbjct: 171 IADFGMS-------RNLYSSDYYRVQGRAPLPIRWMAWESVLL--GKFT----TKSDVWA 217
Query: 277 AGTVAYEI--FGHDNPFYQSARNTDYEV--NA------------LPQLNTNVPEVMRRLV 320
G +EI + P+ TD +V NA LP+ N P+ + L+
Sbjct: 218 FGVTLWEILTLCREQPYEHL---TDQQVIENAGHFFRDDGRQIYLPR-PPNCPKDIYELM 273
Query: 321 AKLLENDPSDRPS 333
+ D DRP+
Sbjct: 274 LECWRRDEEDRPT 286
Score = 33.1 bits (76), Expect = 1.1
Identities = 38/133 (28%), Positives = 51/133 (38%), Gaps = 37/133 (27%)
Query: 662 ITDFGSSYTNKSGLSMQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWT 717
I DFG S YSS + G L MA E L G F+ +KSD W
Sbjct: 171 IADFGMS-------RNLYSSDYYRVQGRAPLPIRWMAWESVLL--GKFT----TKSDVWA 217
Query: 718 AGTVAYEI--FGHDNPFYQSARNTDYEV--NA------------LPQLNTNVPEVMRRLV 761
G +EI + P+ TD +V NA LP+ N P+ + L+
Sbjct: 218 FGVTLWEILTLCREQPYEHL---TDQQVIENAGHFFRDDGRQIYLPR-PPNCPKDIYELM 273
Query: 762 AKLLENDPSDRPS 774
+ D DRP+
Sbjct: 274 LECWRRDEEDRPT 286
>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional.
Length = 391
Score = 53.5 bits (128), Expect = 7e-07
Identities = 63/255 (24%), Positives = 114/255 (44%), Gaps = 38/255 (14%)
Query: 1421 PARLNPTGGYGRNMSLFILMKKYNTDLRNYLRER-----CAQLSMHERILLFTQLLEGVT 1475
P+ + G + N +++ +Y TDL YL + C L++ +L +
Sbjct: 143 PSIIQLKGTFTYNKFTCLILPRYKTDLYCYLAAKRNIAICDILAIERSVL------RAIQ 196
Query: 1476 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS-YTNKSGLSMQYSSADIELGGN 1534
+L+ +R HRD+K++NI ++ D + + DFG++ + + Y A G
Sbjct: 197 YLHENRIIHRDIKAENIFINHPGD-----VCLGDFGAACFPVDINANKYYGWA-----GT 246
Query: 1535 VALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEI-FGHDNPFYQSARNTDYWHRKWL 1592
+A APE+ P Y + D W+AG V +E+ HD+ F + + D + +
Sbjct: 247 IATNAPELLARDP-------YGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQI 299
Query: 1593 WQHLVYSHSSTTPSTVAYEIFGH-DNPFYQSARNTDYEVNALPQLNTNVPEV---MRRLV 1648
L+ S T P+ + + D + A+ + + + P L TN+ E+ + L+
Sbjct: 300 --KLIIRRSGTHPNEFPIDAQANLDEIYIGLAKKSSRKPGSRP-LWTNLYELPIDLEYLI 356
Query: 1649 AKLLENDPSDRPSAE 1663
K+L D RPSAE
Sbjct: 357 CKMLAFDAHHRPSAE 371
Score = 46.5 bits (110), Expect = 1e-04
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 31/165 (18%)
Query: 900 PARLNPTGGYGRNMSLFILMKKYNTDLRNYLRER-----CAQLSMHERILLFTQLLEGVT 954
P+ + G + N +++ +Y TDL YL + C L++ +L +
Sbjct: 143 PSIIQLKGTFTYNKFTCLILPRYKTDLYCYLAAKRNIAICDILAIERSVL------RAIQ 196
Query: 955 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS-YTNKSGLSMQYSSADIELGGN 1013
+L+ +R HRD+K++NI ++ D + + DFG++ + + Y A G
Sbjct: 197 YLHENRIIHRDIKAENIFINHPGD-----VCLGDFGAACFPVDINANKYYGWA-----GT 246
Query: 1014 VALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEI-FGHDNPF 1056
+A APE+ P Y + D W+AG V +E+ HD+ F
Sbjct: 247 IATNAPELLARDP-------YGPAVDIWSAGIVLFEMATCHDSLF 284
>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine
Kinase, Thousand-and-one amino acids proteins.
Serine/threonine kinases (STKs), thousand-and-one amino
acids (TAO) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. They activate the MAPKs, p38 and c-Jun
N-terminal kinase (JNK), by phosphorylating and
activating the respective MAP/ERK kinases (MEKs, also
known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK
signaling cascades are important in mediating cellular
responses to extracellular signals. Vertebrates contain
three TAO subfamily members, named TAO1, TAO2, and TAO3.
Length = 307
Score = 52.5 bits (126), Expect = 8e-07
Identities = 50/158 (31%), Positives = 71/158 (44%), Gaps = 23/158 (14%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
L+G+ +L+ H HRD+K+ NILL +E T + + DFGS+ S
Sbjct: 123 GALQGLAYLHSHERIHRDIKAGNILL--TEPGT---VKLADFGSASLVSPANSFV----- 172
Query: 1008 IELGGNVALMAPEVALAT-PGLFSFVNYSKSDAWTAGTVAYEIFGHDNP-FYQSARNTDY 1065
G MAPEV LA G + K D W+ G E+ P F +A + Y
Sbjct: 173 ----GTPYWMAPEVILAMDEGQYD----GKVDVWSLGITCIELAERKPPLFNMNAMSALY 224
Query: 1066 EV--NALPQLNTN-VPEVMRRLVAKLLENDPSDRPSAE 1100
+ N P L++N + R V L+ P DRPS+E
Sbjct: 225 HIAQNDSPTLSSNDWSDYFRNFVDSCLQKIPQDRPSSE 262
Score = 41.7 bits (98), Expect = 0.003
Identities = 50/196 (25%), Positives = 71/196 (36%), Gaps = 57/196 (29%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
L+G+ +L+ H HRD+K+ NILL +E T + + DFGS+ S
Sbjct: 123 GALQGLAYLHSHERIHRDIKAGNILL--TEPGT---VKLADFGSASLVSPANSFV----- 172
Query: 1529 IELGGNVALMAPEVALAT-PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYW 1587
G MAPEV LA G + K D W+ G E+ P +
Sbjct: 173 ----GTPYWMAPEVILAMDEGQYD----GKVDVWSLGITCIELAERKPPLF--------- 215
Query: 1588 HRKWLWQHLVYSHSSTTPSTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRL 1647
+ + Y I +D+P S +DY R
Sbjct: 216 --------------NMNAMSALYHIAQNDSPTLSSNDWSDY---------------FRNF 246
Query: 1648 VAKLLENDPSDRPSAE 1663
V L+ P DRPS+E
Sbjct: 247 VDSCLQKIPQDRPSSE 262
Score = 34.4 bits (79), Expect = 0.53
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 252 MAPEVALAT-PGLFSFVNYSKSDAWTAGTVAYEIFGHDNP-FYQSARNTDYEV--NALPQ 307
MAPEV LA G + K D W+ G E+ P F +A + Y + N P
Sbjct: 178 MAPEVILAMDEGQYD----GKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNDSPT 233
Query: 308 LNTN-VPEVMRRLVAKLLENDPSDRPSAE 335
L++N + R V L+ P DRPS+E
Sbjct: 234 LSSNDWSDYFRNFVDSCLQKIPQDRPSSE 262
Score = 34.4 bits (79), Expect = 0.53
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 693 MAPEVALAT-PGLFSFVNYSKSDAWTAGTVAYEIFGHDNP-FYQSARNTDYEV--NALPQ 748
MAPEV LA G + K D W+ G E+ P F +A + Y + N P
Sbjct: 178 MAPEVILAMDEGQYD----GKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNDSPT 233
Query: 749 LNTN-VPEVMRRLVAKLLENDPSDRPSAE 776
L++N + R V L+ P DRPS+E
Sbjct: 234 LSSNDWSDYFRNFVDSCLQKIPQDRPSSE 262
>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, N-terminal
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MSK subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MSKs contain an
N-terminal kinase domain (NTD) from the AGC family and a
C-terminal kinase domain (CTD) from the CAMK family,
similar to 90 kDa ribosomal protein S6 kinases (RSKs).
MSKs are activated by two major signaling cascades, the
Ras-MAPK and p38 stress kinase pathways, in response to
various stimuli such as growth factors, hormones,
neurotransmitters, cellular stress, and pro-inflammatory
cytokines. This triggers phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) in the
C-terminal extension of NTD, which facilitates the
phosphorylation of the A-loop and activates the NTD,
which in turn phosphorylates downstream targets. MSKs are
predominantly nuclear proteins. They are widely expressed
in many tissues including heart, brain, lung, liver,
kidney, and pancreas. There are two isoforms of MSK,
called MSK1 and MSK2.
Length = 288
Score = 52.5 bits (126), Expect = 9e-07
Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 38/182 (20%)
Query: 927 RNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVI 986
R + E ++ + E +L + HL+ +RD+K +NILLD + +V+
Sbjct: 99 REHFTESEVRVYIAEIVL-------ALDHLHQLGIIYRDIKLENILLD--SEG---HVVL 146
Query: 987 TDFGSSYTNKSGLSMQYSSADIELG----GNVALMAPEVALATPGLFSFVNYSKS-DAWT 1041
TDF GLS ++ + + E G + MAPEV G + K+ D W+
Sbjct: 147 TDF--------GLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSG-----GHDKAVDWWS 193
Query: 1042 AGTVAYEIFGHDNPF-YQSARNTDYEV------NALPQLNTNVPEVMRRLVAKLLENDPS 1094
G + +E+ +PF +N+ E+ + P T E R + KLLE DP
Sbjct: 194 LGVLTFELLTGASPFTVDGEQNSQSEISRRILKSKPPFPKTMSAEA-RDFIQKLLEKDPK 252
Query: 1095 DR 1096
R
Sbjct: 253 KR 254
Score = 42.9 bits (101), Expect = 0.001
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 30/135 (22%)
Query: 1448 RNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVI 1507
R + E ++ + E +L + HL+ +RD+K +NILLD + +V+
Sbjct: 99 REHFTESEVRVYIAEIVL-------ALDHLHQLGIIYRDIKLENILLD--SEG---HVVL 146
Query: 1508 TDFGSSYTNKSGLSMQYSSADIELG----GNVALMAPEVALATPGLFSFVNYSKS-DAWT 1562
TDF GLS ++ + + E G + MAPEV G + K+ D W+
Sbjct: 147 TDF--------GLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSG-----GHDKAVDWWS 193
Query: 1563 AGTVAYEIFGHDNPF 1577
G + +E+ +PF
Sbjct: 194 LGVLTFELLTGASPF 208
Score = 38.2 bits (89), Expect = 0.028
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 26/125 (20%)
Query: 219 LVITDFGSSYTNKSGLSMQYSSADIELG----GNVALMAPEVALATPGLFSFVNYSKS-D 273
+V+TDFG LS ++ + + E G + MAPEV G + K+ D
Sbjct: 144 VVLTDFG--------LSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSG-----GHDKAVD 190
Query: 274 AWTAGTVAYEIFGHDNPF-YQSARNTDYEV------NALPQLNTNVPEVMRRLVAKLLEN 326
W+ G + +E+ +PF +N+ E+ + P T E R + KLLE
Sbjct: 191 WWSLGVLTFELLTGASPFTVDGEQNSQSEISRRILKSKPPFPKTMSAEA-RDFIQKLLEK 249
Query: 327 DPSDR 331
DP R
Sbjct: 250 DPKKR 254
Score = 38.2 bits (89), Expect = 0.028
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 26/125 (20%)
Query: 660 LVITDFGSSYTNKSGLSMQYSSADIELG----GNVALMAPEVALATPGLFSFVNYSKS-D 714
+V+TDFG LS ++ + + E G + MAPEV G + K+ D
Sbjct: 144 VVLTDFG--------LSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSG-----GHDKAVD 190
Query: 715 AWTAGTVAYEIFGHDNPF-YQSARNTDYEV------NALPQLNTNVPEVMRRLVAKLLEN 767
W+ G + +E+ +PF +N+ E+ + P T E R + KLLE
Sbjct: 191 WWSLGVLTFELLTGASPFTVDGEQNSQSEISRRILKSKPPFPKTMSAEA-RDFIQKLLEK 249
Query: 768 DPSDR 772
DP R
Sbjct: 250 DPKKR 254
>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine
Kinase, Thousand-and-one amino acids 3. Serine/threonine
kinases (STKs), thousand-and-one amino acids 3 (TAO3)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The TAO
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
TAO3 is also known as JIK (JNK inhibitory kinase) or KFC
(kinase from chicken). It specifically activates c-Jun
N-terminal kinase (JNK), presumably by phosphorylating
and activating MKK4/MKK7. In Saccharomyces cerevisiae,
TAO3 is a component of the RAM (regulation of Ace2p
activity and cellular morphogenesis) signaling pathway.
TAO3 is upregulated in retinal ganglion cells after
axotomy, and may play a role in apoptosis.
Length = 313
Score = 52.3 bits (125), Expect = 1e-06
Identities = 53/159 (33%), Positives = 72/159 (45%), Gaps = 26/159 (16%)
Query: 950 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP-QLVITDFGSSYTNKSGLSMQYSSADI 1008
L+G+ +L+ H HRD+K+ NILL T P Q+ + DFGS+ SS
Sbjct: 131 LQGLAYLHSHNMIHRDIKAGNILL------TEPGQVKLADFGSA---------SKSSPAN 175
Query: 1009 ELGGNVALMAPEVALAT-PGLFSFVNYSKSDAWTAGTVAYEIFGHDNP-FYQSARNTDYE 1066
G MAPEV LA G + K D W+ G E+ P F +A + Y
Sbjct: 176 SFVGTPYWMAPEVILAMDEGQYD----GKVDVWSLGITCIELAERKPPLFNMNAMSALYH 231
Query: 1067 V--NALPQLNTNV-PEVMRRLVAKLLENDPSDRP-SAEL 1101
+ N P L +N + R V L+ P +RP SAEL
Sbjct: 232 IAQNDSPTLQSNEWTDSFRGFVDYCLQKIPQERPASAEL 270
Score = 43.9 bits (103), Expect = 5e-04
Identities = 54/197 (27%), Positives = 73/197 (37%), Gaps = 60/197 (30%)
Query: 1471 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP-QLVITDFGSSYTNKSGLSMQYSSADI 1529
L+G+ +L+ H HRD+K+ NILL T P Q+ + DFGS+ SS
Sbjct: 131 LQGLAYLHSHNMIHRDIKAGNILL------TEPGQVKLADFGSA---------SKSSPAN 175
Query: 1530 ELGGNVALMAPEVALAT-PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYWH 1588
G MAPEV LA G + K D W+ G E+ P +
Sbjct: 176 SFVGTPYWMAPEVILAMDEGQYD----GKVDVWSLGITCIELAERKPPLF---------- 221
Query: 1589 RKWLWQHLVYSHSSTTPSTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLV 1648
+ + Y I +D+P QS TD R V
Sbjct: 222 -------------NMNAMSALYHIAQNDSPTLQSNEWTD---------------SFRGFV 253
Query: 1649 AKLLENDPSDRP-SAEL 1664
L+ P +RP SAEL
Sbjct: 254 DYCLQKIPQERPASAEL 270
>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR
kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Rho-associated
coiled-coil containing protein kinase (ROCK) and Nuclear
Dbf2-Related (NDR)-like kinase subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK- and NDR-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily include ROCK and
ROCK-like proteins such as DMPK, MRCK, and CRIK, as well
as NDR and NDR-like proteins such as LATS, CBK1 and
Sid2p. ROCK and CRIK are effectors of the small GTPase
Rho, while MRCK is an effector of the small GTPase Cdc42.
NDR and NDR-like kinases contain an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Proteins in
this subfamily are involved in regulating many cellular
functions including contraction, motility, division,
proliferation, apoptosis, morphogenesis, and cytokinesis.
Length = 350
Score = 51.9 bits (125), Expect = 1e-06
Identities = 32/125 (25%), Positives = 42/125 (33%), Gaps = 37/125 (29%)
Query: 963 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYT-NKSGLSMQYSSADIELG---------- 1011
HRD+K DNIL+D + + DFG NK+ Y + L
Sbjct: 124 HRDIKPDNILID-----ADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRR 178
Query: 1012 -------------GNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFY 1057
G +APEV TP Y D W+ G + YE+ PFY
Sbjct: 179 DHKQRRVRANSTVGTPDYIAPEVLRGTP-------YGLECDWWSLGVILYEMLYGFPPFY 231
Query: 1058 QSARN 1062
Sbjct: 232 SDTLQ 236
Score = 51.9 bits (125), Expect = 1e-06
Identities = 32/125 (25%), Positives = 42/125 (33%), Gaps = 37/125 (29%)
Query: 1484 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYT-NKSGLSMQYSSADIELG---------- 1532
HRD+K DNIL+D + + DFG NK+ Y + L
Sbjct: 124 HRDIKPDNILID-----ADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRR 178
Query: 1533 -------------GNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFY 1578
G +APEV TP Y D W+ G + YE+ PFY
Sbjct: 179 DHKQRRVRANSTVGTPDYIAPEVLRGTP-------YGLECDWWSLGVILYEMLYGFPPFY 231
Query: 1579 QSARN 1583
Sbjct: 232 SDTLQ 236
Score = 34.6 bits (80), Expect = 0.51
Identities = 23/102 (22%), Positives = 30/102 (29%), Gaps = 32/102 (31%)
Query: 221 ITDFGSSYT-NKSGLSMQYSSADIELG-----------------------GNVALMAPEV 256
+ DFG NK+ Y + L G +APEV
Sbjct: 142 LADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEV 201
Query: 257 ALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARN 297
TP Y D W+ G + YE+ PFY
Sbjct: 202 LRGTP-------YGLECDWWSLGVILYEMLYGFPPFYSDTLQ 236
Score = 34.6 bits (80), Expect = 0.51
Identities = 23/102 (22%), Positives = 30/102 (29%), Gaps = 32/102 (31%)
Query: 662 ITDFGSSYT-NKSGLSMQYSSADIELG-----------------------GNVALMAPEV 697
+ DFG NK+ Y + L G +APEV
Sbjct: 142 LADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEV 201
Query: 698 ALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARN 738
TP Y D W+ G + YE+ PFY
Sbjct: 202 LRGTP-------YGLECDWWSLGVILYEMLYGFPPFYSDTLQ 236
>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like
Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK)
family; Human Fyn-related kinase (Frk) and similar
proteins; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Frk and Srk are members
of the Src subfamily of proteins, which are cytoplasmic
(or non-receptor) tyr kinases. Src kinases contain an
N-terminal SH4 domain with a myristoylation site,
followed by SH3 and SH2 domains, a tyr kinase domain, and
a regulatory C-terminal region containing a conserved
tyr. They are activated by autophosphorylation at the tyr
kinase domain, but are negatively regulated by
phosphorylation at the C-terminal tyr by Csk (C-terminal
Src Kinase). Src proteins are involved in signaling
pathways that regulate cytokine and growth factor
responses, cytoskeleton dynamics, cell proliferation,
survival, and differentiation. Frk, also known as Rak, is
specifically expressed in liver, lung, kidney, intestine,
mammary glands, and the islets of Langerhans. Rodent
homologs were previously referred to as GTK
(gastrointestinal tyr kinase), BSK (beta-cell Src-like
kinase), or IYK (intestinal tyr kinase). Studies in mice
reveal that Frk is not essential for viability. It plays
a role in the signaling that leads to cytokine-induced
beta-cell death in Type I diabetes. It also regulates
beta-cell number during embryogenesis and early in life.
Length = 261
Score = 51.3 bits (123), Expect = 2e-06
Identities = 51/198 (25%), Positives = 76/198 (38%), Gaps = 42/198 (21%)
Query: 918 LMKKYNTDLRNYLR-ERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 976
LMK L YL+ L + + I + Q+ G+ +L HRDL + N+L+
Sbjct: 82 LMK--YGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHRDLAARNVLV--G 137
Query: 977 EDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 1029
E+N C + DFG Y + G + APE AL F
Sbjct: 138 ENNICK---VADFGLARVIKEDIYEAREGAKFP-----------IKWTAPEAALYNR--F 181
Query: 1030 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNA-------LPQLNTNVPEVMR 1082
S KSD W+ G + EI + Y T+ EV +P P+ +
Sbjct: 182 SI----KSDVWSFGILLTEIVTYGRMPY--PGMTNAEVLQQVDQGYRMPC-PPGCPKELY 234
Query: 1083 RLVAKLLENDPSDRPSAE 1100
++ + DP DRP+ E
Sbjct: 235 DIMLDCWKEDPDDRPTFE 252
Score = 47.0 bits (112), Expect = 4e-05
Identities = 39/143 (27%), Positives = 56/143 (39%), Gaps = 32/143 (22%)
Query: 1439 LMKKYNTDLRNYLR-ERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 1497
LMK L YL+ L + + I + Q+ G+ +L HRDL + N+L+
Sbjct: 82 LMK--YGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHRDLAARNVLV--G 137
Query: 1498 EDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 1550
E+N C + DFG Y + G + APE AL F
Sbjct: 138 ENNICK---VADFGLARVIKEDIYEAREGAKFP-----------IKWTAPEAALYNR--F 181
Query: 1551 SFVNYSKSDAWTAGTVAYEIFGH 1573
S KSD W+ G + EI +
Sbjct: 182 SI----KSDVWSFGILLTEIVTY 200
>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-1 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-1 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-1 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-1 is
expressed ubiquitously and is localized in the cytoplasm.
Its kinase activity is cell cycle dependent and peaks at
the S and G2 phases. PCTAIRE-1 is highly expressed in the
brain and may play a role in regulating neurite
outgrowth. It can also associate with Trap (Tudor repeat
associator with PCTAIRE-2), a physiological partner of
PCTAIRE-2; with p11, a small dimeric protein with
similarity to S100; and with 14-3-3 proteins, mediators
of phosphorylation-dependent interactions in many
different proteins.
Length = 301
Score = 51.5 bits (123), Expect = 2e-06
Identities = 62/242 (25%), Positives = 108/242 (44%), Gaps = 47/242 (19%)
Query: 1435 SLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL 1494
SL ++ + + DL+ YL + ++MH L QLL G+ + + + HRDLK N+L+
Sbjct: 78 SLTLVFEYLDKDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLI 137
Query: 1495 DCSEDNTCPQLVITDFG---------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALA 1545
N +L + DFG +Y+N+ +++ Y DI LG
Sbjct: 138 -----NERGELKLADFGLARAKSIPTKTYSNEV-VTLWYRPPDILLGST----------- 180
Query: 1546 TPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYWHRKWLWQHLVYSHSSTT 1604
+YS D W G + YE+ P + + + H ++++ L T
Sbjct: 181 --------DYSTQIDMWGVGCIFYEM-STGRPLFPGSTVEEQLH--FIFRILGTPTEETW 229
Query: 1605 PSTVAYEIF-GHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 1663
P ++ E F ++ P Y++ D N P+L+++ E L++KLL+ + R SAE
Sbjct: 230 PGILSNEEFKSYNYPKYRA----DCLHNHAPRLDSDGAE----LLSKLLQFEGRKRISAE 281
Query: 1664 LA 1665
A
Sbjct: 282 EA 283
Score = 47.7 bits (113), Expect = 3e-05
Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 45/220 (20%)
Query: 914 SLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL 973
SL ++ + + DL+ YL + ++MH L QLL G+ + + + HRDLK N+L+
Sbjct: 78 SLTLVFEYLDKDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLI 137
Query: 974 DCSEDNTCPQLVITDFG---------SSYTNKSGLSMQYSSADIELGGN----------V 1014
N +L + DFG +Y+N+ +++ Y DI LG V
Sbjct: 138 -----NERGELKLADFGLARAKSIPTKTYSNEV-VTLWYRPPDILLGSTDYSTQIDMWGV 191
Query: 1015 ALMAPEVALATP------------GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARN 1062
+ E++ P +F + + W E ++ P Y++
Sbjct: 192 GCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKSYNYPKYRA--- 248
Query: 1063 TDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 1102
D N P+L+++ E L++KLL+ + R SAE A
Sbjct: 249 -DCLHNHAPRLDSDGAE----LLSKLLQFEGRKRISAEEA 283
>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase,
Csk homologous kinase. Protein Tyrosine Kinase (PTK)
family; Csk homologous kinase (Chk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases such
as protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and SH2,
N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. Chk is also referred to
as megakaryocyte-associated tyrosine kinase (Matk). To
inhibit Src kinases, Chk is translocated to the membrane
via binding to specific transmembrane proteins,
G-proteins, or adaptor proteins near the membrane. Chk
inhibit Src kinases using a noncatalytic mechanism by
simply binding to them. As a negative regulator of Src
kinases, Chk may play important roles in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression. Chk
is expressed in brain and hematopoietic cells. Studies in
mice reveal that Chk is not functionally redundant with
Csk and that it plays an important role as a regulator of
immune responses. Chk also plays a role in neural
differentiation in a manner independent of Src by
enhancing Mapk activation via Ras-mediated signaling.
Length = 254
Score = 51.1 bits (122), Expect = 2e-06
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 21/140 (15%)
Query: 915 LFILMKKYNT-DLRNYLRERCAQLSMHERILLFT-QLLEGVTHLNMHRTAHRDLKSDNIL 972
L+I+M+ + +L N+LR R L ++L F+ + EG+ +L + HRDL + NIL
Sbjct: 73 LYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAARNIL 132
Query: 973 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV 1032
+ SED ++DFG + G+ V APE AL FS
Sbjct: 133 V--SEDGVAK---VSDFGLARVGSMGVDNSKLP--------VKWTAPE-ALKH-KKFS-- 175
Query: 1033 NYSKSDAWTAGTVAYEIFGH 1052
SKSD W+ G + +E+F +
Sbjct: 176 --SKSDVWSYGVLLWEVFSY 193
Score = 51.1 bits (122), Expect = 2e-06
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 21/140 (15%)
Query: 1436 LFILMKKYNT-DLRNYLRERCAQLSMHERILLFT-QLLEGVTHLNMHRTAHRDLKSDNIL 1493
L+I+M+ + +L N+LR R L ++L F+ + EG+ +L + HRDL + NIL
Sbjct: 73 LYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAARNIL 132
Query: 1494 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV 1553
+ SED ++DFG + G+ V APE AL FS
Sbjct: 133 V--SEDGVAK---VSDFGLARVGSMGVDNSKLP--------VKWTAPE-ALKH-KKFS-- 175
Query: 1554 NYSKSDAWTAGTVAYEIFGH 1573
SKSD W+ G + +E+F +
Sbjct: 176 --SKSDVWSYGVLLWEVFSY 193
>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like
protein kinase 3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), mammalian Ste20-like
protein kinase 3 (MST3)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST3-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. This
subfamily is composed of MST3, MST4, STK25,
Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces
cerevisiae sporulation-specific protein 1 (SPS1), and
related proteins. Nak1 is required by fission yeast for
polarizing the tips of actin cytoskeleton and is involved
in cell growth, cell separation, cell morphology and
cell-cycle progression. Sid1 is a component in the
septation initiation network (SIN) signaling pathway, and
plays a role in cytokinesis. SPS1 plays a role in
regulating proteins required for spore wall formation.
MST4 plays a role in mitogen-activated protein kinase
(MAPK) signaling during cytoskeletal rearrangement,
morphogenesis, and apoptosis. MST3 phosphorylates the STK
NDR and may play a role in cell cycle progression and
cell morphology. STK25 may play a role in the regulation
of cell migration and polarization.
Length = 274
Score = 51.1 bits (123), Expect = 2e-06
Identities = 54/209 (25%), Positives = 86/209 (41%), Gaps = 43/209 (20%)
Query: 907 GGYGRNMSLFILMKKY--NTDLRNYLRERCAQLSMHERILLFT--QLLEGVTHLNMHRTA 962
G + + L+I+M+ Y + L+ + E + F ++L G+ +L+
Sbjct: 66 GSFLKGSKLWIIME-YCGGGSCLDLLKPG----KLDETYIAFILREVLLGLEYLHEEGKI 120
Query: 963 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA 1022
HRD+K+ NILL SE+ + + DFG S L+ S + G MAPEV
Sbjct: 121 HRDIKAANILL--SEEG---DVKLADFGVS----GQLTSTMSKRN-TFVGTPFWMAPEVI 170
Query: 1023 LATPGLFSFVNY-SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV---------NALPQ 1072
+ Y K+D W+ G A E+ + P +D N P
Sbjct: 171 KQS-------GYDEKADIWSLGITAIELAKGEPP------LSDLHPMRVLFLIPKNNPPS 217
Query: 1073 LNTNV-PEVMRRLVAKLLENDPSDRPSAE 1100
L N + + V+ L DP +RPSA+
Sbjct: 218 LEGNKFSKPFKDFVSLCLNKDPKERPSAK 246
Score = 44.1 bits (105), Expect = 3e-04
Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 27/149 (18%)
Query: 1428 GGYGRNMSLFILMKKY--NTDLRNYLRERCAQLSMHERILLFT--QLLEGVTHLNMHRTA 1483
G + + L+I+M+ Y + L+ + E + F ++L G+ +L+
Sbjct: 66 GSFLKGSKLWIIME-YCGGGSCLDLLKPG----KLDETYIAFILREVLLGLEYLHEEGKI 120
Query: 1484 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA 1543
HRD+K+ NILL SE+ + + DFG S L+ S + G MAPEV
Sbjct: 121 HRDIKAANILL--SEEG---DVKLADFGVS----GQLTSTMSKRN-TFVGTPFWMAPEVI 170
Query: 1544 LATPGLFSFVNY-SKSDAWTAGTVAYEIF 1571
+ Y K+D W+ G A E+
Sbjct: 171 KQS-------GYDEKADIWSLGITAIELA 192
Score = 32.6 bits (75), Expect = 1.5
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 24/95 (25%)
Query: 252 MAPEVALATPGLFSFVNY-SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV-------- 302
MAPEV + Y K+D W+ G A E+ + P +D
Sbjct: 165 MAPEVIKQS-------GYDEKADIWSLGITAIELAKGEPP------LSDLHPMRVLFLIP 211
Query: 303 -NALPQLNTNV-PEVMRRLVAKLLENDPSDRPSAE 335
N P L N + + V+ L DP +RPSA+
Sbjct: 212 KNNPPSLEGNKFSKPFKDFVSLCLNKDPKERPSAK 246
Score = 32.6 bits (75), Expect = 1.5
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 24/95 (25%)
Query: 693 MAPEVALATPGLFSFVNY-SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV-------- 743
MAPEV + Y K+D W+ G A E+ + P +D
Sbjct: 165 MAPEVIKQS-------GYDEKADIWSLGITAIELAKGEPP------LSDLHPMRVLFLIP 211
Query: 744 -NALPQLNTNV-PEVMRRLVAKLLENDPSDRPSAE 776
N P L N + + V+ L DP +RPSA+
Sbjct: 212 KNNPPSLEGNKFSKPFKDFVSLCLNKDPKERPSAK 246
>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine
Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic
(c) domain (repeat 2). The PTKc family is part of a
larger superfamily that includes the catalytic domains of
other kinases such as protein serine/threonine kinases,
RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Tyk2 is a member of the Janus kinase (Jak) subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal FERM domain, followed by
a Src homology 2 (SH2) domain, a pseudokinase domain, and
a C-terminal tyr kinase catalytic domain. Jaks are
crucial for cytokine receptor signaling. They are
activated by autophosphorylation upon cytokine-induced
receptor aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs). Tyk2
is widely expressed in many tissues. It is involved in
signaling via the cytokine receptors IFN-alphabeta, IL-6,
IL-10, IL-12, IL-13, and IL-23. It mediates cell surface
urokinase receptor (uPAR) signaling and plays a role in
modulating vascular smooth muscle cell (VSMC) functional
behavior in response to injury. Tyk2 is also important in
dendritic cell function and T helper (Th)1 cell
differentiation. A homozygous mutation of Tyk2 was found
in a patient with hyper-IgE syndrome (HIES), a primary
immunodeficiency characterized by recurrent skin
abscesses, pneumonia, and elevated serum IgE. This
suggests that Tyk2 may play important roles in multiple
cytokine signaling involved in innate and adaptive
immunity.
Length = 283
Score = 51.1 bits (122), Expect = 2e-06
Identities = 45/195 (23%), Positives = 72/195 (36%), Gaps = 37/195 (18%)
Query: 926 LRNYLRERCAQLSMHERILLFTQ-LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 984
LR+YL + L+ ++LLF Q + EG+ +L+ HRDL + N+LLD D +
Sbjct: 95 LRDYLPKHKLNLA---QLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLD--NDRL---V 146
Query: 985 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGT 1044
I DFG + G D + +P A L SD W+ G
Sbjct: 147 KIGDFGLAKAVPEGHEYYRVREDGD--------SPVFWYAVECLKENKFSYASDVWSFGV 198
Query: 1045 VAYEIFGHDNPFYQSARN--------TDYEVNALPQLN-----------TNVPEVMRRLV 1085
YE+ H + QS ++ + + N P+ + L+
Sbjct: 199 TLYELLTHCDS-KQSPPKKFEEMIGPKQGQMTVVRLIELLERGMRLPCPKNCPQEVYILM 257
Query: 1086 AKLLENDPSDRPSAE 1100
E + RP+
Sbjct: 258 KNCWETEAKFRPTFR 272
Score = 48.0 bits (114), Expect = 2e-05
Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 18/137 (13%)
Query: 1447 LRNYLRERCAQLSMHERILLFTQ-LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 1505
LR+YL + L+ ++LLF Q + EG+ +L+ HRDL + N+LLD D +
Sbjct: 95 LRDYLPKHKLNLA---QLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLD--NDRL---V 146
Query: 1506 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGT 1565
I DFG + G D + +P A L SD W+ G
Sbjct: 147 KIGDFGLAKAVPEGHEYYRVREDGD--------SPVFWYAVECLKENKFSYASDVWSFGV 198
Query: 1566 VAYEIFGHDNPFYQSAR 1582
YE+ H + QS
Sbjct: 199 TLYELLTHCDS-KQSPP 214
>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine
Kinases, Bruton's tyrosine kinase and Bone marrow kinase
on the X chromosome. Protein Tyrosine Kinase (PTK)
family; Bruton's tyrosine kinase (Btk) and Bone marrow
kinase on the X chromosome (Bmx); catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Btk and
Bmx (also named Etk) are members of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, Btk
contains the Tec homology (TH) domain with proline-rich
and zinc-binding regions. Tec kinases are expressed
mainly by haematopoietic cells. Btk is expressed in
B-cells, and a variety of myeloid cells including mast
cells, platelets, neutrophils, and dendrictic cells. It
interacts with a variety of partners, from cytosolic
proteins to nuclear transcription factors, suggesting a
diversity of functions. Stimulation of a diverse array of
cell surface receptors, including antigen engagement of
the B-cell receptor (BCR), leads to PH-mediated membrane
translocation of Btk and subsequent phosphorylation by
Src kinase and activation. Btk plays an important role in
the life cycle of B-cells including their development,
differentiation, proliferation, survival, and apoptosis.
Mutations in Btk cause the primary immunodeficiency
disease, X-linked agammaglobulinaemia (XLA) in humans.
Bmx is primarily expressed in bone marrow and the
arterial endothelium, and plays an important role in
ischemia-induced angiogenesis. It facilitates arterial
growth, capillary formation, vessel maturation, and bone
marrow-derived endothelial progenitor cell mobilization.
Length = 256
Score = 50.6 bits (121), Expect = 2e-06
Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 21/131 (16%)
Query: 923 NTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 982
N L NYLRE + + + + + EG+ +L + HRDL + N L+D D C
Sbjct: 83 NGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLAARNCLVD---DQGCV 139
Query: 983 QLVITDFG-SSYTNKSGLSMQYSSADIELGGN--VALMAPEVALATPGLFSFVNYSKSDA 1039
+ ++DFG S Y L +Y+S+ +G V PEV L + FS SKSD
Sbjct: 140 K--VSDFGLSRYV----LDDEYTSS---VGSKFPVRWSPPEVLLYSK--FS----SKSDV 184
Query: 1040 WTAGTVAYEIF 1050
W G + +E++
Sbjct: 185 WAFGVLMWEVY 195
Score = 50.6 bits (121), Expect = 2e-06
Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 21/131 (16%)
Query: 1444 NTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 1503
N L NYLRE + + + + + EG+ +L + HRDL + N L+D D C
Sbjct: 83 NGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLAARNCLVD---DQGCV 139
Query: 1504 QLVITDFG-SSYTNKSGLSMQYSSADIELGGN--VALMAPEVALATPGLFSFVNYSKSDA 1560
+ ++DFG S Y L +Y+S+ +G V PEV L + FS SKSD
Sbjct: 140 K--VSDFGLSRYV----LDDEYTSS---VGSKFPVRWSPPEVLLYSK--FS----SKSDV 184
Query: 1561 WTAGTVAYEIF 1571
W G + +E++
Sbjct: 185 WAFGVLMWEVY 195
>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-3 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-3 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-3 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-3 shows a
restricted pattern of expression and is present in brain,
kidney, and intestine. It is elevated in Alzheimer's
disease (AD) and has been shown to associate with paired
helical filaments (PHFs) and stimulate Tau
phosphorylation. As AD progresses, phosphorylated Tau
aggregates and forms PHFs, which leads to the formation
of neurofibrillary tangles (NFTs). In human glioma cells,
PCTAIRE-3 induces cell cycle arrest and cell death.
Length = 288
Score = 50.8 bits (121), Expect = 2e-06
Identities = 62/234 (26%), Positives = 104/234 (44%), Gaps = 31/234 (13%)
Query: 1435 SLFILMKKYNTDLRNYLRERCAQL-SMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNIL 1493
L ++ + ++DL+ YL + C L SMH + QLL G+++ + + HRDLK N+L
Sbjct: 77 CLTLVFEYLDSDLKQYL-DNCGNLMSMHNVKIFMFQLLRGLSYCHKRKILHRDLKPQNLL 135
Query: 1494 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV 1553
+ N +L + DFG + KS + YS+ + L P+V L +
Sbjct: 136 I-----NEKGELKLADFGLARA-KSVPTKTYSNEVVTLW----YRPPDVLLGS------T 179
Query: 1554 NYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYWHRKWLWQHLVYSHSSTTPSTVAYEI 1612
YS D W G + YE+ P + + + H +++ L T P + E
Sbjct: 180 EYSTPIDMWGVGCILYEM-ATGRPMFPGSTVKEELH--LIFRLLGTPTEETWPGITSNEE 236
Query: 1613 F-GHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 1665
F + P Y+ +N P+L+T+ + L++ LL + R SAE A
Sbjct: 237 FRSYLFPQYR----AQPLINHAPRLDTDGID----LLSSLLLYETKSRISAEAA 282
Score = 49.6 bits (118), Expect = 7e-06
Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 47/221 (21%)
Query: 914 SLFILMKKYNTDLRNYLRERCAQL-SMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNIL 972
L ++ + ++DL+ YL + C L SMH + QLL G+++ + + HRDLK N+L
Sbjct: 77 CLTLVFEYLDSDLKQYL-DNCGNLMSMHNVKIFMFQLLRGLSYCHKRKILHRDLKPQNLL 135
Query: 973 LDCSEDNTCPQLVITDFG---------SSYTNKSGLSMQYSSADIELGGN---------- 1013
+ N +L + DFG +Y+N+ +++ Y D+ LG
Sbjct: 136 I-----NEKGELKLADFGLARAKSVPTKTYSNEV-VTLWYRPPDVLLGSTEYSTPIDMWG 189
Query: 1014 VALMAPEVALATPG------------LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR 1061
V + E+A P +F + + W T E + P Y+
Sbjct: 190 VGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEETWPGITSNEEFRSYLFPQYR--- 246
Query: 1062 NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 1102
+N P+L+T+ + L++ LL + R SAE A
Sbjct: 247 -AQPLINHAPRLDTDGID----LLSSLLLYETKSRISAEAA 282
>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine
Kinases, Tyrosine kinase expressed in hepatocellular
carcinoma and Resting lymphocyte kinase. Protein
Tyrosine Kinase (PTK) family; Tyrosine kinase expressed
in hepatocellular carcinoma (Tec) and Resting lymphocyte
kinase (Rlk); catalytic (c) domain. The PTKc family is
part of a larger superfamily, that includes the catalytic
domains of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tec and Rlk (also named
Txk) are members of the Tec subfamily of proteins, which
are cytoplasmic (or nonreceptor) tyr kinases with
similarity to Src kinases in that they contain Src
homology protein interaction domains (SH3, SH2)
N-terminal to the catalytic tyr kinase domain. Unlike Src
kinases, most Tec subfamily members (except Rlk) also
contain an N-terminal pleckstrin homology (PH) domain,
which binds the products of PI3K and allows membrane
recruitment and activation. Instead of PH, Rlk contains
an N-terminal cysteine-rich region. In addition to PH,
Tec also contains the Tec homology (TH) domain with
proline-rich and zinc-binding regions. Tec kinases are
expressed mainly by haematopoietic cells. Tec is more
widely-expressed than other Tec subfamily kinases. It is
found in endothelial cells, both B- and T-cells, and a
variety of myeloid cells including mast cells, erythroid
cells, platelets, macrophages and neutrophils. Rlk is
expressed in T-cells and mast cell lines. Tec and Rlk are
both key components of T-cell receptor (TCR) signaling.
They are important in TCR-stimulated proliferation, IL-2
production and phopholipase C-gamma1 activation.
Length = 256
Score = 50.6 bits (121), Expect = 3e-06
Identities = 56/195 (28%), Positives = 89/195 (45%), Gaps = 40/195 (20%)
Query: 926 LRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 985
L NYLR+R +LS + + + EG+ +L + HRDL + N L+ ++ +
Sbjct: 86 LLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLAARNCLV-----SSTGVVK 140
Query: 986 ITDFGSSYTNKSGLSMQYSSADIELGGN--VALMAPEVALATPGLFSFVNY-SKSDAWTA 1042
++DFG + + L +Y+S+ G V PEV F+F Y SKSD W+
Sbjct: 141 VSDFGMT---RYVLDDEYTSSS---GAKFPVKWSPPEV-------FNFSKYSSKSDVWSF 187
Query: 1043 GTVAYEIFGHDN-PFYQSARNTDYEVNAL---------PQLNTN-VPEVMRRLVAKLLEN 1091
G + +E+F PF + ++YEV + P+L + V EVM
Sbjct: 188 GVLMWEVFTEGKMPF---EKKSNYEVVEMISRGFRLYRPKLASMTVYEVMYS----CWHE 240
Query: 1092 DPSDRPS-AELAATV 1105
P RP+ AEL +
Sbjct: 241 KPEGRPTFAELLRAI 255
Score = 46.8 bits (111), Expect = 5e-05
Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 21/128 (16%)
Query: 1447 LRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 1506
L NYLR+R +LS + + + EG+ +L + HRDL + N L+ ++ +
Sbjct: 86 LLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLAARNCLV-----SSTGVVK 140
Query: 1507 ITDFGSSYTNKSGLSMQYSSADIELGGN--VALMAPEVALATPGLFSFVNY-SKSDAWTA 1563
++DFG + + L +Y+S+ G V PEV F+F Y SKSD W+
Sbjct: 141 VSDFGMT---RYVLDDEYTSSS---GAKFPVKWSPPEV-------FNFSKYSSKSDVWSF 187
Query: 1564 GTVAYEIF 1571
G + +E+F
Sbjct: 188 GVLMWEVF 195
Score = 32.9 bits (75), Expect = 1.3
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 20/98 (20%)
Query: 256 VALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDN-PFYQSARNTDYEVNAL-------- 305
V + P +F+F YS KSD W+ G + +E+F PF + ++YEV +
Sbjct: 165 VKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPF---EKKSNYEVVEMISRGFRLY 221
Query: 306 -PQLNTN-VPEVMRRLVAKLLENDPSDRPS-AELAATV 340
P+L + V EVM P RP+ AEL +
Sbjct: 222 RPKLASMTVYEVMYS----CWHEKPEGRPTFAELLRAI 255
Score = 32.9 bits (75), Expect = 1.3
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 20/98 (20%)
Query: 697 VALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDN-PFYQSARNTDYEVNAL-------- 746
V + P +F+F YS KSD W+ G + +E+F PF + ++YEV +
Sbjct: 165 VKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPF---EKKSNYEVVEMISRGFRLY 221
Query: 747 -PQLNTN-VPEVMRRLVAKLLENDPSDRPS-AELAATV 781
P+L + V EVM P RP+ AEL +
Sbjct: 222 RPKLASMTVYEVMYS----CWHEKPEGRPTFAELLRAI 255
>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase,
Cyclin-Dependent protein Kinase 5. Serine/Threonine
Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The CDK5
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDK5 is unusual in
that it is regulated by non-cyclin proteins, p35 and p39.
It is highly expressed in the nervous system and is
critical in normal neural development and function. It
plays a role in neuronal migration and differentiation,
and is also important in synaptic plasticity and
learning. CDK5 also participates in protecting against
cell death and promoting angiogenesis. Impaired CDK5
activity is implicated in Alzheimer's disease,
amyotrophic lateral sclerosis, Parkinson's disease,
Huntington's disease and acute neuronal injury.
Length = 284
Score = 50.9 bits (122), Expect = 3e-06
Identities = 60/223 (26%), Positives = 88/223 (39%), Gaps = 31/223 (13%)
Query: 1446 DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 1505
DL+ Y + QLL+G+ + H HRDLK N+L+ N +L
Sbjct: 84 DLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLKPQNLLI-----NKNGEL 138
Query: 1506 VITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNYSKS-DAWT 1562
+ DFG G+ ++ SA++ V L P+V LF YS S D W+
Sbjct: 139 KLADFG--LARAFGIPVRCYSAEV-----VTLWYRPPDV------LFGAKLYSTSIDMWS 185
Query: 1563 AGTVAYEIFGHDNPFYQSARNTDYWHRKWLWQHLVYSHSSTTPSTVAYEIFGHDNPFYQS 1622
AG + E+ P + D R +++ L + P D Y
Sbjct: 186 AGCIFAELANAGRPLFPGNDVDDQLKR--IFRLLGTPTEESWPGVSKLP----DYKPYPM 239
Query: 1623 ARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 1665
T VN +P+LN+ R L+ LL +P R SAE A
Sbjct: 240 YPATTSLVNVVPKLNST----GRDLLQNLLVCNPVQRISAEEA 278
Score = 45.1 bits (107), Expect = 2e-04
Identities = 56/217 (25%), Positives = 79/217 (36%), Gaps = 61/217 (28%)
Query: 925 DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 984
DL+ Y + QLL+G+ + H HRDLK N+L+ N +L
Sbjct: 84 DLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLKPQNLLI-----NKNGEL 138
Query: 985 VITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNYSKS-DAWT 1041
+ DFG G+ ++ SA++ V L P+V LF YS S D W+
Sbjct: 139 KLADFG--LARAFGIPVRCYSAEV-----VTLWYRPPDV------LFGAKLYSTSIDMWS 185
Query: 1042 AGTVAYE-----------------------IFGH-------------DNPFYQSARNTDY 1065
AG + E + G D Y T
Sbjct: 186 AGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLPDYKPYPMYPATTS 245
Query: 1066 EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 1102
VN +P+LN+ R L+ LL +P R SAE A
Sbjct: 246 LVNVVPKLNST----GRDLLQNLLVCNPVQRISAEEA 278
>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the
Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein
Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and
Jak3; catalytic (c) domain (repeat 2). The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Jak2 and Jak3 are members
of the Janus kinase (Jak) subfamily of proteins, which
are cytoplasmic (or nonreceptor) tyr kinases containing
an N-terminal FERM domain, followed by a Src homology 2
(SH2) domain, a pseudokinase domain, and a C-terminal
catalytic tyr kinase domain. Jaks are crucial for
cytokine receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs). Jak2
is widely expressed in many tissues while Jak3 is
expressed only in hematopoietic cells. Jak2 is essential
for the signaling of hormone-like cytokines such as
growth hormone, erythropoietin, thrombopoietin, and
prolactin, as well as some IFNs and cytokines that signal
through the IL-3 and gp130 receptors. Jak3 binds the
shared receptor subunit common gamma chain and thus, is
essential in the signaling of cytokines that use it such
as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption
of Jak2 in mice results in an embryonic lethal phenotype
with multiple defects including erythropoietic and
cardiac abnormalities. It is the only Jak gene that
results in a lethal phenotype when disrupted in mice. A
mutation in the pseudokinase domain of Jak2, V617F, is
present in many myeloproliferative diseases, including
almost all patients with polycythemia vera, and 50% of
patients with essential thrombocytosis and myelofibrosis.
Jak3 is important in lymphoid development and myeloid
cell differentiation. Inactivating mutations in Jak3 have
been reported in humans with severe combined
immunodeficiency (SCID).
Length = 284
Score = 50.5 bits (121), Expect = 3e-06
Identities = 67/248 (27%), Positives = 98/248 (39%), Gaps = 58/248 (23%)
Query: 1432 RNMSLFILMKKYNTDLRNYL---RERCAQLSMHERILLFT-QLLEGVTHLNMHRTAHRDL 1487
RN+ L + Y + LR+YL RER H ++LL+ Q+ +G+ +L R HRDL
Sbjct: 80 RNLRLVMEYLPYGS-LRDYLQKHRERLD----HRKLLLYASQICKGMEYLGSKRYVHRDL 134
Query: 1488 KSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP 1547
+ NIL++ SE+ ++ I DFG T +Y + APE T
Sbjct: 135 ATRNILVE-SEN----RVKIGDFG--LTKVLPQDKEYYKVREPGESPIFWYAPES--LTE 185
Query: 1548 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYWHRKWLWQHLVYSHSSTTPST 1607
FS SD W+ G V YE+F YS S +P
Sbjct: 186 SKFS----VASDVWSFGVVLYELF-------------------------TYSDKSCSPPA 216
Query: 1608 VAYEIFGHDNPFYQSARN------TDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS 1661
+ G+D + + + A P + +M+ NDPS RPS
Sbjct: 217 EFMRMMGNDKQGQMIVYHLIELLKNNGRLPAPPGCPAEIYAIMKECWN----NDPSQRPS 272
Query: 1662 -AELAATV 1668
+ELA V
Sbjct: 273 FSELALQV 280
Score = 46.3 bits (110), Expect = 7e-05
Identities = 63/227 (27%), Positives = 93/227 (40%), Gaps = 58/227 (25%)
Query: 911 RNMSLFILMKKYNTDLRNYL---RERCAQLSMHERILLFT-QLLEGVTHLNMHRTAHRDL 966
RN+ L + Y + LR+YL RER H ++LL+ Q+ +G+ +L R HRDL
Sbjct: 80 RNLRLVMEYLPYGS-LRDYLQKHRERLD----HRKLLLYASQICKGMEYLGSKRYVHRDL 134
Query: 967 KSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP 1026
+ NIL++ SE+ ++ I DFG T +Y + APE T
Sbjct: 135 ATRNILVE-SEN----RVKIGDFG--LTKVLPQDKEYYKVREPGESPIFWYAPES--LTE 185
Query: 1027 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVA 1086
FS SD W+ G V YE+F + S ++ + + + M +V
Sbjct: 186 SKFS----VASDVWSFGVVLYELFTY------SDKSCSPPAEFMRMMGNDKQGQM--IVY 233
Query: 1087 KLLE---------------------------NDPSDRPS-AELAATV 1105
L+E NDPS RPS +ELA V
Sbjct: 234 HLIELLKNNGRLPAPPGCPAEIYAIMKECWNNDPSQRPSFSELALQV 280
>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like
Protein Serine/Threonine Kinases. Serine/threonine
kinases (STKs), Ste20-like kinase (SLK)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK-like subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of the
subfamily include SLK, STK10 (also called LOK for
lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni
SLK), and related proteins. SLK promotes apoptosis
through apoptosis signal-regulating kinase 1 (ASK1) and
the mitogen-activated protein kinase (MAPK) p38. It also
plays a role in mediating actin reorganization. STK10 is
responsible in regulating the CD28 responsive element in
T cells, as well as leukocyte function associated antigen
(LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of
activating the MAPK Jun N-terminal kinase (JNK) pathway
in human embryonic kidney (HEK) cells as well as in
Xenopus oocytes. It may participate in regulating MAPK
cascades during host-parasite interactions.
Length = 280
Score = 50.5 bits (121), Expect = 3e-06
Identities = 51/195 (26%), Positives = 69/195 (35%), Gaps = 50/195 (25%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
Q+LE + L+ H+ HRDLK+ NILL + D + + DFG S NKS ++Q
Sbjct: 111 QMLEALNFLHSHKVIHRDLKAGNILL--TLDG---DVKLADFGVSAKNKS--TLQKRDTF 163
Query: 1529 IELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYW 1587
I G MAPEV F Y K+D W+ G E+ + P
Sbjct: 164 I---GTPYWMAPEVVACET--FKDNPYDYKADIWSLGITLIELAQMEPP----------- 207
Query: 1588 HRKWLWQHLVYSHSSTTPSTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRL 1647
H P V +I + P N
Sbjct: 208 ------------HHELNPMRVLLKILKSEPPTLDQPSKWSSSFND--------------F 241
Query: 1648 VAKLLENDPSDRPSA 1662
+ L DP DRP+A
Sbjct: 242 LKSCLVKDPDDRPTA 256
Score = 49.7 bits (119), Expect = 6e-06
Identities = 37/103 (35%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
Q+LE + L+ H+ HRDLK+ NILL + D + + DFG S NKS ++Q
Sbjct: 111 QMLEALNFLHSHKVIHRDLKAGNILL--TLDG---DVKLADFGVSAKNKS--TLQKRDTF 163
Query: 1008 IELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAGTVAYEI 1049
I G MAPEV F Y K+D W+ G E+
Sbjct: 164 I---GTPYWMAPEVVACET--FKDNPYDYKADIWSLGITLIEL 201
>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase,
Fungal Mitogen-Activated Protein Kinase MPK1.
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated
Protein Kinase (MAPK) MPK1 subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MPK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily is
composed of the MAPKs MPK1 from Saccharomyces cerevisiae,
Pmk1 from Schizosaccharomyces pombe, and similar
proteins. MAPKs are important mediators of cellular
responses to extracellular signals. MPK1 (also called
Slt2) and Pmk1 (also called Spm1) are stress-activated
MAPKs that regulate the cell wall integrity (CWI)
pathway, and are therefore important in the maintainance
of cell shape, cell wall construction, morphogenesis, and
ion homeostasis. MPK1 is activated in response to cell
wall stress including heat stimulation, osmotic shock, UV
irradiation, and any agents that interfere with cell wall
biogenesis such as chitin antagonists, caffeine, or
zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which
are regulated by the MAP3K Bck1. Pmk1 is also activated
by multiple stresses including elevated temperatures,
hyper- or hypotonic stress, glucose deprivation, exposure
to cell-wall damaging compounds, and oxidative stress. It
is regulated by the MAP2K Pek1, which is regulated by the
MAP3K Mkh1.
Length = 332
Score = 50.5 bits (121), Expect = 4e-06
Identities = 79/367 (21%), Positives = 133/367 (36%), Gaps = 83/367 (22%)
Query: 1320 QIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILK---AMSKELLPLRKPLR 1376
++ K + +G +V A + AI K SK++L ++ LR
Sbjct: 3 ELIKELGQGAYGIVCSARNAETSEEETV-----------AIKKITNVFSKKIL-AKRALR 50
Query: 1377 LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSL 1436
E L+ H N+ ++ D +++P L
Sbjct: 51 --ELKLLRHFRG---HKNITCLY-----------DMDIVFPGNFN-------------EL 81
Query: 1437 FILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNIL--L 1494
++ + DL +R H + ++ Q+L G+ +++ HRDLK N+L
Sbjct: 82 YLYEELMEADLHQIIRSGQPLTDAHFQSFIY-QILCGLKYIHSANVLHRDLKPGNLLVNA 140
Query: 1495 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPGLFS 1551
DC +L I DFG + G S + VA APE+ L S
Sbjct: 141 DC-------ELKICDFGLA----RGFSENPGENAGFMTEYVATRWYRAPEIML------S 183
Query: 1552 FVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYWHRKWLWQHLVYSHSSTTPSTVAY 1610
F +Y+K+ D W+ G + E+ G P + + DY + ++ + T S +
Sbjct: 184 FQSYTKAIDVWSVGCILAELLGR-KPVF---KGKDYVDQLNQILQVLGTPDEETLSRIGS 239
Query: 1611 E---IFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT 1667
+ P +E + P N P + L+ KLL DP+ R S E A
Sbjct: 240 PKAQNYIRSLPNI---PKKPFE-SIFPNAN---PLAL-DLLEKLLAFDPTKRISVEEALE 291
Query: 1668 VCQLYLW 1674
L +W
Sbjct: 292 HPYLAIW 298
Score = 47.0 bits (112), Expect = 5e-05
Identities = 53/204 (25%), Positives = 75/204 (36%), Gaps = 58/204 (28%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNIL--LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 1005
Q+L G+ +++ HRDLK N+L DC +L I DFG + G S
Sbjct: 113 QILCGLKYIHSANVLHRDLKPGNLLVNADC-------ELKICDFGLA----RGFSENPGE 161
Query: 1006 ADIELGGNVALM---APEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSAR 1061
+ VA APE+ L SF +Y+K+ D W+ G + E+ G P ++
Sbjct: 162 NAGFMTEYVATRWYRAPEIML------SFQSYTKAIDVWSVGCILAELLGR-KPVFKGKD 214
Query: 1062 NTDYEVNALPQLNTNVPEVMRR----------------------------------LVAK 1087
D L L T E + R L+ K
Sbjct: 215 YVDQLNQILQVLGTPDEETLSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEK 274
Query: 1088 LLENDPSDRPSAELAATVCQLYLW 1111
LL DP+ R S E A L +W
Sbjct: 275 LLAFDPTKRISVEEALEHPYLAIW 298
>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src
kinase-like Protein Tyrosine Kinases. Protein Tyrosine
Kinase (PTK) family; C-terminal Src kinase (Csk)
subfamily; catalytic (c) domain. The Csk subfamily is
composed of Csk, Chk, and similar proteins. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and SH2,
N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. To inhibit Src kinases,
Csk and Chk are translocated to the membrane via binding
to specific transmembrane proteins, G-proteins, or
adaptor proteins near the membrane. Csk catalyzes the tyr
phosphorylation of the regulatory C-terminal tail of Src
kinases, resulting in their inactivation. Chk inhibit Src
kinases using a noncatalytic mechanism by simply binding
to them. As negative regulators of Src kinases, Csk and
Chk play important roles in cell proliferation, survival,
and differentiation, and consequently, in cancer
development and progression.
Length = 256
Score = 50.1 bits (120), Expect = 4e-06
Identities = 60/260 (23%), Positives = 102/260 (39%), Gaps = 79/260 (30%)
Query: 1318 DIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 1377
++++G I KG V +RG + A+K + + S A+ + L
Sbjct: 7 ELKLGATIGKGEFGDVMLGDYRGQKVAVKCLKDDSTAAQAF------------------L 48
Query: 1378 NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLF 1437
E +M ++ HPN+V + + + +Y
Sbjct: 49 AEASVMTTLR----HPNLVQ-------LLGVVLQGNPLY--------------------- 76
Query: 1438 IL---MKKYNTDLRNYLRER-CAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNIL 1493
I+ M K + L +YLR R A +++ +++ + EG+ +L HRDL + N+L
Sbjct: 77 IVTEYMAKGS--LVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLAARNVL 134
Query: 1494 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGN--VALMAPEVALATPGLFS 1551
+ SED ++DFG + G G V APE AL FS
Sbjct: 135 V--SEDLVAK---VSDFGLAKEASQGQD----------SGKLPVKWTAPE-ALRE-KKFS 177
Query: 1552 FVNYSKSDAWTAGTVAYEIF 1571
+KSD W+ G + +EI+
Sbjct: 178 ----TKSDVWSFGILLWEIY 193
Score = 44.7 bits (106), Expect = 2e-04
Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 26/135 (19%)
Query: 919 MKKYNTDLRNYLRER-CAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSE 977
M K + L +YLR R A +++ +++ + EG+ +L HRDL + N+L+ SE
Sbjct: 82 MAKGS--LVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLAARNVLV--SE 137
Query: 978 DNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGN--VALMAPEVALATPGLFSFVNYS 1035
D ++DFG + G G V APE AL FS +
Sbjct: 138 DLVAK---VSDFGLAKEASQGQD----------SGKLPVKWTAPE-ALRE-KKFS----T 178
Query: 1036 KSDAWTAGTVAYEIF 1050
KSD W+ G + +EI+
Sbjct: 179 KSDVWSFGILLWEIY 193
>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine
Kinase, Never In Mitosis gene A-related kinase 6.
Serine/Threonine Kinases (STKs), Never In Mitosis gene A
(NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek6 subfamily is one
of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part of
a larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek6 is required
for the transition from metaphase to anaphase. It also
plays important roles in mitotic spindle formation and
cytokinesis. Activated by Nek9 during mitosis, Nek6
phosphorylates Eg5, a kinesin that is important for
spindle bipolarity. Nek6 localizes to spindle
microtubules during metaphase and anaphase, and to the
midbody during cytokinesis.
Length = 267
Score = 50.0 bits (119), Expect = 4e-06
Identities = 47/158 (29%), Positives = 67/158 (42%), Gaps = 22/158 (13%)
Query: 946 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 1005
F QL V H++ R HRD+K N+ + + L + F SS T +
Sbjct: 112 FVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKT----------T 161
Query: 1006 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARN--- 1062
A L G M+PE + G ++F KSD W+ G + YE+ +PFY N
Sbjct: 162 AAHSLVGTPYYMSPE-RIHENG-YNF----KSDIWSLGCLLYEMAALQSPFYGDKMNLFS 215
Query: 1063 --TDYEVNALPQLNT-NVPEVMRRLVAKLLENDPSDRP 1097
E P L T + E +R LV+ + DP RP
Sbjct: 216 LCQKIEQCDYPPLPTEHYSEKLRELVSMCIYPDPDQRP 253
Score = 44.6 bits (105), Expect = 3e-04
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 16/117 (13%)
Query: 1467 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 1526
F QL V H++ R HRD+K N+ + + L + F SS T +
Sbjct: 112 FVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKT----------T 161
Query: 1527 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARN 1583
A L G M+PE + G ++F KSD W+ G + YE+ +PFY N
Sbjct: 162 AAHSLVGTPYYMSPE-RIHENG-YNF----KSDIWSLGCLLYEMAALQSPFYGDKMN 212
Score = 33.5 bits (76), Expect = 0.89
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 271 KSDAWTAGTVAYEIFGHDNPFYQSARN-----TDYEVNALPQLNT-NVPEVMRRLVAKLL 324
KSD W+ G + YE+ +PFY N E P L T + E +R LV+ +
Sbjct: 186 KSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIEQCDYPPLPTEHYSEKLRELVSMCI 245
Query: 325 ENDPSDRP 332
DP RP
Sbjct: 246 YPDPDQRP 253
Score = 33.5 bits (76), Expect = 0.89
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 712 KSDAWTAGTVAYEIFGHDNPFYQSARN-----TDYEVNALPQLNT-NVPEVMRRLVAKLL 765
KSD W+ G + YE+ +PFY N E P L T + E +R LV+ +
Sbjct: 186 KSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIEQCDYPPLPTEHYSEKLRELVSMCI 245
Query: 766 ENDPSDRP 773
DP RP
Sbjct: 246 YPDPDQRP 253
>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine
Kinase, G protein-coupled Receptor Kinase 5.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The GRK subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. GRKs phosphorylate
and regulate G protein-coupled receptors (GPCRs), the
largest superfamily of cell surface receptors which
regulate some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK5 is widely expressed in many tissues.
It associates with the membrane though an N-terminal PIP2
binding domain and also binds phospholipids via its
C-terminus. GRK5 deficiency is associated with early
Alzheimer's disease in humans and mouse models. GRK5 also
plays a crucial role in the pathogenesis of sporadic
Parkinson's disease. It participates in the regulation
and desensitization of PDGFRbeta, a receptor tyrosine
kinase involved in a variety of downstream cellular
effects including cell growth, chemotaxis, apoptosis, and
angiogenesis. GRK5 also regulates Toll-like receptor 4,
which is involved in innate and adaptive immunity.
Length = 285
Score = 50.0 bits (119), Expect = 5e-06
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 22/119 (18%)
Query: 941 ERILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGL 999
ER L + ++L G+ L+ T +RDLK +NILLD D+G + GL
Sbjct: 102 ERALFYAAEILCGLEDLHRENTVYRDLKPENILLD-------------DYGHIRISDLGL 148
Query: 1000 SMQYSSADIELG--GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF 1056
+++ + G G V MAPEV S D W G + YE+ +PF
Sbjct: 149 AVKIPEGESIRGRVGTVGYMAPEVLNNQRYTLS------PDYWGLGCLIYEMIEGQSPF 201
Score = 50.0 bits (119), Expect = 5e-06
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 22/119 (18%)
Query: 1462 ERILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGL 1520
ER L + ++L G+ L+ T +RDLK +NILLD D+G + GL
Sbjct: 102 ERALFYAAEILCGLEDLHRENTVYRDLKPENILLD-------------DYGHIRISDLGL 148
Query: 1521 SMQYSSADIELG--GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF 1577
+++ + G G V MAPEV S D W G + YE+ +PF
Sbjct: 149 AVKIPEGESIRGRVGTVGYMAPEVLNNQRYTLS------PDYWGLGCLIYEMIEGQSPF 201
>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine
Kinases, Mitogen-Activated Protein Kinases 4 and 6.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAPK4/6 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. MAPK4 is also called ERK4 or
p63MAPK, while MAPK6 is also called ERK3 or p97MAPK.
MAPK4 and MAPK6 are atypical MAPKs that are not regulated
by MAP2Ks. MAPK6 is expressed ubiquitously with highest
amounts in brain and skeletal muscle. It may be involved
in the control of cell differentiation by negatively
regulating cell cycle progression in certain conditions.
It may also play a role in glucose-induced insulin
secretion. MAPK6 and MAPK4 cooperate to regulate the
activity of MAPK-activated protein kinase 5 (MK5),
leading to its relocation to the cytoplasm and exclusion
from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways
may play critical roles in embryonic and post-natal
development.
Length = 342
Score = 50.2 bits (120), Expect = 5e-06
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 27/143 (18%)
Query: 914 SLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL 973
S++I+ + TDL N L + LS L QLL G+ +++ HRDLK N+ +
Sbjct: 90 SVYIVQEYMETDLANVLEQ--GPLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFI 147
Query: 974 DCSEDNTCPQLVITDFG------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG 1027
+ +ED L I DFG Y++K LS + +P +
Sbjct: 148 N-TEDLV---LKIGDFGLARIVDPHYSHKGYLSEGLVTK--------WYRSPRL------ 189
Query: 1028 LFSFVNYSKS-DAWTAGTVAYEI 1049
L S NY+K+ D W AG + E+
Sbjct: 190 LLSPNNYTKAIDMWAAGCIFAEM 212
Score = 50.2 bits (120), Expect = 5e-06
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 27/143 (18%)
Query: 1435 SLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL 1494
S++I+ + TDL N L + LS L QLL G+ +++ HRDLK N+ +
Sbjct: 90 SVYIVQEYMETDLANVLEQ--GPLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFI 147
Query: 1495 DCSEDNTCPQLVITDFG------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG 1548
+ +ED L I DFG Y++K LS + +P +
Sbjct: 148 N-TEDLV---LKIGDFGLARIVDPHYSHKGYLSEGLVTK--------WYRSPRL------ 189
Query: 1549 LFSFVNYSKS-DAWTAGTVAYEI 1570
L S NY+K+ D W AG + E+
Sbjct: 190 LLSPNNYTKAIDMWAAGCIFAEM 212
>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine
Kinase, G protein-coupled Receptor Kinase.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The GRK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. GRKs phosphorylate and
regulate G protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors, which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. GRKs contain a central catalytic
domain, flanked by N- and C-terminal extensions. The
N-terminus contains an RGS (regulator of G protein
signaling) homology (RH) domain and several motifs. The
C-terminus diverges among different groups of GRKs. There
are seven types of GRKs, named GRK1 to GRK7. They are
subdivided into three main groups: visual (GRK1/7);
beta-adrenergic receptor kinases (GRK2/3); and GRK4-like
(GRK4/5/6). Expression of GRK2/3/5/6 is widespread while
GRK1/4/7 show a limited tissue distribution. The
substrate spectrum of the widely expressed GRKs partially
overlaps. GRKs play important roles in the
cardiovascular, immune, respiratory, skeletal, and
nervous systems.
Length = 277
Score = 49.8 bits (119), Expect = 5e-06
Identities = 42/164 (25%), Positives = 66/164 (40%), Gaps = 28/164 (17%)
Query: 942 RILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLS 1000
R + + Q++ G+ HL+ R +RDLK +N+LLD + I+D G + K G
Sbjct: 96 RAIFYAAQIICGLEHLHQRRIVYRDLKPENVLLD--DHGNVR---ISDLGLAVELKGGKK 150
Query: 1001 MQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSA 1060
++ + G MAPEV ++ F D + G YE+ +PF Q
Sbjct: 151 IKGRA------GTPGYMAPEVLQG--EVYDF----SVDWFALGCTLYEMIAGRSPFRQ-- 196
Query: 1061 RNTDYEVNALPQLNTNVP--------EVMRRLVAKLLENDPSDR 1096
R E L + + + L LL+ DP R
Sbjct: 197 RKEKVEKEELKRRTLEMAVEYPDKFSPEAKDLCEALLQKDPEKR 240
Score = 44.4 bits (105), Expect = 3e-04
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 1463 RILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLS 1521
R + + Q++ G+ HL+ R +RDLK +N+LLD + I+D G + K G
Sbjct: 96 RAIFYAAQIICGLEHLHQRRIVYRDLKPENVLLD--DHGNVR---ISDLGLAVELKGGKK 150
Query: 1522 MQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQ 1579
++ + G MAPEV ++ F D + G YE+ +PF Q
Sbjct: 151 IKGRA------GTPGYMAPEVLQG--EVYDF----SVDWFALGCTLYEMIAGRSPFRQ 196
>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase 1. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, MSK1, N-terminal
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MSK subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MSKs contain an
N-terminal kinase domain (NTD) from the AGC family and a
C-terminal kinase domain (CTD) from the CAMK family,
similar to 90 kDa ribosomal protein S6 kinases (RSKs).
MSKs are activated by two major signaling cascades, the
Ras-MAPK and p38 stress kinase pathways, which trigger
phosphorylation in the activation loop (A-loop) of the
CTD of MSK. The active CTD phosphorylates the hydrophobic
motif (HM) of NTD, which facilitates the phosphorylation
of the A-loop and activates the NTD, which in turn
phosphorylates downstream targets. MSK1 plays a role in
the regulation of translational control and
transcriptional activation. It phosphorylates the
transcription factors, CREB and NFkappaB. It also
phosphorylates the nucleosomal proteins H3 and HMG-14.
Increased phosphorylation of MEK1 is associated with the
development of cerebral ischemic/hypoxic preconditioning.
Length = 290
Score = 50.0 bits (119), Expect = 5e-06
Identities = 43/183 (23%), Positives = 83/183 (45%), Gaps = 30/183 (16%)
Query: 925 DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 984
+L +L +R + E + +++ + HL+ +RD+K +NILLD + +
Sbjct: 91 ELFTHLSQR-ERFKEQEVQIYSGEIVLALEHLHKLGIIYRDIKLENILLDSNG-----HV 144
Query: 985 VITDFGSSYTNKSGLSMQYSSADIE----LGGNVALMAPEVALATPGLFSFVNYSKS-DA 1039
V+TDF GLS ++ ++E G + MAP++ G + K+ D
Sbjct: 145 VLTDF--------GLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDG-----GHDKAVDW 191
Query: 1040 WTAGTVAYEIFGHDNPF-YQSARNTDYEVN-----ALPQLNTNVPEVMRRLVAKLLENDP 1093
W+ G + YE+ +PF +N+ E++ + P + + + ++ +LL DP
Sbjct: 192 WSMGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDIIQRLLMKDP 251
Query: 1094 SDR 1096
R
Sbjct: 252 KKR 254
Score = 45.8 bits (108), Expect = 1e-04
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 24/137 (17%)
Query: 1446 DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 1505
+L +L +R + E + +++ + HL+ +RD+K +NILLD + +
Sbjct: 91 ELFTHLSQR-ERFKEQEVQIYSGEIVLALEHLHKLGIIYRDIKLENILLDSNG-----HV 144
Query: 1506 VITDFGSSYTNKSGLSMQYSSADIE----LGGNVALMAPEVALATPGLFSFVNYSKS-DA 1560
V+TDF GLS ++ ++E G + MAP++ G + K+ D
Sbjct: 145 VLTDF--------GLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDG-----GHDKAVDW 191
Query: 1561 WTAGTVAYEIFGHDNPF 1577
W+ G + YE+ +PF
Sbjct: 192 WSMGVLMYELLTGASPF 208
Score = 34.2 bits (78), Expect = 0.61
Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 24/125 (19%)
Query: 218 QLVITDFGSSYTNKSGLSMQYSSADIE----LGGNVALMAPEVALATPGLFSFVNYSKS- 272
+V+TDFG LS ++ ++E G + MAP++ G + K+
Sbjct: 143 HVVLTDFG--------LSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDG-----GHDKAV 189
Query: 273 DAWTAGTVAYEIFGHDNPF-YQSARNTDYEVN-----ALPQLNTNVPEVMRRLVAKLLEN 326
D W+ G + YE+ +PF +N+ E++ + P + + + ++ +LL
Sbjct: 190 DWWSMGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDIIQRLLMK 249
Query: 327 DPSDR 331
DP R
Sbjct: 250 DPKKR 254
Score = 34.2 bits (78), Expect = 0.61
Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 24/125 (19%)
Query: 659 QLVITDFGSSYTNKSGLSMQYSSADIE----LGGNVALMAPEVALATPGLFSFVNYSKS- 713
+V+TDFG LS ++ ++E G + MAP++ G + K+
Sbjct: 143 HVVLTDFG--------LSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDG-----GHDKAV 189
Query: 714 DAWTAGTVAYEIFGHDNPF-YQSARNTDYEVN-----ALPQLNTNVPEVMRRLVAKLLEN 767
D W+ G + YE+ +PF +N+ E++ + P + + + ++ +LL
Sbjct: 190 DWWSMGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDIIQRLLMK 249
Query: 768 DPSDR 772
DP R
Sbjct: 250 DPKKR 254
>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine
Kinase, G protein-coupled Receptor Kinase 1.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The GRK subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. GRKs phosphorylate
and regulate G protein-coupled receptors (GPCRs), the
largest superfamily of cell surface receptors, which
regulate some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs
to the visual group of GRKs and is expressed in retinal
cells. It phosphorylates rhodopsin in rod cells, which
leads to termination of the phototransduction cascade.
Mutations in GRK1 are associated to a recessively
inherited form of stationary nightblindness called Oguchi
disease.
Length = 280
Score = 49.8 bits (119), Expect = 6e-06
Identities = 47/164 (28%), Positives = 64/164 (39%), Gaps = 27/164 (16%)
Query: 942 RILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLS 1000
R +T Q++ G+ HL+ R +RDLK +N+LLD ++ N + I+D G + K G S
Sbjct: 98 RACFYTAQIISGLEHLHQRRIIYRDLKPENVLLD-NDGN----VRISDLGLAVELKDGQS 152
Query: 1001 MQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSA 1060
A G MAPE+ FS D + G YE+ PF A
Sbjct: 153 KTKGYA-----GTPGFMAPELLQGEEYDFSV------DYFALGVTLYEMIAARGPF--RA 199
Query: 1061 RNTDYEVNALPQLNTNVP--------EVMRRLVAKLLENDPSDR 1096
R E L Q N + LL DP R
Sbjct: 200 RGEKVENKELKQRILNDSVTYPDKFSPASKSFCEALLAKDPEKR 243
Score = 47.5 bits (113), Expect = 3e-05
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 1463 RILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLS 1521
R +T Q++ G+ HL+ R +RDLK +N+LLD ++ N + I+D G + K G S
Sbjct: 98 RACFYTAQIISGLEHLHQRRIIYRDLKPENVLLD-NDGN----VRISDLGLAVELKDGQS 152
Query: 1522 MQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF 1577
A G MAPE+ FS D + G YE+ PF
Sbjct: 153 KTKGYA-----GTPGFMAPELLQGEEYDFSV------DYFALGVTLYEMIAARGPF 197
>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine
Kinase, PFTAIRE-2 kinase. Serine/Threonine Kinases
(STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PFTAIRE-2 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PFTAIRE-2 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PFTAIRE-2 is also
referred to as ALS2CR7 (amyotrophic lateral sclerosis 2
(juvenile) chromosome region candidate 7). It may be
associated with amyotrophic lateral sclerosis 2 (ALS2),
an autosomal recessive form of juvenile ALS. The function
of PFTAIRE-2 is not yet known.
Length = 291
Score = 50.0 bits (119), Expect = 6e-06
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 914 SLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL 973
+L + + +TDL Y+ + L + L QLL G+ +++ HRDLK N+L+
Sbjct: 77 TLTFVFEYMHTDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLI 136
Query: 974 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 1033
+L + DFG + KS S YSS + L P+V L +
Sbjct: 137 SY-----LGELKLADFGLARA-KSIPSQTYSSEVVTLW----YRPPDVLLGA------TD 180
Query: 1034 YSKS-DAWTAGTVAYEIF 1050
YS + D W AG + E+
Sbjct: 181 YSSALDIWGAGCIFIEML 198
Score = 50.0 bits (119), Expect = 6e-06
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 1435 SLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL 1494
+L + + +TDL Y+ + L + L QLL G+ +++ HRDLK N+L+
Sbjct: 77 TLTFVFEYMHTDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLI 136
Query: 1495 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 1554
+L + DFG + KS S YSS + L P+V L +
Sbjct: 137 SY-----LGELKLADFGLARA-KSIPSQTYSSEVVTLW----YRPPDVLLGA------TD 180
Query: 1555 YSKS-DAWTAGTVAYEIF 1571
YS + D W AG + E+
Sbjct: 181 YSSALDIWGAGCIFIEML 198
>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein
Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2
and similar domains. Serine/Threonine Kinases (STKs),
Chlamydomonas reinhardtii FA2-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Chlamydomonas
reinhardtii FA2-like subfamily belongs to the
(NIMA)-related kinase (Nek) family. The Nek family
includes seven different Chlamydomonas Neks (CNKs 1-6 and
Fa2). This subfamily includes FA2 and CNK4. The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase.
Chlamydomonas reinhardtii FA2 was discovered in a genetic
screen for deflagellation-defective mutants. It is
essential for basal-body/centriole-associated microtubule
severing, and plays a role in cell cycle progression. No
cellular function has yet been ascribed to CNK4.
Length = 256
Score = 49.4 bits (118), Expect = 6e-06
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 20/145 (13%)
Query: 915 LFILMK-KYNTDLRNYLRERCAQLSMHERIL-LFTQLLEGVTHLNMHRTAHRDLKSDNIL 972
L I+M+ N DL L+ + + +++ F Q+L G+ HL+ + HRD+KS N+
Sbjct: 74 LNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKKILHRDIKSLNLF 133
Query: 973 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV 1032
LD + + I D G + LS + A+ + G ++PE+ P
Sbjct: 134 LDAYD-----NVKIGDLGVAKL----LSDNTNFANTIV-GTPYYLSPELCEDKP------ 177
Query: 1033 NYS-KSDAWTAGTVAYEIFGHDNPF 1056
Y+ KSD W G V YE +PF
Sbjct: 178 -YNEKSDVWALGVVLYECCTGKHPF 201
Score = 49.4 bits (118), Expect = 6e-06
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 20/145 (13%)
Query: 1436 LFILMK-KYNTDLRNYLRERCAQLSMHERIL-LFTQLLEGVTHLNMHRTAHRDLKSDNIL 1493
L I+M+ N DL L+ + + +++ F Q+L G+ HL+ + HRD+KS N+
Sbjct: 74 LNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKKILHRDIKSLNLF 133
Query: 1494 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV 1553
LD + + I D G + LS + A+ + G ++PE+ P
Sbjct: 134 LDAYD-----NVKIGDLGVAKL----LSDNTNFANTIV-GTPYYLSPELCEDKP------ 177
Query: 1554 NYS-KSDAWTAGTVAYEIFGHDNPF 1577
Y+ KSD W G V YE +PF
Sbjct: 178 -YNEKSDVWALGVVLYECCTGKHPF 201
>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase,
Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK)
family; Focal Adhesion Kinase (FAK); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases such
as protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FAK is a
cytoplasmic (or nonreceptor) tyr kinase that contains an
autophosphorylation site and a FERM domain at the
N-terminus, a central tyr kinase domain, proline-rich
regions, and a C-terminal FAT (focal adhesion targeting)
domain. FAK activity is dependent on integrin-mediated
cell adhesion, which facilitates N-terminal
autophosphorylation. Full activation is achieved by the
phosphorylation of its two adjacent A-loop tyrosines. FAK
is important in mediating signaling initiated at sites of
cell adhesions and at growth factor receptors. Through
diverse molecular interactions, FAK functions as a
biosensor or integrator to control cell motility. It is a
key regulator of cell survival, proliferation, migration
and invasion, and thus plays an important role in the
development and progression of cancer. Src binds to
autophosphorylated FAK forming the FAK-Src dual kinase
complex, which is activated in a wide variety of tumor
cells and generates signals promoting growth and
metastasis. FAK is being developed as a target for cancer
therapy.
Length = 270
Score = 49.3 bits (118), Expect = 6e-06
Identities = 53/195 (27%), Positives = 78/195 (40%), Gaps = 30/195 (15%)
Query: 925 DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 984
+LR+YL+ L + IL QL + +L R HRD+ + N+L+ C +L
Sbjct: 92 ELRSYLQVNKYSLDLASLILYSYQLSTALAYLESKRFVHRDIAARNVLV---SSPDCVKL 148
Query: 985 VITDFG-SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY----SKSDA 1039
DFG S Y Y ++ +L + MAPE +N+ S SD
Sbjct: 149 --GDFGLSRYLEDESY---YKASKGKL--PIKWMAPES----------INFRRFTSASDV 191
Query: 1040 WTAGTVAYEIFGHDNPFYQSARNTDY----EVNALPQLNTNVPEVMRRLVAKLLENDPSD 1095
W G +EI +Q +N D E + N P + L+ K DPS
Sbjct: 192 WMFGVCMWEILMLGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSK 251
Query: 1096 RPS-AELAATVCQLY 1109
RP EL A + +
Sbjct: 252 RPRFTELKAQLSDIL 266
Score = 41.3 bits (97), Expect = 0.003
Identities = 40/145 (27%), Positives = 60/145 (41%), Gaps = 25/145 (17%)
Query: 1446 DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 1505
+LR+YL+ L + IL QL + +L R HRD+ + N+L+ C +L
Sbjct: 92 ELRSYLQVNKYSLDLASLILYSYQLSTALAYLESKRFVHRDIAARNVLV---SSPDCVKL 148
Query: 1506 VITDFG-SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY----SKSDA 1560
DFG S Y Y ++ +L + MAPE +N+ S SD
Sbjct: 149 --GDFGLSRYLEDESY---YKASKGKL--PIKWMAPES----------INFRRFTSASDV 191
Query: 1561 WTAGTVAYEIFGHDNPFYQSARNTD 1585
W G +EI +Q +N D
Sbjct: 192 WMFGVCMWEILMLGVKPFQGVKNND 216
Score = 31.6 bits (72), Expect = 2.9
Identities = 28/102 (27%), Positives = 38/102 (37%), Gaps = 19/102 (18%)
Query: 252 MAPEVALATPGLFSFVNY----SKSDAWTAGTVAYEIFGHDNPFYQSARNTDY----EVN 303
MAPE +N+ S SD W G +EI +Q +N D E
Sbjct: 175 MAPES----------INFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNNDVIGRIENG 224
Query: 304 ALPQLNTNVPEVMRRLVAKLLENDPSDRPS-AELAATVCQLY 344
+ N P + L+ K DPS RP EL A + +
Sbjct: 225 ERLPMPPNCPPTLYSLMTKCWAYDPSKRPRFTELKAQLSDIL 266
Score = 31.6 bits (72), Expect = 2.9
Identities = 28/102 (27%), Positives = 38/102 (37%), Gaps = 19/102 (18%)
Query: 693 MAPEVALATPGLFSFVNY----SKSDAWTAGTVAYEIFGHDNPFYQSARNTDY----EVN 744
MAPE +N+ S SD W G +EI +Q +N D E
Sbjct: 175 MAPES----------INFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNNDVIGRIENG 224
Query: 745 ALPQLNTNVPEVMRRLVAKLLENDPSDRPS-AELAATVCQLY 785
+ N P + L+ K DPS RP EL A + +
Sbjct: 225 ERLPMPPNCPPTLYSLMTKCWAYDPSKRPRFTELKAQLSDIL 266
>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine
Kinase, Never In Mitosis gene A-related kinase 4.
Serine/Threonine Kinases (STKs), Never In Mitosis gene A
(NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek4 subfamily is one
of a family of 11 different Neks (Nek1-11). The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. Neks are
involved in the regulation of downstream processes
following the activation of Cdc2, and many of their
functions are cell cycle-related. They play critical
roles in microtubule dynamics during ciliogenesis and
mitosis. Nek4 is highly abundant in the testis. Its
specific function is unknown.
Length = 257
Score = 49.2 bits (117), Expect = 6e-06
Identities = 58/214 (27%), Positives = 92/214 (42%), Gaps = 26/214 (12%)
Query: 891 SSLIYPSALPARLNPTGGYGRNMSLFILMK-KYNTDLRNYLRERCAQLSMHERIL-LFTQ 948
S L +P+ + R + G G L+I+M DL + L+E+ +L +++ F Q
Sbjct: 54 SQLKHPNIVAYRESWEGEDGL---LYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQ 110
Query: 949 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADI 1008
+ + +L+ HRDLK+ N+ L + N + + D G + L Q A
Sbjct: 111 IAMALQYLHEKHILHRDLKTQNVFL--TRTNI---IKVGDLGIARV----LENQCDMAST 161
Query: 1009 ELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNT-DYE 1066
L G M+PE LFS Y+ KSD W G YE+ + F N+ Y
Sbjct: 162 -LIGTPYYMSPE-------LFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYR 213
Query: 1067 V--NALPQLNTNVPEVMRRLVAKLLENDPSDRPS 1098
+ LP + + + L+A +L P RPS
Sbjct: 214 IIEGKLPPMPKDYSPELGELIATMLSKRPEKRPS 247
Score = 39.6 bits (92), Expect = 0.010
Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 23/162 (14%)
Query: 1412 SSLIYPSALPARLNPTGGYGRNMSLFILMK-KYNTDLRNYLRERCAQLSMHERIL-LFTQ 1469
S L +P+ + R + G G L+I+M DL + L+E+ +L +++ F Q
Sbjct: 54 SQLKHPNIVAYRESWEGEDGL---LYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQ 110
Query: 1470 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADI 1529
+ + +L+ HRDLK+ N+ L + N + + D G + L Q A
Sbjct: 111 IAMALQYLHEKHILHRDLKTQNVFL--TRTNI---IKVGDLGIARV----LENQCDMAST 161
Query: 1530 ELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEI 1570
L G M+PE LFS Y+ KSD W G YE+
Sbjct: 162 -LIGTPYYMSPE-------LFSNKPYNYKSDVWALGCCVYEM 195
Score = 35.3 bits (81), Expect = 0.20
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 260 TPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNT-DYEV--NALPQLNTNVPEV 315
+P LFS Y+ KSD W G YE+ + F N+ Y + LP + +
Sbjct: 170 SPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIEGKLPPMPKDYSPE 229
Query: 316 MRRLVAKLLENDPSDRPS 333
+ L+A +L P RPS
Sbjct: 230 LGELIATMLSKRPEKRPS 247
Score = 35.3 bits (81), Expect = 0.20
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 701 TPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNT-DYEV--NALPQLNTNVPEV 756
+P LFS Y+ KSD W G YE+ + F N+ Y + LP + +
Sbjct: 170 SPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIEGKLPPMPKDYSPE 229
Query: 757 MRRLVAKLLENDPSDRPS 774
+ L+A +L P RPS
Sbjct: 230 LGELIATMLSKRPEKRPS 247
>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein
Serine/Threonine Kinases. Serine/threonine kinases
(STKs), Nak1 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The Nak1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of
Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae
Kic1p (kinase that interacts with Cdc31p) and related
proteins. Nak1 (also known as N-rich kinase 1), is
required by fission yeast for polarizing the tips of
actin cytoskeleton and is involved in cell growth, cell
separation, cell morphology and cell-cycle progression.
Kic1p is required by budding yeast for cell integrity and
morphogenesis. Kic1p interacts with Cdc31p, the yeast
homologue of centrin, and phosphorylates substrates in a
Cdc31p-dependent manner.
Length = 277
Score = 49.0 bits (117), Expect = 8e-06
Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 34/205 (16%)
Query: 907 GGYGRNMSLFILMKKYNT-DLRNYLR-----ERCAQLSMHERILLFTQLLEGVTHLNMHR 960
G Y + L+I+M+ +R ++ E+ + + E +L + +++
Sbjct: 69 GSYLKGPRLWIIMEYAEGGSVRTLMKAGPIAEKYISVIIRE-------VLVALKYIHKVG 121
Query: 961 TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPE 1020
HRD+K+ NIL+ + + DFG + L Q SS G MAPE
Sbjct: 122 VIHRDIKAANILV-----TNTGNVKLCDFGV-----AALLNQNSSKRSTFVGTPYWMAPE 171
Query: 1021 VALATPGLFSFVNY-SKSDAWTAGTVAYEIFGHDNPFYQ--SARNTDYEV-NALPQLNTN 1076
V Y +K+D W+ G YE+ + P+ + R + P+L N
Sbjct: 172 VITEG------KYYDTKADIWSLGITIYEMATGNPPYSDVDAFRAMMLIPKSKPPRLEDN 225
Query: 1077 -VPEVMRRLVAKLLENDPSDRPSAE 1100
+++R VA L+ +P +R SAE
Sbjct: 226 GYSKLLREFVAACLDEEPKERLSAE 250
Score = 41.3 bits (97), Expect = 0.003
Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 30/150 (20%)
Query: 1428 GGYGRNMSLFILMKKYNT-DLRNYLR-----ERCAQLSMHERILLFTQLLEGVTHLNMHR 1481
G Y + L+I+M+ +R ++ E+ + + E +L + +++
Sbjct: 69 GSYLKGPRLWIIMEYAEGGSVRTLMKAGPIAEKYISVIIRE-------VLVALKYIHKVG 121
Query: 1482 TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPE 1541
HRD+K+ NIL+ + + DFG + L Q SS G MAPE
Sbjct: 122 VIHRDIKAANILV-----TNTGNVKLCDFGV-----AALLNQNSSKRSTFVGTPYWMAPE 171
Query: 1542 VALATPGLFSFVNY-SKSDAWTAGTVAYEI 1570
V Y +K+D W+ G YE+
Sbjct: 172 VITEG------KYYDTKADIWSLGITIYEM 195
Score = 34.7 bits (80), Expect = 0.36
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 16/123 (13%)
Query: 218 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWT 276
+ + DFG + L Q SS G MAPEV Y +K+D W+
Sbjct: 139 NVKLCDFGVA-----ALLNQNSSKRSTFVGTPYWMAPEVITEG------KYYDTKADIWS 187
Query: 277 AGTVAYEIFGHDNPFYQ--SARNTDYEV-NALPQLNTN-VPEVMRRLVAKLLENDPSDRP 332
G YE+ + P+ + R + P+L N +++R VA L+ +P +R
Sbjct: 188 LGITIYEMATGNPPYSDVDAFRAMMLIPKSKPPRLEDNGYSKLLREFVAACLDEEPKERL 247
Query: 333 SAE 335
SAE
Sbjct: 248 SAE 250
Score = 34.7 bits (80), Expect = 0.36
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 16/123 (13%)
Query: 659 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWT 717
+ + DFG + L Q SS G MAPEV Y +K+D W+
Sbjct: 139 NVKLCDFGVA-----ALLNQNSSKRSTFVGTPYWMAPEVITEG------KYYDTKADIWS 187
Query: 718 AGTVAYEIFGHDNPFYQ--SARNTDYEV-NALPQLNTN-VPEVMRRLVAKLLENDPSDRP 773
G YE+ + P+ + R + P+L N +++R VA L+ +P +R
Sbjct: 188 LGITIYEMATGNPPYSDVDAFRAMMLIPKSKPPRLEDNGYSKLLREFVAACLDEEPKERL 247
Query: 774 SAE 776
SAE
Sbjct: 248 SAE 250
>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine
Kinase, Never In Mitosis gene A-related kinase 2.
Serine/Threonine Kinases (STKs), Never In Mitosis gene A
(NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek2 subfamily is one
of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part of
a larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The Nek2 subfamily
includes Aspergillus nidulans NIMA kinase, the founding
member of the Nek family, which was identified in a
screen for cell cycle mutants prevented from entering
mitosis. NIMA is essential for mitotic entry and
progression through mitosis, and its degradation is
essential for mitotic exit. NIMA is involved in nuclear
membrane fission. Vertebrate Nek2 is a cell
cycle-regulated STK, localized in centrosomes and
kinetochores, that regulates centrosome splitting at the
G2/M phase. It also interacts with other mitotic kinases
such as Polo-like kinase 1 and may play a role in spindle
checkpoint. An increase in the expression of the human
NEK2 gene is strongly associated with the progression of
non-Hodgkin lymphoma.
Length = 265
Score = 49.2 bits (118), Expect = 9e-06
Identities = 56/215 (26%), Positives = 78/215 (36%), Gaps = 56/215 (26%)
Query: 912 NMSLFILMKKYNT--DL----RNYLRERCAQLSMHERILL--FTQLLEGVTH-----LNM 958
N +L+I+M+ Y DL + +ER + E + TQLL +
Sbjct: 73 NQTLYIVME-YCEGGDLAQLIQKCKKER---KYIEEEFIWRILTQLLLALYECHNRSDPG 128
Query: 959 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMA 1018
+ HRDLK NI LD N +L DFG + S + G M+
Sbjct: 129 NTVLHRDLKPANIFLD---ANNNVKL--GDFGLAKILGHDSSFAKTYV-----GTPYYMS 178
Query: 1019 PEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNV 1077
PE Y KSD W+ G + YE+ PF ARN QL + +
Sbjct: 179 PEQLNHMS-------YDEKSDIWSLGCLIYELCALSPPFT--ARNQL-------QLASKI 222
Query: 1078 PEVM------------RRLVAKLLENDPSDRPSAE 1100
E ++ +L DP RPS E
Sbjct: 223 KEGKFRRIPYRYSSELNEVIKSMLNVDPDKRPSTE 257
Score = 39.9 bits (94), Expect = 0.007
Identities = 46/165 (27%), Positives = 63/165 (38%), Gaps = 37/165 (22%)
Query: 1433 NMSLFILMKKYNT--DL----RNYLRERCAQLSMHERILL--FTQLLEGVTH-----LNM 1479
N +L+I+M+ Y DL + +ER + E + TQLL +
Sbjct: 73 NQTLYIVME-YCEGGDLAQLIQKCKKER---KYIEEEFIWRILTQLLLALYECHNRSDPG 128
Query: 1480 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMA 1539
+ HRDLK NI LD N +L DFG + S + G M+
Sbjct: 129 NTVLHRDLKPANIFLD---ANNNVKL--GDFGLAKILGHDSSFAKTYV-----GTPYYMS 178
Query: 1540 PEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARN 1583
PE Y KSD W+ G + YE+ PF ARN
Sbjct: 179 PEQLNHMS-------YDEKSDIWSLGCLIYELCALSPPFT--ARN 214
Score = 36.8 bits (86), Expect = 0.068
Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 29/97 (29%)
Query: 252 MAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNT 310
M+PE Y KSD W+ G + YE+ PF ARN QL +
Sbjct: 177 MSPEQLNHMS-------YDEKSDIWSLGCLIYELCALSPPFT--ARNQL-------QLAS 220
Query: 311 NVPEVM------------RRLVAKLLENDPSDRPSAE 335
+ E ++ +L DP RPS E
Sbjct: 221 KIKEGKFRRIPYRYSSELNEVIKSMLNVDPDKRPSTE 257
Score = 36.8 bits (86), Expect = 0.068
Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 29/97 (29%)
Query: 693 MAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNT 751
M+PE Y KSD W+ G + YE+ PF ARN QL +
Sbjct: 177 MSPEQLNHMS-------YDEKSDIWSLGCLIYELCALSPPFT--ARNQL-------QLAS 220
Query: 752 NVPEVM------------RRLVAKLLENDPSDRPSAE 776
+ E ++ +L DP RPS E
Sbjct: 221 KIKEGKFRRIPYRYSSELNEVIKSMLNVDPDKRPSTE 257
>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase(MAPKK) subfamily, fungal
Pek1-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling pathways
are important mediators of cellular responses to
extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Pek1/Skh1 from
Schizosaccharomyces pombe and MKK2 from Saccharomyces
cerevisiae, and related proteins. Both fission yeast Pek1
and baker's yeast MKK2 are components of the cell
integrity MAPK pathway. In fission yeast, Pek1
phosphorylates and activates the MAPK Pmk1/Spm1 and is
regulated by the MAPKKK Mkh1. In baker's yeast, the
pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2,
and the MAPKKK Bck1. The cell integrity MAPK cascade is
activated by multiple stress conditions, and is essential
in cell wall construction, morphogenesis, cytokinesis,
and ion homeostasis.
Length = 287
Score = 49.0 bits (117), Expect = 1e-05
Identities = 43/164 (26%), Positives = 64/164 (39%), Gaps = 34/164 (20%)
Query: 950 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIE 1009
L+G+++L+ + HRD+K NILL Q+ + DFG S + L+ ++
Sbjct: 115 LKGLSYLHSRKIIHRDIKPSNILL-----TRKGQVKLCDFGVSGELVNSLAGTFT----- 164
Query: 1010 LGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNT----- 1063
G MAPE P YS SD W+ G E+ + PF
Sbjct: 165 --GTSFYMAPERIQGKP-------YSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIE 215
Query: 1064 --DYEVNAL-------PQLNTNVPEVMRRLVAKLLENDPSDRPS 1098
Y VN P E + + + LE DP+ RP+
Sbjct: 216 LLSYIVNMPNPELKDEPGNGIKWSEEFKDFIKQCLEKDPTRRPT 259
Score = 40.9 bits (96), Expect = 0.004
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 20/108 (18%)
Query: 1471 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIE 1530
L+G+++L+ + HRD+K NILL Q+ + DFG S + L+ ++
Sbjct: 115 LKGLSYLHSRKIIHRDIKPSNILL-----TRKGQVKLCDFGVSGELVNSLAGTFT----- 164
Query: 1531 LGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPF 1577
G MAPE P YS SD W+ G E+ + PF
Sbjct: 165 --GTSFYMAPERIQGKP-------YSITSDVWSLGLTLLEVAQNRFPF 203
Score = 30.5 bits (69), Expect = 7.1
Identities = 25/97 (25%), Positives = 33/97 (34%), Gaps = 22/97 (22%)
Query: 252 MAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNT-------DYEVN 303
MAPE P YS SD W+ G E+ + PF Y VN
Sbjct: 170 MAPERIQGKP-------YSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVN 222
Query: 304 AL-------PQLNTNVPEVMRRLVAKLLENDPSDRPS 333
P E + + + LE DP+ RP+
Sbjct: 223 MPNPELKDEPGNGIKWSEEFKDFIKQCLEKDPTRRPT 259
Score = 30.5 bits (69), Expect = 7.1
Identities = 25/97 (25%), Positives = 33/97 (34%), Gaps = 22/97 (22%)
Query: 693 MAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNT-------DYEVN 744
MAPE P YS SD W+ G E+ + PF Y VN
Sbjct: 170 MAPERIQGKP-------YSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVN 222
Query: 745 AL-------PQLNTNVPEVMRRLVAKLLENDPSDRPS 774
P E + + + LE DP+ RP+
Sbjct: 223 MPNPELKDEPGNGIKWSEEFKDFIKQCLEKDPTRRPT 259
>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase,
Cyclin-Dependent protein Kinase 10. Serine/Threonine
Kinases (STKs), Cyclin-dependent protein Kinase 10
(CDK10) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CDK10 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDK10, also called
PISSLRE, is essential for cell growth and proliferation,
and acts through the G2/M phase of the cell cycle. CDK10
has also been identified as an important factor in
endocrine therapy resistance in breast cancer. CDK10
silencing increases the transcription of c-RAF and the
activation of the p42/p44 MAPK pathway, which leads to
antiestrogen resistance. Patients who express low levels
of CDK10 relapse early on tamoxifen.
Length = 309
Score = 49.3 bits (118), Expect = 1e-05
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 23/143 (16%)
Query: 914 SLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL 973
S+F++M+ DL + L S + L QLL G+ +L+ + HRDLK N+LL
Sbjct: 82 SIFLVMEYCEQDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLL 141
Query: 974 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPGLFS 1030
D C L I DF GL+ Y + V + APE+ L
Sbjct: 142 T---DKGC--LKIADF--------GLARTYGLPAKPMTPKVVTLWYRAPEL------LLG 182
Query: 1031 FVNYSKS-DAWTAGTVAYEIFGH 1052
Y+ + D W G + E+ H
Sbjct: 183 CTTYTTAIDMWAVGCILAELLAH 205
Score = 49.3 bits (118), Expect = 1e-05
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 23/143 (16%)
Query: 1435 SLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL 1494
S+F++M+ DL + L S + L QLL G+ +L+ + HRDLK N+LL
Sbjct: 82 SIFLVMEYCEQDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLL 141
Query: 1495 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPGLFS 1551
D C L I DF GL+ Y + V + APE+ L
Sbjct: 142 T---DKGC--LKIADF--------GLARTYGLPAKPMTPKVVTLWYRAPEL------LLG 182
Query: 1552 FVNYSKS-DAWTAGTVAYEIFGH 1573
Y+ + D W G + E+ H
Sbjct: 183 CTTYTTAIDMWAVGCILAELLAH 205
>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein
Kinase, Mitogen-Activated Protein Kinase Kinase. Protein
kinases (PKs), MAP kinase kinase (MAPKK) subfamily,
catalytic (c) domain. PKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine or
tyrosine residues on protein substrates. The MAPKK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein serine/threonine
kinases, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The mitogen-activated protein
(MAP) kinase signaling pathways are important mediators
of cellular responses to extracellular signals. The
pathways involve a triple kinase core cascade comprising
the MAP kinase (MAPK), which is phosphorylated and
activated by a MAPK kinase (MAPKK or MKK or MAP2K), which
itself is phosphorylated and activated by a MAPK kinase
kinase (MAPKKK or MKKK or MAP3K). MAPKKs are
dual-specificity PKs that phosphorylate their downstream
targets, MAPKs, at specific threonine and tyrosine
residues. There are three MAPK subfamilies: extracellular
signal-regulated kinase (ERK), c-Jun N-terminal kinase
(JNK), and p38. In mammalian cells, there are seven
MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily
can be activated by at least two cognate MAPKKs and by
multiple MAPKKKs.
Length = 265
Score = 48.9 bits (117), Expect = 1e-05
Identities = 56/212 (26%), Positives = 84/212 (39%), Gaps = 43/212 (20%)
Query: 907 GGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHERIL--LFTQLLEGVTHL-NMHRTA 962
G + N + I M+ + L L+E Q + ERIL + +L+G+T+L H+
Sbjct: 66 GAFYNNGDISICMEYMDGGSLDKILKE--VQGRIPERILGKIAVAVLKGLTYLHEKHKII 123
Query: 963 HRDLKSDNILLDCSEDNTCPQLVITDFGSS--YTNKSGLSMQYSSADIELGGNVALMAPE 1020
HRD+K NIL+ N+ Q+ + DFG S N S+ + G + MAPE
Sbjct: 124 HRDVKPSNILV-----NSRGQIKLCDFGVSGQLVN----SLAKTFV-----GTSSYMAPE 169
Query: 1021 VALATPGLFSFVNYS-KSDAWTAGTVAYEI-----------FGHDNPFYQSARNTDYEVN 1068
+YS KSD W+ G E+ D F +
Sbjct: 170 RIQGN-------DYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNEPPP 222
Query: 1069 ALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 1100
LP + + V L DP +RPS +
Sbjct: 223 RLP--SGKFSPDFQDFVNLCLIKDPRERPSYK 252
Score = 42.7 bits (101), Expect = 0.001
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 30/150 (20%)
Query: 1428 GGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHERIL--LFTQLLEGVTHL-NMHRTA 1483
G + N + I M+ + L L+E Q + ERIL + +L+G+T+L H+
Sbjct: 66 GAFYNNGDISICMEYMDGGSLDKILKE--VQGRIPERILGKIAVAVLKGLTYLHEKHKII 123
Query: 1484 HRDLKSDNILLDCSEDNTCPQLVITDFGSS--YTNKSGLSMQYSSADIELGGNVALMAPE 1541
HRD+K NIL+ N+ Q+ + DFG S N S+ + G + MAPE
Sbjct: 124 HRDVKPSNILV-----NSRGQIKLCDFGVSGQLVN----SLAKTFV-----GTSSYMAPE 169
Query: 1542 VALATPGLFSFVNYS-KSDAWTAGTVAYEI 1570
+YS KSD W+ G E+
Sbjct: 170 RIQGN-------DYSVKSDIWSLGLSLIEL 192
>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase,
Extracellular signal-Regulated Kinase 5.
Serine/Threonine Kinases (STKs), Extracellular
signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ERK5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. ERK5, also called Big MAPK1 (BMK1)
or MAPK7, has a unique C-terminal extension, making it
approximately twice as big as other MAPKs. This extension
contains transcriptional activation capability which is
inhibited by the N-terminal half. ERK5 is activated in
response to growth factors and stress by a cascade that
leads to its phosphorylation by the MAP2K MEK5, which in
turn is regulated by the MAP3Ks MEKK2 and MEKK3.
Activated ERK5 phosphorylates its targets including
myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK.
It plays a role in EGF-induced cell proliferation during
the G1/S phase transition. Studies on knockout mice
revealed that ERK5 is essential for cardiovascular
development and plays an important role in angiogenesis.
It is also critical for neural differentiation and
survival. The ERK5 pathway has been implicated in the
pathogenesis of many diseases including cancer, cardiac
hypertrophy, and atherosclerosis.
Length = 334
Score = 49.2 bits (118), Expect = 1e-05
Identities = 64/264 (24%), Positives = 103/264 (39%), Gaps = 67/264 (25%)
Query: 1424 LNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERILLFT-QLLEGVTHLNMHRT 1482
L P G ++ ++++M +DL + + Q E I F QLL G+ +++
Sbjct: 73 LRPPGADFKD--VYVVMDLMESDLHHIIH--SDQPLTEEHIRYFLYQLLRGLKYIHSANV 128
Query: 1483 AHRDLKSDNILL--DCSEDNTCPQLVITDFG------SSYTNKSGLSMQYSSADIELGGN 1534
HRDLK N+L+ DC L I DFG SS T +Y
Sbjct: 129 IHRDLKPSNLLVNEDCE-------LRIGDFGMARGLSSSPTEHKYFMTEY---------- 171
Query: 1535 VALM---APEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYWHRK 1590
VA APE+ L S Y+ + D W+ G + E+ G R + +
Sbjct: 172 VATRWYRAPEL------LLSLPEYTTAIDMWSVGCIFAEMLG---------RRQLFPGKN 216
Query: 1591 WLWQ-HLVYSHSSTTPSTVAYEIFGHDNPFYQSARNTDYEVNALPQ-----LNTNVPEV- 1643
++ Q L+ S + V I S R Y + LP+ + P+
Sbjct: 217 YVHQLKLILSVLGSPSEEVLNRI--------GSDRVRKY-IQNLPRKQPVPWSKIFPKAS 267
Query: 1644 --MRRLVAKLLENDPSDRPSAELA 1665
L++++L+ DP +R + E A
Sbjct: 268 PEALDLLSQMLQFDPEERITVEQA 291
Score = 47.3 bits (113), Expect = 5e-05
Identities = 60/247 (24%), Positives = 94/247 (38%), Gaps = 75/247 (30%)
Query: 903 LNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERILLFT-QLLEGVTHLNMHRT 961
L P G ++ ++++M +DL + + Q E I F QLL G+ +++
Sbjct: 73 LRPPGADFKD--VYVVMDLMESDLHHIIH--SDQPLTEEHIRYFLYQLLRGLKYIHSANV 128
Query: 962 AHRDLKSDNILL--DCSEDNTCPQLVITDFG------SSYTNKSGLSMQYSSADIELGGN 1013
HRDLK N+L+ DC L I DFG SS T +Y
Sbjct: 129 IHRDLKPSNLLVNEDCE-------LRIGDFGMARGLSSSPTEHKYFMTEY---------- 171
Query: 1014 VALM---APEVALATPGLFSFVNYSKS-DAWTAGTVAYE------IFGHDNPFYQ----- 1058
VA APE+ L S Y+ + D W+ G + E +F N +Q
Sbjct: 172 VATRWYRAPEL------LLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLIL 225
Query: 1059 ---------------SARNTDYEVNALPQ-----LNTNVPEV---MRRLVAKLLENDPSD 1095
S R Y + LP+ + P+ L++++L+ DP +
Sbjct: 226 SVLGSPSEEVLNRIGSDRVRKY-IQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEE 284
Query: 1096 RPSAELA 1102
R + E A
Sbjct: 285 RITVEQA 291
>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-2 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-2 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-2 is
specifically expressed in neurons in the central nervous
system, mainly in terminally differentiated neurons. It
associates with Trap (Tudor repeat associator with
PCTAIRE-2) and could play a role in regulating
mitochondrial function in neurons.
Length = 309
Score = 48.8 bits (116), Expect = 1e-05
Identities = 60/233 (25%), Positives = 102/233 (43%), Gaps = 29/233 (12%)
Query: 1435 SLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL 1494
SL ++ + + DL+ Y+ + +SMH + Q+L G+ + + + HRDLK N+L+
Sbjct: 78 SLTLVFEYLDKDLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRRKVLHRDLKPQNLLI 137
Query: 1495 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 1554
N +L + DFG + KS + YS+ + L P+V L +
Sbjct: 138 -----NERGELKLADFGLARA-KSVPTKTYSNEVVTLW----YRPPDVLLGSS------E 181
Query: 1555 YSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYWHRKWLWQHLVYSHSSTTPSTVAYEIF 1613
YS D W G + +E+ P + + D H +++ L T P + + F
Sbjct: 182 YSTQIDMWGVGCIFFEM-ASGRPLFPGSTVEDELH--LIFRLLGTPTEETWPGISSNDEF 238
Query: 1614 GHDN-PFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 1665
+ N P Y+ +N P+L+T E L+ K L+ + R SAE A
Sbjct: 239 KNYNFPKYKPQP----LINHAPRLDTEGIE----LLTKFLQYESKKRISAEEA 283
Score = 46.1 bits (109), Expect = 1e-04
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 17/137 (12%)
Query: 914 SLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL 973
SL ++ + + DL+ Y+ + +SMH + Q+L G+ + + + HRDLK N+L+
Sbjct: 78 SLTLVFEYLDKDLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRRKVLHRDLKPQNLLI 137
Query: 974 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 1033
N +L + DFG + KS + YS+ + L P+V L +
Sbjct: 138 -----NERGELKLADFGLARA-KSVPTKTYSNEVVTLW----YRPPDVLLGSS------E 181
Query: 1034 YSKS-DAWTAGTVAYEI 1049
YS D W G + +E+
Sbjct: 182 YSTQIDMWGVGCIFFEM 198
>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase,
c-Jun N-terminal Kinase 1. Serine/Threonine Kinases
(STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The JNK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. JNKs are
mitogen-activated protein kinases (MAPKs) that are
involved in many stress-activated responses including
those during inflammation, neurodegeneration, apoptosis,
and persistent pain sensitization, among others.
Vetebrates harbor three different JNK genes (Jnk1, Jnk2,
and Jnk3). JNK1, like JNK2, is expressed in every cell
and tissue type. Initially it was thought that JNK1 and
JNK2 were functionally redundant as mice deficient in
either genes (Jnk1 or Jnk2) could survive but disruption
of both genes resulted in lethality. However, recent
studies have shown that JNK1 and JNK2 perform distinct
functions through specific binding partners and
substrates. JNK1 specifically binds with JAMP
(JNK1-associated membrane protein), which regulates the
duration of JNK1 activity in response to stimuli.
Specific JNK1 substrates include Itch and SG10, which are
implicated in Th2 responses and airway inflammation, and
microtubule dynamics and axodendritic length,
respectively. Mice deficient in Jnk1 are protected
against arthritis, obesity, type 2 diabetes, cardiac cell
death, and non-alcoholic liver disease, suggesting that
JNK1 may play roles in the pathogenesis of these
diseases.
Length = 364
Score = 49.3 bits (117), Expect = 1e-05
Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 44/192 (22%)
Query: 915 LFILMKKYNTDLRNYLRERCAQLSM---HERI-LLFTQLLEGVTHLNMHRTAHRDLKSDN 970
++I+M+ + +L C + M HER+ L Q+L G+ HL+ HRDLK N
Sbjct: 104 VYIVMELMDANL-------CQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSN 156
Query: 971 ILL--DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA---LAT 1025
I++ DC+ L I DFG + T G +M P V
Sbjct: 157 IVVKSDCT-------LKILDFGLART----------------AGTSFMMTPYVVTRYYRA 193
Query: 1026 PGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRL 1084
P + + Y ++ D W+ G + E+ + + D + QL T PE M++L
Sbjct: 194 PEVILGMGYKENVDIWSVGCIMGEMIKG-GVLFPGTDHIDQWNKVIEQLGTPCPEFMKKL 252
Query: 1085 ---VAKLLENDP 1093
V +EN P
Sbjct: 253 QPTVRTYVENRP 264
Score = 41.2 bits (96), Expect = 0.004
Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 41/164 (25%)
Query: 1436 LFILMKKYNTDLRNYLRERCAQLSM---HERI-LLFTQLLEGVTHLNMHRTAHRDLKSDN 1491
++I+M+ + +L C + M HER+ L Q+L G+ HL+ HRDLK N
Sbjct: 104 VYIVMELMDANL-------CQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSN 156
Query: 1492 ILL--DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA---LAT 1546
I++ DC+ L I DFG + T G +M P V
Sbjct: 157 IVVKSDCT-------LKILDFGLART----------------AGTSFMMTPYVVTRYYRA 193
Query: 1547 PGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYWHR 1589
P + + Y ++ D W+ G + E+ + + D W++
Sbjct: 194 PEVILGMGYKENVDIWSVGCIMGEMIKG-GVLFPGTDHIDQWNK 236
>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine
Kinase, Never In Mitosis gene A-related kinase 1.
Serine/Threonine Kinases (STKs), Never In Mitosis gene A
(NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek1 subfamily is one
of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part of
a larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek1 is associated
with centrosomes throughout the cell cycle. It is
involved in the formation of primary cilium and in the
maintenance of centrosomes. It cycles through the nucleus
and may be capable of relaying signals between the cilium
and the nucleus. Nek1 is implicated in the development of
polycystic kidney disease, which is characterized by
benign polycystic tumors formed by abnormal overgrowth of
renal epithelial cells. It appears also to be involved in
DNA damage response, and may be important for both
correct DNA damage checkpoint activation and DNA repair.
Length = 256
Score = 48.3 bits (115), Expect = 1e-05
Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 25/159 (15%)
Query: 946 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 1005
F Q+ + H++ + HRD+KS NI L ++D T + + DFG + S +++ +
Sbjct: 107 FVQICLALKHVHDRKILHRDIKSQNIFL--TKDGT---IKLGDFGIARVLNS--TVELAR 159
Query: 1006 ADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAGTVAYEIFGHDNPFYQSARNTD 1064
I G ++PE+ P Y +KSD W G V YE+ + F A N
Sbjct: 160 TCI---GTPYYLSPEICENRP-------YNNKSDIWALGCVLYEMCTLKHAF--EAGNMK 207
Query: 1065 YEV-----NALPQLNTNVPEVMRRLVAKLLENDPSDRPS 1098
V + P ++++ +R LV++L + +P DRPS
Sbjct: 208 NLVLKIIRGSYPPVSSHYSYDLRNLVSQLFKRNPRDRPS 246
Score = 37.5 bits (87), Expect = 0.037
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 18/105 (17%)
Query: 1467 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 1526
F Q+ + H++ + HRD+KS NI L ++D T + + DFG + S +++ +
Sbjct: 107 FVQICLALKHVHDRKILHRDIKSQNIFL--TKDGT---IKLGDFGIARVLNS--TVELAR 159
Query: 1527 ADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAGTVAYEI 1570
I G ++PE+ P Y +KSD W G V YE+
Sbjct: 160 TCI---GTPYYLSPEICENRP-------YNNKSDIWALGCVLYEM 194
Score = 34.0 bits (78), Expect = 0.53
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 270 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV-----NALPQLNTNVPEVMRRLVAKLL 324
+KSD W G V YE+ + F A N V + P ++++ +R LV++L
Sbjct: 180 NKSDIWALGCVLYEMCTLKHAF--EAGNMKNLVLKIIRGSYPPVSSHYSYDLRNLVSQLF 237
Query: 325 ENDPSDRPS 333
+ +P DRPS
Sbjct: 238 KRNPRDRPS 246
Score = 34.0 bits (78), Expect = 0.53
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 711 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV-----NALPQLNTNVPEVMRRLVAKLL 765
+KSD W G V YE+ + F A N V + P ++++ +R LV++L
Sbjct: 180 NKSDIWALGCVLYEMCTLKHAF--EAGNMKNLVLKIIRGSYPPVSSHYSYDLRNLVSQLF 237
Query: 766 ENDPSDRPS 774
+ +P DRPS
Sbjct: 238 KRNPRDRPS 246
>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine
Kinases, Lymphocyte-specific kinase and Blk. Protein
Tyrosine Kinase (PTK) family; Lck and Blk kinases;
catalytic (c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates. Lck
(lymphocyte-specific kinase) and Blk are members of the
Src subfamily of proteins, which are cytoplasmic (or
non-receptor) tyr kinases. Src kinases contain an
N-terminal SH4 domain with a myristoylation site,
followed by SH3 and SH2 domains, a tyr kinase domain, and
a regulatory C-terminal region containing a conserved
tyr. They are activated by autophosphorylation at the tyr
kinase domain, but are negatively regulated by
phosphorylation at the C-terminal tyr by Csk (C-terminal
Src Kinase). Src proteins are involved in signaling
pathways that regulate cytokine and growth factor
responses, cytoskeleton dynamics, cell proliferation,
survival, and differentiation. Lck is expressed in
T-cells and natural killer (NK) cells. It plays a
critical role in T-cell maturation, activation, and
T-cell receptor (TCR) signaling. Lck phosphorylates ITAM
(immunoreceptor tyr activation motif) sequences on
several subunits of TCRs, leading to the activation of
different second messenger cascades. Phosphorylated ITAMs
serve as binding sites for other signaling factor such as
Syk and ZAP-70, leading to their activation and
propagation of downstream events. In addition, Lck
regulates drug-induced apoptosis by interfering with the
mitochondrial death pathway. The apototic role of Lck is
independent of its primary function in T-cell signaling.
Blk is expressed specifically in B-cells. It is involved
in pre-BCR (B-cell receptor) signaling.
Length = 260
Score = 48.3 bits (115), Expect = 1e-05
Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 36/196 (18%)
Query: 923 NTDLRNYLR-ERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTC 981
N L ++L+ +L++++ I + Q+ EG+ + HRDL++ NIL+ SE C
Sbjct: 84 NGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANILV--SETLCC 141
Query: 982 PQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 1034
I DFG + YT + G + APE G F+
Sbjct: 142 K---IADFGLARLIEDNEYTAREGAKFP-----------IKWTAPEA--INYGTFTI--- 182
Query: 1035 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVN-----ALPQLNTNVPEVMRRLVAKLL 1089
KSD W+ G + EI + Y N + N +P+ + N PE + L+
Sbjct: 183 -KSDVWSFGILLTEIVTYGRIPYPGMTNPEVIQNLERGYRMPRPD-NCPEELYELMRLCW 240
Query: 1090 ENDPSDRPSAELAATV 1105
+ P +RP+ E +V
Sbjct: 241 KEKPEERPTFEYLRSV 256
Score = 39.8 bits (93), Expect = 0.007
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 30/148 (20%)
Query: 1444 NTDLRNYLR-ERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTC 1502
N L ++L+ +L++++ I + Q+ EG+ + HRDL++ NIL+ SE C
Sbjct: 84 NGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANILV--SETLCC 141
Query: 1503 PQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 1555
I DFG + YT + G + APE G F+
Sbjct: 142 K---IADFGLARLIEDNEYTAREGAKFP-----------IKWTAPEA--INYGTFTI--- 182
Query: 1556 SKSDAWTAGTVAYEIFGHDNPFYQSARN 1583
KSD W+ G + EI + Y N
Sbjct: 183 -KSDVWSFGILLTEIVTYGRIPYPGMTN 209
>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine
Kinase, Never In Mitosis gene A-related kinase 7.
Serine/Threonine Kinases (STKs), Never In Mitosis gene A
(NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek7 subfamily is one
of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part of
a larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek7 is required
for mitotic spindle formation and cytokinesis. It is
enriched in the centrosome and is critical for
microtubule nucleation. Nek7 is activated by Nek9 during
mitosis, and may regulate the p70 ribosomal S6 kinase.
Length = 267
Score = 48.1 bits (114), Expect = 2e-05
Identities = 45/162 (27%), Positives = 67/162 (41%), Gaps = 30/162 (18%)
Query: 946 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 1005
F QL + H++ R HRD+K N+ + + L + F SS T +
Sbjct: 112 FVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKT----------T 161
Query: 1006 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARN--- 1062
A L G M+PE + G ++F KSD W+ G + YE+ +PFY N
Sbjct: 162 AAHSLVGTPYYMSPE-RIHENG-YNF----KSDIWSLGCLLYEMAALQSPFYGDKMNLYS 215
Query: 1063 -------TDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP 1097
DY P + + E +R+LV + DP RP
Sbjct: 216 LCKKIEQCDYP----PLPSDHYSEELRQLVNMCINPDPEKRP 253
Score = 41.9 bits (98), Expect = 0.002
Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 16/117 (13%)
Query: 1467 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 1526
F QL + H++ R HRD+K N+ + + L + F SS T +
Sbjct: 112 FVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKT----------T 161
Query: 1527 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARN 1583
A L G M+PE + G ++F KSD W+ G + YE+ +PFY N
Sbjct: 162 AAHSLVGTPYYMSPE-RIHENG-YNF----KSDIWSLGCLLYEMAALQSPFYGDKMN 212
Score = 34.2 bits (78), Expect = 0.48
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 14/72 (19%)
Query: 271 KSDAWTAGTVAYEIFGHDNPFYQSARN----------TDYEVNALPQLNTNVPEVMRRLV 320
KSD W+ G + YE+ +PFY N DY P + + E +R+LV
Sbjct: 186 KSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYP----PLPSDHYSEELRQLV 241
Query: 321 AKLLENDPSDRP 332
+ DP RP
Sbjct: 242 NMCINPDPEKRP 253
Score = 34.2 bits (78), Expect = 0.48
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 14/72 (19%)
Query: 712 KSDAWTAGTVAYEIFGHDNPFYQSARN----------TDYEVNALPQLNTNVPEVMRRLV 761
KSD W+ G + YE+ +PFY N DY P + + E +R+LV
Sbjct: 186 KSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYP----PLPSDHYSEELRQLV 241
Query: 762 AKLLENDPSDRP 773
+ DP RP
Sbjct: 242 NMCINPDPEKRP 253
>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control
protein 7-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), (Cdc7)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Cdc7-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. Members of
this subfamily include Schizosaccharomyces pombe Cdc7,
Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana
mitogen-activated protein kinase (MAPK) kinase kinase
(MAPKKK) epsilon, and related proteins. MAPKKKs
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
Fission yeast Cdc7 is essential for cell division by
playing a key role in the initiation of septum formation
and cytokinesis. Budding yeast Cdc15 functions to
coordinate mitotic exit with cytokinesis. Arabidopsis
MAPKKK epsilon is required for pollen development in the
plasma membrane.
Length = 254
Score = 47.6 bits (114), Expect = 2e-05
Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 41/200 (20%)
Query: 909 YGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKS 968
Y N SL ++KK+ + Q+L+G+ +L+ HRD+K+
Sbjct: 80 YAENGSLRQIIKKFGP------------FPESLVAVYVYQVLQGLAYLHEQGVIHRDIKA 127
Query: 969 DNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL 1028
NIL ++D + DFG + T + +S D + G MAPEV +
Sbjct: 128 ANILT--TKDGVVK---LADFGVA-TKLNDVSKD----DASVVGTPYWMAPEVIEMSGA- 176
Query: 1029 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL--------PQLNTNVPEV 1080
+ SD W+ G E+ + P+Y N + AL P L +
Sbjct: 177 -----STASDIWSLGCTVIELLTGNPPYYD--LNP---MAALFRIVQDDHPPLPEGISPE 226
Query: 1081 MRRLVAKLLENDPSDRPSAE 1100
++ + + + DP+ RP+A+
Sbjct: 227 LKDFLMQCFQKDPNLRPTAK 246
Score = 43.8 bits (104), Expect = 4e-04
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 28/149 (18%)
Query: 1430 YGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKS 1489
Y N SL ++KK+ + Q+L+G+ +L+ HRD+K+
Sbjct: 80 YAENGSLRQIIKKFGP------------FPESLVAVYVYQVLQGLAYLHEQGVIHRDIKA 127
Query: 1490 DNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL 1549
NIL ++D + DFG + T + +S D + G MAPEV +
Sbjct: 128 ANILT--TKDGVVK---LADFGVA-TKLNDVSKD----DASVVGTPYWMAPEVIEMSGA- 176
Query: 1550 FSFVNYSKSDAWTAGTVAYEIFGHDNPFY 1578
+ SD W+ G E+ + P+Y
Sbjct: 177 -----STASDIWSLGCTVIELLTGNPPYY 200
>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Src kinase subfamily; catalytic (c) domain. Src subfamily
members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk,
and Yes. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases such
as protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Src (or
c-Src) proteins are cytoplasmic (or non-receptor) tyr
kinases which are anchored to the plasma membrane. They
contain an N-terminal SH4 domain with a myristoylation
site, followed by SH3 and SH2 domains, a tyr kinase
domain, and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated by
phosphorylation at the C-terminal tyr by Csk (C-terminal
Src Kinase). Src proteins are involved in signaling
pathways that regulate cytokine and growth factor
responses, cytoskeleton dynamics, cell proliferation,
survival, and differentiation. They were identified as
the first proto-oncogene products, and they regulate cell
adhesion, invasion, and motility in cancer cells and
tumor vasculature, contributing to cancer progression and
metastasis. Src kinases are overexpressed in a variety of
human cancers, making them attractive targets for
therapy. They are also implicated in acute inflammatory
responses and osteoclast function. Src, Fyn, Yes, and Yrk
are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn
show a limited expression pattern.
Length = 261
Score = 47.3 bits (113), Expect = 3e-05
Identities = 53/199 (26%), Positives = 81/199 (40%), Gaps = 44/199 (22%)
Query: 918 LMKKYNTDLRNYLRE-RCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 976
M K + L ++L+ +L + + + + Q+ EG+ +L HRDL + NIL+
Sbjct: 82 YMSKGS--LLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILV--G 137
Query: 977 EDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 1029
E+ C I DFG YT + G + APE A G F
Sbjct: 138 ENLVCK---IADFGLARLIEDDEYTAREGAKFP-----------IKWTAPEAANY--GRF 181
Query: 1030 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLN--------TNVPEVM 1081
+ KSD W+ G + EI + Y N EV L Q+ N PE +
Sbjct: 182 TI----KSDVWSFGILLTEIVTYGRVPYPGMTNR--EV--LEQVERGYRMPRPPNCPEEL 233
Query: 1082 RRLVAKLLENDPSDRPSAE 1100
L+ + + DP +RP+ E
Sbjct: 234 YDLMLQCWDKDPEERPTFE 252
Score = 44.2 bits (105), Expect = 3e-04
Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 32/141 (22%)
Query: 1439 LMKKYNTDLRNYLRE-RCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 1497
M K + L ++L+ +L + + + + Q+ EG+ +L HRDL + NIL+
Sbjct: 82 YMSKGS--LLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILV--G 137
Query: 1498 EDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 1550
E+ C I DFG YT + G + APE A G F
Sbjct: 138 ENLVCK---IADFGLARLIEDDEYTAREGAKFP-----------IKWTAPEAANY--GRF 181
Query: 1551 SFVNYSKSDAWTAGTVAYEIF 1571
+ KSD W+ G + EI
Sbjct: 182 TI----KSDVWSFGILLTEIV 198
Score = 30.4 bits (69), Expect = 8.4
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 18/91 (19%)
Query: 253 APEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLN--- 309
APE A G F+ KSD W+ G + EI + Y N EV L Q+
Sbjct: 172 APEAANY--GRFTI----KSDVWSFGILLTEIVTYGRVPYPGMTNR--EV--LEQVERGY 221
Query: 310 -----TNVPEVMRRLVAKLLENDPSDRPSAE 335
N PE + L+ + + DP +RP+ E
Sbjct: 222 RMPRPPNCPEELYDLMLQCWDKDPEERPTFE 252
Score = 30.4 bits (69), Expect = 8.4
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 18/91 (19%)
Query: 694 APEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLN--- 750
APE A G F+ KSD W+ G + EI + Y N EV L Q+
Sbjct: 172 APEAANY--GRFTI----KSDVWSFGILLTEIVTYGRVPYPGMTNR--EV--LEQVERGY 221
Query: 751 -----TNVPEVMRRLVAKLLENDPSDRPSAE 776
N PE + L+ + + DP +RP+ E
Sbjct: 222 RMPRPPNCPEELYDLMLQCWDKDPEERPTFE 252
>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein
Serine/Threonine Kinase, Class IIIA myosin.
Serine/threonine kinases (STKs), class IIIA myosin
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins containing an N-terminal kinase catalytic domain
and a C-terminal actin-binding domain. Class III myosins
may play an important role in maintaining the structural
integrity of photoreceptor cell microvilli. In
photoreceptor cells, they may also function as cargo
carriers during light-dependent translocation of proteins
such as transducin and arrestin. Class IIIA myosin is
highly expressed in retina and in inner ear hair cells.
It is localized to the distal ends of actin-bundled
structures. Mutations in human myosin IIIA are
responsible for progressive nonsyndromic hearing loss.
Human myosin IIIA possesses ATPase and kinase activities,
and the ability to move actin filaments in a motility
assay. It may function as a cellular transporter capable
of moving along actin bundles in sensory cells.
Length = 286
Score = 47.3 bits (112), Expect = 3e-05
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 34/175 (19%)
Query: 939 MHERILLFT--QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK 996
M E I+ + + L G+ HL++++T HRD+K +NILL T + + DF
Sbjct: 121 MEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNILL-----TTEGGVKLVDF------- 168
Query: 997 SGLSMQYSSADIELGGNVAL---MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHD 1053
G+S Q +S + +V MAPEV L S + ++ D W+ G A E+ D
Sbjct: 169 -GVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYD-ARCDVWSLGITAIELGDGD 226
Query: 1054 NPFYQSARNTDYEVNALPQLNTNVPEVMRR----------LVAKLLENDPSDRPS 1098
P + + AL ++ N P + + + K L D RP+
Sbjct: 227 PPLADL-----HPMRALFKIPRNPPPTLHQPELWSNEFNDFIRKCLTKDYEKRPT 276
Score = 46.2 bits (109), Expect = 9e-05
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 19/123 (15%)
Query: 1460 MHERILLFT--QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK 1517
M E I+ + + L G+ HL++++T HRD+K +NILL T + + DF
Sbjct: 121 MEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNILL-----TTEGGVKLVDF------- 168
Query: 1518 SGLSMQYSSADIELGGNVAL---MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHD 1574
G+S Q +S + +V MAPEV L S + ++ D W+ G A E+ D
Sbjct: 169 -GVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYD-ARCDVWSLGITAIELGDGD 226
Query: 1575 NPF 1577
P
Sbjct: 227 PPL 229
>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine
Kinase, Vascular Endothelial Growth Factor Receptor 3.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR3 (or Flt4) is a member of the VEGFR subfamily of
proteins, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. In
VEGFR3, the fifth Ig-like domain is replaced by a
disulfide bridge. The binding of VEGFRs to their ligands,
the VEGFs, leads to receptor dimerization, activation,
and intracellular signaling. VEGFR3 preferentially binds
the ligands VEGFC and VEGFD. VEGFR3 is essential for
lymphatic endothelial cell (EC) development and function.
It has been shown to regulate adaptive immunity during
corneal transplantation. VEGFR3 is upregulated on blood
vascular ECs in pathological conditions such as vascular
tumors and the periphery of solid tumors. It plays a role
in cancer progression and lymph node metastasis. Missense
mutations in the VEGFR3 gene are associated with primary
human lymphedema.
Length = 338
Score = 47.7 bits (113), Expect = 4e-05
Identities = 51/176 (28%), Positives = 75/176 (42%), Gaps = 37/176 (21%)
Query: 937 LSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK 996
L+M + I Q+ G+ L + HRDL + NILL SE+N + I DFG +
Sbjct: 171 LTMEDLICYSFQVARGMEFLASRKCIHRDLAARNILL--SENNV---VKICDFGLARD-- 223
Query: 997 SGLSMQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGH 1052
Y D G+ L MAPE +F V ++SD W+ G + +EIF
Sbjct: 224 -----IYKDPDYVRKGSARLPLKWMAPE------SIFDKVYTTQSDVWSFGVLLWEIFSL 272
Query: 1053 ----------DNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS 1098
+ F Q R D P+ T PE+ R++ + DP +RP+
Sbjct: 273 GASPYPGVQINEEFCQ--RLKDGTRMRAPENAT--PEI-YRIMLACWQGDPKERPT 323
Score = 45.8 bits (108), Expect = 1e-04
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 22/118 (18%)
Query: 1458 LSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK 1517
L+M + I Q+ G+ L + HRDL + NILL SE+N + I DFG +
Sbjct: 171 LTMEDLICYSFQVARGMEFLASRKCIHRDLAARNILL--SENNV---VKICDFGLARD-- 223
Query: 1518 SGLSMQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 1571
Y D G+ L MAPE +F V ++SD W+ G + +EIF
Sbjct: 224 -----IYKDPDYVRKGSARLPLKWMAPE------SIFDKVYTTQSDVWSFGVLLWEIF 270
Score = 30.4 bits (68), Expect = 8.3
Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 25/110 (22%)
Query: 238 YSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGH------ 287
Y D G+ L MAPE +F V ++SD W+ G + +EIF
Sbjct: 225 YKDPDYVRKGSARLPLKWMAPE------SIFDKVYTTQSDVWSFGVLLWEIFSLGASPYP 278
Query: 288 ----DNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS 333
+ F Q R D P+ T PE+ R++ + DP +RP+
Sbjct: 279 GVQINEEFCQ--RLKDGTRMRAPENAT--PEI-YRIMLACWQGDPKERPT 323
Score = 30.4 bits (68), Expect = 8.3
Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 25/110 (22%)
Query: 679 YSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGH------ 728
Y D G+ L MAPE +F V ++SD W+ G + +EIF
Sbjct: 225 YKDPDYVRKGSARLPLKWMAPE------SIFDKVYTTQSDVWSFGVLLWEIFSLGASPYP 278
Query: 729 ----DNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS 774
+ F Q R D P+ T PE+ R++ + DP +RP+
Sbjct: 279 GVQINEEFCQ--RLKDGTRMRAPENAT--PEI-YRIMLACWQGDPKERPT 323
>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase,
Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase;
catalytic (c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates. Fer
kinase is a member of the Fes subfamily of proteins which
are cytoplasmic (or nonreceptor) tyr kinases containing
an N-terminal region with FCH (Fes/Fer/CIP4 homology) and
coiled-coil domains, followed by a SH2 domain, and a
C-terminal catalytic domain. Fer kinase is expressed in a
wide variety of tissues, and is found to reside in both
the cytoplasm and the nucleus. It plays important roles
in neuronal polarization and neurite development,
cytoskeletal reorganization, cell migration, growth
factor signaling, and the regulation of cell-cell
interactions mediated by adherens junctions and focal
adhesions. Fer kinase also regulates cell cycle
progression in malignant cells.
Length = 250
Score = 46.9 bits (111), Expect = 4e-05
Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 29/182 (15%)
Query: 925 DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 984
D ++LR++ +L + + G+ +L HRDL + N L+ E+N L
Sbjct: 78 DFLSFLRKKKDELKTKQLVKFALDAAAGMAYLESKNCIHRDLAARNCLV--GENNV---L 132
Query: 985 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAG 1043
I+DFG S G+ YSS+ L + P ++ Y S+SD W+ G
Sbjct: 133 KISDFGMSRQEDDGI---YSSS--------GLKQIPIKWTAPEALNYGRYSSESDVWSYG 181
Query: 1044 TVAYEIF--------GHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSD 1095
+ +E F G N + Y ++ PQ P+ + +++ + + P +
Sbjct: 182 ILLWETFSLGVCPYPGMTNQQAREQVEKGYRMSC-PQ---KCPDDVYKVMQRCWDYKPEN 237
Query: 1096 RP 1097
RP
Sbjct: 238 RP 239
Score = 41.5 bits (97), Expect = 0.002
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 17/127 (13%)
Query: 1446 DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 1505
D ++LR++ +L + + G+ +L HRDL + N L+ E+N L
Sbjct: 78 DFLSFLRKKKDELKTKQLVKFALDAAAGMAYLESKNCIHRDLAARNCLV--GENNV---L 132
Query: 1506 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAG 1564
I+DFG S G+ YSS+ L + P ++ Y S+SD W+ G
Sbjct: 133 KISDFGMSRQEDDGI---YSSS--------GLKQIPIKWTAPEALNYGRYSSESDVWSYG 181
Query: 1565 TVAYEIF 1571
+ +E F
Sbjct: 182 ILLWETF 188
Score = 31.9 bits (72), Expect = 2.4
Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 24/123 (19%)
Query: 219 LVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTA 277
L I+DFG S G+ YSS+ L + P ++ Y S+SD W+
Sbjct: 132 LKISDFGMSRQEDDGI---YSSS--------GLKQIPIKWTAPEALNYGRYSSESDVWSY 180
Query: 278 GTVAYEIF--------GHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPS 329
G + +E F G N + Y ++ PQ P+ + +++ + + P
Sbjct: 181 GILLWETFSLGVCPYPGMTNQQAREQVEKGYRMSC-PQ---KCPDDVYKVMQRCWDYKPE 236
Query: 330 DRP 332
+RP
Sbjct: 237 NRP 239
Score = 31.9 bits (72), Expect = 2.4
Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 24/123 (19%)
Query: 660 LVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTA 718
L I+DFG S G+ YSS+ L + P ++ Y S+SD W+
Sbjct: 132 LKISDFGMSRQEDDGI---YSSS--------GLKQIPIKWTAPEALNYGRYSSESDVWSY 180
Query: 719 GTVAYEIF--------GHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPS 770
G + +E F G N + Y ++ PQ P+ + +++ + + P
Sbjct: 181 GILLWETFSLGVCPYPGMTNQQAREQVEKGYRMSC-PQ---KCPDDVYKVMQRCWDYKPE 236
Query: 771 DRP 773
+RP
Sbjct: 237 NRP 239
>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein
Serine/Threonine Kinase, Class IIIB myosin.
Serine/threonine kinases (STKs), class IIIB myosin
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins containing an N-terminal kinase catalytic domain
and a C-terminal actin-binding domain. Class III myosins
may play an important role in maintaining the structural
integrity of photoreceptor cell microvilli. They may also
function as cargo carriers during light-dependent
translocation, in photoreceptor cells, of proteins such
as transducin and arrestin. Class IIIB myosin is
expressed highly in retina. It is also present in the
brain and testis. The human class IIIB myosin gene maps
to a region that overlaps the locus for Bardet-Biedl
syndrome, which is characterized by dysmorphic
extremities, retinal dystrophy, obesity, male
hypogenitalism, and renal abnormalities.
Length = 291
Score = 47.3 bits (112), Expect = 4e-05
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 33/168 (19%)
Query: 944 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY 1003
+L+ LL G+ HL+ +R HRD+K +NILL T + + DF G+S Q
Sbjct: 133 ILYGALL-GLQHLHNNRIIHRDVKGNNILL-----TTEGGVKLVDF--------GVSAQL 178
Query: 1004 SSADIELGGNVAL---MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSA 1060
+S + +V MAPEV +A + + ++ D W+ G A E+ D P +
Sbjct: 179 TSTRLRRNTSVGTPFWMAPEV-IACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDM- 236
Query: 1061 RNTDYEVNALPQLNTNVPEVMR----------RLVAKLLENDPSDRPS 1098
+ V L ++ N P + +++ L D RPS
Sbjct: 237 ----HPVKTLFKIPRNPPPTLLHPEKWCRSFNHFISQCLIKDFEARPS 280
Score = 45.8 bits (108), Expect = 1e-04
Identities = 74/289 (25%), Positives = 118/289 (40%), Gaps = 75/289 (25%)
Query: 1302 LVQVETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAIL 1361
++ +E+L D D +I + I KGT VY+ T N
Sbjct: 11 MLGLESLGD----PTDTWEIIETIGKGTYGKVYKVT------------------NKKDGS 48
Query: 1362 KAMSKELLPLRKPLRLNEDMLM--NSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSA 1419
A K L P+ ++E++ N +++LP HPNVV + F Y +
Sbjct: 49 LAAVKILDPISD---VDEEIEAEYNILQSLPNHPNVVKFYGMF-------------YKAD 92
Query: 1420 LPARLNPTGGYGRNMSLFILMKKYN----TDLRNYLRERCAQLSMHERI--LLFTQLLEG 1473
GG L+++++ N T+L L C Q I +L+ LL G
Sbjct: 93 -----KLVGG-----QLWLVLELCNGGSVTELVKGLL-ICGQRLDEAMISYILYGALL-G 140
Query: 1474 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGG 1533
+ HL+ +R HRD+K +NILL T + + DF G+S Q +S +
Sbjct: 141 LQHLHNNRIIHRDVKGNNILL-----TTEGGVKLVDF--------GVSAQLTSTRLRRNT 187
Query: 1534 NVAL---MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQ 1579
+V MAPEV +A + + ++ D W+ G A E+ D P +
Sbjct: 188 SVGTPFWMAPEV-IACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFD 235
>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine
Kinases, Vascular Endothelial Growth Factor Receptors.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor (VEGFR) subfamily;
catalytic (c) domain. The VEGFR subfamily consists of
VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar
proteins. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases such
as protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. VEGFR
subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. In
VEGFR3, the fifth Ig-like domain is replaced by a
disulfide bridge. The binding of VEGFRs to their ligands,
the VEGFs, leads to receptor dimerization, activation,
and intracellular signaling. There are five VEGF ligands
in mammals, which bind, in an overlapping pattern to the
three VEGFRs, which can form homo or heterodimers. VEGFRs
regulate the cardiovascular system. They are critical for
vascular development during embryogenesis and blood
vessel formation in adults. They induce cellular
functions common to other growth factor receptors such as
cell migration, survival, and proliferation. VEGFR1 binds
VEGFA, VEGFB, and placenta growth factor (PLGF). It
regulates monocyte and macrophage migration, vascular
permeability, haematopoiesis, and the recruitment of
haematopietic progenitor cells from the bone marrow.
Length = 337
Score = 47.5 bits (113), Expect = 4e-05
Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 33/175 (18%)
Query: 936 QLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN 995
L++ + I Q+ G+ L + HRDL + NILL SE+N + I DFG +
Sbjct: 169 PLTLEDLISYSFQVARGMEFLASRKCIHRDLAARNILL--SENNV---VKICDFGLARD- 222
Query: 996 KSGLSMQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG 1051
Y D G+ L MAPE +F V ++SD W+ G + +EIF
Sbjct: 223 ------IYKDPDYVRKGDARLPLKWMAPE------SIFDKVYTTQSDVWSFGVLLWEIFS 270
Query: 1052 HDNPFYQSARNTDYEVNAL--------PQLNTNVPEVMRRLVAKLLENDPSDRPS 1098
Y + + L P+ T PE+ ++ N+P DRP+
Sbjct: 271 LGASPYPGVQIDEEFCRRLKEGTRMRAPEYAT--PEIYSIMLD-CWHNNPEDRPT 322
Score = 44.5 bits (105), Expect = 3e-04
Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 22/119 (18%)
Query: 1457 QLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN 1516
L++ + I Q+ G+ L + HRDL + NILL SE+N + I DFG +
Sbjct: 169 PLTLEDLISYSFQVARGMEFLASRKCIHRDLAARNILL--SENNV---VKICDFGLARD- 222
Query: 1517 KSGLSMQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 1571
Y D G+ L MAPE +F V ++SD W+ G + +EIF
Sbjct: 223 ------IYKDPDYVRKGDARLPLKWMAPE------SIFDKVYTTQSDVWSFGVLLWEIF 269
Score = 32.1 bits (73), Expect = 2.9
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 17/90 (18%)
Query: 252 MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL------ 305
MAPE +F V ++SD W+ G + +EIF Y + + L
Sbjct: 242 MAPE------SIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDEEFCRRLKEGTRM 295
Query: 306 --PQLNTNVPEVMRRLVAKLLENDPSDRPS 333
P+ T PE+ ++ N+P DRP+
Sbjct: 296 RAPEYAT--PEIYSIMLD-CWHNNPEDRPT 322
Score = 32.1 bits (73), Expect = 2.9
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 17/90 (18%)
Query: 693 MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL------ 746
MAPE +F V ++SD W+ G + +EIF Y + + L
Sbjct: 242 MAPE------SIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDEEFCRRLKEGTRM 295
Query: 747 --PQLNTNVPEVMRRLVAKLLENDPSDRPS 774
P+ T PE+ ++ N+P DRP+
Sbjct: 296 RAPEYAT--PEIYSIMLD-CWHNNPEDRPT 322
>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine
Kinase, Never In Mitosis gene A-related kinase 10.
Serine/Threonine Kinases (STKs), Never In Mitosis gene A
(NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek10 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part of
a larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. No function has
yet been ascribed to Nek10. The gene encoding Nek10 is a
putative causative gene for breast cancer; it is located
within a breast cancer susceptibility loci on chromosome
3p24.
Length = 269
Score = 47.1 bits (112), Expect = 4e-05
Identities = 57/242 (23%), Positives = 89/242 (36%), Gaps = 66/242 (27%)
Query: 871 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN----TDL 926
HPN+V + F + N L+I+M +
Sbjct: 68 HPNIVRYYKTFLE----------------------------NDRLYIVMDLIEGAPLGEH 99
Query: 927 RNYLRERCAQLSMHERIL-LFTQLLEGVTHLNMH-RTAHRDLKSDNILLDCSEDNTCPQL 984
N L+E+ + + ERI +F Q++ + +L+ R HRDL +NI+L ED+ ++
Sbjct: 100 FNSLKEKKQRFT-EERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIML--GEDD---KV 153
Query: 985 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAG 1043
ITDFG + K S S G + PE+ P Y K+D W G
Sbjct: 154 TITDFGLA-KQKQPESKLTSVV-----GTILYSCPEIVKNEP-------YGEKADVWAFG 200
Query: 1044 TVAYEIFGHDNPFYQSAR--------NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSD 1095
+ Y++ PFY + YE P E + ++ L D
Sbjct: 201 CILYQMCTLQPPFYSTNMLSLATKIVEAVYE----PLPEGMYSEDVTDVITSCLTPDAEA 256
Query: 1096 RP 1097
RP
Sbjct: 257 RP 258
Score = 44.8 bits (106), Expect = 2e-04
Identities = 49/196 (25%), Positives = 78/196 (39%), Gaps = 54/196 (27%)
Query: 1392 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN----TDL 1447
HPN+V + F + N L+I+M +
Sbjct: 68 HPNIVRYYKTFLE----------------------------NDRLYIVMDLIEGAPLGEH 99
Query: 1448 RNYLRERCAQLSMHERIL-LFTQLLEGVTHLNMH-RTAHRDLKSDNILLDCSEDNTCPQL 1505
N L+E+ + + ERI +F Q++ + +L+ R HRDL +NI+L ED+ ++
Sbjct: 100 FNSLKEKKQRFT-EERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIML--GEDD---KV 153
Query: 1506 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAG 1564
ITDFG + K S S G + PE+ P Y K+D W G
Sbjct: 154 TITDFGLA-KQKQPESKLTSVV-----GTILYSCPEIVKNEP-------YGEKADVWAFG 200
Query: 1565 TVAYEIFGHDNPFYQS 1580
+ Y++ PFY +
Sbjct: 201 CILYQMCTLQPPFYST 216
>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase,
Muscle-specific kinase. Protein Tyrosine Kinase (PTK)
family; Muscle-specific kinase (Musk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases such
as protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Musk is a
receptor tyr kinase (RTK) containing an extracellular
region with four immunoglobulin-like domains and a
cysteine-rich cluster, a transmembrane segment, and an
intracellular catalytic domain. Musk is expressed and
concentrated in the postsynaptic membrane in skeletal
muscle. It is essential for the establishment of the
neuromuscular junction (NMJ), a peripheral synapse that
conveys signals from motor neurons to muscle cells.
Agrin, a large proteoglycan released from motor neurons,
stimulates Musk autophosphorylation and activation,
leading to the clustering of acetylcholine receptors
(AChRs). To date, there is no evidence to suggest that
agrin binds directly to Musk. Mutations in AChR, Musk and
other partners are responsible for diseases of the NMJ,
such as the autoimmune syndrome myasthenia gravis.
Length = 288
Score = 46.7 bits (111), Expect = 5e-05
Identities = 56/209 (26%), Positives = 80/209 (38%), Gaps = 57/209 (27%)
Query: 925 DLRNYLRERCA---------------------QLSMHERILLFTQLLEGVTHLNMHRTAH 963
DL +LR R LS E++ + Q+ G+ +L+ + H
Sbjct: 94 DLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKFVH 153
Query: 964 RDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD-IELGGNVAL----MA 1018
RDL + N L+ E+ + I DFG LS SAD + N A+ M
Sbjct: 154 RDLATRNCLV--GENMV---VKIADFG--------LSRNIYSADYYKASENDAIPIRWMP 200
Query: 1019 PEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHD-NPFYQSARNT------DYEVNAL 1070
PE + Y+ +SD W G V +EIF + P+Y A D V +
Sbjct: 201 PESIF-------YNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAHEEVIYYVRDGNVLSC 253
Query: 1071 PQLNTNVPEVMRRLVAKLLENDPSDRPSA 1099
P N P + L+ PSDRPS
Sbjct: 254 PD---NCPLELYNLMRLCWSKLPSDRPSF 279
Score = 40.2 bits (94), Expect = 0.006
Identities = 43/161 (26%), Positives = 64/161 (39%), Gaps = 48/161 (29%)
Query: 1446 DLRNYLRERCA---------------------QLSMHERILLFTQLLEGVTHLNMHRTAH 1484
DL +LR R LS E++ + Q+ G+ +L+ + H
Sbjct: 94 DLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKFVH 153
Query: 1485 RDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD-IELGGNVAL----MA 1539
RDL + N L+ E+ + I DFG LS SAD + N A+ M
Sbjct: 154 RDLATRNCLV--GENMV---VKIADFG--------LSRNIYSADYYKASENDAIPIRWMP 200
Query: 1540 PEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHD-NPFY 1578
PE + Y+ +SD W G V +EIF + P+Y
Sbjct: 201 PESIF-------YNRYTTESDVWAYGVVLWEIFSYGMQPYY 234
Score = 33.7 bits (77), Expect = 0.77
Identities = 38/127 (29%), Positives = 49/127 (38%), Gaps = 31/127 (24%)
Query: 221 ITDFGSSYTNKSGLSMQYSSAD-IELGGNVAL----MAPEVALATPGLFSFVNYS-KSDA 274
I DFG LS SAD + N A+ M PE + Y+ +SD
Sbjct: 171 IADFG--------LSRNIYSADYYKASENDAIPIRWMPPESIF-------YNRYTTESDV 215
Query: 275 WTAGTVAYEIFGHD-NPFYQSARNT------DYEVNALPQLNTNVPEVMRRLVAKLLEND 327
W G V +EIF + P+Y A D V + P N P + L+
Sbjct: 216 WAYGVVLWEIFSYGMQPYYGMAHEEVIYYVRDGNVLSCPD---NCPLELYNLMRLCWSKL 272
Query: 328 PSDRPSA 334
PSDRPS
Sbjct: 273 PSDRPSF 279
Score = 33.7 bits (77), Expect = 0.77
Identities = 38/127 (29%), Positives = 49/127 (38%), Gaps = 31/127 (24%)
Query: 662 ITDFGSSYTNKSGLSMQYSSAD-IELGGNVAL----MAPEVALATPGLFSFVNYS-KSDA 715
I DFG LS SAD + N A+ M PE + Y+ +SD
Sbjct: 171 IADFG--------LSRNIYSADYYKASENDAIPIRWMPPESIF-------YNRYTTESDV 215
Query: 716 WTAGTVAYEIFGHD-NPFYQSARNT------DYEVNALPQLNTNVPEVMRRLVAKLLEND 768
W G V +EIF + P+Y A D V + P N P + L+
Sbjct: 216 WAYGVVLWEIFSYGMQPYYGMAHEEVIYYVRDGNVLSCPD---NCPLELYNLMRLCWSKL 272
Query: 769 PSDRPSA 775
PSDRPS
Sbjct: 273 PSDRPSF 279
>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine
Kinases. Protein Tyrosine Kinase (PTK) family; Axl
subfamily; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). The Axl subfamily consists of Axl, Tyro3 (or
Sky), Mer (or Mertk), and similar proteins. PTKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Axl
subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
two immunoglobulin-like domains followed by two
fibronectin type III repeats, a transmembrane segment,
and an intracellular catalytic domain. Binding to their
ligands, Gas6 and protein S, leads to receptor
dimerization, autophosphorylation, activation, and
intracellular signaling. Axl subfamily members are
implicated in a variety of cellular effects including
survival, proliferation, migration, and phagocytosis.
They are also associated with several types of cancer as
well as inflammatory, autoimmune, vascular, and kidney
diseases. Mer is named after its original reported
expression pattern (monocytes, epithelial, and
reproductive tissues). It is required for the ingestion
of apoptotic cells by phagocytes such as macrophages,
retinal pigment epithelial cells, and dendritic cells.
Mer is also important in maintaining immune homeostasis.
Length = 273
Score = 46.7 bits (111), Expect = 5e-05
Identities = 55/196 (28%), Positives = 80/196 (40%), Gaps = 27/196 (13%)
Query: 913 MSLFILMKKYNTDLRNYL-RERCAQLSMH---ERILLF-TQLLEGVTHLNMHRTAHRDLK 967
M + MK + DL ++L R L + +L F + G+ +L+ HRDL
Sbjct: 83 MVILPFMK--HGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRNFIHRDLA 140
Query: 968 SDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG 1027
+ N +L ED T + + DF GLS + S D G +A M P +A
Sbjct: 141 ARNCMLR--EDMT---VCVADF--------GLSKKIYSGDYYRQGRIAKM-PVKWIAIES 186
Query: 1028 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-YEV----NALPQLNTNVPEVMR 1082
L V SKSD W G +EI Y N + Y+ N L Q + + +
Sbjct: 187 LADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVENHEIYDYLRHGNRLKQ-PEDCLDELY 245
Query: 1083 RLVAKLLENDPSDRPS 1098
L+ DP DRP+
Sbjct: 246 DLMYSCWRADPKDRPT 261
Score = 43.3 bits (102), Expect = 7e-04
Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 21/142 (14%)
Query: 1434 MSLFILMKKYNTDLRNYL-RERCAQLSMH---ERILLF-TQLLEGVTHLNMHRTAHRDLK 1488
M + MK + DL ++L R L + +L F + G+ +L+ HRDL
Sbjct: 83 MVILPFMK--HGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRNFIHRDLA 140
Query: 1489 SDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG 1548
+ N +L ED T + + DF GLS + S D G +A M P +A
Sbjct: 141 ARNCMLR--EDMT---VCVADF--------GLSKKIYSGDYYRQGRIAKM-PVKWIAIES 186
Query: 1549 LFSFVNYSKSDAWTAGTVAYEI 1570
L V SKSD W G +EI
Sbjct: 187 LADRVYTSKSDVWAFGVTMWEI 208
>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of
cAMP-dependent protein kinase-like Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), Fission yeast Suppressor of loss of
cAMP-dependent protein kinase (Sck1)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Sck1-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. This
subfamily is composed of fungal proteins with similarity
to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a
role in trehalase activation triggered by glucose and a
nitrogen source. Trehalase catalyzes the cleavage of the
disaccharide trehalose to glucose. Trehalose, as a
carbohydrate reserve and stress metabolite, plays an
important role in the response of yeast to environmental
changes.
Length = 330
Score = 47.2 bits (112), Expect = 5e-05
Identities = 45/163 (27%), Positives = 70/163 (42%), Gaps = 24/163 (14%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
+L+ + HL+ + +RDLK +NILLD + + + DFG S N + +
Sbjct: 104 ELVLALEHLHKYDIVYRDLKPENILLDATG-----HIALCDFGLSKANLTDNKTTNT--- 155
Query: 1008 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFY-----QSAR 1061
G +APEV L G Y+K D W+ G + +E+ +PFY Q R
Sbjct: 156 --FCGTTEYLAPEVLLDEKG------YTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQMYR 207
Query: 1062 NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT 1104
N + P+ + + R+ V LL +P R A A
Sbjct: 208 NIAFGKVRFPK--NVLSDEGRQFVKGLLNRNPQHRLGAHRDAV 248
Score = 45.3 bits (107), Expect = 2e-04
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 17/111 (15%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
+L+ + HL+ + +RDLK +NILLD + + + DFG S N + +
Sbjct: 104 ELVLALEHLHKYDIVYRDLKPENILLDATG-----HIALCDFGLSKANLTDNKTTNT--- 155
Query: 1529 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFY 1578
G +APEV L G Y+K D W+ G + +E+ +PFY
Sbjct: 156 --FCGTTEYLAPEVLLDEKG------YTKHVDFWSLGVLVFEMCCGWSPFY 198
>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine
Kinase-like Protein Tyrosine Kinases. Protein Tyrosine
Kinase (PTK) family; Spleen Tyrosine Kinase (Syk)
subfamily; catalytic (c) domain. The Syk subfamily is
composed of Syk, ZAP-70, Shark, and similar proteins. The
PTKc family is part of a larger superfamily that includes
the catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Syk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing two Src homology 2 (SH2) domains
N-terminal to the catalytic tyr kinase domain. They are
involved in the signaling downstream of activated
receptors (including B-cell, T-cell, and Fc receptors)
that contain ITAMs (immunoreceptor tyr activation
motifs), leading to processes such as cell proliferation,
differentiation, survival, adhesion, migration, and
phagocytosis. Syk is important in B-cell receptor (BCR)
signaling, while Zap-70 is primarily expressed in T-cells
and NK cells, and is a crucial component in T-cell
receptor (TCR) signaling. Syk also plays a central role
in Fc receptor-mediated phagocytosis in the adaptive
immune system. Shark is exclusively expressed in
ectodermally derived epithelia, and is localized
preferentially to the apical surface of the epithelial
cells, it may play a role in a signaling pathway for
epithelial cell polarity.
Length = 257
Score = 46.6 bits (111), Expect = 5e-05
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 37/198 (18%)
Query: 926 LRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 985
L YL++R ++ + + L Q+ G+ +L HRDL + N+LL + Q
Sbjct: 82 LLKYLKKR-REIPVSDLKELAHQVAMGMAYLESKHFVHRDLAARNVLL-VNRH----QAK 135
Query: 986 ITDFGSSYTNKSGLSMQYSSADIELGGN--VALMAPEVALATPGLFSFVNY----SKSDA 1039
I+DFG S +G S Y + G + APE +NY SKSD
Sbjct: 136 ISDFGMSRALGAG-SDYYRA---TTAGRWPLKWYAPEC----------INYGKFSSKSDV 181
Query: 1040 WTAGTVAYEIFGHDNPFYQSARNTDYEVNA-------LPQLNTNVPEVMRRLVAKLLEND 1092
W+ G +E F + Y + EV A LP+ P+ + ++ +
Sbjct: 182 WSYGVTLWEAFSYGAKPYGEMKGA--EVIAMLESGERLPRPE-ECPQEIYSIMLSCWKYR 238
Query: 1093 PSDRPS-AELAATVCQLY 1109
P DRP+ +EL +T +
Sbjct: 239 PEDRPTFSELESTFRRDP 256
Score = 42.7 bits (101), Expect = 9e-04
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 26/145 (17%)
Query: 1447 LRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 1506
L YL++R ++ + + L Q+ G+ +L HRDL + N+LL + Q
Sbjct: 82 LLKYLKKR-REIPVSDLKELAHQVAMGMAYLESKHFVHRDLAARNVLL-VNRH----QAK 135
Query: 1507 ITDFGSSYTNKSGLSMQYSSADIELGGN--VALMAPEVALATPGLFSFVNY----SKSDA 1560
I+DFG S +G S Y + G + APE +NY SKSD
Sbjct: 136 ISDFGMSRALGAG-SDYYRA---TTAGRWPLKWYAPEC----------INYGKFSSKSDV 181
Query: 1561 WTAGTVAYEIFGHDNPFYQSARNTD 1585
W+ G +E F + Y + +
Sbjct: 182 WSYGVTLWEAFSYGAKPYGEMKGAE 206
>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase
1-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Yeast protein kinase 1
(YPK1)-like subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The YPK1-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
fungal proteins with similarity to the AGC STKs,
Saccharomyces cerevisiae YPK1 and Schizosaccharomyces
pombe Gad8p. YPK1 is required for cell growth and acts as
a downstream kinase in the sphingolipid-mediated
signaling pathway of yeast. It also plays a role in
efficient endocytosis and in the maintenance of cell wall
integrity. Gad8p is a downstream target of Tor1p, the
fission yeast homolog of mTOR. It plays a role in cell
growth and sexual development.
Length = 312
Score = 46.9 bits (111), Expect = 6e-05
Identities = 41/152 (26%), Positives = 61/152 (40%), Gaps = 20/152 (13%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
+LL + +L+ +RDLK +NILLD + + DFG L+M+
Sbjct: 101 ELLCALENLHKFNVIYRDLKPENILLDYQG-----HIALCDFG-----LCKLNMKDDDKT 150
Query: 1008 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYE 1066
G +APE L Y+K+ D WT G + YE+ PFY N Y
Sbjct: 151 NTFCGTPEYLAPE-------LLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVNEMYR 203
Query: 1067 --VNALPQLNTNVPEVMRRLVAKLLENDPSDR 1096
+ + + L+ LL DP+ R
Sbjct: 204 KILQEPLRFPDGFDRDAKDLLIGLLSRDPTRR 235
Score = 45.7 bits (108), Expect = 1e-04
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 20/131 (15%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
+LL + +L+ +RDLK +NILLD + + DFG L+M+
Sbjct: 101 ELLCALENLHKFNVIYRDLKPENILLDYQG-----HIALCDFG-----LCKLNMKDDDKT 150
Query: 1529 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYW 1587
G +APE L Y+K+ D WT G + YE+ PFY N +
Sbjct: 151 NTFCGTPEYLAPE-------LLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYD--ENVNEM 201
Query: 1588 HRKWLWQHLVY 1598
+RK L + L +
Sbjct: 202 YRKILQEPLRF 212
Score = 30.7 bits (69), Expect = 6.5
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 261 PGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMR 317
P L Y+K+ D WT G + YE+ PFY N Y + + +
Sbjct: 162 PELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVNEMYRKILQEPLRFPDGFDRDAK 221
Query: 318 RLVAKLLENDPSDR 331
L+ LL DP+ R
Sbjct: 222 DLLIGLLSRDPTRR 235
Score = 30.7 bits (69), Expect = 6.5
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 702 PGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMR 758
P L Y+K+ D WT G + YE+ PFY N Y + + +
Sbjct: 162 PELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVNEMYRKILQEPLRFPDGFDRDAK 221
Query: 759 RLVAKLLENDPSDR 772
L+ LL DP+ R
Sbjct: 222 DLLIGLLSRDPTRR 235
>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine
Kinase, G protein-coupled Receptor Kinase 7.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The GRK subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. GRKs phosphorylate
and regulate G protein-coupled receptors (GPCRs), the
largest superfamily of cell surface receptors, which
regulate some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs
to the visual group of GRKs. It is primarily found in the
retina and plays a role in the regulation of opsin light
receptors. GRK7 is located in retinal cone outer segments
and plays an important role in regulating photoresponse
of the cones.
Length = 277
Score = 46.5 bits (110), Expect = 6e-05
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 22/150 (14%)
Query: 1462 ERILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGL 1520
ER++ ++ Q+ G+ HL+ +RD+K +N+LLD ++D G + K G
Sbjct: 95 ERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQG-----NCRLSDLGLAVELKDGK 149
Query: 1521 SMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPF-- 1577
++ + G MAPE+ P YS D + G YE+ PF
Sbjct: 150 TIT------QRAGTNGYMAPEILKEEP-------YSYPVDWFAMGCSIYEMVAGRTPFKD 196
Query: 1578 YQSARNTDYWHRKWLWQHLVYSHSSTTPST 1607
++ + R+ L + + H + T +
Sbjct: 197 HKEKVAKEELKRRTLEDEVKFEHQNFTEES 226
Score = 45.7 bits (108), Expect = 1e-04
Identities = 40/174 (22%), Positives = 67/174 (38%), Gaps = 38/174 (21%)
Query: 941 ERILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGL 999
ER++ ++ Q+ G+ HL+ +RD+K +N+LLD ++D G + K G
Sbjct: 95 ERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQG-----NCRLSDLGLAVELKDGK 149
Query: 1000 SMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQ 1058
++ + G MAPE+ P YS D + G YE+ PF
Sbjct: 150 TIT------QRAGTNGYMAPEILKEEP-------YSYPVDWFAMGCSIYEMVAGRTPFKD 196
Query: 1059 SARNTDYEVNALPQLNTNVPEVMRRLVAK--LLENDPSDRPSAELAATVCQLYL 1110
E E+ RR + E+ S + +C+L+L
Sbjct: 197 HKEKVAKE------------ELKRRTLEDEVKFEHQNFTEESKD----ICRLFL 234
>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine
Kinase, G protein-coupled Receptor Kinase 4.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The GRK subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. GRKs phosphorylate
and regulate G protein-coupled receptors (GPCRs), the
largest superfamily of cell surface receptors which
regulate some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK4 has a limited tissue distribution. It
is mainly found in the testis, but is also present in the
cerebellum and kidney. It is expressed as multiple splice
variants with different domain architectures. It is
post-translationally palmitoylated and localized in the
membrane. GRK4 polymorphisms are associated with
hypertension and salt sensitivity, as they cause
hyperphosphorylation, desensitization, and
internalization of the dopamine 1 (D1) receptor while
increasing the expression of the angiotensin II type 1
receptor. GRK4 plays a crucial role in the D1 receptor
regulation of sodium excretion and blood pressure.
Length = 285
Score = 46.5 bits (110), Expect = 7e-05
Identities = 42/165 (25%), Positives = 64/165 (38%), Gaps = 28/165 (16%)
Query: 941 ERILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGL 999
+R + + +L G+ L R +RDLK +NILLD + I+D GL
Sbjct: 102 QRAIFYAAELCCGLEDLQRERIVYRDLKPENILLD-----DRGHIRISDL--------GL 148
Query: 1000 SMQYSSADIELG--GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFY 1057
++Q + G G V MAPEV FS D W G + YE+ +PF
Sbjct: 149 AVQIPEGETVRGRVGTVGYMAPEVINNEKYTFS------PDWWGLGCLIYEMIQGQSPFR 202
Query: 1058 QSARNTDYE------VNALPQLNTNVPEVMRRLVAKLLENDPSDR 1096
+ E + + E + + LL +P +R
Sbjct: 203 KRKERVKREEVDRRVKEDQEEYSEKFSEDAKSICRMLLTKNPKER 247
Score = 45.4 bits (107), Expect = 2e-04
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 22/119 (18%)
Query: 1462 ERILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGL 1520
+R + + +L G+ L R +RDLK +NILLD + I+D GL
Sbjct: 102 QRAIFYAAELCCGLEDLQRERIVYRDLKPENILLD-----DRGHIRISDL--------GL 148
Query: 1521 SMQYSSADIELG--GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF 1577
++Q + G G V MAPEV FS D W G + YE+ +PF
Sbjct: 149 AVQIPEGETVRGRVGTVGYMAPEVINNEKYTFS------PDWWGLGCLIYEMIQGQSPF 201
>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein
Serine/Threonine Kinase, STK10 or Lymphocyte-oriented
kinase. Serine/threonine kinases (STKs), STK10
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
STK10 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Other names for STK10 include
lymphocyte-oriented kinase (LOK) and Xenopus polo-like
kinase kinase 1 (xPlkk1). STK10 is highly expressed in
lymphocytes and is responsible in regulating leukocyte
function associated antigen (LFA-1)-mediated lymphocyte
adhesion. It plays a role in regulating the CD28
responsive element in T cells, and may also function as a
regulator of polo-like kinase 1 (Plk1), a protein which
is overexpressed in multiple tumor types.
Length = 292
Score = 46.2 bits (109), Expect = 8e-05
Identities = 46/158 (29%), Positives = 67/158 (42%), Gaps = 18/158 (11%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
Q+LE + +L+ + HRDLK+ N+LL D + + DFG S N L + S
Sbjct: 118 QMLEALQYLHSMKIIHRDLKAGNVLLTLDGD-----IKLADFGVSAKNVKTLQRRDS--- 169
Query: 1008 IELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-----HD-NPFYQSAR 1061
G MAPEV + + +Y K+D W+ G E+ H+ NP +
Sbjct: 170 --FIGTPYWMAPEVVMCETMKDTPYDY-KADIWSLGITLIEMAQIEPPHHELNPMRVLLK 226
Query: 1062 NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA 1099
E L Q + E R + L+ P RPSA
Sbjct: 227 IAKSEPPTLSQPSKWSME-FRDFLKTALDKHPETRPSA 263
Score = 43.9 bits (103), Expect = 4e-04
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
Q+LE + +L+ + HRDLK+ N+LL D + + DFG S N L + S
Sbjct: 118 QMLEALQYLHSMKIIHRDLKAGNVLLTLDGD-----IKLADFGVSAKNVKTLQRRDS--- 169
Query: 1529 IELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQ 1579
G MAPEV + + +Y K+D W+ G E+ + P ++
Sbjct: 170 --FIGTPYWMAPEVVMCETMKDTPYDY-KADIWSLGITLIEMAQIEPPHHE 217
>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase
(PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain
(repeat 2). The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Jak1 is a member of the Janus kinase (Jak) subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal FERM domain, followed by
a Src homology 2 (SH2) domain, a pseudokinase domain, and
a C-terminal tyr kinase domain. Jaks are crucial for
cytokine receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs). Jak1
is widely expressed in many tissues. Many cytokines are
dependent on Jak1 for signaling, including those that use
the shared receptor subunits common gamma chain (IL-2,
IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11,
oncostatin M, G-CSF, and IFNs, among others). The many
varied interactions of Jak1 and its ubiquitous expression
suggest many biological roles. Jak1 is important in
neurological development, as well as in lymphoid
development and function. It also plays a role in the
pathophysiology of cardiac hypertrophy and heart failure.
A mutation in the ATP-binding site of Jak1 was identified
in a human uterine leiomyosarcoma cell line, resulting in
defective cytokine induction and antigen presentation,
thus allowing the tumor to evade the immune system.
Length = 284
Score = 46.1 bits (109), Expect = 8e-05
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 41/217 (18%)
Query: 1447 LRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 1506
L+ YL ++++ +++ Q+ +G+ +L + HRDL + N+L++ SE Q+
Sbjct: 95 LKEYLPRNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVE-SEH----QVK 149
Query: 1507 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTV 1566
I DFG + ++ +Y + +L V APE + + F Y SD W+ G
Sbjct: 150 IGDFGLTKAIET--DKEYYTVKDDLDSPVFWYAPECLIQS----KF--YIASDVWSFGVT 201
Query: 1567 AYEIFGHDNPFYQSARNTDYWHRKWLWQHLVYSHSSTTPSTVAYEIFGHDNPFYQSAR-- 1624
YE+ L Y S ++P T+ ++ G + R
Sbjct: 202 LYEL-------------------------LTYCDSESSPMTLFLKMIGPTHGQMTVTRLV 236
Query: 1625 NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS 1661
E LP+ N PE + +L+ K E PS R +
Sbjct: 237 RVLEEGKRLPR-PPNCPEEVYQLMRKCWEFQPSKRTT 272
Score = 40.7 bits (95), Expect = 0.004
Identities = 46/192 (23%), Positives = 81/192 (42%), Gaps = 33/192 (17%)
Query: 926 LRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 985
L+ YL ++++ +++ Q+ +G+ +L + HRDL + N+L++ SE Q+
Sbjct: 95 LKEYLPRNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVE-SEH----QVK 149
Query: 986 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTV 1045
I DFG + ++ +Y + +L V APE + + F Y SD W+ G
Sbjct: 150 IGDFGLTKAIET--DKEYYTVKDDLDSPVFWYAPECLIQS----KF--YIASDVWSFGVT 201
Query: 1046 AYEIFGHDNPFYQS-----------------AR--NTDYEVNALPQLNTNVPEVMRRLVA 1086
YE+ + + R E LP+ N PE + +L+
Sbjct: 202 LYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLEEGKRLPR-PPNCPEEVYQLMR 260
Query: 1087 KLLENDPSDRPS 1098
K E PS R +
Sbjct: 261 KCWEFQPSKRTT 272
>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase,
c-Jun N-terminal Kinase 3. Serine/Threonine Kinases
(STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The JNK3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. JNKs are
mitogen-activated protein kinases (MAPKs) that are
involved in many stress-activated responses including
those during inflammation, neurodegeneration, apoptosis,
and persistent pain sensitization, among others.
Vetebrates harbor three different JNK genes (Jnk1, Jnk2,
and Jnk3). JNK3 is expressed primarily in the brain, and
to a lesser extent in the heart and testis. Mice
deficient in Jnk3 are protected against kainic
acid-induced seizures, stroke, sciatic axotomy neural
death, and neuronal death due to NGF deprivation,
oxidative stress, or exposure to beta-amyloid peptide.
This suggests that JNK3 may play roles in the
pathogenesis of these diseases.
Length = 355
Score = 46.6 bits (110), Expect = 8e-05
Identities = 49/161 (30%), Positives = 71/161 (44%), Gaps = 28/161 (17%)
Query: 940 HERI-LLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNTCPQLVITDFGSSYTNK 996
HER+ L Q+L G+ HL+ HRDLK NI++ DC+ L I DFG + T
Sbjct: 118 HERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCT-------LKILDFGLART-- 168
Query: 997 SGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNP 1055
+G S + + APEV L + Y ++ D W+ G + E+ H
Sbjct: 169 AGTSFMMTPYVV----TRYYRAPEVILG-------MGYKENVDIWSVGCIMGEMVRH-KI 216
Query: 1056 FYQSARNTDYEVNALPQLNTNVPEVMRRL---VAKLLENDP 1093
+ D + QL T PE M++L V +EN P
Sbjct: 217 LFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRP 257
Score = 37.8 bits (87), Expect = 0.042
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 24/117 (20%)
Query: 1461 HERI-LLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNTCPQLVITDFGSSYTNK 1517
HER+ L Q+L G+ HL+ HRDLK NI++ DC+ L I DFG + T
Sbjct: 118 HERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCT-------LKILDFGLART-- 168
Query: 1518 SGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGH 1573
+G S + + APEV L + Y ++ D W+ G + E+ H
Sbjct: 169 AGTSFMMTPYVV----TRYYRAPEVILG-------MGYKENVDIWSVGCIMGEMVRH 214
>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase,
p38 Mitogen-Activated Protein Kinase. Serine/Threonine
Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The p38 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They
function in the regulation of the cell cycle, cell
development, cell differentiation, senescence,
tumorigenesis, apoptosis, pain development and pain
progression, and immune responses. p38 kinases are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. p38 substrates
include other protein kinases and factors that regulate
transcription, nuclear export, mRNA stability and
translation. p38 kinases are drug targets for the
inflammatory diseases psoriasis, rheumatoid arthritis,
and chronic pulmonary disease. Vertebrates contain four
isoforms of p38, named alpha, beta, gamma, and delta,
which show varying substrate specificity and expression
patterns. p38alpha and p38beta are ubiquitously
expressed, p38gamma is predominantly found in skeletal
muscle, and p38delta is found in the heart, lung, testis,
pancreas, and small intestine.
Length = 343
Score = 46.5 bits (111), Expect = 9e-05
Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 69/220 (31%)
Query: 924 TDLRNYLRERCAQLS-MHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 982
DL N ++ C +LS H + L++ Q+L G+ +++ HRDLK NI ++ ED C
Sbjct: 104 ADLNNIVK--CQKLSDDHIQFLVY-QILRGLKYIHSAGIIHRDLKPSNIAVN--ED--C- 155
Query: 983 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPGLFSFVNYSKS-D 1038
+L I DF GL+ D E+ G VA APE+ + ++++Y+++ D
Sbjct: 156 ELKILDF--------GLARH---TDDEMTGYVATRWYRAPEI------MLNWMHYNQTVD 198
Query: 1039 AWTAGTVAYE------IFGHDNPFYQ----------------------SARNTDYEVNAL 1070
W+ G + E +F + Q SARN Y + +L
Sbjct: 199 IWSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPDEELLQKISSESARN--Y-IQSL 255
Query: 1071 PQL-NTNVPEVMRR-------LVAKLLENDPSDRPSAELA 1102
PQ+ + EV L+ K+L DP R +A A
Sbjct: 256 PQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEA 295
Score = 45.4 bits (108), Expect = 2e-04
Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 30/130 (23%)
Query: 1445 TDLRNYLRERCAQLS-MHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 1503
DL N ++ C +LS H + L++ Q+L G+ +++ HRDLK NI ++ ED C
Sbjct: 104 ADLNNIVK--CQKLSDDHIQFLVY-QILRGLKYIHSAGIIHRDLKPSNIAVN--ED--C- 155
Query: 1504 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPGLFSFVNYSKS-D 1559
+L I DF GL+ D E+ G VA APE+ + ++++Y+++ D
Sbjct: 156 ELKILDF--------GLARH---TDDEMTGYVATRWYRAPEI------MLNWMHYNQTVD 198
Query: 1560 AWTAGTVAYE 1569
W+ G + E
Sbjct: 199 IWSVGCIMAE 208
>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C theta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), theta isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of their
regulatory domain. nPKCs are calcium-independent, but
require DAG (1,2-diacylglycerol) and phosphatidylserine
(PS) for activity. There are four nPKC isoforms, delta,
epsilon, eta, and theta. PKC-theta is selectively
expressed in T-cells and plays an important and
non-redundant role in several aspects of T-cell biology.
Although T-cells also express other PKC isoforms,
PKC-theta is unique in that upon antigen stimulation, it
is translocated to the plasma membrane at the
immunological synapse, where it mediates signals
essential for T-cell activation. It is essential for
TCR-induced proliferation, cytokine production, T-cell
survival, and the differentiation and effector function
of T-helper (Th) cells, particularly Th2 and Th17.
PKC-theta is being developed as a therapeutic target for
Th2-mediated allergic inflammation and Th17-mediated
autoimmune diseases.
Length = 316
Score = 46.1 bits (109), Expect = 1e-04
Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 24/166 (14%)
Query: 1435 SLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL 1494
+LF +M+ N + + C + + +++ G+ L+ +RDLK DNILL
Sbjct: 70 NLFFVMEYLNGGDLMFHIQSCHKFDLPRATFYAAEIICGLQFLHSKGIVYRDLKLDNILL 129
Query: 1495 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 1554
D T + I DFG N G + G +APE+ L N
Sbjct: 130 D-----TDGHIKIADFGMCKENMLG-----DAKTCTFCGTPDYIAPEILLGQK-----YN 174
Query: 1555 YSKSDAWTAGTVAYEIFGHDNPF--------YQSARNTDYWHRKWL 1592
S D W+ G + YE+ +PF +QS R + + +WL
Sbjct: 175 TS-VDWWSFGVLLYEMLIGQSPFHGHDEEELFQSIRMDNPCYPRWL 219
Score = 42.3 bits (99), Expect = 0.002
Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 16/144 (11%)
Query: 914 SLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL 973
+LF +M+ N + + C + + +++ G+ L+ +RDLK DNILL
Sbjct: 70 NLFFVMEYLNGGDLMFHIQSCHKFDLPRATFYAAEIICGLQFLHSKGIVYRDLKLDNILL 129
Query: 974 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 1033
D T + I DFG N G + G +APE+ L N
Sbjct: 130 D-----TDGHIKIADFGMCKENMLG-----DAKTCTFCGTPDYIAPEILLGQK-----YN 174
Query: 1034 YSKSDAWTAGTVAYEIFGHDNPFY 1057
S D W+ G + YE+ +PF+
Sbjct: 175 TS-VDWWSFGVLLYEMLIGQSPFH 197
>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine
Kinase, Colon Carcinoma Kinase 4. Protein Tyrosine
Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4);
pseudokinase domain. The PTKc (catalytic domain) family,
to which this subfamily belongs, includes the catalytic
domains of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. CCK4, also called protein
tyrosine kinase 7 (PTK7), is an orphan receptor tyr
kinase (RTK) containing an extracellular region with
seven immunoglobulin domains, a transmembrane segment,
and an intracellular inactive pseudokinase domain.
Studies in mice reveal that CCK4 is essential for neural
development. Mouse embryos containing a truncated CCK4
die perinatally and display craniorachischisis, a severe
form of neural tube defect. The mechanism of action of
the CCK4 pseudokinase is still unknown. Other
pseudokinases such as HER3 rely on the activity of
partner RTKs.
Length = 275
Score = 45.5 bits (108), Expect = 1e-04
Identities = 54/200 (27%), Positives = 84/200 (42%), Gaps = 43/200 (21%)
Query: 925 DLRNYLR--------ERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 976
DL+ +LR + LS +++ L TQ+ G+ HL+ R HRDL + N L+ S
Sbjct: 94 DLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNARFVHRDLAARNCLV--S 151
Query: 977 EDN----TCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV 1032
+ L + S Y + +A I L +APE FS
Sbjct: 152 SQREVKVSLLSLSKDVYNSEY-------YKLRNALIPL----RWLAPEAVQE--DDFS-- 196
Query: 1033 NYSKSDAWTAGTVAYEIFGHDN-PFYQSARNTDYEVNALPQ-------LNTNVPEVMRRL 1084
+KSD W+ G + +E+F PFY +D EV Q + P + +L
Sbjct: 197 --TKSDVWSFGVLMWEVFTQGELPFYGL---SDEEVLNRLQAGKLELPVPEGCPSRLYKL 251
Query: 1085 VAKLLENDPSDRPS-AELAA 1103
+ + +P DRPS +EL +
Sbjct: 252 MTRCWAVNPKDRPSFSELVS 271
Score = 37.1 bits (86), Expect = 0.071
Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 32/146 (21%)
Query: 1446 DLRNYLR--------ERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 1497
DL+ +LR + LS +++ L TQ+ G+ HL+ R HRDL + N L+ S
Sbjct: 94 DLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNARFVHRDLAARNCLV--S 151
Query: 1498 EDN----TCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV 1553
+ L + S Y + +A I L +APE FS
Sbjct: 152 SQREVKVSLLSLSKDVYNSEY-------YKLRNALIPL----RWLAPEAVQE--DDFS-- 196
Query: 1554 NYSKSDAWTAGTVAYEIFGHDN-PFY 1578
+KSD W+ G + +E+F PFY
Sbjct: 197 --TKSDVWSFGVLMWEVFTQGELPFY 220
Score = 33.6 bits (77), Expect = 0.72
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Query: 252 MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDN-PFYQSARNTDYEVNALPQ--- 307
+APE FS +KSD W+ G + +E+F PFY +D EV Q
Sbjct: 185 LAPEAVQE--DDFS----TKSDVWSFGVLMWEVFTQGELPFYGL---SDEEVLNRLQAGK 235
Query: 308 ----LNTNVPEVMRRLVAKLLENDPSDRPS-AELAA 338
+ P + +L+ + +P DRPS +EL +
Sbjct: 236 LELPVPEGCPSRLYKLMTRCWAVNPKDRPSFSELVS 271
Score = 33.6 bits (77), Expect = 0.72
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Query: 693 MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDN-PFYQSARNTDYEVNALPQ--- 748
+APE FS +KSD W+ G + +E+F PFY +D EV Q
Sbjct: 185 LAPEAVQE--DDFS----TKSDVWSFGVLMWEVFTQGELPFYGL---SDEEVLNRLQAGK 235
Query: 749 ----LNTNVPEVMRRLVAKLLENDPSDRPS-AELAA 779
+ P + +L+ + +P DRPS +EL +
Sbjct: 236 LELPVPEGCPSRLYKLMTRCWAVNPKDRPSFSELVS 271
>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases,
Tropomyosin Related Kinases. Protein Tyrosine Kinase
(PTK) family; Tropomyosin Related Kinase (Trk) subfamily;
catalytic (c) domain. The Trk subfamily consists of TrkA,
TrkB, TrkC, and similar proteins. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Trk subfamily members are
receptor tyr kinases (RTKs) containing an extracellular
region with arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment, and
an intracellular catalytic domain. Binding to their
ligands, the nerve growth factor (NGF) family of
neutrotrophins, leads to Trk receptor oligomerization and
activation of the catalytic domain. Trk receptors are
mainly expressed in the peripheral and central nervous
systems. They play important roles in cell fate
determination, neuronal survival and differentiation, as
well as in the regulation of synaptic plasticity. Altered
expression of Trk receptors is associated with many human
diseases.
Length = 280
Score = 45.5 bits (108), Expect = 1e-04
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 42/166 (25%)
Query: 913 MSLFILMKKYNTDLRNYLR-------------ERCAQLSMHERILLFTQLLEGVTHLNMH 959
+ +F M+ + DL +LR +L++ + + + Q+ G+ +L
Sbjct: 84 IMVFEYME--HGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQ 141
Query: 960 RTAHRDLKSDNILLDCSEDNTCPQLV--ITDFGSSYTNKSGLSMQYSSADIELGGNVAL- 1016
HRDL + N L+ LV I DFG S Y++ +GG+ L
Sbjct: 142 HFVHRDLATRNCLVGYD-------LVVKIGDFGMSRD-------VYTTDYYRVGGHTMLP 187
Query: 1017 ---MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGH-DNPFYQ 1058
M PE + F+ ++SD W+ G V +EIF + P+Y
Sbjct: 188 IRWMPPESIMY--RKFT----TESDVWSFGVVLWEIFTYGKQPWYG 227
Score = 45.5 bits (108), Expect = 1e-04
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 42/166 (25%)
Query: 1434 MSLFILMKKYNTDLRNYLR-------------ERCAQLSMHERILLFTQLLEGVTHLNMH 1480
+ +F M+ + DL +LR +L++ + + + Q+ G+ +L
Sbjct: 84 IMVFEYME--HGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQ 141
Query: 1481 RTAHRDLKSDNILLDCSEDNTCPQLV--ITDFGSSYTNKSGLSMQYSSADIELGGNVAL- 1537
HRDL + N L+ LV I DFG S Y++ +GG+ L
Sbjct: 142 HFVHRDLATRNCLVGYD-------LVVKIGDFGMSRD-------VYTTDYYRVGGHTMLP 187
Query: 1538 ---MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGH-DNPFYQ 1579
M PE + F+ ++SD W+ G V +EIF + P+Y
Sbjct: 188 IRWMPPESIMY--RKFT----TESDVWSFGVVLWEIFTYGKQPWYG 227
>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase,
Mitogen-Activated Protein Kinase. Serine/Threonine
Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MAPK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKs serve as important mediators of cellular
responses to extracellular signals. They control critical
cellular functions including differentiation,
proliferation, migration, and apoptosis. They are also
implicated in the pathogenesis of many diseases including
multiple types of cancer, stroke, diabetes, and chronic
inflammation. Typical MAPK pathways involve a triple
kinase core cascade comprising of the MAPK, which is
phosphorylated and activated by a MAPK kinase (MAP2K or
MKK), which itself is phosphorylated and activated by a
MAPK kinase kinase (MAP3K or MKKK). Each cascade is
activated either by a small GTP-binding protein or by an
adaptor protein, which transmits the signal either
directly to a MAP3K to start the triple kinase core
cascade or indirectly through a mediator kinase, a MAP4K.
There are three main typical MAPK subfamilies:
Extracellular signal-Regulated Kinase (ERK), c-Jun
N-terminal Kinase (JNK), and p38. Some MAPKs are atypical
in that they are not regulated by MAP2Ks. These include
MAPK4, MAPK6, NLK, and ERK7.
Length = 330
Score = 46.0 bits (110), Expect = 1e-04
Identities = 60/254 (23%), Positives = 93/254 (36%), Gaps = 68/254 (26%)
Query: 1435 SLFILMKKYNTDLRNYLRERCAQLSMHERILLFT-QLLEGVTHLNMHRT--AHRDLKSDN 1491
++I+ + TDL ++ Q + I F Q+L G+ + +H HRDLK N
Sbjct: 78 DVYIVTELMETDLHKVIKSP--QPLTDDHIQYFLYQILRGLKY--LHSANVIHRDLKPSN 133
Query: 1492 ILL--DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---------AP 1540
IL+ +C L I DF GL+ D + L AP
Sbjct: 134 ILVNSNC-------DLKICDF--------GLA---RGVDPDEDEKGFLTEYVVTRWYRAP 175
Query: 1541 EVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYWHRKWLWQHLVYS 1599
E+ L S Y+K+ D W+ G + E+ P + DY + +V
Sbjct: 176 ELLL------SSSRYTKAIDIWSVGCIFAELLTR-KPLFPG---RDYIDQ---LNLIV-- 220
Query: 1600 HSSTTPSTVAYEIFGHDNPFYQSARNTDYEVNALP--------QLNTNVPEVMRRLVAKL 1651
TPS + + ARN + +LP +L L+ K+
Sbjct: 221 EVLGTPSEEDLKFITSEK-----ARN---YLKSLPKKPKKPLSKLFPGASPEAIDLLEKM 272
Query: 1652 LENDPSDRPSAELA 1665
L DP R +A+ A
Sbjct: 273 LVFDPKKRITADEA 286
Score = 45.2 bits (108), Expect = 2e-04
Identities = 55/240 (22%), Positives = 84/240 (35%), Gaps = 82/240 (34%)
Query: 914 SLFILMKKYNTDLRNYLRERCAQLSMHERILLFT-QLLEGVTHLNMHRT--AHRDLKSDN 970
++I+ + TDL ++ Q + I F Q+L G+ + +H HRDLK N
Sbjct: 78 DVYIVTELMETDLHKVIKSP--QPLTDDHIQYFLYQILRGLKY--LHSANVIHRDLKPSN 133
Query: 971 ILL--DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---------AP 1019
IL+ +C L I DF GL+ D + L AP
Sbjct: 134 ILVNSNC-------DLKICDF--------GLA---RGVDPDEDEKGFLTEYVVTRWYRAP 175
Query: 1020 EVALATPGLFSFVNYSKS-DAWTAGTVAYEIF-------GHDN----------------- 1054
E+ L S Y+K+ D W+ G + E+ G D
Sbjct: 176 ELLL------SSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPSEE 229
Query: 1055 ----PFYQSARNTDYEVNALP--------QLNTNVPEVMRRLVAKLLENDPSDRPSAELA 1102
+ ARN + +LP +L L+ K+L DP R +A+ A
Sbjct: 230 DLKFITSEKARN---YLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEA 286
>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor
Receptor-like Protein Tyrosine Kinases. Protein Tyrosine
Kinase (PTK) family; Epidermal Growth Factor Receptor
(EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB)
subfamily members include EGFR (HER1, ErbB1), HER2
(ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar
proteins. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases such
as protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. The EGFR
proteins are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation loop
of EGFR proteins is not critical to their activation.
Instead, they are activated by ligand-induced
dimerization, resulting in the phosphorylation of tyr
residues in the C-terminal tail, which serve as binding
sites for downstream signaling molecules. Collectively,
they can recognize a variety of ligands including EGF,
TGFalpha, and neuregulins, among others. All four
subfamily members can form homo- or heterodimers. HER3
contains an impaired kinase domain and depends on its
heterodimerization partner for activation. EGFR subfamily
members are involved in signaling pathways leading to a
broad range of cellular responses including cell
proliferation, differentiation, migration, growth
inhibition, and apoptosis. Gain of function alterations,
through their overexpression, deletions, or point
mutations in their kinase domains, have been implicated
in various cancers. These receptors are targets of many
small molecule inhibitors and monoclonal antibodies used
in cancer therapy.
Length = 279
Score = 45.5 bits (108), Expect = 1e-04
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 26/131 (19%)
Query: 926 LRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 985
L +Y+R + + Q+ +G+++L R HRDL + N+L+ PQ V
Sbjct: 95 LLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEEKRLVHRDLAARNVLVK------TPQHV 148
Query: 986 -ITDFGSSYTNKSGLSMQYSSADIEL---GGNVAL--MAPEVALATPGLFSFVNYSKSDA 1039
ITDF GL+ + E GG V + MA E + + KSD
Sbjct: 149 KITDF--------GLAKLLDVDEKEYHAEGGKVPIKWMALE------SILHRIYTHKSDV 194
Query: 1040 WTAGTVAYEIF 1050
W+ G +E+
Sbjct: 195 WSYGVTVWELM 205
Score = 45.5 bits (108), Expect = 1e-04
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 26/131 (19%)
Query: 1447 LRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 1506
L +Y+R + + Q+ +G+++L R HRDL + N+L+ PQ V
Sbjct: 95 LLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEEKRLVHRDLAARNVLVK------TPQHV 148
Query: 1507 -ITDFGSSYTNKSGLSMQYSSADIEL---GGNVAL--MAPEVALATPGLFSFVNYSKSDA 1560
ITDF GL+ + E GG V + MA E + + KSD
Sbjct: 149 KITDF--------GLAKLLDVDEKEYHAEGGKVPIKWMALE------SILHRIYTHKSDV 194
Query: 1561 WTAGTVAYEIF 1571
W+ G +E+
Sbjct: 195 WSYGVTVWELM 205
>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein
Serine/Threonine Kinase, 70 kDa ribosomal protein S6
kinase. Serine/Threonine Kinases (STKs), 70 kDa
ribosomal protein S6 kinase (p70S6K) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The p70S6K subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. p70S6K (or S6K)
contains only one catalytic kinase domain, unlike p90
ribosomal S6 kinases (RSKs). It acts as a downstream
effector of the STK mTOR (mammalian Target of Rapamycin)
and plays a role in the regulation of the translation
machinery during protein synthesis. p70S6K also plays a
pivotal role in regulating cell size and glucose
homeostasis. Its targets include S6, the translation
initiation factor eIF3, and the insulin receptor
substrate IRS-1, among others. Mammals contain two
isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta).
Length = 323
Score = 45.9 bits (109), Expect = 1e-04
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 22/146 (15%)
Query: 955 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNV 1014
HL+ +RDLK +NILLD + +TDFG + ++ ++ G +
Sbjct: 115 HLHQQGIIYRDLKPENILLDAQG-----HVKLTDFGLCKESIHEGTVTHT-----FCGTI 164
Query: 1015 ALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLN 1074
MAPE+ L G V D W+ G + Y++ PF +A N ++ + +
Sbjct: 165 EYMAPEI-LMRSGHGKAV-----DWWSLGALMYDMLTGAPPF--TAENRKKTIDKILKGK 216
Query: 1075 TNVPEVM----RRLVAKLLENDPSDR 1096
N+P + R L+ KLL+ +PS R
Sbjct: 217 LNLPPYLTPEARDLLKKLLKRNPSSR 242
Score = 36.7 bits (85), Expect = 0.089
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 16/102 (15%)
Query: 1476 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNV 1535
HL+ +RDLK +NILLD + +TDFG + ++ ++ G +
Sbjct: 115 HLHQQGIIYRDLKPENILLDAQG-----HVKLTDFGLCKESIHEGTVTHT-----FCGTI 164
Query: 1536 ALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF 1577
MAPE+ L G V D W+ G + Y++ PF
Sbjct: 165 EYMAPEI-LMRSGHGKAV-----DWWSLGALMYDMLTGAPPF 200
>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C delta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), delta isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of their
regulatory domain. nPKCs are calcium-independent, but
require DAG (1,2-diacylglycerol) and phosphatidylserine
(PS) for activity. There are four nPKC isoforms, delta,
epsilon, eta, and theta. PKC-delta plays a role in cell
cycle regulation and programmed cell death in many cell
types. It slows down cell proliferation, inducing cell
cycle arrest and enhancing cell differentiation.
PKC-delta is also involved in the regulation of
transcription as well as immune and inflammatory
responses. It plays a central role in the genotoxic
stress response that leads to DNA damaged-induced
apoptosis.
Length = 316
Score = 45.7 bits (108), Expect = 1e-04
Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 20/185 (10%)
Query: 915 LFILMKKYNT-DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL 973
LF +M+ N DL +++++ + ++ +++ G+ L+ +RDLK DN++L
Sbjct: 71 LFFVMEFLNGGDLMFHIQDK-GRFDLYRATFYAAEIVCGLQFLHSKGIIYRDLKLDNVML 129
Query: 974 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 1033
D D + I DFG N G + + G +APE+ FS
Sbjct: 130 D--RDG---HIKIADFGMCKENVFGDNRAST-----FCGTPDYIAPEILQGLKYTFSV-- 177
Query: 1034 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL--PQLNTNVPEVMRRLVAKLLEN 1091
D W+ G + YE+ +PF+ + +E + P + + + ++ KL E
Sbjct: 178 ----DWWSFGVLLYEMLIGQSPFHGDDEDELFESIRVDTPHYPRWITKESKDILEKLFER 233
Query: 1092 DPSDR 1096
DP+ R
Sbjct: 234 DPTRR 238
Score = 40.3 bits (94), Expect = 0.007
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 18/144 (12%)
Query: 1436 LFILMKKYNT-DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL 1494
LF +M+ N DL +++++ + ++ +++ G+ L+ +RDLK DN++L
Sbjct: 71 LFFVMEFLNGGDLMFHIQDK-GRFDLYRATFYAAEIVCGLQFLHSKGIIYRDLKLDNVML 129
Query: 1495 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 1554
D D + I DFG N G + + G +APE+ FS
Sbjct: 130 D--RDG---HIKIADFGMCKENVFGDNRAST-----FCGTPDYIAPEILQGLKYTFSV-- 177
Query: 1555 YSKSDAWTAGTVAYEIFGHDNPFY 1578
D W+ G + YE+ +PF+
Sbjct: 178 ----DWWSFGVLLYEMLIGQSPFH 197
>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine
Kinase, MAP/ERK kinase kinase 3. Serine/threonine
kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK3 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK3 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates the MAPK kinase MEK5 (or
MKK5), which in turn phosphorylates and activates
extracellular signal-regulated kinase 5 (ERK5). The ERK5
cascade plays roles in promoting cell proliferation,
differentiation, neuronal survival, and neuroprotection.
MEKK3 plays an essential role in embryonic angiogenesis
and early heart development. In addition, MEKK3 is
involved in interleukin-1 receptor and Toll-like receptor
4 signaling. It is also a specific regulator of the
proinflammatory cytokines IL-6 and GM-CSF in some immune
cells. MEKK3 also regulates calcineurin, which plays a
critical role in T cell activation, apoptosis, skeletal
myocyte differentiation, and cardiac hypertrophy.
Length = 266
Score = 45.4 bits (107), Expect = 1e-04
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 40/168 (23%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK----SGLSMQY 1003
Q+LEG+++L+ + HRD+K NIL D + + + + DFG+S + SG ++
Sbjct: 114 QILEGMSYLHSNMIVHRDIKGANILRDSAGN-----VKLGDFGASKRLQTICMSGTGIR- 167
Query: 1004 SSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARN 1062
+ G M+PEV S Y K+D W+ G E+ P+
Sbjct: 168 -----SVTGTPYWMSPEV-------ISGEGYGRKADVWSLGCTVVEMLTEKPPW------ 209
Query: 1063 TDYEVNAL----------PQLNTNVPEVMRRLVAKLLENDPSDRPSAE 1100
+YE A PQL +++ E R + + + RPSAE
Sbjct: 210 AEYEAMAAIFKIATQPTNPQLPSHISEHARDFLGCIFV-EARHRPSAE 256
Score = 38.9 bits (90), Expect = 0.014
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 23/114 (20%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK----SGLSMQY 1524
Q+LEG+++L+ + HRD+K NIL D + + + + DFG+S + SG ++
Sbjct: 114 QILEGMSYLHSNMIVHRDIKGANILRDSAGN-----VKLGDFGASKRLQTICMSGTGIR- 167
Query: 1525 SSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPF 1577
+ G M+PEV S Y K+D W+ G E+ P+
Sbjct: 168 -----SVTGTPYWMSPEV-------ISGEGYGRKADVWSLGCTVVEMLTEKPPW 209
>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy
protein kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Myotonic Dystrophy
protein kinase (DMPK)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
DMPK-like subfamily is composed of DMPK and DMPK-related
cell division control protein 42 (Cdc42) binding kinase
(MRCK). Three isoforms of MRCK are known, named alpha,
beta and gamma. The DMPK gene is implicated in myotonic
dystrophy 1 (DM1), an inherited multisystemic disorder
with symptoms that include muscle hyperexcitability,
progressive muscle weakness and wasting, cataract
development, testicular atrophy, and cardiac conduction
defects. The genetic basis for DM1 is the mutational
expansion of a CTG repeat in the 3'-UTR of DMPK. DMPK is
expressed in skeletal and cardiac muscles, and in central
nervous tissues. The functional role of DMPK is not fully
understood. It may play a role in the signal transduction
and homeostasis of calcium. MRCK is activated via
interaction with the small GTPase Cdc42. MRCK/Cdc42
signaling mediates myosin-dependent cell motility.
MRCKgamma is expressed in heart and skeletal muscles,
unlike MRCKalpha and MRCKbeta, which are expressed
ubiquitously.
Length = 331
Score = 45.5 bits (108), Expect = 1e-04
Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 29/147 (19%)
Query: 956 LNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA 1015
++ HRD+K DN+LLD + + DFGS L + AD + NVA
Sbjct: 118 VHQLGYVHRDIKPDNVLLD-----KNGHIRLADFGSC------LRLL---ADGTVQSNVA 163
Query: 1016 L-----MAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDY---- 1065
+ ++PE+ A Y D W+ G YE+ + PFY + Y
Sbjct: 164 VGTPDYISPEILQAMED--GKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIM 221
Query: 1066 ---EVNALPQLNTNVPEVMRRLVAKLL 1089
E P T+V E + L+ +L+
Sbjct: 222 NHKEHFQFPPDVTDVSEEAKDLIRRLI 248
Score = 41.3 bits (97), Expect = 0.004
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 1477 LNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA 1536
++ HRD+K DN+LLD + + DFGS L + AD + NVA
Sbjct: 118 VHQLGYVHRDIKPDNVLLD-----KNGHIRLADFGSC------LRLL---ADGTVQSNVA 163
Query: 1537 L-----MAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFY 1578
+ ++PE+ A Y D W+ G YE+ + PFY
Sbjct: 164 VGTPDYISPEILQAMED--GKGRYGPECDWWSLGVCMYEMLYGETPFY 209
>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase,
c-Jun N-terminal Kinase. Serine/Threonine Kinases
(STKs), c-Jun N-terminal kinase (JNK) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The JNK subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. JNKs are
mitogen-activated protein kinases (MAPKs) that are
involved in many stress-activated responses including
those during inflammation, neurodegeneration, apoptosis,
and persistent pain sensitization, among others. They are
also essential regulators of physiological and
pathological processes and are involved in the
pathogenesis of several diseases such as diabetes,
atherosclerosis, stroke, Parkinson's and Alzheimer's.
Vetebrates harbor three different JNK genes (Jnk1, Jnk2,
and Jnk3) that are alternatively spliced to produce at
least 10 isoforms. JNKs are specifically activated by the
MAPK kinases MKK4 and MKK7, which are in turn activated
by upstream MAPK kinase kinases as a result of different
stimuli including stresses such as ultraviolet (UV)
irradiation, hyperosmolarity, heat shock, or cytokines.
JNKs activate a large number of different substrates
based on specific stimulus, cell type, and cellular
condition, and may be implicated in seemingly
contradictory functions.
Length = 353
Score = 45.9 bits (109), Expect = 1e-04
Identities = 49/167 (29%), Positives = 67/167 (40%), Gaps = 40/167 (23%)
Query: 940 HERI-LLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNTCPQLVITDFGSSYTNK 996
HER+ L Q+L G+ HL+ HRDLK NI++ DC+ L I DFG + T
Sbjct: 117 HERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCT-------LKILDFGLARTAG 169
Query: 997 SGLSM------QYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEI 1049
+ M +Y APEV L Y ++ D W+ G + E+
Sbjct: 170 TSFMMTPYVVTRY------------YRAPEVILGMG-------YKENVDIWSVGCIMGEM 210
Query: 1050 FGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRL---VAKLLENDP 1093
F + D + QL T E M RL V +EN P
Sbjct: 211 IRGTVLF-PGTDHIDQWNKIIEQLGTPSDEFMSRLQPTVRNYVENRP 256
Score = 42.8 bits (101), Expect = 0.001
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 10/65 (15%)
Query: 1461 HERI-LLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNTCPQLVITDFGSSYTNK 1517
HER+ L Q+L G+ HL+ HRDLK NI++ DC+ L I DFG + T
Sbjct: 117 HERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCT-------LKILDFGLARTAG 169
Query: 1518 SGLSM 1522
+ M
Sbjct: 170 TSFMM 174
>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like
Protein Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, fungal Rim15-like kinases,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAST kinase subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. Members of
this group include Saccharomyces cerevisiae Rim15,
Schizosaccharomyces pombe cek1, and similar fungal
proteins. They contain a central catalytic domain, which
contains an insert relative to MAST kinases. In addition,
Rim15 contains a C-terminal signal receiver (REC) domain
while cek1 contains an N-terminal PAS domain. Rim15 (or
Rim15p) functions as a regulator of meiosis. It acts as a
downstream effector of PKA and regulates entry into
stationary phase (G0). Thus, it plays a crucial role in
regulating yeast proliferation, differentiation, and
aging. Cek1 may facilitate progression of mitotic
anaphase.
Length = 260
Score = 45.2 bits (107), Expect = 1e-04
Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 26/165 (15%)
Query: 947 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 1006
+++ GV L+ HRD+K +N+L+D + L +TDFG S +
Sbjct: 104 AEVVLGVEDLHQRGIIHRDIKPENLLIDQTG-----HLKLTDFGLS-------RNGLENK 151
Query: 1007 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQS------A 1060
G +APE L SD W+ G V +E PF+
Sbjct: 152 KFV--GTPDYLAPETILGVGDD------KMSDWWSLGCVIFEFLFGYPPFHAETPDAVFD 203
Query: 1061 RNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV 1105
+N ++ L+ +LL DP+ R A +
Sbjct: 204 NILSRRINWPEEVKEFCSPEAVDLINRLLCMDPAKRLGANGYQEI 248
Score = 42.1 bits (99), Expect = 0.002
Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 20/110 (18%)
Query: 1468 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 1527
+++ GV L+ HRD+K +N+L+D + L +TDFG S +
Sbjct: 104 AEVVLGVEDLHQRGIIHRDIKPENLLIDQTG-----HLKLTDFGLS-------RNGLENK 151
Query: 1528 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF 1577
G +APE L SD W+ G V +E PF
Sbjct: 152 KFV--GTPDYLAPETILGVGDD------KMSDWWSLGCVIFEFLFGYPPF 193
>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine
Kinases, Platelet Derived Growth Factor Receptors.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) subfamily; catalytic (c)
domain. The PDGFR subfamily consists of PDGFR alpha,
PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar
proteins. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases such
as protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. PDGFR
subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
five immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. PDGFR
kinase domains are autoinhibited by their juxtamembrane
regions containing tyr residues. The binding to their
ligands leads to receptor dimerization, trans
phosphorylation and activation, and intracellular
signaling. PDGFR subfamily receptors are important in the
development of a variety of cells. PDGFRs are expressed
in a many cells including fibroblasts, neurons,
endometrial cells, mammary epithelial cells, and vascular
smooth muscle cells. PDGFR signaling is critical in
normal embryonic development, angiogenesis, and wound
healing. PDGFRs transduce mitogenic signals for
connective tissue cells and are important for cell shape
and motility. Kit is important in the development of
melanocytes, germ cells, mast cells, hematopoietic stem
cells, the interstitial cells of Cajal, and the pacemaker
cells of the GI tract. CSF-1R signaling is critical in
the regulation of macrophages and osteoclasts. Mammalian
FLT3 plays an important role in the survival,
proliferation, and differentiation of stem cells.
Length = 302
Score = 45.2 bits (107), Expect = 2e-04
Identities = 52/198 (26%), Positives = 79/198 (39%), Gaps = 56/198 (28%)
Query: 925 DLRNYLRERCAQLSMHERILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQ 983
DL N+LR + E +L F+ Q+ +G+ L HRDL + N+LL T +
Sbjct: 125 DLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLL------THGK 178
Query: 984 LV-ITDFG--------SSYTNKSGLSMQYSSADIELGGNVAL----MAPEVALATPGLFS 1030
+V I DFG S+Y K GN L MAPE +F+
Sbjct: 179 IVKICDFGLARDIMNDSNYVVK---------------GNARLPVKWMAPE------SIFN 217
Query: 1031 FVNYSKSDAWTAGTVAYEIFG----------HDNPFYQSARNTDYEVNALPQLNTNVPEV 1080
V +SD W+ G + +EIF D+ FY+ + Y + + ++
Sbjct: 218 CVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDSKFYKLIKE-GYRMAQPEHAPAEIYDI 276
Query: 1081 MRRLVAKLLENDPSDRPS 1098
M+ DP RP+
Sbjct: 277 MKTCWDA----DPLKRPT 290
Score = 44.4 bits (105), Expect = 3e-04
Identities = 43/140 (30%), Positives = 61/140 (43%), Gaps = 41/140 (29%)
Query: 1446 DLRNYLRERCAQLSMHERILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQ 1504
DL N+LR + E +L F+ Q+ +G+ L HRDL + N+LL T +
Sbjct: 125 DLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLL------THGK 178
Query: 1505 LV-ITDFG--------SSYTNKSGLSMQYSSADIELGGNVAL----MAPEVALATPGLFS 1551
+V I DFG S+Y K GN L MAPE +F+
Sbjct: 179 IVKICDFGLARDIMNDSNYVVK---------------GNARLPVKWMAPE------SIFN 217
Query: 1552 FVNYSKSDAWTAGTVAYEIF 1571
V +SD W+ G + +EIF
Sbjct: 218 CVYTFESDVWSYGILLWEIF 237
>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine
Kinases, Class EphB Ephrin Receptors. Protein Tyrosine
Kinase (PTK) family; Ephrin Receptor (EphR) subfamily;
class EphB receptors; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). Class EphB receptors bind to transmembrane
ephrin-B ligands. There are six vertebrate EhpB receptors
(EphB1-6), which display promiscuous interactions with
three ephrin-B ligands. One exception is EphB2, which
also interacts with ephrin A5. EphRs contain an
ephrin-binding domain and two fibronectin repeats
extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting downstream
signals occur bidirectionally in both EphR-expressing
cells (forward signaling) and ephrin-expressing cells
(reverse signaling). Ephrin/EphR interaction mainly
results in cell-cell repulsion or adhesion. EphBRs play
important roles in synapse formation and plasticity,
spine morphogenesis, axon guidance, and angiogenesis. In
the intestinal epithelium, EphBRs are Wnt signaling
target genes that control cell compartmentalization. They
function as suppressors of color cancer progression.
Length = 269
Score = 44.9 bits (106), Expect = 2e-04
Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 29/186 (15%)
Query: 923 NTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 982
N L ++LR+ Q ++ + + + + G+ +L+ HRDL + NIL++ +
Sbjct: 89 NGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSN------ 142
Query: 983 QLV--ITDFG-SSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNY-SK 1036
LV ++DFG S + Y+S+ LGG + + APE ++ + S
Sbjct: 143 -LVCKVSDFGLSRFLEDDTSDPTYTSS---LGGKIPIRWTAPEA-------IAYRKFTSA 191
Query: 1037 SDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQ-----LNTNVPEVMRRLVAKLLEN 1091
SD W+ G V +E+ + Y N D +NA+ Q + P + +L+ +
Sbjct: 192 SDVWSYGIVMWEVMSYGERPYWDMSNQDV-INAIEQDYRLPPPMDCPTALHQLMLDCWQK 250
Query: 1092 DPSDRP 1097
D + RP
Sbjct: 251 DRNARP 256
Score = 41.4 bits (97), Expect = 0.002
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 23/148 (15%)
Query: 1444 NTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 1503
N L ++LR+ Q ++ + + + + G+ +L+ HRDL + NIL++ +
Sbjct: 89 NGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSN------ 142
Query: 1504 QLV--ITDFG-SSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNY-SK 1557
LV ++DFG S + Y+S+ LGG + + APE ++ + S
Sbjct: 143 -LVCKVSDFGLSRFLEDDTSDPTYTSS---LGGKIPIRWTAPEA-------IAYRKFTSA 191
Query: 1558 SDAWTAGTVAYEIFGHDNPFYQSARNTD 1585
SD W+ G V +E+ + Y N D
Sbjct: 192 SDVWSYGIVMWEVMSYGERPYWDMSNQD 219
Score = 30.6 bits (69), Expect = 6.0
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 20/121 (16%)
Query: 221 ITDFG-SSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNY-SKSDAWT 276
++DFG S + Y+S+ LGG + + APE ++ + S SD W+
Sbjct: 147 VSDFGLSRFLEDDTSDPTYTSS---LGGKIPIRWTAPEA-------IAYRKFTSASDVWS 196
Query: 277 AGTVAYEIFGHDNPFYQSARNTDYEVNALPQ-----LNTNVPEVMRRLVAKLLENDPSDR 331
G V +E+ + Y N D +NA+ Q + P + +L+ + D + R
Sbjct: 197 YGIVMWEVMSYGERPYWDMSNQDV-INAIEQDYRLPPPMDCPTALHQLMLDCWQKDRNAR 255
Query: 332 P 332
P
Sbjct: 256 P 256
Score = 30.6 bits (69), Expect = 6.0
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 20/121 (16%)
Query: 662 ITDFG-SSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNY-SKSDAWT 717
++DFG S + Y+S+ LGG + + APE ++ + S SD W+
Sbjct: 147 VSDFGLSRFLEDDTSDPTYTSS---LGGKIPIRWTAPEA-------IAYRKFTSASDVWS 196
Query: 718 AGTVAYEIFGHDNPFYQSARNTDYEVNALPQ-----LNTNVPEVMRRLVAKLLENDPSDR 772
G V +E+ + Y N D +NA+ Q + P + +L+ + D + R
Sbjct: 197 YGIVMWEVMSYGERPYWDMSNQDV-INAIEQDYRLPPPMDCPTALHQLMLDCWQKDRNAR 255
Query: 773 P 773
P
Sbjct: 256 P 256
>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine
Kinase, p21-activated kinase 6. Serine/threonine kinases
(STKs), p21-activated kinase (PAK) 6, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PAK subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PAKs are Rho
family GTPase-regulated kinases that serve as important
mediators in the function of Cdc42 (cell division cycle
42) and Rac. PAKs from higher eukaryotes are classified
into two groups (I and II), according to their
biochemical and structural features. PAK6 belongs to
group II. Group II PAKs contain a PBD (p21-binding
domain) and a C-terminal catalytic domain, but do not
harbor an AID (autoinhibitory domain) or SH3 binding
sites. PAK6 may play a role in stress responses through
its activation by the mitogen-activated protein kinase
(MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is
highly expressed in the brain. It is not required for
viability, but together with PAK5, it is required for
normal levels of locomotion and activity, and for
learning and memory. Increased expression of PAK6 is
found in primary and metastatic prostate cancer. PAK6 may
play a role in the regulation of motility.
Length = 297
Score = 45.0 bits (106), Expect = 2e-04
Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 31/162 (19%)
Query: 949 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADI 1008
+L+ + +L+ HRD+KSD+ILL ++ ++DFG + + S
Sbjct: 126 VLQALCYLHSQGVIHRDIKSDSILLTLDG-----RVKLSDFGFCAQISKDVPKRKS---- 176
Query: 1009 ELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVN 1068
L G MAPEV TP ++ D W+ G + E+ + P++ +D V
Sbjct: 177 -LVGTPYWMAPEVISRTP------YGTEVDIWSLGIMVIEMVDGEPPYF-----SDSPVQ 224
Query: 1069 ALPQLNTNVP----------EVMRRLVAKLLENDPSDRPSAE 1100
A+ +L + P V+R + ++L +P +R +A+
Sbjct: 225 AMKRLRDSPPPKLKNAHKISPVLRDFLERMLTREPQERATAQ 266
Score = 35.4 bits (81), Expect = 0.26
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 16/109 (14%)
Query: 1470 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADI 1529
+L+ + +L+ HRD+KSD+ILL ++ ++DFG + + S
Sbjct: 126 VLQALCYLHSQGVIHRDIKSDSILLTLDG-----RVKLSDFGFCAQISKDVPKRKS---- 176
Query: 1530 ELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFY 1578
L G MAPEV TP ++ D W+ G + E+ + P++
Sbjct: 177 -LVGTPYWMAPEVISRTP------YGTEVDIWSLGIMVIEMVDGEPPYF 218
Score = 32.3 bits (73), Expect = 2.2
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 21/101 (20%)
Query: 245 LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNA 304
L G MAPEV TP ++ D W+ G + E+ + P++ +D V A
Sbjct: 177 LVGTPYWMAPEVISRTP------YGTEVDIWSLGIMVIEMVDGEPPYF-----SDSPVQA 225
Query: 305 LPQLNTNVPE----------VMRRLVAKLLENDPSDRPSAE 335
+ +L + P V+R + ++L +P +R +A+
Sbjct: 226 MKRLRDSPPPKLKNAHKISPVLRDFLERMLTREPQERATAQ 266
Score = 32.3 bits (73), Expect = 2.2
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 21/101 (20%)
Query: 686 LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNA 745
L G MAPEV TP ++ D W+ G + E+ + P++ +D V A
Sbjct: 177 LVGTPYWMAPEVISRTP------YGTEVDIWSLGIMVIEMVDGEPPYF-----SDSPVQA 225
Query: 746 LPQLNTNVPE----------VMRRLVAKLLENDPSDRPSAE 776
+ +L + P V+R + ++L +P +R +A+
Sbjct: 226 MKRLRDSPPPKLKNAHKISPVLRDFLERMLTREPQERATAQ 266
>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, 90 kDa ribosomal protein S6
kinase. Serine/Threonine Kinases (STKs), 90 kDa
ribosomal protein S6 kinase (RSK) subfamily, N-terminal
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The RSK subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. RSKs contain an
N-terminal kinase domain (NTD) from the AGC family and a
C-terminal kinase domain (CTD) from the CAMK family. They
are activated by signaling inputs from extracellular
regulated kinase (ERK) and phosphoinositide dependent
kinase 1 (PDK1). ERK phosphorylates and activates the CTD
of RSK, serving as a docking site for PDK1, which
phosphorylates and activates the NTD, which in turn
phosphorylates all known RSK substrates. RSKs act as
downstream effectors of mitogen-activated protein kinase
(MAPK) and play key roles in mitogen-activated cell
growth, differentiation, and survival. Mammals possess
four RSK isoforms (RSK1-4) from distinct genes. RSK
proteins are also referred to as MAP kinase-activated
protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks.
Length = 318
Score = 45.2 bits (107), Expect = 2e-04
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 30/157 (19%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
+L + HL+ +RDLK +NILLD E+ + +TDFG S + YS
Sbjct: 106 ELALALDHLHSLGIIYRDLKPENILLD--EEG---HIKLTDFGLSKESIDHEKKAYS--- 157
Query: 1008 IELGGNVALMAPEVALATPGLFSFVN---YSKS-DAWTAGTVAYEIFGHDNPFYQSARNT 1063
G V MAPEV VN +++S D W+ G + +E+ PF R
Sbjct: 158 --FCGTVEYMAPEV----------VNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRKE 205
Query: 1064 DYEVNALPQLNTNVPEVM----RRLVAKLLENDPSDR 1096
+ + + +P+ + + L+ L + +P++R
Sbjct: 206 --TMTMILKAKLGMPQFLSPEAQSLLRALFKRNPANR 240
Score = 44.0 bits (104), Expect = 5e-04
Identities = 37/119 (31%), Positives = 53/119 (44%), Gaps = 24/119 (20%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
+L + HL+ +RDLK +NILLD E+ + +TDFG S + YS
Sbjct: 106 ELALALDHLHSLGIIYRDLKPENILLD--EEG---HIKLTDFGLSKESIDHEKKAYS--- 157
Query: 1529 IELGGNVALMAPEVALATPGLFSFVN---YSKS-DAWTAGTVAYEIFGHDNPFYQSARN 1583
G V MAPEV VN +++S D W+ G + +E+ PF R
Sbjct: 158 --FCGTVEYMAPEV----------VNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRK 204
>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine
Kinase, Yeast Sps1/Ste20-related kinase 4.
Serine/threonine kinases (STKs), yeast Sps1/Ste20-related
kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The YSK4 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene
has been isolated. MAPKKKs (MKKKs or MAP3Ks)
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
Length = 265
Score = 44.9 bits (106), Expect = 2e-04
Identities = 45/164 (27%), Positives = 69/164 (42%), Gaps = 29/164 (17%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVIT--DFG-SSYTNKSGLSMQYS 1004
Q+L+GV +L+ + HRD+K +N++L P +I DFG + GL +S
Sbjct: 110 QILDGVAYLHNNCVVHRDIKGNNVML-------MPNGIIKLIDFGCARRLAWVGLHGTHS 162
Query: 1005 SADIELGGNVALMAPEVALATPGLFSFVNYS----KSDAWTAGTVAYEIFGHDNPFYQSA 1060
+ + G MAPEV +N S KSD W+ G +E+ P
Sbjct: 163 NMLKSMHGTPYWMAPEV----------INESGYGRKSDIWSIGCTVFEMATGKPPLASMD 212
Query: 1061 R-NTDYEVNA----LPQLNTNVPEVMRRLVAKLLENDPSDRPSA 1099
R + + A +P+L + V L D +RPSA
Sbjct: 213 RLAAMFYIGAHRGLMPRLPDSFSAAAIDFVTSCLTRDQHERPSA 256
Score = 41.8 bits (98), Expect = 0.002
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 24/109 (22%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVIT--DFG-SSYTNKSGLSMQYS 1525
Q+L+GV +L+ + HRD+K +N++L P +I DFG + GL +S
Sbjct: 110 QILDGVAYLHNNCVVHRDIKGNNVML-------MPNGIIKLIDFGCARRLAWVGLHGTHS 162
Query: 1526 SADIELGGNVALMAPEVALATPGLFSFVNYS----KSDAWTAGTVAYEI 1570
+ + G MAPEV +N S KSD W+ G +E+
Sbjct: 163 NMLKSMHGTPYWMAPEV----------INESGYGRKSDIWSIGCTVFEM 201
>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine
Kinase, PFTAIRE-1 kinase. Serine/Threonine Kinases
(STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PFTAIRE-1 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PFTAIRE-1 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PFTAIRE-1 is widely
expressed except in the spleen and thymus. It is highly
expressed in the brain, heart, pancreas, testis, and
ovary, and is localized in the cytoplasm. It is regulated
by cyclin D3 and is inhibited by the p21 cell cycle
inhibitor. It has also been shown to interact with the
membrane-associated cyclin Y, which recruits the protein
to the plasma membrane.
Length = 303
Score = 44.7 bits (105), Expect = 3e-04
Identities = 63/248 (25%), Positives = 98/248 (39%), Gaps = 28/248 (11%)
Query: 1435 SLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL 1494
+L ++ + +TDL Y+ + L L QLL G+++++ HRDLK N+L+
Sbjct: 77 TLTLVFEYVHTDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLI 136
Query: 1495 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 1554
+ +L + DFG + KS S YS+ + L P+V L +
Sbjct: 137 -----SDTGELKLADFGLARA-KSVPSHTYSNEVVTLW----YRPPDVLLGS------TE 180
Query: 1555 YSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYWHRKWLWQHLVYSHSSTTPSTVAYEIF 1613
YS D W G + E+ F D R +L L + T P
Sbjct: 181 YSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLV--LGTPNEDTWPGV------ 232
Query: 1614 GHDNPFYQSARNTDYEVNALPQLNTNVPEV--MRRLVAKLLENDPSDRPSAELAATVCQL 1671
H P ++ R T Y L Q + V L +KLL+ P +R SA+ A +
Sbjct: 233 -HSLPHFKPERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALSHEYF 291
Query: 1672 YLWAPKHW 1679
P+ W
Sbjct: 292 SDLPPRLW 299
Score = 42.8 bits (100), Expect = 0.001
Identities = 54/237 (22%), Positives = 92/237 (38%), Gaps = 48/237 (20%)
Query: 914 SLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL 973
+L ++ + +TDL Y+ + L L QLL G+++++ HRDLK N+L+
Sbjct: 77 TLTLVFEYVHTDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLI 136
Query: 974 DCSEDNTCPQLVITDFG---------SSYTNKSGLSMQYSSADIELG------------- 1011
+ +L + DFG +Y+N+ +++ Y D+ LG
Sbjct: 137 -----SDTGELKLADFGLARAKSVPSHTYSNEV-VTLWYRPPDVLLGSTEYSTCLDMWGV 190
Query: 1012 GNVALMAPEVALATPGL----------FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR 1061
G + + + A PG+ F + D W H P ++ R
Sbjct: 191 GCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPG--------VHSLPHFKPER 242
Query: 1062 NTDYEVNALPQLNTNVPEV--MRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHW 1116
T Y L Q + V L +KLL+ P +R SA+ A + P+ W
Sbjct: 243 FTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALSHEYFSDLPPRLW 299
>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase,
Fibroblast Growth Factor Receptor 3. Protein Tyrosine
Kinase (PTK) family; Fibroblast Growth Factor Receptor 3
(FGFR3); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. FGFR3 is part of the FGFR
subfamily, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
three immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of FGFRs to their ligands, the FGFs, results in
receptor dimerization and activation, and intracellular
signaling. The binding of FGFs to FGFRs is promiscuous,
in that a receptor may be activated by several ligands
and a ligand may bind to more that one type of receptor.
Many FGFR3 splice variants have been reported with the
IIIb and IIIc isoforms being the predominant forms. FGFR3
IIIc is the isoform expressed in chondrocytes, the cells
affected in dwarfism, while IIIb is expressed in
epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4,
FGF8, FGF9, and FGF23. It is a negative regulator of long
bone growth. In the cochlear duct and in the lens, FGFR3
is involved in differentiation while it appears to have a
role in cell proliferation in epithelial cells. Germline
mutations in FGFR3 are associated with skeletal disorders
including several forms of dwarfism. Some missense
mutations are associated with multiple myeloma and
carcinomas of the bladder and cervix. Overexpression of
FGFR3 is found in thyroid carcinoma.
Length = 334
Score = 44.6 bits (105), Expect = 3e-04
Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 30/164 (18%)
Query: 903 LNPTGGYGRNMSLFILMKKYNT-DLRNYLRER-----------C----AQLSMHERILLF 946
+N G ++ L++L++ + +LR YLR R C QL+ + +
Sbjct: 81 INLLGACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCA 140
Query: 947 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 1006
Q+ G+ +L + HRDL + N+L+ +EDN + I DFG + + ++ Y
Sbjct: 141 YQVARGMEYLASQKCIHRDLAARNVLV--TEDNV---MKIADFGLA---RDVHNIDYYKK 192
Query: 1007 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 1050
V MAPE LF V +SD W+ G + +EIF
Sbjct: 193 TTNGRLPVKWMAPE------ALFDRVYTHQSDVWSFGVLLWEIF 230
Score = 44.6 bits (105), Expect = 3e-04
Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 30/164 (18%)
Query: 1424 LNPTGGYGRNMSLFILMKKYNT-DLRNYLRER-----------C----AQLSMHERILLF 1467
+N G ++ L++L++ + +LR YLR R C QL+ + +
Sbjct: 81 INLLGACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCA 140
Query: 1468 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 1527
Q+ G+ +L + HRDL + N+L+ +EDN + I DFG + + ++ Y
Sbjct: 141 YQVARGMEYLASQKCIHRDLAARNVLV--TEDNV---MKIADFGLA---RDVHNIDYYKK 192
Query: 1528 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 1571
V MAPE LF V +SD W+ G + +EIF
Sbjct: 193 TTNGRLPVKWMAPE------ALFDRVYTHQSDVWSFGVLLWEIF 230
>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein
Serine/Threonine Kinases, Novel Protein Kinase C theta
and delta. Serine/Threonine Kinases (STKs), Novel
Protein Kinase C (nPKC), theta and delta-like isoforms,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The nPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
nPKCs are calcium-independent, but require DAG
(1,2-diacylglycerol) and phosphatidylserine (PS) for
activity. There are four nPKC isoforms, delta, epsilon,
eta, and theta. PKC-theta is selectively expressed in
T-cells and plays an important and non-redundant role in
several aspects of T-cell biology. PKC-delta plays a role
in cell cycle regulation and programmed cell death in
many cell types.
Length = 316
Score = 44.4 bits (105), Expect = 3e-04
Identities = 44/186 (23%), Positives = 79/186 (42%), Gaps = 22/186 (11%)
Query: 915 LFILMKKYNT-DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL 973
LF +M+ N DL +++ + +++ G+ L+ +RDLK DN+LL
Sbjct: 71 LFFVMEYLNGGDLMFHIQS-SGRFDEARARFYAAEIICGLQFLHKKGIIYRDLKLDNVLL 129
Query: 974 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 1033
D + I DFG N +G + G +APE+
Sbjct: 130 DKDG-----HIKIADFGMCKENMNGEGKAST-----FCGTPDYIAPEILKGQ-------K 172
Query: 1034 YSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLE 1090
Y++S D W+ G + YE+ +PF+ + ++ +N P + + + ++KL E
Sbjct: 173 YNESVDWWSFGVLLYEMLIGQSPFHGEDEDELFDSILNDRPHFPRWISKEAKDCLSKLFE 232
Query: 1091 NDPSDR 1096
DP+ R
Sbjct: 233 RDPTKR 238
Score = 44.0 bits (104), Expect = 4e-04
Identities = 39/167 (23%), Positives = 66/167 (39%), Gaps = 28/167 (16%)
Query: 1436 LFILMKKYNT-DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL 1494
LF +M+ N DL +++ + +++ G+ L+ +RDLK DN+LL
Sbjct: 71 LFFVMEYLNGGDLMFHIQS-SGRFDEARARFYAAEIICGLQFLHKKGIIYRDLKLDNVLL 129
Query: 1495 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 1554
D + I DFG N +G + G +APE+
Sbjct: 130 DKDG-----HIKIADFGMCKENMNGEGKAST-----FCGTPDYIAPEILKGQ-------K 172
Query: 1555 YSKS-DAWTAGTVAYEIFGHDNPF--------YQSARNTDYWHRKWL 1592
Y++S D W+ G + YE+ +PF + S N +W+
Sbjct: 173 YNESVDWWSFGVLLYEMLIGQSPFHGEDEDELFDSILNDRPHFPRWI 219
>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine
Kinase, Mammalian Ste20-like protein kinase 4.
Serine/threonine kinases (STKs), mammalian Ste20-like
protein kinase 4 (MST4) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The MST4 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. MST4 is sometimes referred to
as MASK (MST3 and SOK1-related kinase). It plays a role
in mitogen-activated protein kinase (MAPK) signaling
during cytoskeletal rearrangement, morphogenesis, and
apoptosis. It influences cell growth and transformation
by modulating the extracellular signal-regulated kinase
(ERK) pathway. MST4 may also play a role in tumor
formation and progression. It localizes in the Golgi
apparatus by interacting with the Golgi matrix protein
GM130 and may play a role in cell migration.
Length = 277
Score = 44.3 bits (104), Expect = 3e-04
Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 37/168 (22%)
Query: 945 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 1004
+ ++L+G+ +L+ + HRD+K+ N+LL SE + + DF G++ Q +
Sbjct: 106 MLKEILKGLDYLHSEKKIHRDIKAANVLL--SEQG---DVKLADF--------GVAGQLT 152
Query: 1005 SADIE---LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR 1061
I+ G MAPEV + SK+D W+ G A E+ + P
Sbjct: 153 DTQIKRNTFVGTPFWMAPEVIQQS------AYDSKADIWSLGITAIELAKGEPP------ 200
Query: 1062 NTDYE---------VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 1100
N+D N P L + + + L DPS RP+A+
Sbjct: 201 NSDMHPMRVLFLIPKNNPPTLTGEFSKPFKEFIDACLNKDPSFRPTAK 248
Score = 37.7 bits (87), Expect = 0.041
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 22/114 (19%)
Query: 1466 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 1525
+ ++L+G+ +L+ + HRD+K+ N+LL SE + + DF G++ Q +
Sbjct: 106 MLKEILKGLDYLHSEKKIHRDIKAANVLL--SEQG---DVKLADF--------GVAGQLT 152
Query: 1526 SADIE---LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNP 1576
I+ G MAPEV + SK+D W+ G A E+ + P
Sbjct: 153 DTQIKRNTFVGTPFWMAPEVIQQS------AYDSKADIWSLGITAIELAKGEPP 200
>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase,
REarranged during Transfection protein. Protein Tyrosine
Kinase (PTK) family; RET (REarranged during Transfection)
protein; catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. RET is a receptor tyr
kinase (RTK) containing an extracellular region with four
cadherin-like repeats, a calcium-binding site, and a
cysteine-rich domain, a transmembrane segment, and an
intracellular catalytic domain. It is part of a
multisubunit complex that binds glial-derived neurotropic
factor (GDNF) family ligands (GFLs) including GDNF,
neurturin, artemin, and persephin. GFLs bind RET along
with four GPI-anchored coreceptors, bringing two RET
molecules together, leading to autophosphorylation,
activation, and intracellular signaling. RET is essential
for the development of the sympathetic, parasympathetic
and enteric nervous systems, and the kidney. RET
disruption by germline mutations causes diseases in
humans including congenital aganglionosis of the
gastrointestinal tract (Hirschsprung's disease) and three
related inherited cancers: multiple endocrine neoplasia
type 2A (MEN2A), MEN2B, and familial medullary thyroid
carcinoma (FMTC).
Length = 290
Score = 44.2 bits (104), Expect = 3e-04
Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 33/178 (18%)
Query: 937 LSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS---Y 993
L+M + I Q+ G+ +L + HRDL + N+L+ +E I+DFG S Y
Sbjct: 124 LTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLV--AEGRKMK---ISDFGLSRDVY 178
Query: 994 TNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF--- 1050
S + + S I V MA E LF + ++SD W+ G + +EI
Sbjct: 179 EEDSYV--KRSKGRIP----VKWMAIE------SLFDHIYTTQSDVWSFGVLLWEIVTLG 226
Query: 1051 GHDNPFYQSAR-----NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS-AELA 1102
G+ P R T Y + P+ N E M L+ + +P RP+ A+++
Sbjct: 227 GNPYPGIAPERLFNLLKTGYRMER-PE---NCSEEMYNLMLTCWKQEPDKRPTFADIS 280
Score = 41.1 bits (96), Expect = 0.004
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 20/116 (17%)
Query: 1458 LSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS---Y 1514
L+M + I Q+ G+ +L + HRDL + N+L+ +E I+DFG S Y
Sbjct: 124 LTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLV--AEGRKMK---ISDFGLSRDVY 178
Query: 1515 TNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 1570
S + + S I V MA E LF + ++SD W+ G + +EI
Sbjct: 179 EEDSYV--KRSKGRIP----VKWMAIE------SLFDHIYTTQSDVWSFGVLLWEI 222
Score = 30.7 bits (69), Expect = 7.2
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 249 VALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF---GHDNPFYQSAR-----NTDY 300
V MA E LF + ++SD W+ G + +EI G+ P R T Y
Sbjct: 193 VKWMAIE------SLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPERLFNLLKTGY 246
Query: 301 EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS-AELA 337
+ P+ N E M L+ + +P RP+ A+++
Sbjct: 247 RMER-PE---NCSEEMYNLMLTCWKQEPDKRPTFADIS 280
Score = 30.7 bits (69), Expect = 7.2
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 690 VALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF---GHDNPFYQSAR-----NTDY 741
V MA E LF + ++SD W+ G + +EI G+ P R T Y
Sbjct: 193 VKWMAIE------SLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPERLFNLLKTGY 246
Query: 742 EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS-AELA 778
+ P+ N E M L+ + +P RP+ A+++
Sbjct: 247 RMER-PE---NCSEEMYNLMLTCWKQEPDKRPTFADIS 280
>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine
Kinase, Mammalian Ste20-like protein kinase 3.
Serine/threonine kinases (STKs), mammalian Ste20-like
protein kinase 3 (MST3) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The MST3 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. MST3 phosphorylates the STK
NDR and may play a role in cell cycle progression and
cell morphology. It may also regulate paxillin and
consequently, cell migration. MST3 is present in human
placenta, where it plays an essential role in the
oxidative stress-induced apoptosis of trophoblasts in
normal spontaneous delivery. Dysregulation of trophoblast
apoptosis may result in pregnancy complications such as
preeclampsia and intrauterine growth retardation.
Length = 277
Score = 43.9 bits (103), Expect = 4e-04
Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 25/162 (15%)
Query: 945 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 1004
+ ++L+G+ +L+ + HRD+K+ N+LL SE ++ + DF G++ Q +
Sbjct: 106 ILREILKGLDYLHSEKKIHRDIKAANVLL--SEHG---EVKLADF--------GVAGQLT 152
Query: 1005 SADIELG---GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQ-SA 1060
I+ G MAPEV + SK+D W+ G A E+ + P +
Sbjct: 153 DTQIKRNTFVGTPFWMAPEVIKQS------AYDSKADIWSLGITAIELAKGEPPHSELHP 206
Query: 1061 RNTDYEV--NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 1100
+ + N P L N + ++ V L +PS RP+A+
Sbjct: 207 MKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAK 248
Score = 40.8 bits (95), Expect = 0.004
Identities = 47/201 (23%), Positives = 79/201 (39%), Gaps = 61/201 (30%)
Query: 1466 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 1525
+ ++L+G+ +L+ + HRD+K+ N+LL SE ++ + DF G++ Q +
Sbjct: 106 ILREILKGLDYLHSEKKIHRDIKAANVLL--SEHG---EVKLADF--------GVAGQLT 152
Query: 1526 SADIELG---GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR 1582
I+ G MAPEV + SK+D W+ G A E+ + P
Sbjct: 153 DTQIKRNTFVGTPFWMAPEVIKQS------AYDSKADIWSLGITAIELAKGEPP------ 200
Query: 1583 NTDYWHRKWLWQHLVYSHSSTTPSTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPE 1642
HS P V + + +NP P L N +
Sbjct: 201 -----------------HSELHPMKVLF-LIPKNNP---------------PTLEGNYSK 227
Query: 1643 VMRRLVAKLLENDPSDRPSAE 1663
++ V L +PS RP+A+
Sbjct: 228 PLKEFVEACLNKEPSFRPTAK 248
Score = 30.0 bits (67), Expect = 9.8
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 12/130 (9%)
Query: 212 KDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG---GNVALMAPEVALATPGLFSFVN 268
+D +++++ G G++ Q + I+ G MAPEV +
Sbjct: 125 RDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQS------AY 178
Query: 269 YSKSDAWTAGTVAYEIFGHDNPFYQ-SARNTDYEV--NALPQLNTNVPEVMRRLVAKLLE 325
SK+D W+ G A E+ + P + + + N P L N + ++ V L
Sbjct: 179 DSKADIWSLGITAIELAKGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLN 238
Query: 326 NDPSDRPSAE 335
+PS RP+A+
Sbjct: 239 KEPSFRPTAK 248
Score = 30.0 bits (67), Expect = 9.8
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 12/130 (9%)
Query: 653 KDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG---GNVALMAPEVALATPGLFSFVN 709
+D +++++ G G++ Q + I+ G MAPEV +
Sbjct: 125 RDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQS------AY 178
Query: 710 YSKSDAWTAGTVAYEIFGHDNPFYQ-SARNTDYEV--NALPQLNTNVPEVMRRLVAKLLE 766
SK+D W+ G A E+ + P + + + N P L N + ++ V L
Sbjct: 179 DSKADIWSLGITAIELAKGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLN 238
Query: 767 NDPSDRPSAE 776
+PS RP+A+
Sbjct: 239 KEPSFRPTAK 248
>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase,
Cyclin-Dependent protein Kinase 12. Serine/Threonine
Kinases (STKs), Cyclin-Dependent protein Kinase 12
(CDK12) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CDK12 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDK12 is also
called Cdc2-related protein kinase 7 (CRK7) or
Cdc2-related kinase arginine/serine-rich (CrkRS). It is a
unique CDK that contains an arginine/serine-rich (RS)
domain, which is predominantly found in splicing factors.
CDK12 is widely expressed in tissues. It interacts with
cyclins L1 and L2, and plays roles in regulating
transcription and alternative splicing.
Length = 302
Score = 44.4 bits (105), Expect = 4e-04
Identities = 59/266 (22%), Positives = 91/266 (34%), Gaps = 68/266 (25%)
Query: 871 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 930
H N+V + TD + + + +++ + + DL L
Sbjct: 65 HRNIVNLKEIVTD------------------KQDALDFKKDKGAFYLVFEYMDHDLMGLL 106
Query: 931 RERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 990
S QLLEG+ + + HRD+K NILL N Q+ + DFG
Sbjct: 107 ESGLVHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILL-----NNKGQIKLADFG 161
Query: 991 SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEI 1049
+ S S Y++ I L PE+ L Y + D W+ G + E+
Sbjct: 162 LARLYNSEESRPYTNKVITLW----YRPPELLLGEE------RYGPAIDVWSCGCILGEL 211
Query: 1050 FGHDNPFYQSARNTDY-----------------EVNALPQLNTNVPEVMRR--------- 1083
F P +Q+ + +V LP NT P+ R
Sbjct: 212 FTK-KPIFQANQELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSF 270
Query: 1084 -------LVAKLLENDPSDRPSAELA 1102
L+ +L DPS R +AE A
Sbjct: 271 IPTPALDLLDHMLTLDPSKRCTAEEA 296
Score = 40.9 bits (96), Expect = 0.004
Identities = 63/291 (21%), Positives = 98/291 (33%), Gaps = 76/291 (26%)
Query: 1392 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 1451
H N+V + TD + + + +++ + + DL L
Sbjct: 65 HRNIVNLKEIVTD------------------KQDALDFKKDKGAFYLVFEYMDHDLMGLL 106
Query: 1452 RERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 1511
S QLLEG+ + + HRD+K NILL N Q+ + DFG
Sbjct: 107 ESGLVHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILL-----NNKGQIKLADFG 161
Query: 1512 SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEI 1570
+ S S Y++ I L PE+ L Y + D W+ G + E+
Sbjct: 162 LARLYNSEESRPYTNKVITLW----YRPPELLLGEE------RYGPAIDVWSCGCILGEL 211
Query: 1571 FGHDNPFYQSARNTDYWHRKWLWQHLVYSHSSTTPSTVAYEIFGHDNPFYQSARNTDYEV 1630
F P +Q+ + L Q + S +P + +V
Sbjct: 212 FTK-KPIFQANQE--------LAQLELISRLCGSPCPAVWP-----------------DV 245
Query: 1631 NALPQLNTNVPEVMRR----------------LVAKLLENDPSDRPSAELA 1665
LP NT P+ R L+ +L DPS R +AE A
Sbjct: 246 IKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRCTAEEA 296
>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase,
C-terminal Src kinase. Protein Tyrosine Kinase (PTK)
family; C-terminal Src kinase (Csk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases such
as protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. The Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and SH2,
N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. To inhibit Src kinases,
Csk is translocated to the membrane via binding to
specific transmembrane proteins, G-proteins, or adaptor
proteins near the membrane. Csk catalyzes the tyr
phosphorylation of the regulatory C-terminal tail of Src
kinases, resulting in their inactivation. Csk is
expressed in a wide variety of tissues. As a negative
regulator of Src, Csk plays a role in cell proliferation,
survival, and differentiation, and consequently, in
cancer development and progression. In addition, Csk also
shows Src-independent functions. It is a critical
component in G-protein signaling, and plays a role in
cytoskeletal reorganization and cell migration.
Length = 256
Score = 43.8 bits (103), Expect = 4e-04
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 20/126 (15%)
Query: 926 LRNYLRERCAQLSMHERILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 984
L +YLR R + + +L F+ + E + +L + HRDL + N+L+ SEDN
Sbjct: 87 LVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDLAARNVLV--SEDNVAK-- 142
Query: 985 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGT 1044
++DFG L+ + SS V APE AL FS +KSD W+ G
Sbjct: 143 -VSDFG--------LTKEASSTQDTGKLPVKWTAPE-ALREK-KFS----TKSDVWSFGI 187
Query: 1045 VAYEIF 1050
+ +EI+
Sbjct: 188 LLWEIY 193
Score = 43.8 bits (103), Expect = 4e-04
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 20/126 (15%)
Query: 1447 LRNYLRERCAQLSMHERILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 1505
L +YLR R + + +L F+ + E + +L + HRDL + N+L+ SEDN
Sbjct: 87 LVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDLAARNVLV--SEDNVAK-- 142
Query: 1506 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGT 1565
++DFG L+ + SS V APE AL FS +KSD W+ G
Sbjct: 143 -VSDFG--------LTKEASSTQDTGKLPVKWTAPE-ALREK-KFS----TKSDVWSFGI 187
Query: 1566 VAYEIF 1571
+ +EI+
Sbjct: 188 LLWEIY 193
>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein
Serine/Threonine Kinase, STK25 or Yeast
Sps1/Ste20-related kinase 1. Serine/threonine kinases
(STKs), STK25 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The STK25 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. STK25 is also called Ste20/oxidant stress
response kinase 1 (SOK1) or yeast Sps1/Ste20-related
kinase 1 (YSK1). STK25 is localized in the Golgi
apparatus through its interaction with the Golgi matrix
protein GM130. It may play a role in the regulation of
cell migration and polarization. STK25 binds and
phosphorylates CCM3 (cerebral cavernous malformation 3),
also called PCD10 (programmed cell death 10), and may
play a role in apoptosis. Human STK25 is a candidate gene
responsible for pseudopseudohypoparathyroidism (PPHP), a
disease that shares features with the Albright hereditary
osteodystrophy (AHO) phenotype.
Length = 277
Score = 43.9 bits (103), Expect = 4e-04
Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 37/168 (22%)
Query: 945 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 1004
+ ++L+G+ +L+ R HRD+K+ N+LL D + + DF G++ Q +
Sbjct: 106 ILREILKGLDYLHSERKIHRDIKAANVLLSEQGD-----VKLADF--------GVAGQLT 152
Query: 1005 SADIELG---GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR 1061
I+ G MAPEV + F K+D W+ G A E+ + P
Sbjct: 153 DTQIKRNTFVGTPFWMAPEVIKQSAYDF------KADIWSLGITAIELAKGEPP------ 200
Query: 1062 NTDYE---------VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 1100
N+D N+ P L + + V L DP RP+A+
Sbjct: 201 NSDLHPMRVLFLIPKNSPPTLEGQYSKPFKEFVEACLNKDPRFRPTAK 248
Score = 38.1 bits (88), Expect = 0.029
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 22/115 (19%)
Query: 1466 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 1525
+ ++L+G+ +L+ R HRD+K+ N+LL D + + DF G++ Q +
Sbjct: 106 ILREILKGLDYLHSERKIHRDIKAANVLLSEQGD-----VKLADF--------GVAGQLT 152
Query: 1526 SADIELG---GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF 1577
I+ G MAPEV + F K+D W+ G A E+ + P
Sbjct: 153 DTQIKRNTFVGTPFWMAPEVIKQSAYDF------KADIWSLGITAIELAKGEPPN 201
>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase,
Axl. Protein Tyrosine Kinase (PTK) family; Axl;
catalytic (c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates. Axl
is a member of the Axl subfamily, which is composed of
receptor tyr kinases (RTKs) containing an extracellular
ligand-binding region with two immunoglobulin-like
domains followed by two fibronectin type III repeats, a
transmembrane segment, and an intracellular catalytic
domain. Binding to their ligands, Gas6 and protein S,
leads to receptor dimerization, autophosphorylation,
activation, and intracellular signaling. Axl is widely
expressed in a variety of organs and cells including
epithelial, mesenchymal, hematopoietic, as well as
non-transformed cells. Axl signaling is important in many
cellular functions such as survival, anti-apoptosis,
proliferation, migration, and adhesion. Axl was
originally isolated from patients with chronic
myelogenous leukemia and a chronic myeloproliferative
disorder. Axl is overexpressed in many human cancers
including colon, squamous cell, thyroid, breast, and lung
carcinomas.
Length = 272
Score = 43.9 bits (103), Expect = 4e-04
Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 20/161 (12%)
Query: 945 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 1004
T + G+ +L+ HRDL + N +L+ N C + DFG LS +
Sbjct: 117 FMTDIASGMEYLSSKSFIHRDLAARNCMLN-ENMNVC----VADFG--------LSKKIY 163
Query: 1005 SADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT- 1063
+ D G +A M P +A L V +KSD W+ G +EI Y N+
Sbjct: 164 NGDYYRQGRIAKM-PVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENSE 222
Query: 1064 --DY--EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 1100
DY + N L Q + + + L++ +P DRPS E
Sbjct: 223 IYDYLRQGNRLKQ-PPDCLDGLYSLMSSCWLLNPKDRPSFE 262
Score = 39.6 bits (92), Expect = 0.009
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Query: 1466 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 1525
T + G+ +L+ HRDL + N +L+ N C + DFG LS +
Sbjct: 117 FMTDIASGMEYLSSKSFIHRDLAARNCMLN-ENMNVC----VADFG--------LSKKIY 163
Query: 1526 SADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD 1585
+ D G +A M P +A L V +KSD W+ G +EI Y N++
Sbjct: 164 NGDYYRQGRIAKM-PVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENSE 222
Query: 1586 YW 1587
+
Sbjct: 223 IY 224
Score = 33.1 bits (75), Expect = 1.3
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 233 GLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFY 292
GLS + + D G +A M P +A L V +KSD W+ G +EI Y
Sbjct: 157 GLSKKIYNGDYYRQGRIAKM-PVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPY 215
Query: 293 QSARNT---DY--EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 335
N+ DY + N L Q + + + L++ +P DRPS E
Sbjct: 216 PGVENSEIYDYLRQGNRLKQ-PPDCLDGLYSLMSSCWLLNPKDRPSFE 262
Score = 33.1 bits (75), Expect = 1.3
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 674 GLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFY 733
GLS + + D G +A M P +A L V +KSD W+ G +EI Y
Sbjct: 157 GLSKKIYNGDYYRQGRIAKM-PVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPY 215
Query: 734 QSARNT---DY--EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 776
N+ DY + N L Q + + + L++ +P DRPS E
Sbjct: 216 PGVENSEIYDYLRQGNRLKQ-PPDCLDGLYSLMSSCWLLNPKDRPSFE 262
>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine
Kinase, Serum- and Glucocorticoid-induced Kinase 2.
Serine/Threonine Kinases (STKs), Serum- and
Glucocorticoid-induced Kinase (SGK) subfamily, SGK2
isoform, catalytic (c) domain. STKs catalyze the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The SGK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. There are three isoforms of SGK, named SGK1,
SGK2, and SGK3. SGK2 shows a more restricted distribution
that SGK1 and is most abundantly expressed in epithelial
tissues including kidney, liver, pancreas, and the
choroid plexus of the brain. In vitro cellular assays
show that SGK2 can stimulate the activity of ion
channels, the glutamate transporter EEAT4, and the
glutamate receptors, GluR6 and GLUR1.
Length = 321
Score = 44.2 bits (104), Expect = 5e-04
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 22/138 (15%)
Query: 931 RERCAQLSMHERILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDF 989
RERC + R + ++ + +L+ +RDLK +NILLD +V+TDF
Sbjct: 89 RERCF---LEPRARFYAAEVASAIGYLHSLNIIYRDLKPENILLDSQG-----HVVLTDF 140
Query: 990 GSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYE 1048
G K G+ + +++ G +APEV P Y ++ D W G V YE
Sbjct: 141 GLC---KEGVEPEETTS--TFCGTPEYLAPEVLRKEP-------YDRTVDWWCLGAVLYE 188
Query: 1049 IFGHDNPFYQSARNTDYE 1066
+ PFY + Y+
Sbjct: 189 MLYGLPPFYSRDVSQMYD 206
Score = 43.8 bits (103), Expect = 5e-04
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 22/129 (17%)
Query: 1452 RERCAQLSMHERILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDF 1510
RERC + R + ++ + +L+ +RDLK +NILLD +V+TDF
Sbjct: 89 RERCF---LEPRARFYAAEVASAIGYLHSLNIIYRDLKPENILLDSQG-----HVVLTDF 140
Query: 1511 GSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYE 1569
G K G+ + +++ G +APEV P Y ++ D W G V YE
Sbjct: 141 GLC---KEGVEPEETTS--TFCGTPEYLAPEVLRKEP-------YDRTVDWWCLGAVLYE 188
Query: 1570 IFGHDNPFY 1578
+ PFY
Sbjct: 189 MLYGLPPFY 197
>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein
Serine/Threonine Kinases, Mitogen-Activated Protein
Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6
(or MAP4K6) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAP4K4/MAP4K6 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Members of this subfamily
contain an N-terminal catalytic domain and a C-terminal
citron homology (CNH) regulatory domain. MAP4Ks (or
MAPKKKKs) are involved in MAPK signaling pathways that
are important in mediating cellular responses to
extracellular signals by activating a MAPK kinase kinase
(MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated
either by a small GTP-binding protein or by an adaptor
protein, which transmits the signal either directly to a
MAP3K to start the triple kinase core cascade or
indirectly through a mediator kinase, a MAP4K. MAP4K4 is
also called Nck Interacting kinase (NIK). It facilitates
the activation of the MAPKs, extracellular
signal-regulated kinase (ERK) 1, ERK2, and c-Jun
N-terminal kinase (JNK), by phosphorylating and
activating MEKK1. MAP4K4 plays a role in tumor necrosis
factor (TNF) alpha-induced insulin resistance. MAP4K4
silencing in skeletal muscle cells from type II diabetic
patients restores insulin-mediated glucose uptake.
MAP4K4, through JNK, also plays a broad role in cell
motility, which impacts inflammation, homeostasis, as
well as the invasion and spread of cancer. MAP4K4 is
found to be highly expressed in most tumor cell lines
relative to normal tissue. MAP4K6 (also called MINK for
Misshapen/NIKs-related kinase) is activated after Ras
induction and mediates activation of p38 MAPK. MAP4K6
plays a role in cell cycle arrest, cytoskeleton
organization, cell adhesion, and cell motility.
Length = 282
Score = 43.5 bits (102), Expect = 5e-04
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 23/108 (21%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
++L G+ HL+ H+ HRD+K N+LL +N +LV DFG S + D
Sbjct: 129 EILRGLAHLHAHKVIHRDIKGQNVLL---TENAEVKLV--DFGVS-----------AQLD 172
Query: 1008 IELG------GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 1049
+G G MAPEV + +Y +SD W+ G A E+
Sbjct: 173 RTVGRRNTFIGTPYWMAPEVIACDENPDATYDY-RSDIWSLGITAIEM 219
Score = 43.5 bits (102), Expect = 5e-04
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 23/108 (21%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
++L G+ HL+ H+ HRD+K N+LL +N +LV DFG S + D
Sbjct: 129 EILRGLAHLHAHKVIHRDIKGQNVLL---TENAEVKLV--DFGVS-----------AQLD 172
Query: 1529 IELG------GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 1570
+G G MAPEV + +Y +SD W+ G A E+
Sbjct: 173 RTVGRRNTFIGTPYWMAPEVIACDENPDATYDY-RSDIWSLGITAIEM 219
>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase,
Lyn. Protein Tyrosine Kinase (PTK) family; Lyn kinase;
catalytic (c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates. Lyn
is a member of the Src subfamily of proteins, which are
cytoplasmic (or non-receptor) tyr kinases. Src kinases
contain an N-terminal SH4 domain with a myristoylation
site, followed by SH3 and SH2 domains, a tyr kinase
domain, and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated by
phosphorylation at the C-terminal tyr by Csk (C-terminal
Src Kinase). Src proteins are involved in signaling
pathways that regulate cytokine and growth factor
responses, cytoskeleton dynamics, cell proliferation,
survival, and differentiation. Lyn is expressed in B
lymphocytes and myeloid cells. It exhibits both positive
and negative regulatory roles in B cell receptor (BCR)
signaling. Lyn, as well as Fyn and Blk, promotes B cell
activation by phosphorylating ITAMs (immunoreceptor tyr
activation motifs) in CD19 and in Ig components of BCR.
It negatively regulates signaling by its unique ability
to phosphorylate ITIMs (immunoreceptor tyr inhibition
motifs) in cell surface receptors like CD22 and CD5. Lyn
also plays an important role in G-CSF receptor signaling
by phosphorylating a variety of adaptor molecules.
Length = 261
Score = 43.5 bits (102), Expect = 6e-04
Identities = 40/174 (22%), Positives = 69/174 (39%), Gaps = 43/174 (24%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLS 1000
Q+ EG+ ++ HRDL++ N+L+ SE C I DFG + YT + G
Sbjct: 111 QIAEGMAYIERKNYIHRDLRAANVLV--SESLMCK---IADFGLARVIEDNEYTAREGAK 165
Query: 1001 MQYSSADIELGGNVALMAPEVALATPGLFSFVNYS----KSDAWTAGTVAYEIFGHDNPF 1056
+ APE +N+ KSD W+ G + YEI +
Sbjct: 166 FP-----------IKWTAPEA----------INFGSFTIKSDVWSFGILLYEIVTYGKIP 204
Query: 1057 YQSARNTDYEVNA-----LPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV 1105
Y N+D +P++ N P+ + ++ + +RP+ + +V
Sbjct: 205 YPGMSNSDVMSALQRGYRMPRME-NCPDELYDIMKTCWKEKAEERPTFDYLQSV 257
Score = 38.1 bits (88), Expect = 0.030
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 37/128 (28%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLS 1521
Q+ EG+ ++ HRDL++ N+L+ SE C I DFG + YT + G
Sbjct: 111 QIAEGMAYIERKNYIHRDLRAANVLV--SESLMCK---IADFGLARVIEDNEYTAREGAK 165
Query: 1522 MQYSSADIELGGNVALMAPEVALATPGLFSFVNYS----KSDAWTAGTVAYEIFGHDNPF 1577
+ APE +N+ KSD W+ G + YEI +
Sbjct: 166 FP-----------IKWTAPEA----------INFGSFTIKSDVWSFGILLYEIVTYGKIP 204
Query: 1578 YQSARNTD 1585
Y N+D
Sbjct: 205 YPGMSNSD 212
Score = 30.4 bits (68), Expect = 7.3
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 271 KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNA-----LPQLNTNVPEVMRRLVAKLLE 325
KSD W+ G + YEI + Y N+D +P++ N P+ + ++ +
Sbjct: 184 KSDVWSFGILLYEIVTYGKIPYPGMSNSDVMSALQRGYRMPRME-NCPDELYDIMKTCWK 242
Query: 326 NDPSDRPSAELAATV 340
+RP+ + +V
Sbjct: 243 EKAEERPTFDYLQSV 257
Score = 30.4 bits (68), Expect = 7.3
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 712 KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNA-----LPQLNTNVPEVMRRLVAKLLE 766
KSD W+ G + YEI + Y N+D +P++ N P+ + ++ +
Sbjct: 184 KSDVWSFGILLYEIVTYGKIPYPGMSNSDVMSALQRGYRMPRME-NCPDELYDIMKTCWK 242
Query: 767 NDPSDRPSAELAATV 781
+RP+ + +V
Sbjct: 243 EKAEERPTFDYLQSV 257
>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein
Serine/Threonine Kinase, beta-adrenergic receptor kinase.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, beta-adrenergic receptor
kinase (beta-ARK) group, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The GRK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate some
part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. The beta-ARK group is composed of GRK2,
GRK3, and similar proteins. GRK2 and GRK3 are both widely
expressed in many tissues, although GRK2 is present at
higher levels. They contain an N-terminal RGS homology
(RH) domain, a central catalytic domain, and C-terminal
pleckstrin homology (PH) domain that mediates PIP2 and G
protein betagamma-subunit translocation to the membrane.
GRK2 (also called beta-ARK or beta-ARK1) is important in
regulating several cardiac receptor responses. It plays a
role in cardiac development and in hypertension. Deletion
of GRK2 in mice results in embryonic lethality, caused by
hypoplasia of the ventricular myocardium. GRK2 also plays
important roles in the liver (as a regulator of portal
blood pressure), in immune cells, and in the nervous
system. Altered GRK2 expression has been reported in
several disorders including major depression,
schizophrenia, bipolar disorder, and Parkinsonism.
Length = 278
Score = 43.4 bits (102), Expect = 6e-04
Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 27/188 (14%)
Query: 916 FILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDC 975
FIL DL +L + S E +++ G+ H++ +RDLK NILLD
Sbjct: 74 FILDLMNGGDLHYHLSQH-GVFSEAEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLD- 131
Query: 976 SEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG-GNVALMAPEVALATPGLFSFVNY 1034
+ G + GL+ +S G MAPEV L V Y
Sbjct: 132 ------------EHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEV------LQKGVAY 173
Query: 1035 SKSDAW-TAGTVAYEIFGHDNPFYQSARNTDYEVNAL-----PQLNTNVPEVMRRLVAKL 1088
S W + G + +++ +PF Q +E++ + +L + +R L+ L
Sbjct: 174 DSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGL 233
Query: 1089 LENDPSDR 1096
L+ D + R
Sbjct: 234 LQRDVNRR 241
Score = 37.2 bits (86), Expect = 0.056
Identities = 38/145 (26%), Positives = 57/145 (39%), Gaps = 22/145 (15%)
Query: 1437 FILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDC 1496
FIL DL +L + S E +++ G+ H++ +RDLK NILLD
Sbjct: 74 FILDLMNGGDLHYHLSQH-GVFSEAEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLD- 131
Query: 1497 SEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG-GNVALMAPEVALATPGLFSFVNY 1555
+ G + GL+ +S G MAPEV L V Y
Sbjct: 132 ------------EHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEV------LQKGVAY 173
Query: 1556 SKSDAW-TAGTVAYEIFGHDNPFYQ 1579
S W + G + +++ +PF Q
Sbjct: 174 DSSADWFSLGCMLFKLLRGHSPFRQ 198
>gnl|CDD|165476 PHA03210, PHA03210, serine/threonine kinase US3; Provisional.
Length = 501
Score = 44.3 bits (104), Expect = 6e-04
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 25/145 (17%)
Query: 916 FILMKKYNTDLRNYLRERCAQ------LSMHERILLFTQLLEGVTHLNMHRTAHRDLKSD 969
+++ +KY+ DL +++ + L I+ QLL V +++ + HRD+K +
Sbjct: 239 YMITQKYDFDLYSFMYDEAFDWKDRPLLKQTRAIM--KQLLCAVEYIHDKKLIHRDIKLE 296
Query: 970 NILLDCSEDNTCPQLVITDFGSSYT-NKSGLSMQYSSADIELGGNVALMAPEVALATPGL 1028
NI L+C D +V+ DFG++ K + Y G VA +PE+ LA G
Sbjct: 297 NIFLNC--DGK---IVLGDFGTAMPFEKEREAFDYGWV-----GTVATNSPEI-LAGDGY 345
Query: 1029 FSFVNYSKSDAWTAGTVAYEIFGHD 1053
+D W+ G + ++ HD
Sbjct: 346 CEI-----TDIWSCGLILLDMLSHD 365
Score = 44.3 bits (104), Expect = 6e-04
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 25/145 (17%)
Query: 1437 FILMKKYNTDLRNYLRERCAQ------LSMHERILLFTQLLEGVTHLNMHRTAHRDLKSD 1490
+++ +KY+ DL +++ + L I+ QLL V +++ + HRD+K +
Sbjct: 239 YMITQKYDFDLYSFMYDEAFDWKDRPLLKQTRAIM--KQLLCAVEYIHDKKLIHRDIKLE 296
Query: 1491 NILLDCSEDNTCPQLVITDFGSSYT-NKSGLSMQYSSADIELGGNVALMAPEVALATPGL 1549
NI L+C D +V+ DFG++ K + Y G VA +PE+ LA G
Sbjct: 297 NIFLNC--DGK---IVLGDFGTAMPFEKEREAFDYGWV-----GTVATNSPEI-LAGDGY 345
Query: 1550 FSFVNYSKSDAWTAGTVAYEIFGHD 1574
+D W+ G + ++ HD
Sbjct: 346 CEI-----TDIWSCGLILLDMLSHD 365
>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine
Kinase, Serum- and Glucocorticoid-induced Kinase 3.
Serine/Threonine Kinases (STKs), Serum- and
Glucocorticoid-induced Kinase (SGK) subfamily, SGK3
isoform, catalytic (c) domain. STKs catalyze the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The SGK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. There are three isoforms of SGK, named SGK1,
SGK2, and SGK3 (also called cytokine-independent survival
kinase CISK). SGK3 is expressed in most tissues and is
most abundant in the embryo and adult heart and spleen.
It was originally discovered in a screen for
antiapoptotic genes. It phosphorylates and inhibits the
proapoptotic proteins, Bad and FKHRL1. SGK3 also
regulates many transporters, ion channels, and receptors.
It plays a critical role in hair follicle morphogenesis
and hair cycling.
Length = 325
Score = 43.8 bits (103), Expect = 6e-04
Identities = 52/191 (27%), Positives = 78/191 (40%), Gaps = 38/191 (19%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
++ + +L+ +RDLK +NILLD + +V+TDFG K G++ S
Sbjct: 104 EIASALGYLHSINIVYRDLKPENILLD-----SQGHVVLTDFGLC---KEGIAQ--SDTT 153
Query: 1529 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYW 1587
G +APEV P Y + D W G V YE+ PFY R+
Sbjct: 154 TTFCGTPEYLAPEVIRKQP-------YDNTVDWWCLGAVLYEMLYGLPPFY--CRDVAEM 204
Query: 1588 HRKWLWQHLVYS-HSSTTPSTVAYEIFGHD----------------NPFYQSARNTDYEV 1630
+ L + LV +S T ++ E+ D +PF++S TD E
Sbjct: 205 YDNILHKPLVLRPGASLTAWSILEELLEKDRQRRLGAKEDFLEIQEHPFFESLSWTDLEQ 264
Query: 1631 NAL-PQLNTNV 1640
+ P N NV
Sbjct: 265 KKIPPPFNPNV 275
Score = 42.7 bits (100), Expect = 0.001
Identities = 38/147 (25%), Positives = 58/147 (39%), Gaps = 24/147 (16%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
++ + +L+ +RDLK +NILLD + +V+TDFG K G++ S
Sbjct: 104 EIASALGYLHSINIVYRDLKPENILLD-----SQGHVVLTDFGLC---KEGIAQ--SDTT 153
Query: 1008 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDY- 1065
G +APEV P Y + D W G V YE+ PFY Y
Sbjct: 154 TTFCGTPEYLAPEVIRKQP-------YDNTVDWWCLGAVLYEMLYGLPPFYCRDVAEMYD 206
Query: 1066 -----EVNALPQLNTNVPEVMRRLVAK 1087
+ P + ++ L+ K
Sbjct: 207 NILHKPLVLRPGASLTAWSILEELLEK 233
>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine
Kinase, Vascular Endothelial Growth Factor Receptor 2.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR2 (or Flk1) is a member of the VEGFR subfamily of
proteins, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of VEGFRs to their ligands, the VEGFs, leads to
receptor dimerization, activation, and intracellular
signaling. The carboxyl terminus of VEGFR2 plays an
important role in its autophosphorylation and activation.
VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD and VEGFE.
VEGFR2 signaling is implicated in all aspects of normal
and pathological vascular endothelial cell biology. It
induces a variety of cellular effects including
migration, survival, and proliferation. It is critical in
regulating embryonic vascular development and
angiogenesis. VEGFR2 is the major signal transducer in
pathological angiogenesis including cancer and diabetic
retinopathy, and is a target for inhibition in cancer
therapy.
Length = 343
Score = 43.5 bits (102), Expect = 7e-04
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 22/118 (18%)
Query: 937 LSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK 996
L++ + I Q+ +G+ L + HRDL + NILL SE+N + I DFG +
Sbjct: 176 LTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNILL--SENNV---VKICDFGLARD-- 228
Query: 997 SGLSMQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 1050
Y D G+ L MAPE +F V +SD W+ G + +EIF
Sbjct: 229 -----IYKDPDYVRKGDARLPLKWMAPET------IFDRVYTIQSDVWSFGVLLWEIF 275
Score = 43.5 bits (102), Expect = 7e-04
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 22/118 (18%)
Query: 1458 LSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK 1517
L++ + I Q+ +G+ L + HRDL + NILL SE+N + I DFG +
Sbjct: 176 LTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNILL--SENNV---VKICDFGLARD-- 228
Query: 1518 SGLSMQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 1571
Y D G+ L MAPE +F V +SD W+ G + +EIF
Sbjct: 229 -----IYKDPDYVRKGDARLPLKWMAPET------IFDRVYTIQSDVWSFGVLLWEIF 275
>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase,
Cyclin-Dependent protein Kinase 6. Serine/Threonine
Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The CDK6
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDK6 is regulated
by D-type cyclins and INK4 inhibitors. It is active
towards the retinoblastoma (pRb) protein, implicating it
to function in regulating the early G1 phase of the cell
cycle. It is expressed ubiquitously and is localized in
the cytoplasm. It is also present in the ruffling edge of
spreading fibroblasts and may play a role in cell
spreading. It binds to the p21 inhibitor without any
effect on its own activity and it is overexpressed in
squamous cell carcinomas and neuroblastomas. CDK6 has
also been shown to inhibit cell differentiation in many
cell types.
Length = 290
Score = 43.1 bits (101), Expect = 7e-04
Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 36/174 (20%)
Query: 911 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERIL-LFTQLLEGVTHLNMHRTAHRDLKSD 969
R L ++ + + DL YL + E I + QLL G+ L+ HR HRDLK
Sbjct: 80 RETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQ 139
Query: 970 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVAL---- 1023
NIL+ S Q+ + DF GL+ YS V L APEV L
Sbjct: 140 NILVTSSG-----QIKLADF--------GLARIYSFQMALTSVVVTLWYRAPEVLLQSSY 186
Query: 1024 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-----YEVNALPQ 1072
ATP D W+ G + E+F P ++ + + D +V LP
Sbjct: 187 ATP----------VDLWSVGCIFAEMF-RRKPLFRGSSDVDQLGKILDVIGLPG 229
Score = 42.7 bits (100), Expect = 0.001
Identities = 48/161 (29%), Positives = 67/161 (41%), Gaps = 31/161 (19%)
Query: 1432 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERIL-LFTQLLEGVTHLNMHRTAHRDLKSD 1490
R L ++ + + DL YL + E I + QLL G+ L+ HR HRDLK
Sbjct: 80 RETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQ 139
Query: 1491 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVAL---- 1544
NIL+ S Q+ + DF GL+ YS V L APEV L
Sbjct: 140 NILVTSSG-----QIKLADF--------GLARIYSFQMALTSVVVTLWYRAPEVLLQSSY 186
Query: 1545 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD 1585
ATP D W+ G + E+F P ++ + + D
Sbjct: 187 ATP----------VDLWSVGCIFAEMF-RRKPLFRGSSDVD 216
>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase,
Fibroblast Growth Factor Receptor 4. Protein Tyrosine
Kinase (PTK) family; Fibroblast Growth Factor Receptor 4
(FGFR4); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. FGFR4 is part of the FGFR
subfamily, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
three immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of FGFRs to their ligands, the FGFs, results in
receptor dimerization and activation, and intracellular
signaling. The binding of FGFs to FGFRs is promiscuous,
in that a receptor may be activated by several ligands
and a ligand may bind to more that one type of receptor.
Unlike other FGFRs, there is only one splice form of
FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19
is a selective ligand for FGFR4. Although disruption of
FGFR4 in mice causes no obvious phenotype, in vivo
inhibition of FGFR4 in cultured skeletal muscle cells
resulted in an arrest of muscle progenitor
differentiation. FGF6 and FGFR4 are uniquely expressed in
myofibers and satellite cells. FGF6/FGFR4 signaling
appears to play a key role in the regulation of muscle
regeneration. A polymorphism in FGFR4 is found in head
and neck squamous cell carcinoma.
Length = 314
Score = 43.0 bits (101), Expect = 8e-04
Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 29/141 (20%)
Query: 925 DLRNYLRERC---------------AQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSD 969
+LR +LR R QLS + + Q+ G+ +L R HRDL +
Sbjct: 104 NLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAAR 163
Query: 970 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 1029
N+L+ +EDN + I DFG + + + Y V MAPE LF
Sbjct: 164 NVLV--TEDNV---MKIADFGLA---RGVHDIDYYKKTSNGRLPVKWMAPE------ALF 209
Query: 1030 SFVNYSKSDAWTAGTVAYEIF 1050
V +SD W+ G + +EIF
Sbjct: 210 DRVYTHQSDVWSFGILMWEIF 230
Score = 43.0 bits (101), Expect = 8e-04
Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 29/141 (20%)
Query: 1446 DLRNYLRERC---------------AQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSD 1490
+LR +LR R QLS + + Q+ G+ +L R HRDL +
Sbjct: 104 NLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAAR 163
Query: 1491 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 1550
N+L+ +EDN + I DFG + + + Y V MAPE LF
Sbjct: 164 NVLV--TEDNV---MKIADFGLA---RGVHDIDYYKKTSNGRLPVKWMAPE------ALF 209
Query: 1551 SFVNYSKSDAWTAGTVAYEIF 1571
V +SD W+ G + +EIF
Sbjct: 210 DRVYTHQSDVWSFGILMWEIF 230
>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine
Kinase, cAMP-dependent protein kinase. Serine/Threonine
Kinases (STKs), cAMP-dependent protein kinase (PKA)
subfamily, catalytic (c) subunit. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PKA
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This subfamily is composed of the
cAMP-dependent proteins kinases, PKA and PRKX. The
inactive PKA holoenzyme is a heterotetramer composed of
two phosphorylated and active catalytic (C) subunits with
a dimer of regulatory (R) subunits. Activation is
achieved through the binding of the important second
messenger cAMP to the R subunits, which leads to the
dissociation of PKA into the R dimer and two active C
subunits. PKA is present ubiquitously in cells and
interacts with many different downstream targets. It
plays a role in the regulation of diverse processes such
as growth, development, memory, metabolism, gene
expression, immunity, and lipolysis.
Length = 290
Score = 42.9 bits (102), Expect = 0.001
Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 37/144 (25%)
Query: 963 HRDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVA 1015
+RDLK +N+LLD + + ITDFG +YT L G
Sbjct: 124 YRDLKPENLLLD-----SDGYIKITDFGFAKRVKGRTYT---------------LCGTPE 163
Query: 1016 LMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQ 1072
+APE+ L+ Y K+ D W G + YE+ PF+ YE + +
Sbjct: 164 YLAPEIILSKG-------YGKAVDWWALGILIYEMLAGYPPFFDDNPIQIYEKILEGKVR 216
Query: 1073 LNTNVPEVMRRLVAKLLENDPSDR 1096
+ + L+ LL+ D + R
Sbjct: 217 FPSFFSPDAKDLIRNLLQVDLTKR 240
Score = 37.9 bits (89), Expect = 0.034
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 35/103 (33%)
Query: 1484 HRDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVA 1536
+RDLK +N+LLD + + ITDFG +YT L G
Sbjct: 124 YRDLKPENLLLD-----SDGYIKITDFGFAKRVKGRTYT---------------LCGTPE 163
Query: 1537 LMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFY 1578
+APE+ L+ Y K+ D W G + YE+ PF+
Sbjct: 164 YLAPEIILSKG-------YGKAVDWWALGILIYEMLAGYPPFF 199
>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase,
c-Jun N-terminal Kinase 2. Serine/Threonine Kinases
(STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The JNK2 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. JNKs are
mitogen-activated protein kinases (MAPKs) that are
involved in many stress-activated responses including
those during inflammation, neurodegeneration, apoptosis,
and persistent pain sensitization, among others.
Vetebrates harbor three different JNK genes (Jnk1, Jnk2,
and Jnk3). JNK1, like JNK2, is expressed in every cell
and tissue type. Initially it was thought that JNK1 and
JNK2 were functionally redundant as mice deficient in
either genes (Jnk1 or Jnk2) could survive but disruption
of both genes resulted in lethality. However, recent
studies have shown that JNK1 and JNK2 perform distinct
functions through specific binding partners and
substrates. JNK2 is specifically translocated to the
mitochondria during dopaminergic cell death. Specific
substrates include the microtubule-associated proteins
DCX and Tau, as well as TIF-IA which is involved in
ribosomal RNA synthesis regulation. Mice deficient in
Jnk2 show protection against arthritis, type 1 diabetes,
atherosclerosis, abdominal aortic aneurysm, cardiac cell
death, TNF-induced liver damage, and tumor growth,
indicating that JNK2 may play roles in the pathogenesis
of these diseases.
Length = 359
Score = 43.1 bits (101), Expect = 0.001
Identities = 48/162 (29%), Positives = 68/162 (41%), Gaps = 28/162 (17%)
Query: 940 HERI-LLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNTCPQLVITDFGSSYTNK 996
HER+ L Q+L G+ HL+ HRDLK NI++ DC+ L I DFG + T
Sbjct: 122 HERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCT-------LKILDFGLARTAC 174
Query: 997 SGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNP 1055
+ M APEV L + Y ++ D W+ G + E+ +
Sbjct: 175 TNFMMTPYVV------TRYYRAPEVILG-------MGYKENVDIWSVGCIMGELV-KGSV 220
Query: 1056 FYQSARNTDYEVNALPQLNTNVPEVMRRL---VAKLLENDPS 1094
+Q + D + QL T E M RL V +EN P
Sbjct: 221 IFQGTDHIDQWNKVIEQLGTPSAEFMNRLQPTVRNYVENRPQ 262
Score = 39.6 bits (92), Expect = 0.012
Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 1461 HERI-LLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNTCPQLVITDFGSSYTNK 1517
HER+ L Q+L G+ HL+ HRDLK NI++ DC+ L I DFG + T
Sbjct: 122 HERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCT-------LKILDFGLARTAC 174
Query: 1518 SGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNP 1576
+ M APEV L + Y ++ D W+ G + E+ +
Sbjct: 175 TNFMMTPYVV------TRYYRAPEVILG-------MGYKENVDIWSVGCIMGELV-KGSV 220
Query: 1577 FYQSARNTDYWHR 1589
+Q + D W++
Sbjct: 221 IFQGTDHIDQWNK 233
>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine
Kinase, G protein-coupled Receptor Kinase 3.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The GRK subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. GRKs phosphorylate
and regulate G protein-coupled receptors (GPCRs), the
largest superfamily of cell surface receptors which
regulate some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK3 (also known as beta-adrenergic
receptor kinase 2) is widely expressed in many tissues.
GRK3-deficient mice show a lack of olfactory receptor
desensitization and altered regulation of the M2
muscarinic airway. GRK3 is involved in modulating the
cholinergic response of airway smooth muscles. It also
plays a role in dopamine receptor regulation. GRK3
promoter polymorphisms may be associated with bipolar
disorder.
Length = 279
Score = 42.7 bits (100), Expect = 0.001
Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 27/188 (14%)
Query: 916 FILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDC 975
FIL DL +L + S E T+++ G+ H++ +RDLK NILLD
Sbjct: 74 FILDLMNGGDLHYHLSQH-GVFSEKEMRFYATEIILGLEHMHNRFVVYRDLKPANILLD- 131
Query: 976 SEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG-GNVALMAPEVALATPGLFSFVNY 1034
+ G + GL+ +S G MAPEV L Y
Sbjct: 132 ------------EHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEV------LQKGTAY 173
Query: 1035 SKSDAW-TAGTVAYEIFGHDNPFYQSARNTDYEVNALP-QLNTNVPEV----MRRLVAKL 1088
S W + G + +++ +PF Q +E++ + +N +P+ ++ L+ L
Sbjct: 174 DSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTVNVELPDSFSPELKSLLEGL 233
Query: 1089 LENDPSDR 1096
L+ D S R
Sbjct: 234 LQRDVSKR 241
Score = 33.8 bits (77), Expect = 0.65
Identities = 38/145 (26%), Positives = 57/145 (39%), Gaps = 22/145 (15%)
Query: 1437 FILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDC 1496
FIL DL +L + S E T+++ G+ H++ +RDLK NILLD
Sbjct: 74 FILDLMNGGDLHYHLSQH-GVFSEKEMRFYATEIILGLEHMHNRFVVYRDLKPANILLD- 131
Query: 1497 SEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG-GNVALMAPEVALATPGLFSFVNY 1555
+ G + GL+ +S G MAPEV L Y
Sbjct: 132 ------------EHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEV------LQKGTAY 173
Query: 1556 SKSDAW-TAGTVAYEIFGHDNPFYQ 1579
S W + G + +++ +PF Q
Sbjct: 174 DSSADWFSLGCMLFKLLRGHSPFRQ 198
>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase B. Serine/Threonine Kinases
(STKs), Protein Kinase B (PKB) or Akt subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). There are
three PKB isoforms from different genes, PKB-alpha (or
Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. It is activated
downstream of PI3K and plays important roles in diverse
cellular functions including cell survival, growth,
proliferation, angiogenesis, motility, and migration. PKB
also has a central role in a variety of human cancers,
having been implicated in tumor initiation, progression,
and metastasis.
Length = 323
Score = 42.9 bits (101), Expect = 0.001
Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 20/152 (13%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
+++ + +L+ +RDLK +N++LD +D + ITDFG K G+S +
Sbjct: 103 EIVSALGYLHSCDVVYRDLKLENLMLD--KDG---HIKITDFGLC---KEGIS--DGATM 152
Query: 1008 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYE 1066
G +APEV +Y ++ D W G V YE+ PFY +E
Sbjct: 153 KTFCGTPEYLAPEV-------LEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFE 205
Query: 1067 VNALPQLN--TNVPEVMRRLVAKLLENDPSDR 1096
+ + ++ + + L+A LL+ DP R
Sbjct: 206 LILMEEIRFPRTLSPEAKSLLAGLLKKDPKQR 237
Score = 35.2 bits (81), Expect = 0.30
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 18/111 (16%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
+++ + +L+ +RDLK +N++LD +D + ITDFG K G+S +
Sbjct: 103 EIVSALGYLHSCDVVYRDLKLENLMLD--KDG---HIKITDFGLC---KEGIS--DGATM 152
Query: 1529 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFY 1578
G +APEV +Y ++ D W G V YE+ PFY
Sbjct: 153 KTFCGTPEYLAPEV-------LEDNDYGRAVDWWGLGVVMYEMMCGRLPFY 196
Score = 32.5 bits (74), Expect = 2.0
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 221 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGT 279
ITDFG K G+S + G +APEV +Y ++ D W G
Sbjct: 136 ITDFGLC---KEGIS--DGATMKTFCGTPEYLAPEV-------LEDNDYGRAVDWWGLGV 183
Query: 280 VAYEIFGHDNPFYQSARNTDYEVNALPQLN--TNVPEVMRRLVAKLLENDPSDR 331
V YE+ PFY +E+ + ++ + + L+A LL+ DP R
Sbjct: 184 VMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQR 237
Score = 32.5 bits (74), Expect = 2.0
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 662 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGT 720
ITDFG K G+S + G +APEV +Y ++ D W G
Sbjct: 136 ITDFGLC---KEGIS--DGATMKTFCGTPEYLAPEV-------LEDNDYGRAVDWWGLGV 183
Query: 721 VAYEIFGHDNPFYQSARNTDYEVNALPQLN--TNVPEVMRRLVAKLLENDPSDR 772
V YE+ PFY +E+ + ++ + + L+A LL+ DP R
Sbjct: 184 VMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQR 237
>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine
Kinase, Traf2- and Nck-interacting kinase.
Serine/threonine kinases (STKs), Traf2- and
Nck-interacting kinase (TNIK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The TNIK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to mitogen-activated protein kinase (MAPK),
kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks
participate in some MAPK signaling pathways by activating
a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is
an effector of Rap2, a small GTP-binding protein from the
Ras family. TNIK specifically activates the c-Jun
N-terminal kinase (JNK) pathway and plays a role in
regulating the actin cytoskeleton.
Length = 272
Score = 42.4 bits (99), Expect = 0.001
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
++L G++HL+ H+ HRD+K N+LL +N +LV DFG S + + +
Sbjct: 119 EILRGLSHLHQHKVIHRDIKGQNVLL---TENAEVKLV--DFGVSAQLDRTVGRRNT--- 170
Query: 1008 IELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 1049
G MAPEV + ++ KSD W+ G A E+
Sbjct: 171 --FIGTPYWMAPEVIACDENPDATYDF-KSDLWSLGITAIEM 209
Score = 42.4 bits (99), Expect = 0.001
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
++L G++HL+ H+ HRD+K N+LL +N +LV DFG S + + +
Sbjct: 119 EILRGLSHLHQHKVIHRDIKGQNVLL---TENAEVKLV--DFGVSAQLDRTVGRRNT--- 170
Query: 1529 IELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 1570
G MAPEV + ++ KSD W+ G A E+
Sbjct: 171 --FIGTPYWMAPEVIACDENPDATYDF-KSDLWSLGITAIEM 209
>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine
Kinase, Activated Cdc42-associated kinase. Protein
Tyrosine Kinase (PTK) family; Activated Cdc42-associated
kinase (Ack) subfamily; catalytic (c) domain. Ack
subfamily members include Ack1, thirty-eight-negative
kinase 1 (Tnk1), and similar proteins. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Ack subfamily members are
cytoplasmic (or nonreceptor) tyr kinases containing an
N-terminal catalytic domain, an SH3 domain, a
Cdc42-binding CRIB domain, and a proline-rich region.
They are mainly expressed in brain and skeletal tissues
and are involved in the regulation of cell adhesion and
growth, receptor degradation, and axonal guidance. Ack1
is also associated with androgen-independent prostate
cancer progression. Tnk1 regulates TNFalpha signaling and
may play an important role in cell death.
Length = 257
Score = 42.4 bits (100), Expect = 0.001
Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 27/179 (15%)
Query: 930 LRERCAQLSMHERILLF-TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITD 988
LR+ + + + Q+ G+ +L R HRDL + NILL + D+ ++ I D
Sbjct: 86 LRKDALGHFLISTLCDYAVQIANGMRYLESKRFIHRDLAARNILL--ASDD---KVKIGD 140
Query: 989 FGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYE 1048
FG +++ A APE +L T FS SD W G +E
Sbjct: 141 FGLMRALPQNEDHYVMEEHLKV--PFAWCAPE-SLRT-RTFS----HASDVWMFGVTLWE 192
Query: 1049 IFGH-DNPFY-----QSARNTDYEVNALPQ---LNTNVPEVMRRLVAKLLENDPSDRPS 1098
+F + + P+ Q + D E L + ++ VM + A +P+DRP+
Sbjct: 193 MFTYGEEPWAGLSGSQILKKIDKEGERLERPEACPQDIYNVMLQCWAH----NPADRPT 247
Score = 40.4 bits (95), Expect = 0.005
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 14/124 (11%)
Query: 1451 LRERCAQLSMHERILLF-TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITD 1509
LR+ + + + Q+ G+ +L R HRDL + NILL + D+ ++ I D
Sbjct: 86 LRKDALGHFLISTLCDYAVQIANGMRYLESKRFIHRDLAARNILL--ASDD---KVKIGD 140
Query: 1510 FGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYE 1569
FG +++ A APE +L T FS SD W G +E
Sbjct: 141 FGLMRALPQNEDHYVMEEHLKV--PFAWCAPE-SLRT-RTFS----HASDVWMFGVTLWE 192
Query: 1570 IFGH 1573
+F +
Sbjct: 193 MFTY 196
>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the
Serine/Threonine Kinases, TEY Mitogen-Activated Protein
Kinases from Plants. Serine/Threonine Kinases (STKs),
Plant TEY Mitogen-Activated Protein Kinase (MAPK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The TEY
MAPK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKs are important mediators of cellular
responses to extracellular signals. In plants, MAPKs are
associated with physiological, developmental, hormonal,
and stress responses. Some plants show numerous gene
duplications of MAPKs. Arabidopsis thaliana harbors at
least 20 MAPKs, named AtMPK1-20. There are two subtypes
of plant MAPKs based on the conserved phosphorylation
motif present in the activation loop, TEY and TDY. This
subfamily represents the TEY subtype and is further
subdivided into three groups (A, B, and C). Group A is
represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4
(NtNTF4), among others. They are mostly involved in
environmental and hormonal responses. AtMPK3 and AtMPK6
are also key regulators for stomatal development and
patterning. Group B is represented by AtMPK4, AtMPK13,
and NtNTF6, among others. They may be involved in both
cell division and environmental stress response. AtMPK4
also participates in regulating innate immunity. Group C
is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa
MAPK4 (OsMAPK4), among others. They may also be involved
in stress responses. AtMPK1 and AtMPK2 are activated
following mechanical injury and in the presence of stress
chemicals such as jasmonic acid, hydrogen peroxide and
abscisic acid. OsMAPK4 is also called OsMSRMK3 for
Multiple Stress-Responsive MAPK3.
Length = 337
Score = 42.7 bits (101), Expect = 0.001
Identities = 67/254 (26%), Positives = 102/254 (40%), Gaps = 59/254 (23%)
Query: 1439 LMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSE 1498
LM +TDL +R H + L+ QLL G+ +++ HRDLK N+LL+ +
Sbjct: 90 LM---DTDLHQIIRSSQTLSDDHCQYFLY-QLLRGLKYIHSANVLHRDLKPSNLLLNANC 145
Query: 1499 DNTCPQLVITDFGSSYTN--KSGLSMQYSSADIELGGNVALM---APEVALATPGLFSFV 1553
D L I DFG + T K +Y V APE+ L +
Sbjct: 146 D-----LKICDFGLARTTSEKGDFMTEY----------VVTRWYRAPEL------LLNCS 184
Query: 1554 NYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYWHRKWLWQHLVYSHSSTTPSTVAYEI 1612
Y+ + D W+ G + E+ G P + DY H+ L L+ S S
Sbjct: 185 EYTTAIDVWSVGCIFAELLGRK-PLFPG---KDYVHQLKLITELLGSPSEE--------- 231
Query: 1613 FGHDNPFYQSARNTDYEVNALP--------QLNTNVPEVMRRLVAKLLENDPSDRPSAEL 1664
D F ++ + Y + +LP +L + + L+ K+L DPS R + E
Sbjct: 232 ---DLGFIRNEKARRY-IRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEE 287
Query: 1665 AATVCQLYLWAPKH 1678
A + YL A H
Sbjct: 288 A--LAHPYL-ASLH 298
Score = 41.6 bits (98), Expect = 0.003
Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 31/140 (22%)
Query: 918 LMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSE 977
LM +TDL +R H + L+ QLL G+ +++ HRDLK N+LL+ +
Sbjct: 90 LM---DTDLHQIIRSSQTLSDDHCQYFLY-QLLRGLKYIHSANVLHRDLKPSNLLLNANC 145
Query: 978 DNTCPQLVITDFGSSYTN--KSGLSMQYSSADIELGGNVALM---APEVALATPGLFSFV 1032
D L I DFG + T K +Y V APE+ L +
Sbjct: 146 D-----LKICDFGLARTTSEKGDFMTEY----------VVTRWYRAPEL------LLNCS 184
Query: 1033 NYSKS-DAWTAGTVAYEIFG 1051
Y+ + D W+ G + E+ G
Sbjct: 185 EYTTAIDVWSVGCIFAELLG 204
>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, DMPK-related cell division
control protein 42 binding kinase beta. Serine/Threonine
Kinases (STKs), DMPK-like subfamily, DMPK-related cell
division control protein 42 (Cdc42) binding kinase (MRCK)
beta isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
DMPK-like subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MRCK is activated via interaction with the
small GTPase Cdc42. MRCK/Cdc42 signaling mediates
myosin-dependent cell motility. MRCKbeta is expressed
ubiquitously in many tissues.
Length = 331
Score = 42.7 bits (100), Expect = 0.001
Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 30/183 (16%)
Query: 915 LFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 974
L L+ K+ + L E A+ + E +L + ++ HRD+K DN+LLD
Sbjct: 88 LLTLLSKF----EDRLPEDMARFYIAEMVL-------AIHSIHQLHYVHRDIKPDNVLLD 136
Query: 975 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP-GLFSFVN 1033
+ + + DFGS ++Q S A G ++PE+ A G+ +
Sbjct: 137 MNG-----HIRLADFGSCLKMNQDGTVQSSVA----VGTPDYISPEILQAMEDGMGKY-- 185
Query: 1034 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY-------EVNALPQLNTNVPEVMRRLVA 1086
+ D W+ G YE+ + PFY + Y E P T+V E + L+
Sbjct: 186 GPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHEERFQFPSHITDVSEEAKDLIQ 245
Query: 1087 KLL 1089
+L+
Sbjct: 246 RLI 248
Score = 40.4 bits (94), Expect = 0.007
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 23/144 (15%)
Query: 1436 LFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 1495
L L+ K+ + L E A+ + E +L + ++ HRD+K DN+LLD
Sbjct: 88 LLTLLSKF----EDRLPEDMARFYIAEMVL-------AIHSIHQLHYVHRDIKPDNVLLD 136
Query: 1496 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP-GLFSFVN 1554
+ + + DFGS ++Q S A G ++PE+ A G+ +
Sbjct: 137 MNG-----HIRLADFGSCLKMNQDGTVQSSVA----VGTPDYISPEILQAMEDGMGKY-- 185
Query: 1555 YSKSDAWTAGTVAYEIFGHDNPFY 1578
+ D W+ G YE+ + PFY
Sbjct: 186 GPECDWWSLGVCMYEMLYGETPFY 209
>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase,
Fibroblast Growth Factor Receptor 1. Protein Tyrosine
Kinase (PTK) family; Fibroblast Growth Factor Receptor 1
(FGFR1); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. FGFR1 is part of the FGFR
subfamily, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
three immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of FGFRs to their ligands, the FGFs, results in
receptor dimerization and activation, and intracellular
signaling. The binding of FGFs to FGFRs is promiscuous,
in that a receptor may be activated by several ligands
and a ligand may bind to more that one type of receptor.
Alternative splicing of FGFR1 transcripts produces a
variety of isoforms, which are differentially expressed
in cells. FGFR1 binds the ligands, FGF1 and FGF2, with
high affinity and has also been reported to bind FGF4,
FGF6, and FGF9. FGFR1 signaling is critical in the
control of cell migration during embryo development. It
promotes cell proliferation in fibroblasts. Nuclear FGFR1
plays a role in the regulation of transcription.
Mutations, insertions or deletions of FGFR1 have been
identified in patients with Kallman's syndrome (KS), an
inherited disorder characterized by hypogonadotropic
hypogonadism and loss of olfaction. Aberrant FGFR1
expression has been found in some human cancers including
8P11 myeloproliferative syndrome (EMS), breast cancer,
and pancreatic adenocarcinoma.
Length = 307
Score = 42.3 bits (99), Expect = 0.001
Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 35/183 (19%)
Query: 1446 DLRNYLRER---------------CAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSD 1490
+LR YLR R QLS + + Q+ G+ +L + HRDL +
Sbjct: 110 NLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDLAAR 169
Query: 1491 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 1550
N+L+ +EDN + I DFG + + + Y V MAPE LF
Sbjct: 170 NVLV--TEDNV---MKIADFGLA---RDIHHIDYYKKTTNGRLPVKWMAPE------ALF 215
Query: 1551 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYWHRKWLWQHLVYSHSSTTPSTVAY 1610
+ +SD W+ G + +EIF Y + L++ L H PS
Sbjct: 216 DRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEE------LFKLLKEGHRMDKPSNCTN 269
Query: 1611 EIF 1613
E++
Sbjct: 270 ELY 272
Score = 42.3 bits (99), Expect = 0.001
Identities = 40/141 (28%), Positives = 60/141 (42%), Gaps = 29/141 (20%)
Query: 925 DLRNYLRER---------------CAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSD 969
+LR YLR R QLS + + Q+ G+ +L + HRDL +
Sbjct: 110 NLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDLAAR 169
Query: 970 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 1029
N+L+ +EDN + I DFG + + + Y V MAPE LF
Sbjct: 170 NVLV--TEDNV---MKIADFGLA---RDIHHIDYYKKTTNGRLPVKWMAPE------ALF 215
Query: 1030 SFVNYSKSDAWTAGTVAYEIF 1050
+ +SD W+ G + +EIF
Sbjct: 216 DRIYTHQSDVWSFGVLLWEIF 236
>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine
Kinases, Class EphA Ephrin Receptors. Protein Tyrosine
Kinase (PTK) family; Ephrin Receptor (EphR) subfamily;
most class EphA receptors including EphA3, EphA4, EphA5,
and EphA7, but excluding EphA1, EphA2 and EphA10;
catalytic (c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
EphRs comprise the largest subfamily of receptor tyr
kinases (RTKs). In general, class EphA receptors bind
GPI-anchored ephrin-A ligands. There are ten vertebrate
EphA receptors (EphA1-10), which display promiscuous
interactions with six ephrin-A ligands. One exception is
EphA4, which also binds ephrins-B2/B3. EphRs contain an
ephrin-binding domain and two fibronectin repeats
extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting downstream
signals occur bidirectionally in both EphR-expressing
cells (forward signaling) and ephrin-expressing cells
(reverse signaling). Ephrin/EphR interaction mainly
results in cell-cell repulsion or adhesion, making it
important in neural development and plasticity, cell
morphogenesis, cell-fate determination, embryonic
development, tissue patterning, and angiogenesis. EphARs
and ephrin-A ligands are expressed in multiple areas of
the developing brain, especially in the retina and
tectum. They are part of a system controlling
retinotectal mapping.
Length = 267
Score = 42.2 bits (99), Expect = 0.001
Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 27/184 (14%)
Query: 923 NTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 982
N L +LR+ Q ++ + + + + G+ +L+ HRDL + NIL++ +
Sbjct: 89 NGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSN------ 142
Query: 983 QLV--ITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNYSKSD 1038
LV ++DFG S + Y++ GG + + APE A+A F+ S SD
Sbjct: 143 -LVCKVSDFGLSRVLEDDPEAAYTTR----GGKIPIRWTAPE-AIAYRK-FT----SASD 191
Query: 1039 AWTAGTVAYEIFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDP 1093
W+ G V +E+ + Y N D E LP + P + +L+ + D
Sbjct: 192 VWSYGIVMWEVMSYGERPYWEMSNQDVIKAIEEGYRLPA-PMDCPAALHQLMLDCWQKDR 250
Query: 1094 SDRP 1097
++RP
Sbjct: 251 NERP 254
Score = 39.9 bits (93), Expect = 0.009
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 21/146 (14%)
Query: 1444 NTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 1503
N L +LR+ Q ++ + + + + G+ +L+ HRDL + NIL++ +
Sbjct: 89 NGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSN------ 142
Query: 1504 QLV--ITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNYSKSD 1559
LV ++DFG S + Y++ GG + + APE A+A F+ S SD
Sbjct: 143 -LVCKVSDFGLSRVLEDDPEAAYTTR----GGKIPIRWTAPE-AIAYRK-FT----SASD 191
Query: 1560 AWTAGTVAYEIFGHDNPFYQSARNTD 1585
W+ G V +E+ + Y N D
Sbjct: 192 VWSYGIVMWEVMSYGERPYWEMSNQD 217
>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B alpha.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, alpha (or Akt1) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains
an N-terminal pleckstrin homology (PH) domain and a
C-terminal catalytic domain. PKB-alpha is predominantly
expressed in endothelial cells. It is critical for the
regulation of angiogenesis and the maintenance of
vascular integrity. It also plays a role in adipocyte
differentiation. Mice deficient in PKB-alpha exhibit
perinatal morbidity, growth retardation, reduction in
body weight accompanied by reduced sizes of multiple
organs, and enhanced apoptosis in some cell types.
PKB-alpha activity has been reported to be frequently
elevated in breast and prostate cancers. In some cancer
cells, PKB-alpha may act as a suppressor of metastasis.
Length = 325
Score = 42.3 bits (99), Expect = 0.002
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 27/177 (15%)
Query: 948 QLLEGVTHLNMHR-TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN-KSGLSMQYSS 1005
+++ + +L+ + +RDLK +N++LD +D + ITDFG K G +M+
Sbjct: 103 EIVSALDYLHSEKNVVYRDLKLENLMLD--KDG---HIKITDFGLCKEGIKDGATMK--- 154
Query: 1006 ADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTD 1064
G +APEV +Y ++ D W G V YE+ PFY
Sbjct: 155 ---TFCGTPEYLAPEV-------LEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKL 204
Query: 1065 YEVNALPQL---NTNVPEVMRRLVAKLLENDPSDR--PSAELAATVCQLYLWAPKHW 1116
+E+ + ++ T PE + L++ LL+ DP R + A + Q +A W
Sbjct: 205 FELILMEEIRFPRTLSPEA-KSLLSGLLKKDPKQRLGGGPDDAKEIMQHKFFAGIVW 260
Score = 33.8 bits (77), Expect = 0.72
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 21/113 (18%)
Query: 1469 QLLEGVTHLNMHR-TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN-KSGLSMQYSS 1526
+++ + +L+ + +RDLK +N++LD +D + ITDFG K G +M+
Sbjct: 103 EIVSALDYLHSEKNVVYRDLKLENLMLD--KDG---HIKITDFGLCKEGIKDGATMK--- 154
Query: 1527 ADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFY 1578
G +APEV +Y ++ D W G V YE+ PFY
Sbjct: 155 ---TFCGTPEYLAPEV-------LEDNDYGRAVDWWGLGVVMYEMMCGRLPFY 197
Score = 33.5 bits (76), Expect = 1.0
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 21/138 (15%)
Query: 221 ITDFGSSYTN-KSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAG 278
ITDFG K G +M+ G +APEV +Y ++ D W G
Sbjct: 137 ITDFGLCKEGIKDGATMK------TFCGTPEYLAPEV-------LEDNDYGRAVDWWGLG 183
Query: 279 TVAYEIFGHDNPFYQSARNTDYEVNALPQL---NTNVPEVMRRLVAKLLENDPSDR--PS 333
V YE+ PFY +E+ + ++ T PE + L++ LL+ DP R
Sbjct: 184 VVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLSPEA-KSLLSGLLKKDPKQRLGGG 242
Query: 334 AELAATVCQLYLWAPKHW 351
+ A + Q +A W
Sbjct: 243 PDDAKEIMQHKFFAGIVW 260
Score = 33.5 bits (76), Expect = 1.0
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 21/138 (15%)
Query: 662 ITDFGSSYTN-KSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAG 719
ITDFG K G +M+ G +APEV +Y ++ D W G
Sbjct: 137 ITDFGLCKEGIKDGATMK------TFCGTPEYLAPEV-------LEDNDYGRAVDWWGLG 183
Query: 720 TVAYEIFGHDNPFYQSARNTDYEVNALPQL---NTNVPEVMRRLVAKLLENDPSDR--PS 774
V YE+ PFY +E+ + ++ T PE + L++ LL+ DP R
Sbjct: 184 VVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLSPEA-KSLLSGLLKKDPKQRLGGG 242
Query: 775 AELAATVCQLYLWAPKHW 792
+ A + Q +A W
Sbjct: 243 PDDAKEIMQHKFFAGIVW 260
>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases,
Receptor tyrosine kinase-like Orphan Receptors. Protein
Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor (Ror) subfamily; catalytic
(c) domain. The Ror subfamily consists of Ror1, Ror2, and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates. Ror
proteins are orphan receptor tyr kinases (RTKs)
containing an extracellular region with
immunoglobulin-like, cysteine-rich, and kringle domains,
a transmembrane segment, and an intracellular catalytic
domain. Ror RTKs are unrelated to the nuclear receptor
subfamily called retinoid-related orphan receptors
(RORs). RTKs are usually activated through ligand
binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain. Ror kinases are expressed in many
tissues during development. They play important roles in
bone and heart formation. Mutations in human Ror2 result
in two different bone development genetic disorders,
recessive Robinow syndrome and brachydactyly type B.
Drosophila Ror is expressed only in the developing
nervous system during neurite outgrowth and neuronal
differentiation, suggesting a role for Drosophila Ror in
neural development. More recently, mouse Ror1 and Ror2
have also been found to play an important role in
regulating neurite growth in central neurons. Ror1 and
Ror2 are believed to have some overlapping and redundant
functions.
Length = 283
Score = 42.1 bits (99), Expect = 0.002
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 29/119 (24%)
Query: 947 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV--ITDFGSSYTNKSGLSMQYS 1004
Q+ G+ +L+ H HRDL + N L+ L I+DF GLS
Sbjct: 131 IQIAAGMEYLSSHHFVHRDLAARNCLVG-------EGLTVKISDF--------GLSRDIY 175
Query: 1005 SAD-IELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHD-NPFY 1057
SAD + L M PE L G F+ ++SD W+ G V +EIF + P+Y
Sbjct: 176 SADYYRVQSKSLLPVRWMPPEAILY--GKFT----TESDIWSFGVVLWEIFSYGLQPYY 228
Score = 42.1 bits (99), Expect = 0.002
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 29/119 (24%)
Query: 1468 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV--ITDFGSSYTNKSGLSMQYS 1525
Q+ G+ +L+ H HRDL + N L+ L I+DF GLS
Sbjct: 131 IQIAAGMEYLSSHHFVHRDLAARNCLVG-------EGLTVKISDF--------GLSRDIY 175
Query: 1526 SAD-IELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHD-NPFY 1578
SAD + L M PE L G F+ ++SD W+ G V +EIF + P+Y
Sbjct: 176 SADYYRVQSKSLLPVRWMPPEAILY--GKFT----TESDIWSFGVVLWEIFSYGLQPYY 228
>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase,
Fibroblast Growth Factor Receptor 2. Protein Tyrosine
Kinase (PTK) family; Fibroblast Growth Factor Receptor 2
(FGFR2); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. FGFR2 is part of the FGFR
subfamily, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
three immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of FGFRs to their ligands, the FGFs, results in
receptor dimerization and activation, and intracellular
signaling. The binding of FGFs to FGFRs is promiscuous,
in that a receptor may be activated by several ligands
and a ligand may bind to more that one type of receptor.
There are many splice variants of FGFR2 which show
differential expression and binding to FGF ligands.
Disruption of either FGFR2 or FGFR2b is lethal in mice,
due to defects in the placenta or severe impairment of
tissue development including lung, limb, and thyroid,
respectively. Disruption of FGFR2c in mice results in
defective bone and skull development. Genetic alterations
of FGFR2 are associated with many human skeletal
disorders including Apert syndrome, Crouzon syndrome,
Jackson-Weiss syndrome, and Pfeiffer syndrome.
Length = 304
Score = 42.3 bits (99), Expect = 0.002
Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 30/164 (18%)
Query: 903 LNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCA---------------QLSMHERILLF 946
+N G ++ L+++++ + +LR YLR R Q++ + +
Sbjct: 84 INLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCT 143
Query: 947 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 1006
Q+ G+ +L + HRDL + N+L+ +E+N + I DFG + + ++ Y
Sbjct: 144 YQVARGMEYLASQKCIHRDLAARNVLV--TENNV---MKIADFGLA---RDVNNIDYYKK 195
Query: 1007 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 1050
V MAPE LF V +SD W+ G + +EIF
Sbjct: 196 TTNGRLPVKWMAPE------ALFDRVYTHQSDVWSFGVLMWEIF 233
Score = 42.3 bits (99), Expect = 0.002
Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 30/164 (18%)
Query: 1424 LNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCA---------------QLSMHERILLF 1467
+N G ++ L+++++ + +LR YLR R Q++ + +
Sbjct: 84 INLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCT 143
Query: 1468 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 1527
Q+ G+ +L + HRDL + N+L+ +E+N + I DFG + + ++ Y
Sbjct: 144 YQVARGMEYLASQKCIHRDLAARNVLV--TENNV---MKIADFGLA---RDVNNIDYYKK 195
Query: 1528 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 1571
V MAPE LF V +SD W+ G + +EIF
Sbjct: 196 TTNGRLPVKWMAPE------ALFDRVYTHQSDVWSFGVLMWEIF 233
>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein
Kinase Like Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Cyclin-dependent protein kinase like
(CDKL) subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The CDKL
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDKL1-5 and similar proteins. Some CDKLs,
like CDKL1 and CDKL3, may be implicated in transformation
and others, like CDKL3 and CDKL5, are associated with
mental retardation when impaired. CDKL2 plays a role in
learning and memory.
Length = 288
Score = 41.9 bits (99), Expect = 0.002
Identities = 43/224 (19%), Positives = 69/224 (30%), Gaps = 56/224 (25%)
Query: 915 LFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 974
L+++ + L L L QLL+ + + + H HRD+K +NIL+
Sbjct: 75 LYLVFEYVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILV- 133
Query: 975 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA---LMAPEVALATPGLFSF 1031
SE L + DFG + ++ + + VA APE+ L
Sbjct: 134 -SESGV---LKLCDFGFARALRARPASPLTDY-------VATRWYRAPEL------LVGD 176
Query: 1032 VNYSKS-DAWTAGTVAYEIF---------------------------GHDNPFYQSARNT 1063
NY K D W G + E+ H F + R
Sbjct: 177 TNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRFA 236
Query: 1064 DYEVNALPQLNT-------NVPEVMRRLVAKLLENDPSDRPSAE 1100
Q + V + L DP +R + +
Sbjct: 237 GVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCD 280
Score = 40.8 bits (96), Expect = 0.005
Identities = 49/243 (20%), Positives = 79/243 (32%), Gaps = 52/243 (21%)
Query: 1436 LFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 1495
L+++ + L L L QLL+ + + + H HRD+K +NIL+
Sbjct: 75 LYLVFEYVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILV- 133
Query: 1496 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA---LMAPEVALATPGLFSF 1552
SE L + DFG + ++ + + VA APE+ L
Sbjct: 134 -SESGV---LKLCDFGFARALRARPASPLTDY-------VATRWYRAPEL------LVGD 176
Query: 1553 VNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYWHRKWLWQH----LVYSHSSTTPST 1607
NY K D W G + E+ P + + D + +L Q L SH
Sbjct: 177 TNYGKPVDVWAIGCIMAELLD-GEPLFPGDSDID---QLYLIQKCLGPLPPSHQEL---- 228
Query: 1608 VAYEIFGHDNPFYQSARNTDYEVNALPQLNT-------NVPEVMRRLVAKLLENDPSDRP 1660
F + R Q + V + L DP +R
Sbjct: 229 -----------FSSNPRFAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERL 277
Query: 1661 SAE 1663
+ +
Sbjct: 278 TCD 280
>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase,
Receptor tyrosine kinase-like Orphan Receptor 2. Protein
Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor 2 (Ror2); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases such
as protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ror
proteins are orphan receptor tyr kinases (RTKs)
containing an extracellular region with
immunoglobulin-like, cysteine-rich, and kringle domains,
a transmembrane segment, and an intracellular catalytic
domain. Ror RTKs are unrelated to the nuclear receptor
subfamily called retinoid-related orphan receptors
(RORs). RTKs are usually activated through ligand
binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain. Ror2 plays important roles in skeletal
and heart formation. Ror2-deficient mice show widespread
bone abnormalities, ventricular defects in the heart, and
respiratory dysfunction. Mutations in human Ror2 result
in two different bone development genetic disorders,
recessive Robinow syndrome and brachydactyly type B. Ror2
is also implicated in neural development.
Length = 283
Score = 41.9 bits (98), Expect = 0.002
Identities = 55/234 (23%), Positives = 100/234 (42%), Gaps = 45/234 (19%)
Query: 1359 AILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPS 1418
AI K PLR+ + +E M+ + ++ HPN+V + T P S+I+
Sbjct: 39 AIKTLKDKAEGPLREEFK-HEAMMRSRLQ----HPNIVCLLGVVTKEQPL----SMIFSY 89
Query: 1419 ALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMH--ERILLFTQLLEGVTH 1476
+ L+ F++M+ ++D+ + ++ + ++ + + + TQ+ G+
Sbjct: 90 CSHSDLHE----------FLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEF 139
Query: 1477 LNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD-IELGGNV 1535
L+ H H+DL + N+L + D + + GL + +AD +L GN
Sbjct: 140 LSSHHVVHKDLATRNVL-------------VFDKLNVKISDLGLFREVYAADYYKLMGNS 186
Query: 1536 AL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD 1585
L M+PE G FS SD W+ G V +E+F + Y N D
Sbjct: 187 LLPIRWMSPEA--IMYGKFSI----DSDIWSYGVVLWEVFSYGLQPYCGYSNQD 234
Score = 39.2 bits (91), Expect = 0.015
Identities = 49/216 (22%), Positives = 93/216 (43%), Gaps = 44/216 (20%)
Query: 856 RNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSL 915
++E M+ + ++ HPN+V + T P S+I+ + L+
Sbjct: 56 KHEAMMRSRLQ----HPNIVCLLGVVTKEQPL----SMIFSYCSHSDLHE---------- 97
Query: 916 FILMKKYNTDLRNYLRERCAQLSMH--ERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL 973
F++M+ ++D+ + ++ + ++ + + + TQ+ G+ L+ H H+DL + N+L
Sbjct: 98 FLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVL- 156
Query: 974 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD-IELGGNVAL----MAPEVALATPGL 1028
+ D + + GL + +AD +L GN L M+PE G
Sbjct: 157 ------------VFDKLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEA--IMYGK 202
Query: 1029 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD 1064
FS SD W+ G V +E+F + Y N D
Sbjct: 203 FSI----DSDIWSYGVVLWEVFSYGLQPYCGYSNQD 234
Score = 32.7 bits (74), Expect = 1.6
Identities = 44/173 (25%), Positives = 70/173 (40%), Gaps = 27/173 (15%)
Query: 136 EYALKMMFNYSAASNSHAILKAMSKELLPLRKPLR----LNEDMLMNSVENLPPHPNVVV 191
E L M+F+Y + S+ H E L +R P ++D + S ++V
Sbjct: 80 EQPLSMIFSYCSHSDLH--------EFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVT 131
Query: 192 MHFAFTDFVPSIPDSSLIYPKDNTCPQLVITDFGSSYTNKSGLSMQYSSADI-ELGGNVA 250
A +F+ S + KD +++ D + + GL + +AD +L GN
Sbjct: 132 QIAAGMEFL----SSHHVVHKDLATRNVLVFDKLNVKISDLGLFREVYAADYYKLMGNSL 187
Query: 251 L----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD 299
L M+PE G FS SD W+ G V +E+F + Y N D
Sbjct: 188 LPIRWMSPEAI--MYGKFSI----DSDIWSYGVVLWEVFSYGLQPYCGYSNQD 234
Score = 32.7 bits (74), Expect = 1.6
Identities = 44/173 (25%), Positives = 70/173 (40%), Gaps = 27/173 (15%)
Query: 577 EYALKMMFNYSAASNSHAILKAMSKELLPLRKPLR----LNEDMLMNSVENLPPHPNVVV 632
E L M+F+Y + S+ H E L +R P ++D + S ++V
Sbjct: 80 EQPLSMIFSYCSHSDLH--------EFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVT 131
Query: 633 MHFAFTDFVPSIPDSSLIYPKDNTCPQLVITDFGSSYTNKSGLSMQYSSADI-ELGGNVA 691
A +F+ S + KD +++ D + + GL + +AD +L GN
Sbjct: 132 QIAAGMEFL----SSHHVVHKDLATRNVLVFDKLNVKISDLGLFREVYAADYYKLMGNSL 187
Query: 692 L----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD 740
L M+PE G FS SD W+ G V +E+F + Y N D
Sbjct: 188 LPIRWMSPEAI--MYGKFSI----DSDIWSYGVVLWEVFSYGLQPYCGYSNQD 234
>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and
Dbf2p-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), ROCK- and NDR-like
subfamily, fungal Sid2p- and Dbf2p-like proteins,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Sid2p- and Dbf2p-like
group is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. This group
contains fungal kinases including Schizosaccharomyces
pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group
members show similarity to NDR kinases in that they
contain an N-terminal regulatory (NTR) domain and an
insert within the catalytic domain that contains an
auto-inhibitory sequence. Sid2p plays a crucial role in
the septum initiation network (SIN) and in the initiation
of cytokinesis. Dbf2p is important in regulating the
mitotic exit network (MEN) and in cytokinesis.
Length = 333
Score = 42.0 bits (99), Expect = 0.002
Identities = 52/187 (27%), Positives = 72/187 (38%), Gaps = 41/187 (21%)
Query: 925 DLRNYLRERCAQLSMHERILLF--TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 982
D R L + E F ++ E V L+ HRDLK +N L+D S
Sbjct: 87 DFRTLL---NNLGVLSEDHARFYMAEMFEAVDALHELGYIHRDLKPENFLIDASG----- 138
Query: 983 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWT 1041
+ +TDFG S K ++ S G+ MAPEV Y + D W+
Sbjct: 139 HIKLTDFGLS---KGIVTYANSVV-----GSPDYMAPEVLRGK-------GYDFTVDYWS 183
Query: 1042 AGTVAYE-IFGHDNPFYQSARNTDYEVNAL--------PQLNTNVPEVMRR---LVAKLL 1089
G + YE + G PF S N +E N P + + L+ KL+
Sbjct: 184 LGCMLYEFLCGF-PPFSGSTPNETWE-NLKYWKETLQRPVYDDPRFNLSDEAWDLITKLI 241
Query: 1090 ENDPSDR 1096
NDPS R
Sbjct: 242 -NDPSRR 247
Score = 41.6 bits (98), Expect = 0.003
Identities = 43/151 (28%), Positives = 58/151 (38%), Gaps = 33/151 (21%)
Query: 1446 DLRNYLRERCAQLSMHERILLF--TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 1503
D R L + E F ++ E V L+ HRDLK +N L+D S
Sbjct: 87 DFRTLL---NNLGVLSEDHARFYMAEMFEAVDALHELGYIHRDLKPENFLIDASG----- 138
Query: 1504 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWT 1562
+ +TDFG S K ++ S G+ MAPEV Y + D W+
Sbjct: 139 HIKLTDFGLS---KGIVTYANSVV-----GSPDYMAPEVLRGK-------GYDFTVDYWS 183
Query: 1563 AGTVAYE-IFGHDNPFYQSA-----RNTDYW 1587
G + YE + G PF S N YW
Sbjct: 184 LGCMLYEFLCGF-PPFSGSTPNETWENLKYW 213
>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine
Kinase, Ste20-like kinase. Serine/threonine kinases
(STKs), Ste20-like kinase (SLK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. SLK promotes
apoptosis through apoptosis signal-regulating kinase 1
(ASK1) and the mitogen-activated protein kinase (MAPK)
p38. It acts as a MAPK kinase kinase (MAPKKK) by
phosphorylating ASK1, resulting in the phosphorylation of
p38. SLK also plays a role in mediating actin
reorganization. It is part of a microtubule-associated
complex that is targeted at adhesion sites, and is
required in focal adhesion turnover and in regulating
cell migration.
Length = 282
Score = 41.9 bits (98), Expect = 0.002
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
Q LE + +L+ ++ HRDLK+ NIL D + + DFG S N + + S
Sbjct: 111 QTLEALNYLHENKIIHRDLKAGNILFTLDGD-----IKLADFGVSAKNTRTIQRRDS--- 162
Query: 1008 IELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQ 1058
G MAPEV + +Y K+D W+ G E+ + P ++
Sbjct: 163 --FIGTPYWMAPEVVMCETSKDRPYDY-KADVWSLGITLIEMAQIEPPHHE 210
Score = 41.9 bits (98), Expect = 0.002
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
Q LE + +L+ ++ HRDLK+ NIL D + + DFG S N + + S
Sbjct: 111 QTLEALNYLHENKIIHRDLKAGNILFTLDGD-----IKLADFGVSAKNTRTIQRRDS--- 162
Query: 1529 IELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQ 1579
G MAPEV + +Y K+D W+ G E+ + P ++
Sbjct: 163 --FIGTPYWMAPEVVMCETSKDRPYDY-KADVWSLGITLIEMAQIEPPHHE 210
>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase,
Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase;
catalytic (c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates. Yes
(or c-Yes) is a member of the Src subfamily of proteins,
which are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the C-terminal
tyr by Csk (C-terminal Src Kinase). Src proteins are
involved in signaling pathways that regulate cytokine and
growth factor responses, cytoskeleton dynamics, cell
proliferation, survival, and differentiation. c-Yes
kinase is the cellular homolog of the oncogenic protein
(v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma
viruses. It displays functional overlap with other Src
subfamily members, particularly Src. It also shows some
unique functions such as binding to occludins,
transmembrane proteins that regulate extracellular
interactions in tight junctions. Yes also associates with
a number of proteins in different cell types that Src
does not interact with, like JAK2 and gp130 in
pre-adipocytes, and Pyk2 in treated pulmonary vein
endothelial cells. Although the biological function of
Yes remains unclear, it appears to have a role in
regulating cell-cell interactions and vesicle trafficking
in polarized cells.
Length = 260
Score = 41.6 bits (97), Expect = 0.002
Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 42/200 (21%)
Query: 926 LRNYLRERCAQ-LSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 984
L ++L+E + L + + + + Q+ +G+ ++ HRDL++ NIL+ ++ C
Sbjct: 87 LLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILV--GDNLVCK-- 142
Query: 985 VITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS 1037
I DFG + YT + G + APE AL G F+ KS
Sbjct: 143 -IADFGLARLIEDNEYTARQGAKFP-----------IKWTAPEAALY--GRFTI----KS 184
Query: 1038 DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLN--------TNVPEVMRRLVAKLL 1089
D W+ G + E+ Y N + L Q+ PE + L+
Sbjct: 185 DVWSFGILLTELVTKGRVPYPGMVNRE----VLEQVERGYRMPCPQGCPESLHELMKLCW 240
Query: 1090 ENDPSDRPSAELAATVCQLY 1109
+ DP +RP+ E + + Y
Sbjct: 241 KKDPDERPTFEYIQSFLEDY 260
Score = 35.4 bits (81), Expect = 0.21
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 30/132 (22%)
Query: 1447 LRNYLRERCAQ-LSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 1505
L ++L+E + L + + + + Q+ +G+ ++ HRDL++ NIL+ ++ C
Sbjct: 87 LLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILV--GDNLVCK-- 142
Query: 1506 VITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS 1558
I DFG + YT + G + APE AL G F+ KS
Sbjct: 143 -IADFGLARLIEDNEYTARQGAKFP-----------IKWTAPEAALY--GRFTI----KS 184
Query: 1559 DAWTAGTVAYEI 1570
D W+ G + E+
Sbjct: 185 DVWSFGILLTEL 196
>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine
Kinase, MAP/ERK kinase kinase 2. Serine/threonine
kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK2 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates the MAPK kinase MEK5 (or
MKK5), which in turn phosphorylates and activates
extracellular signal-regulated kinase 5 (ERK5). The ERK5
cascade plays roles in promoting cell proliferation,
differentiation, neuronal survival, and neuroprotection.
MEKK2 also activates ERK1/2, c-Jun N-terminal kinase
(JNK) and p38 through their respective MAPKKs MEK1/2,
JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays
roles in T cell receptor signaling, immune synapse
formation, cytokine gene expression, as well as in EGF
and FGF receptor signaling.
Length = 265
Score = 41.6 bits (97), Expect = 0.002
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 28/162 (17%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK----SGLSMQY 1003
Q+LEGV++L+ + HRD+K NIL D + + + DFG+S + SG M+
Sbjct: 114 QILEGVSYLHSNMIVHRDIKGANILRDSVGN-----VKLGDFGASKRLQTICLSGTGMK- 167
Query: 1004 SSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQ-SAR 1061
+ G M+PEV S Y K+D W+ G E+ P+ + A
Sbjct: 168 -----SVTGTPYWMSPEV-------ISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFEAM 215
Query: 1062 NTDYEVNAL---PQLNTNVPEVMRRLVAKLLENDPSDRPSAE 1100
+++ P L +V + R + ++ + RPSA+
Sbjct: 216 AAIFKIATQPTNPVLPPHVSDHCRDFLKRIFV-EAKLRPSAD 256
Score = 39.6 bits (92), Expect = 0.009
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 23/114 (20%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK----SGLSMQY 1524
Q+LEGV++L+ + HRD+K NIL D + + + DFG+S + SG M+
Sbjct: 114 QILEGVSYLHSNMIVHRDIKGANILRDSVGN-----VKLGDFGASKRLQTICLSGTGMK- 167
Query: 1525 SSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPF 1577
+ G M+PEV S Y K+D W+ G E+ P+
Sbjct: 168 -----SVTGTPYWMSPEV-------ISGEGYGRKADIWSVGCTVVEMLTEKPPW 209
>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Ephrin Receptor (EphR) subfamily; catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). They can be classified into two classes (EphA and
EphB), according to their extracellular sequences, which
largely correspond to binding preferences for either
GPI-anchored ephrin-A ligands or transmembrane ephrin-B
ligands. Vertebrates have ten EphA and six EhpB
receptors, which display promiscuous ligand interactions
within each class. EphRs contain an ephrin binding domain
and two fibronectin repeats extracellularly, a
transmembrane segment, and a cytoplasmic tyr kinase
domain. Binding of the ephrin ligand to EphR requires
cell-cell contact since both are anchored to the plasma
membrane. This allows ephrin/EphR dimers to form, leading
to the activation of the intracellular tyr kinase domain.
The resulting downstream signals occur bidirectionally in
both EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). The main
effect of ephrin/EphR interaction is cell-cell repulsion
or adhesion. Ephrin/EphR signaling is important in neural
development and plasticity, cell morphogenesis and
proliferation, cell-fate determination, embryonic
development, tissue patterning, and angiogenesis.
Length = 266
Score = 41.6 bits (98), Expect = 0.002
Identities = 46/193 (23%), Positives = 82/193 (42%), Gaps = 46/193 (23%)
Query: 923 NTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 982
N L +LRE + ++ + + + + G+ +L+ HRDL + NIL+ + + C
Sbjct: 89 NGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMNYVHRDLAARNILV--NSNLVCK 146
Query: 983 QLVITDFG---------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 1033
++DFG ++YT K G + APE A+A F+
Sbjct: 147 ---VSDFGLSRRLEDSEATYTTKGGKI------------PIRWTAPE-AIAY-RKFT--- 186
Query: 1034 YSKSDAWTAGTVAYEI--FGHDNPFYQ-------SARNTDYEVNALPQLNTNVPEVMRRL 1084
S SD W+ G V +E+ +G + P++ A Y LP + P + +L
Sbjct: 187 -SASDVWSFGIVMWEVMSYG-ERPYWDMSNQDVIKAVEDGYR---LPP-PMDCPSALYQL 240
Query: 1085 VAKLLENDPSDRP 1097
+ + D ++RP
Sbjct: 241 MLDCWQKDRNERP 253
Score = 38.5 bits (90), Expect = 0.020
Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 35/146 (23%)
Query: 1444 NTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 1503
N L +LRE + ++ + + + + G+ +L+ HRDL + NIL+ + + C
Sbjct: 89 NGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMNYVHRDLAARNILV--NSNLVCK 146
Query: 1504 QLVITDFG---------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 1554
++DFG ++YT K G + APE A+A F+
Sbjct: 147 ---VSDFGLSRRLEDSEATYTTKGGKI------------PIRWTAPE-AIAY-RKFT--- 186
Query: 1555 YSKSDAWTAGTVAYEI--FGHDNPFY 1578
S SD W+ G V +E+ +G + P++
Sbjct: 187 -SASDVWSFGIVMWEVMSYG-ERPYW 210
>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 7. Protein kinases (PKs), MAP
kinase kinase 7 (MKK7) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK7 subfamily is part of a
larger superfamily that includes the catalytic domains of
other protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling pathways
are important mediators of cellular responses to
extracellular signals. The pathways involve a triple
kinase core cascade comprising the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7
is a dual-specificity PK that phosphorylates and
activates its downstream target, c-Jun N-terminal kinase
(JNK), on specific threonine and tyrosine residues.
Although MKK7 is capable of dual phosphorylation, it
prefers to phosphorylate the threonine residue of JNK.
Thus, optimal activation of JNK requires both MKK4 (not
included in this subfamily) and MKK7. MKK7 is primarily
activated by cytokines. MKK7 is essential for liver
formation during embryogenesis. It plays roles in G2/M
cell cycle arrest and cell growth. In addition, it is
involved in the control of programmed cell death, which
is crucial in oncogenesis, cancer chemoresistance, and
antagonism to TNFalpha-induced killing, through its
inhibition by Gadd45beta and the subsequent suppression
of the JNK cascade.
Length = 296
Score = 41.6 bits (98), Expect = 0.002
Identities = 42/148 (28%), Positives = 54/148 (36%), Gaps = 25/148 (16%)
Query: 959 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMA 1018
H HRD+K NILLD S + + DFG SG + S A G A MA
Sbjct: 134 HGVIHRDVKPSNILLDASG-----NVKLCDFGI-----SG-RLVDSKAKTRSAGCAAYMA 182
Query: 1019 PEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV------NALP 1071
PE + P Y ++D W+ G E+ P+ T++EV P
Sbjct: 183 PE-RIDPPDPNP--KYDIRADVWSLGISLVELATGQFPYKNC--KTEFEVLTKILQEEPP 237
Query: 1072 QL--NTNVPEVMRRLVAKLLENDPSDRP 1097
L N V L D RP
Sbjct: 238 SLPPNEGFSPDFCSFVDLCLTKDHRKRP 265
Score = 34.7 bits (80), Expect = 0.42
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 1480 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMA 1539
H HRD+K NILLD S + + DFG SG + S A G A MA
Sbjct: 134 HGVIHRDVKPSNILLDASG-----NVKLCDFGI-----SG-RLVDSKAKTRSAGCAAYMA 182
Query: 1540 PEVALATPGLFSFVNYS-KSDAWTAGTVAYEI 1570
PE + P Y ++D W+ G E+
Sbjct: 183 PE-RIDPPDPNP--KYDIRADVWSLGISLVEL 211
>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine
Kinase, Insulin-like Growth Factor-1 Receptor. Protein
Tyrosine Kinase (PTK) family; Insulin-like Growth
Factor-1 Receptor (IGF-1R); catalytic (c) domain. The
PTKc family is part of a larger superfamily that includes
the catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. IGF-1R is
a receptor tyr kinases (RTK) that is composed of two
alphabeta heterodimers. Binding of the ligand (IGF-1 or
IGF-2) to the extracellular alpha subunit activates the
intracellular tyr kinase domain of the transmembrane beta
subunit. Receptor activation leads to
autophosphorylation, which stimulates downstream kinase
activities and biological function. IGF-1R signaling is
important in the differentiation, growth, and survival of
normal cells. In cancer cells, where it is frequently
overexpressed, IGF-1R is implicated in proliferation, the
suppression of apoptosis, invasion, and metastasis.
IGF-1R is being developed as a therapeutic target in
cancer treatment.
Length = 277
Score = 41.6 bits (97), Expect = 0.002
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 41/205 (20%)
Query: 914 SLFILMKKYNTDLRNYLRERCAQL---------SMHERILLFTQLLEGVTHLNMHRTAHR 964
+L I+ DL++YLR ++ S+ + I + ++ +G+ +LN ++ HR
Sbjct: 84 TLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANKFVHR 143
Query: 965 DLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALM 1017
DL + N ++ +ED T + I DFG + Y K G + V M
Sbjct: 144 DLAARNCMV--AEDFT---VKIGDFGMTRDIYETDYYRKGGKGLL----------PVRWM 188
Query: 1018 APEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQL 1073
+PE G+F+ + SD W+ G V +EI YQ N L
Sbjct: 189 SPES--LKDGVFT----TYSDVWSFGVVLWEIATLAEQPYQGMSNEQVLRFVMEGGLLDK 242
Query: 1074 NTNVPEVMRRLVAKLLENDPSDRPS 1098
N P+++ L+ + +P RPS
Sbjct: 243 PDNCPDMLFELMRMCWQYNPKMRPS 267
Score = 38.1 bits (88), Expect = 0.032
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 37/165 (22%)
Query: 1435 SLFILMKKYNTDLRNYLRERCAQL---------SMHERILLFTQLLEGVTHLNMHRTAHR 1485
+L I+ DL++YLR ++ S+ + I + ++ +G+ +LN ++ HR
Sbjct: 84 TLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANKFVHR 143
Query: 1486 DLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALM 1538
DL + N ++ +ED T + I DFG + Y K G + V M
Sbjct: 144 DLAARNCMV--AEDFT---VKIGDFGMTRDIYETDYYRKGGKGLL----------PVRWM 188
Query: 1539 APEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARN 1583
+PE G+F+ + SD W+ G V +EI YQ N
Sbjct: 189 SPES--LKDGVFT----TYSDVWSFGVVLWEIATLAEQPYQGMSN 227
>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase,
Tropomyosin Related Kinase A. Protein Tyrosine Kinase
(PTK) family; Tropomyosin Related Kinase A (TrkA);
catalytic (c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
TrkA is a member of the Trk subfamily of proteins, which
are receptor tyr kinases (RTKs) containing an
extracellular region with arrays of leucine-rich motifs
flanked by two cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment, and
an intracellular catalytic domain. Binding of TrkA to its
ligand, nerve growth factor (NGF), results in receptor
oligomerization and activation of the catalytic domain.
TrkA is expressed mainly in neural-crest-derived sensory
and sympathetic neurons of the peripheral nervous system,
and in basal forebrain cholinergic neurons of the central
nervous system. It is critical for neuronal growth,
differentiation and survival. Alternative TrkA splicing
has been implicated as a pivotal regulator of
neuroblastoma (NB) behavior. Normal TrkA expression is
associated with better NB prognosis, while the
hypoxia-regulated TrkAIII splice variant promotes NB
pathogenesis and progression. Aberrant TrkA expression
has also been demonstrated in non-neural tumors including
prostate, breast, lung, and pancreatic cancers.
Length = 280
Score = 41.5 bits (97), Expect = 0.003
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 27/132 (20%)
Query: 934 CAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV--ITDFGS 991
QL++ + + + +Q+ G+ +L HRDL + N L+ LV I DFG
Sbjct: 116 PGQLTLGQMLAIASQIASGMVYLASLHFVHRDLATRNCLVG-------QGLVVKIGDFGM 168
Query: 992 SYTNKSGLSMQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAY 1047
S YS+ +GG L M PE L F+ ++SD W+ G V +
Sbjct: 169 SRD-------IYSTDYYRVGGRTMLPIRWMPPESILYRK--FT----TESDIWSFGVVLW 215
Query: 1048 EIFGH-DNPFYQ 1058
EIF + P+YQ
Sbjct: 216 EIFTYGKQPWYQ 227
Score = 41.5 bits (97), Expect = 0.003
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 27/132 (20%)
Query: 1455 CAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV--ITDFGS 1512
QL++ + + + +Q+ G+ +L HRDL + N L+ LV I DFG
Sbjct: 116 PGQLTLGQMLAIASQIASGMVYLASLHFVHRDLATRNCLVG-------QGLVVKIGDFGM 168
Query: 1513 SYTNKSGLSMQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAY 1568
S YS+ +GG L M PE L F+ ++SD W+ G V +
Sbjct: 169 SRD-------IYSTDYYRVGGRTMLPIRWMPPESILYRK--FT----TESDIWSFGVVLW 215
Query: 1569 EIFGH-DNPFYQ 1579
EIF + P+YQ
Sbjct: 216 EIFTYGKQPWYQ 227
>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase
3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3)-like subfamily, catalytic (c) domain,
functionally uncharacterized subgroup 1. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK3-like subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The MEKK3-like subfamily is composed of MEKK3,
MEKK2, and related proteins, all containing an N-terminal
PB1 domain, which mediates oligomerization, and a
C-terminal catalytic domain. MEKK2 and MEKK3 are
mitogen-activated protein kinase (MAPK) kinase kinases
(MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate
and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks),
which in turn phosphorylate and activate MAPKs during
signaling cascades that are important in mediating
cellular responses to extracellular signals. MEKK2 and
MEKK3 activate MEK5 (also called MKK5), which activates
extracellular signal-regulated kinase 5 (ERK5). The ERK5
cascade plays roles in promoting cell proliferation,
differentiation, neuronal survival, and neuroprotection.
MEKK3 plays an essential role in embryonic angiogenesis
and early heart development. MEKK2 and MEKK3 can also
activate the MAPKs, c-Jun N-terminal kinase (JNK) and
p38, through their respective MAPKKs.
Length = 264
Score = 41.2 bits (96), Expect = 0.003
Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 34/165 (20%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
Q+L+GV++L+ + HRD+K NIL D + + + + DFG+S K ++ S
Sbjct: 114 QILQGVSYLHSNMIVHRDIKGANILRDSAGN-----VKLGDFGAS---KRIQTICMSGTG 165
Query: 1008 IE-LGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDY 1065
I+ + G M+PEV S Y K+D W+ E+ P+ +Y
Sbjct: 166 IKSVTGTPYWMSPEV-------ISGEGYGRKADVWSVACTVVEMLTEKPPW------AEY 212
Query: 1066 EVNAL----------PQLNTNVPEVMRRLVAKLLENDPSDRPSAE 1100
E A P L V + R + ++ + RP+AE
Sbjct: 213 EAMAAIFKIATQPTKPMLPDGVSDACRDFLKQIFVEE-KRRPTAE 256
Score = 38.5 bits (89), Expect = 0.023
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 17/111 (15%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
Q+L+GV++L+ + HRD+K NIL D + + + + DFG+S K ++ S
Sbjct: 114 QILQGVSYLHSNMIVHRDIKGANILRDSAGN-----VKLGDFGAS---KRIQTICMSGTG 165
Query: 1529 IE-LGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPF 1577
I+ + G M+PEV S Y K+D W+ E+ P+
Sbjct: 166 IKSVTGTPYWMSPEV-------ISGEGYGRKADVWSVACTVVEMLTEKPPW 209
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 42.0 bits (98), Expect = 0.003
Identities = 60/217 (27%), Positives = 86/217 (39%), Gaps = 42/217 (19%)
Query: 912 NMSLFILMKKYNT-DL-RNYLRERC----AQLSMHERILLFTQLLEGVTHL-------NM 958
N L+ILM+ + DL RN ++C ++ H + + QLL + + N
Sbjct: 86 NQKLYILMEFCDAGDLSRNI--QKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNG 143
Query: 959 HRTAHRDLKSDNILLD------------CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 1006
R HRDLK NI L + N P I DFG S N SM +S
Sbjct: 144 ERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLS-KNIGIESMAHSCV 202
Query: 1007 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 1066
G +PE+ L + KSD W G + YE+ PF++ A N
Sbjct: 203 -----GTPYYWSPELLLHETKSYD----DKSDMWALGCIIYELCSGKTPFHK-ANNFSQL 252
Query: 1067 VNAL---PQLNTN-VPEVMRRLVAKLLENDPSDRPSA 1099
++ L P L + + L+ LL +RPSA
Sbjct: 253 ISELKRGPDLPIKGKSKELNILIKNLLNLSAKERPSA 289
Score = 39.3 bits (91), Expect = 0.022
Identities = 48/173 (27%), Positives = 69/173 (39%), Gaps = 37/173 (21%)
Query: 1433 NMSLFILMKKYNT-DL-RNYLRERC----AQLSMHERILLFTQLLEGVTHL-------NM 1479
N L+ILM+ + DL RN ++C ++ H + + QLL + + N
Sbjct: 86 NQKLYILMEFCDAGDLSRNI--QKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNG 143
Query: 1480 HRTAHRDLKSDNILLD------------CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 1527
R HRDLK NI L + N P I DFG S N SM +S
Sbjct: 144 ERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLS-KNIGIESMAHSCV 202
Query: 1528 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQS 1580
G +PE+ L + KSD W G + YE+ PF+++
Sbjct: 203 -----GTPYYWSPELLLHETKSYD----DKSDMWALGCIIYELCSGKTPFHKA 246
>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase N. Serine/Threonine Kinases
(STKs), Protein Kinase N (PKN) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKN subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKN has a
C-terminal catalytic domain that is highly homologous to
PKCs. Its unique N-terminal regulatory region contains
antiparallel coiled-coil (ACC) domains. In mammals, there
are three PKN isoforms from different genes (designated
PKN-alpha, beta, and gamma), which show different
enzymatic properties, tissue distribution, and varied
functions. PKN can be activated by the small GTPase Rho,
and by fatty acids such as arachidonic and linoleic
acids. It is involved in many biological processes
including cytokeletal regulation, cell adhesion, vesicle
transport, glucose transport, regulation of meiotic
maturation and embryonic cell cycles, signaling to the
nucleus, and tumorigenesis.
Length = 324
Score = 41.2 bits (97), Expect = 0.004
Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 36/156 (23%)
Query: 952 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG 1011
G+ +L+ ++ +RDLK DN+LLD T + I DFG K G M +
Sbjct: 113 GLQYLHENKIVYRDLKLDNLLLD-----TEGFVKIADFGLC---KEG--MGFGDRTSTFC 162
Query: 1012 GNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYE---- 1066
G +APEV T +Y+++ D W G + YE+ ++PF D E
Sbjct: 163 GTPEFLAPEVLTET-------SYTRAVDWWGLGVLIYEMLVGESPF----PGDDEEEVFD 211
Query: 1067 --VNALPQ----LNTNVPEVMRRLVAKLLENDPSDR 1096
VN + L+ +MRR LL +P R
Sbjct: 212 SIVNDEVRYPRFLSREAISIMRR----LLRRNPERR 243
Score = 39.7 bits (93), Expect = 0.010
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 18/106 (16%)
Query: 1473 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG 1532
G+ +L+ ++ +RDLK DN+LLD T + I DFG K G M +
Sbjct: 113 GLQYLHENKIVYRDLKLDNLLLD-----TEGFVKIADFGLC---KEG--MGFGDRTSTFC 162
Query: 1533 GNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPF 1577
G +APEV T +Y+++ D W G + YE+ ++PF
Sbjct: 163 GTPEFLAPEVLTET-------SYTRAVDWWGLGVLIYEMLVGESPF 201
>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent
protein Kinase 1-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 1 (CDK1)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. This subfamily is composed of CDK1 from higher
eukaryotes, plants, and yeasts, as well as CDK2 and
CDK3. CDK1 is also called Cell division control protein
2 (Cdc2) or p34 protein kinase, and is regulated by
cyclins A, B, and E. The CDK1/cyclin A complex controls
G2 phase entry and progression while the CDK1/cyclin B
complex is critical for G2 to M phase transition. CDK2
is regulated by cyclin E or cyclin A. Upon activation by
cyclin E, it phosphorylates the retinoblastoma (pRb)
protein which activates E2F mediated transcription and
allows cells to move into S phase. The CDK2/cyclin A
complex plays a role in regulating DNA replication.
Studies in knockout mice revealed that CDK1 can
compensate for the loss of the cdk2 gene as it can also
bind cyclin E and drive G1 to S phase transition. CDK3
is regulated by cyclin C and it phosphorylates pRB
specifically during the G0/G1 transition. This
phosphorylation is required for cells to exit G0
efficiently and enter the G1 phase.
Length = 283
Score = 41.1 bits (97), Expect = 0.004
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 925 DLRNYLRERCAQLSMHERIL--LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 982
DL+ Y+ + + ++ QLL+G+ + + HR HRDLK N+L+D E
Sbjct: 83 DLKKYM-DSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLID-REGA--- 137
Query: 983 QLVITDFG 990
L + DFG
Sbjct: 138 -LKLADFG 144
Score = 41.1 bits (97), Expect = 0.004
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 1446 DLRNYLRERCAQLSMHERIL--LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 1503
DL+ Y+ + + ++ QLL+G+ + + HR HRDLK N+L+D E
Sbjct: 83 DLKKYM-DSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLID-REGA--- 137
Query: 1504 QLVITDFG 1511
L + DFG
Sbjct: 138 -LKLADFG 144
>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine
Kinase, Plant B-type Cyclin-Dependent protein Kinase.
Serine/Threonine Kinases (STKs), Plant B-type
Cyclin-Dependent protein Kinase (CdkB) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CdkB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. The plant-specific B-type CDKs are expressed
from the late S to the M phase of the cell cycle. They
are characterized by the cyclin binding motif
PPT[A/T]LRE. They play a role in controlling mitosis and
integrating developmental pathways, such as stomata and
leaf development. CdkB has been shown to associate with
both cyclin B, which controls G2/M transition, and cyclin
D, which acts as a mediator in linking extracellular
signals to the cell cycle.
Length = 295
Score = 40.9 bits (96), Expect = 0.004
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 18/112 (16%)
Query: 914 SLFILMKKYNTDLRNYL--RERCAQLSMHERIL--LFTQLLEGVTHLNMHRTAHRDLKSD 969
SL+++ + ++DL+ ++ R + + + QLL+GV H + H HRDLK
Sbjct: 80 SLYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQ 139
Query: 970 NILLDCSEDNTCPQLVITDFG---------SSYTNKSGLSMQYSSADIELGG 1012
N+L+D + L I D G SYT++ +++ Y + ++ LG
Sbjct: 140 NLLVDKQKG----LLKIADLGLGRAFSIPVKSYTHEI-VTLWYRAPEVLLGS 186
Score = 40.9 bits (96), Expect = 0.004
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 18/112 (16%)
Query: 1435 SLFILMKKYNTDLRNYL--RERCAQLSMHERIL--LFTQLLEGVTHLNMHRTAHRDLKSD 1490
SL+++ + ++DL+ ++ R + + + QLL+GV H + H HRDLK
Sbjct: 80 SLYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQ 139
Query: 1491 NILLDCSEDNTCPQLVITDFG---------SSYTNKSGLSMQYSSADIELGG 1533
N+L+D + L I D G SYT++ +++ Y + ++ LG
Sbjct: 140 NLLVDKQKG----LLKIADLGLGRAFSIPVKSYTHEI-VTLWYRAPEVLLGS 186
>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated
Kinase-like Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Male germ cell-Associated Kinase
(MAK)-like subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAK-like subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of human MAK and
MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p,
Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3)
and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis
thaliana MHK, and similar proteins. These proteins play
important roles during meiosis. MAK is highly expressed
in testicular cells specifically in the meiotic phase,
but is not essential for spermatogenesis and fertility.
It functions as a coactivator of the androgen receptor in
prostate cells. MRK, also called Intestinal Cell Kinase
(ICK), is expressed ubiquitously, with highest expression
in the ovary and uterus. A missense mutation in MRK
causes endocrine-cerebro-osteodysplasia (ECO), suggesting
that this protein plays an important role in the
development of many organs. MAK and MRK may be involved
in regulating cell cycle and cell fate. Ime2p is a
meiosis-specific kinase that is important during meiotic
initiation and during the later stages of meiosis. Mde3
functions downstream of the transcription factor Mei-4
which is essential for meiotic prophase I.
Length = 283
Score = 40.6 bits (96), Expect = 0.004
Identities = 51/238 (21%), Positives = 81/238 (34%), Gaps = 97/238 (40%)
Query: 1359 AILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV----------VMHFAFTDFVPS 1408
AI K M K+ + + L E + S+ L HPN+V ++F F +++
Sbjct: 28 AI-KKMKKKFYSWEECMNLRE---VKSLRKLNEHPNIVKLKEVFRENDELYFVF-EYM-- 80
Query: 1409 IPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDL------RNYLRERCAQLSMHE 1462
+L+ LMK R+ +
Sbjct: 81 ------------------------EGNLYQLMKDRKGKPFSESVIRSIIY---------- 106
Query: 1463 RILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG--------SSY 1514
Q+L+G+ H++ H HRDLK +N+L S + I DFG Y
Sbjct: 107 ------QILQGLAHIHKHGFFHRDLKPENLL--VSGPEV---VKIADFGLAREIRSRPPY 155
Query: 1515 TNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIF 1571
T+ Y S APE+ L + +YS D W G + E++
Sbjct: 156 TD-------YVSTR-------WYRAPEILLRST------SYSSPVDIWALGCIMAELY 193
Score = 37.1 bits (87), Expect = 0.066
Identities = 57/289 (19%), Positives = 88/289 (30%), Gaps = 125/289 (43%)
Query: 868 LPPHPNVV----------VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFI 917
L HPN+V ++F F +++ +L+
Sbjct: 54 LNEHPNIVKLKEVFRENDELYFVF-EYM--------------------------EGNLYQ 86
Query: 918 LMKKYNTDL------RNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNI 971
LMK R+ + Q+L+G+ H++ H HRDLK +N+
Sbjct: 87 LMKDRKGKPFSESVIRSIIY----------------QILQGLAHIHKHGFFHRDLKPENL 130
Query: 972 LLDCSEDNTCPQLVITDFG--------SSYTNKSGLSMQYSSADIELGGNVALMAPEVAL 1023
L S + I DFG YT+ Y S APE+ L
Sbjct: 131 L--VSGPEV---VKIADFGLAREIRSRPPYTD-------YVSTR-------WYRAPEILL 171
Query: 1024 ATPGLFSFVNYSKS-DAWTAGTVAYEIF----------------------GHDNPF---- 1056
+ +YS D W G + E++ G
Sbjct: 172 RST------SYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPE 225
Query: 1057 -YQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA 1099
Y+ A + +L QL N L+ +L DP RP+A
Sbjct: 226 GYKLASKLGFRFPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTA 274
>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase,
Fungal Cyclin-Dependent protein Kinase Pho85.
Serine/Threonine Kinases (STKs), Pho85 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Pho85 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Pho85 is a
multifunctional Cyclin-Dependent protein Kinase (CDK) in
yeast. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. Pho85 is regulated
by 10 different cyclins (Pcls) and plays a role in G1
progression, cell polarity, phosphate and glycogen
metabolism, gene expression, and in signaling changes in
the environment. It is not essential for yeast viability
and is the functional homolog of mammalian CDK5, which
plays a role in central nervous system development.
Length = 284
Score = 40.9 bits (96), Expect = 0.004
Identities = 52/235 (22%), Positives = 87/235 (37%), Gaps = 75/235 (31%)
Query: 913 MSLFILMKKYNTDLRNYLR---ERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSD 969
M +F M K DL+ Y+ R A + + QLL+G+ + +R HRDLK
Sbjct: 74 MLVFEYMDK---DLKKYMDTHGVRGALDPNTVKSFTY-QLLKGIAFCHENRVLHRDLKPQ 129
Query: 970 NILLDCSEDNTCPQLVITDFG---------SSYTNKSGLSMQYSSADIELGGNVALMAPE 1020
N+L+ N +L + DFG ++++N+ +++ Y + D+ LG
Sbjct: 130 NLLI-----NKRGELKLADFGLARAFGIPVNTFSNEV-VTLWYRAPDVLLGSRT------ 177
Query: 1021 VALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDY-------------- 1065
YS S D W+ G + E+ P + N D
Sbjct: 178 -------------YSTSIDIWSVGCIMAEMIT-GRPLFPGTNNEDQLLKIFRIMGTPTES 223
Query: 1066 ---EVNALPQLNTNVPEVMRR---------------LVAKLLENDPSDRPSAELA 1102
++ LP+ P + L+ +LL+ +P R SA A
Sbjct: 224 TWPGISQLPEYKPTFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDA 278
Score = 39.8 bits (93), Expect = 0.009
Identities = 38/151 (25%), Positives = 64/151 (42%), Gaps = 42/151 (27%)
Query: 1434 MSLFILMKKYNTDLRNYLR---ERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSD 1490
M +F M K DL+ Y+ R A + + QLL+G+ + +R HRDLK
Sbjct: 74 MLVFEYMDK---DLKKYMDTHGVRGALDPNTVKSFTY-QLLKGIAFCHENRVLHRDLKPQ 129
Query: 1491 NILLDCSEDNTCPQLVITDFG---------SSYTNKSGLSMQYSSADIELGGNVALMAPE 1541
N+L+ N +L + DFG ++++N+ +++ Y + D+ LG
Sbjct: 130 NLLI-----NKRGELKLADFGLARAFGIPVNTFSNEV-VTLWYRAPDVLLGSRT------ 177
Query: 1542 VALATPGLFSFVNYSKS-DAWTAGTVAYEIF 1571
YS S D W+ G + E+
Sbjct: 178 -------------YSTSIDIWSVGCIMAEMI 195
>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase 2 and 3.
Serine/Threonine Kinases (STKs), Cyclin-dependent protein
kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK2/3 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK2
is regulated by cyclin E or cyclin A. Upon activation by
cyclin E, it phosphorylates the retinoblastoma (pRb)
protein which activates E2F mediated transcription and
allows cells to move into S phase. The CDK2/cyclin A
complex plays a role in regulating DNA replication. CDK2,
together with CDK4, also regulates embryonic cell
proliferation. Despite these important roles, mice
deleted for the cdk2 gene are viable and normal except
for being sterile. This may be due to compensation
provided by CDK1 (also called Cdc2), which can also bind
cyclin E and drive the G1 to S phase transition. CDK3 is
regulated by cyclin C and it phosphorylates pRB
specifically during the G0/G1 transition. This
phosphorylation is required for cells to exit G0
efficiently and enter the G1 phase.
Length = 284
Score = 40.6 bits (95), Expect = 0.004
Identities = 54/224 (24%), Positives = 92/224 (41%), Gaps = 53/224 (23%)
Query: 914 SLFILMKKYNTDLRNYLR-ERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNIL 972
L+++ + + DL+ ++ + + + QLL+G+ + HR HRDLK N+L
Sbjct: 73 KLYLVFEFLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLL 132
Query: 973 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFS 1030
+ NT + + DFG G+ ++ + ++ V L APE+ L
Sbjct: 133 I-----NTEGAIKLADFG--LARAFGVPVRTYTHEV-----VTLWYRAPEILLGCK---- 176
Query: 1031 FVNYSKS-DAWTAGTVAYE------IFGHDNPFYQSAR-----NTDYE-----VNALPQL 1073
YS + D W+ G + E +F D+ Q R T E V +LP
Sbjct: 177 --YYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDY 234
Query: 1074 NTNVP---------------EVMRRLVAKLLENDPSDRPSAELA 1102
+ P E R L++++L DP+ R SA+ A
Sbjct: 235 KPSFPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAA 278
Score = 39.8 bits (93), Expect = 0.010
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 16/108 (14%)
Query: 1435 SLFILMKKYNTDLRNYLR-ERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNIL 1493
L+++ + + DL+ ++ + + + QLL+G+ + HR HRDLK N+L
Sbjct: 73 KLYLVFEFLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLL 132
Query: 1494 LDCSEDNTCPQLVITDFG---------SSYTNKSGLSMQYSSADIELG 1532
+ NT + + DFG +YT++ +++ Y + +I LG
Sbjct: 133 I-----NTEGAIKLADFGLARAFGVPVRTYTHEV-VTLWYRAPEILLG 174
>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase,
Cyclin-Dependent protein Kinase 7. Serine/Threonine
Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The CDK7
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDK7 plays
essential roles in the cell cycle and in transcription.
It associates with cyclin H and MAT1 and acts as a
CDK-Activating Kinase (CAK) by phosphorylating and
activating cell cycle CDKs (CDK1/2/4/6). In the brain, it
activates CDK5. CDK7 is also a component of the general
transcription factor TFIIH, which phosphorylates the
C-terminal domain (CTD) of RNA polymerase II when it is
bound with unphosphorylated DNA, as present in the
pre-initiation complex. Following phosphorylation, the
CTD dissociates from the DNA which allows transcription
initiation.
Length = 298
Score = 40.6 bits (96), Expect = 0.005
Identities = 41/189 (21%), Positives = 68/189 (35%), Gaps = 53/189 (28%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
L G+ +L+ + HRDLK +N+L+ D L + DF GL+ + S +
Sbjct: 110 MTLRGLEYLHSNWILHRDLKPNNLLIA--SDG---VLKLADF--------GLARSFGSPN 156
Query: 1008 IELGGNV-ALM--APEVALATPGLFSFVNYSKS-DAWTAGTVAYE------IFGHDNPFY 1057
++ V APE+ LF +Y D W+ G + E D+
Sbjct: 157 RKMTHQVVTRWYRAPEL------LFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSDID 210
Query: 1058 QSAR----------NTDYEVNALP--------------QLNTNVPEVMRRLVAKLLENDP 1093
Q + V +LP Q+ + L+ +LL +P
Sbjct: 211 QLGKIFEALGTPTEENWPGVTSLPDYVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNP 270
Query: 1094 SDRPSAELA 1102
+ R +A A
Sbjct: 271 NKRITARQA 279
Score = 39.5 bits (93), Expect = 0.013
Identities = 56/252 (22%), Positives = 95/252 (37%), Gaps = 71/252 (28%)
Query: 1322 GKFIAKGTNAVVYEA--TFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNE 1379
GK + +GT AVVY+A G A+K + I + L E
Sbjct: 5 GKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGI--NFTA----------LRE 52
Query: 1380 DMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSL-FI 1438
L+ ++ HPN++ + F G+ N++L F
Sbjct: 53 IKLLQELK----HPNIIGLLDVF--------------------------GHKSNINLVFE 82
Query: 1439 LMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSE 1498
M+ TDL ++++ L+ + L G+ +L+ + HRDLK +N+L+
Sbjct: 83 FME---TDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSNWILHRDLKPNNLLIA--S 137
Query: 1499 DNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNV-ALM--APEVALATPGLFSFVNY 1555
D L + DF GL+ + S + ++ V APE+ LF +Y
Sbjct: 138 DG---VLKLADF--------GLARSFGSPNRKMTHQVVTRWYRAPEL------LFGARHY 180
Query: 1556 SKS-DAWTAGTV 1566
D W+ G +
Sbjct: 181 GVGVDMWSVGCI 192
>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed.
Length = 932
Score = 41.7 bits (98), Expect = 0.005
Identities = 38/157 (24%), Positives = 60/157 (38%), Gaps = 39/157 (24%)
Query: 963 HRDLKSDNILLDC-SEDNTCPQLVITDFGSSYTNK-----------SGLSMQYSSADI-- 1008
HRDLK DNILL E +VI D+G++ K ++ YSS I
Sbjct: 136 HRDLKPDNILLGLFGE------VVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPG 189
Query: 1009 ELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVN 1068
++ G MAPE L P +D + G + Y++ P+ R
Sbjct: 190 KIVGTPDYMAPERLLGVPA------SESTDIYALGVILYQMLTLSFPY----RRKKGRKI 239
Query: 1069 ALPQL---------NTNVPEVMRRLVAKLLENDPSDR 1096
+ + +P + ++ K L DP++R
Sbjct: 240 SYRDVILSPIEVAPYREIPPFLSQIAMKALAVDPAER 276
Score = 40.9 bits (96), Expect = 0.007
Identities = 45/190 (23%), Positives = 69/190 (36%), Gaps = 63/190 (33%)
Query: 1484 HRDLKSDNILLDC-SEDNTCPQLVITDFGSSYTNK-----------SGLSMQYSSADI-- 1529
HRDLK DNILL E +VI D+G++ K ++ YSS I
Sbjct: 136 HRDLKPDNILLGLFGE------VVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPG 189
Query: 1530 ELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYWHR 1589
++ G MAPE L P +D + G + Y++ P+ R R
Sbjct: 190 KIVGTPDYMAPERLLGVPA------SESTDIYALGVILYQMLTLSFPY----RRKKG--R 237
Query: 1590 KWLWQHLVYSHSSTTPSTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVA 1649
K + Y +P VA P+ + +P + ++
Sbjct: 238 K-----ISYRDVILSPIEVA--------PYRE------------------IPPFLSQIAM 266
Query: 1650 KLLENDPSDR 1659
K L DP++R
Sbjct: 267 KALAVDPAER 276
Score = 30.9 bits (70), Expect = 8.0
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 19/94 (20%)
Query: 247 GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALP 306
G MAPE L P +D + G + Y++ P+ R +
Sbjct: 193 GTPDYMAPERLLGVPA------SESTDIYALGVILYQMLTLSFPY----RRKKGRKISYR 242
Query: 307 QL---------NTNVPEVMRRLVAKLLENDPSDR 331
+ +P + ++ K L DP++R
Sbjct: 243 DVILSPIEVAPYREIPPFLSQIAMKALAVDPAER 276
Score = 30.9 bits (70), Expect = 8.0
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 19/94 (20%)
Query: 688 GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALP 747
G MAPE L P +D + G + Y++ P+ R +
Sbjct: 193 GTPDYMAPERLLGVPA------SESTDIYALGVILYQMLTLSFPY----RRKKGRKISYR 242
Query: 748 QL---------NTNVPEVMRRLVAKLLENDPSDR 772
+ +P + ++ K L DP++R
Sbjct: 243 DVILSPIEVAPYREIPPFLSQIAMKALAVDPAER 276
>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B beta.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, beta (or Akt2) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains
an N-terminal pleckstrin homology (PH) domain and a
C-terminal catalytic domain. PKB-beta is the predominant
PKB isoform expressed in insulin-responsive tissues. It
plays a critical role in the regulation of glucose
homeostasis. It is also implicated in muscle cell
differentiation. Mice deficient in PKB-beta display
normal growth weights but exhibit severe insulin
resistance and diabetes, accompanied by lipoatrophy and
B-cell failure.
Length = 323
Score = 40.8 bits (95), Expect = 0.005
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 22/153 (14%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
+++ + +L+ +RD+K +N++LD +D + ITDFG K G+S +
Sbjct: 103 EIVSALEYLHSRDVVYRDIKLENLMLD--KDG---HIKITDFGLC---KEGISDGATMK- 153
Query: 1008 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYE 1066
G +APEV +Y ++ D W G V YE+ PFY +E
Sbjct: 154 -TFCGTPEYLAPEV-------LEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFE 205
Query: 1067 VNALPQL---NTNVPEVMRRLVAKLLENDPSDR 1096
+ + ++ T PE + L+A LL+ DP R
Sbjct: 206 LILMEEIRFPRTLSPEA-KSLLAGLLKKDPKQR 237
Score = 33.4 bits (76), Expect = 1.0
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 18/111 (16%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
+++ + +L+ +RD+K +N++LD +D + ITDFG K G+S +
Sbjct: 103 EIVSALEYLHSRDVVYRDIKLENLMLD--KDG---HIKITDFGLC---KEGISDGATMK- 153
Query: 1529 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFY 1578
G +APEV +Y ++ D W G V YE+ PFY
Sbjct: 154 -TFCGTPEYLAPEV-------LEDNDYGRAVDWWGLGVVMYEMMCGRLPFY 196
Score = 30.7 bits (69), Expect = 7.4
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 17/115 (14%)
Query: 221 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGT 279
ITDFG K G+S + G +APEV +Y ++ D W G
Sbjct: 136 ITDFGLC---KEGISDGATMK--TFCGTPEYLAPEV-------LEDNDYGRAVDWWGLGV 183
Query: 280 VAYEIFGHDNPFYQSARNTDYEVNALPQL---NTNVPEVMRRLVAKLLENDPSDR 331
V YE+ PFY +E+ + ++ T PE + L+A LL+ DP R
Sbjct: 184 VMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEA-KSLLAGLLKKDPKQR 237
Score = 30.7 bits (69), Expect = 7.4
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 17/115 (14%)
Query: 662 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGT 720
ITDFG K G+S + G +APEV +Y ++ D W G
Sbjct: 136 ITDFGLC---KEGISDGATMK--TFCGTPEYLAPEV-------LEDNDYGRAVDWWGLGV 183
Query: 721 VAYEIFGHDNPFYQSARNTDYEVNALPQL---NTNVPEVMRRLVAKLLENDPSDR 772
V YE+ PFY +E+ + ++ T PE + L+A LL+ DP R
Sbjct: 184 VMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEA-KSLLAGLLKKDPKQR 237
>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional.
Length = 294
Score = 40.6 bits (95), Expect = 0.005
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 915 LFILMKKYNTDLRNYLRERCAQLSMHERIL--LFTQLLEGVTHLNMHRTAHRDLKSDNIL 972
L+++ + + DL+ ++ + + + R++ Q+L G+ + + HR HRDLK N+L
Sbjct: 76 LYLVFEYLDLDLKKHM-DSSPDFAKNPRLIKTYLYQILRGIAYCHSHRVLHRDLKPQNLL 134
Query: 973 LDCSEDNTCPQLVITDFG 990
+D + L + DFG
Sbjct: 135 IDRRTN----ALKLADFG 148
Score = 40.6 bits (95), Expect = 0.005
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 1436 LFILMKKYNTDLRNYLRERCAQLSMHERIL--LFTQLLEGVTHLNMHRTAHRDLKSDNIL 1493
L+++ + + DL+ ++ + + + R++ Q+L G+ + + HR HRDLK N+L
Sbjct: 76 LYLVFEYLDLDLKKHM-DSSPDFAKNPRLIKTYLYQILRGIAYCHSHRVLHRDLKPQNLL 134
Query: 1494 LDCSEDNTCPQLVITDFG 1511
+D + L + DFG
Sbjct: 135 IDRRTN----ALKLADFG 148
>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase,
Abelson kinase. Protein Tyrosine Kinase (PTK) family;
Abelson (Abl) kinase; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Abl (or
c-Abl) is a ubiquitously-expressed cytoplasmic (or
nonreceptor) tyr kinase that contains SH3, SH2, and tyr
kinase domains in its N-terminal region, as well as
nuclear localization motifs, a putative DNA-binding
domain, and F- and G-actin binding domains in its
C-terminal tail. It also contains a short autoinhibitory
cap region in its N-terminus. Abl is normally inactive
and requires phosphorylation and myristoylation for
activation. Abl function depends on its subcellular
localization. In the cytoplasm, Abl plays a role in cell
proliferation and survival. In response to DNA damage or
oxidative stress, Abl is transported to the nucleus where
it induces apoptosis. In chronic myelogenous leukemia
(CML) patients, an aberrant translocation results in the
replacement of the first exon of Abl with the BCR
(breakpoint cluster region) gene. The resulting BCR-Abl
fusion protein is constitutively active and associates
into tetramers, resulting in a hyperactive kinase sending
a continuous signal. This leads to uncontrolled
proliferation, morphological transformation and
anti-apoptotic effects. BCR-Abl is the target of
selective inhibitors, such as imatinib (Gleevec), used in
the treatment of CML. Abl2, also known as ARG
(Abelson-related gene), is thought to play a cooperative
role with Abl in the proper development of the nervous
system. The Tel-ARG fusion protein, resulting from
reciprocal translocation between chromosomes 1 and 12, is
associated with acute myeloid leukemia (AML). The TEL
gene is a frequent fusion partner of other tyr kinase
oncogenes, including Tel/Abl, Tel/PDGFRbeta, and
Tel/Jak2, found in patients with leukemia and
myeloproliferative disorders.
Length = 263
Score = 40.6 bits (95), Expect = 0.005
Identities = 46/186 (24%), Positives = 73/186 (39%), Gaps = 30/186 (16%)
Query: 923 NTDLRNYLRERCAQLSMHERILLF--TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNT 980
+L +YLRE C + ++ +LL+ TQ+ + +L HRDL + N L+ E++
Sbjct: 86 YGNLLDYLRE-CNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLV--GENHL 142
Query: 981 CPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAW 1040
+ + DFG S ++ A + APE L KSD W
Sbjct: 143 ---VKVADFGLSRLMTGDTYTAHAGAKFP----IKWTAPE------SLAYNKFSIKSDVW 189
Query: 1041 TAGTVAYEIFGHDNPFYQSARNTD--------YEVNALPQLNTNVPEVMRRLVAKLLEND 1092
G + +EI + Y + Y + V E+MR + +
Sbjct: 190 AFGVLLWEIATYGMSPYPGIDLSQVYELLEKGYRMERPEGCPPKVYELMR----ACWQWN 245
Query: 1093 PSDRPS 1098
PSDRPS
Sbjct: 246 PSDRPS 251
Score = 36.8 bits (85), Expect = 0.086
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 18/129 (13%)
Query: 1444 NTDLRNYLRERCAQLSMHERILLF--TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNT 1501
+L +YLRE C + ++ +LL+ TQ+ + +L HRDL + N L+ E++
Sbjct: 86 YGNLLDYLRE-CNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLV--GENHL 142
Query: 1502 CPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAW 1561
+ + DFG S ++ A + APE L KSD W
Sbjct: 143 ---VKVADFGLSRLMTGDTYTAHAGAKFP----IKWTAPE------SLAYNKFSIKSDVW 189
Query: 1562 TAGTVAYEI 1570
G + +EI
Sbjct: 190 AFGVLLWEI 198
>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine
Kinase, Ephrin Receptor A2. Protein Tyrosine Kinase
(PTK) family; Ephrin Receptor (EphR) subfamily; EphA2
receptor; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. EphRs comprise the
largest subfamily of receptor tyr kinases (RTKs). In
general, class EphA receptors bind GPI-anchored ephrin-A
ligands. There are ten vertebrate EphA receptors
(EphA1-10), which display promiscuous interactions with
six ephrin-A ligands. EphRs contain an ephrin binding
domain and two fibronectin repeats extracellularly, a
transmembrane segment, and a cytoplasmic tyr kinase
domain. Binding of the ephrin ligand to EphR requires
cell-cell contact since both are anchored to the plasma
membrane. The resulting downstream signals occur
bidirectionally in both EphR-expressing cells (forward
signaling) and ephrin-expressing cells (reverse
signaling). Ephrin/EphR interaction mainly results in
cell-cell repulsion or adhesion, making it important in
neural development and plasticity, cell morphogenesis,
cell-fate determination, embryonic development, tissue
patterning, and angiogenesis. The EphA2 receptor is
overexpressed in tumor cells and tumor blood vessels in a
variety of cancers including breast, prostate, lung, and
colon. As a result, it is an attractive target for drug
design since its inhibition could affect several aspects
of tumor progression.
Length = 268
Score = 40.3 bits (94), Expect = 0.005
Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 23/182 (12%)
Query: 923 NTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 982
N L YLR+ + S ++ + + + G+ +L+ HRDL + NIL+ N+
Sbjct: 90 NGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDMNYVHRDLAARNILV-----NSNL 144
Query: 983 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNY-SKSDA 1039
+ ++DFG S + Y+++ GG + + APE ++ + S SD
Sbjct: 145 ECKVSDFGLSRVLEDDPEGTYTTS----GGKIPIRWTAPEA-------IAYRKFTSASDV 193
Query: 1040 WTAGTVAYEIFGH-DNPFYQ-SARNTDYEVNALPQLNT--NVPEVMRRLVAKLLENDPSD 1095
W+ G V +E+ + P++ S +N +L + P + +L+ + + D +
Sbjct: 194 WSFGIVMWEVMSFGERPYWDMSNHEVMKAINDGFRLPAPMDCPSAVYQLMLQCWQQDRAR 253
Query: 1096 RP 1097
RP
Sbjct: 254 RP 255
Score = 39.6 bits (92), Expect = 0.009
Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 20/140 (14%)
Query: 1444 NTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 1503
N L YLR+ + S ++ + + + G+ +L+ HRDL + NIL+ N+
Sbjct: 90 NGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDMNYVHRDLAARNILV-----NSNL 144
Query: 1504 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNY-SKSDA 1560
+ ++DFG S + Y+++ GG + + APE ++ + S SD
Sbjct: 145 ECKVSDFGLSRVLEDDPEGTYTTS----GGKIPIRWTAPEA-------IAYRKFTSASDV 193
Query: 1561 WTAGTVAYEIFGH-DNPFYQ 1579
W+ G V +E+ + P++
Sbjct: 194 WSFGIVMWEVMSFGERPYWD 213
>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the
Serine/Threonine Kinase, p38beta Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs), p38beta
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38beta subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38beta, also called MAPK11, is widely expressed
in tissues and shows more similarity with p38alpha than
with the other isoforms. Both are sensitive to
pyridinylimidazoles and share some common substrates such
as MAPK activated protein kinase 2 (MK2) and the
transcription factors ATF2, c-Fos and, ELK-1. p38beta is
involved in regulating the activation of the
cyclooxygenase-2 promoter and the expression of
TGFbeta-induced alpha-smooth muscle cell actin.
Length = 343
Score = 40.8 bits (95), Expect = 0.005
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 32/132 (24%)
Query: 925 DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNTCP 982
DL N ++ C +LS L QLL G+ +++ HRDLK N+ + DC
Sbjct: 105 DLNNIVK--CQKLSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDC------- 155
Query: 983 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVA---LMAPEVALATPGLFSFVNYSKS-D 1038
+L I DF GL+ Q AD E+ G VA APE+ L ++++Y+++ D
Sbjct: 156 ELRILDF--------GLARQ---ADDEMTGYVATRWYRAPEIML------NWMHYNQTVD 198
Query: 1039 AWTAGTVAYEIF 1050
W+ G + E+
Sbjct: 199 IWSVGCIMAELL 210
Score = 40.8 bits (95), Expect = 0.005
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 32/132 (24%)
Query: 1446 DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNTCP 1503
DL N ++ C +LS L QLL G+ +++ HRDLK N+ + DC
Sbjct: 105 DLNNIVK--CQKLSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDC------- 155
Query: 1504 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVA---LMAPEVALATPGLFSFVNYSKS-D 1559
+L I DF GL+ Q AD E+ G VA APE+ L ++++Y+++ D
Sbjct: 156 ELRILDF--------GLARQ---ADDEMTGYVATRWYRAPEIML------NWMHYNQTVD 198
Query: 1560 AWTAGTVAYEIF 1571
W+ G + E+
Sbjct: 199 IWSVGCIMAELL 210
>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase,
Hematopoietic cell kinase. Protein Tyrosine Kinase (PTK)
family; Hematopoietic cell kinase (Hck); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases such
as protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Hck is a
member of the Src subfamily of proteins, which are
cytoplasmic (or non-receptor) tyr kinases. Src kinases
contain an N-terminal SH4 domain with a myristoylation
site, followed by SH3 and SH2 domains, a tyr kinase
domain, and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated by
phosphorylation at the C-terminal tyr by Csk (C-terminal
Src Kinase). Src proteins are involved in signaling
pathways that regulate cytokine and growth factor
responses, cytoskeleton dynamics, cell proliferation,
survival, and differentiation. Hck is present in myeloid
and lymphoid cells that play a role in the development of
cancer. It may be important in the oncogenic signaling of
the protein Tel-Abl, which induces a chronic myelogenous
leukemia (CML)-like disease. Hck also acts as a negative
regulator of granulocyte colony-stimulating factor
(G-CSF)-induced proliferation of granulocytic precursors,
suggesting a possible role in the development of acute
myeloid leukemia (AML). In addition, Hck is essential in
regulating the degranulation of polymorphonuclear
leukocytes (PMNs). Genetic polymorphisms affect the
expression level of Hck, which affects PMN mediator
release and influences the development of chronic
obstructive pulmonary disease (COPD).
Length = 260
Score = 40.4 bits (94), Expect = 0.005
Identities = 43/176 (24%), Positives = 67/176 (38%), Gaps = 43/176 (24%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLS 1000
Q+ EG+ + HRDL++ NIL+ S C I DFG + YT + G
Sbjct: 110 QIAEGMAFIEQRNYIHRDLRAANILV--SASLVCK---IADFGLARVIEDNEYTAREGAK 164
Query: 1001 MQYSSADIELGGNVALMAPEVALATPGLFSFVNYS----KSDAWTAGTVAYEIFGHDNPF 1056
+ APE +N+ KSD W+ G + EI +
Sbjct: 165 FP-----------IKWTAPEA----------INFGSFTIKSDVWSFGILLMEIVTYGRIP 203
Query: 1057 YQSARNTDYEVNALP-----QLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ 1107
Y N + + AL N PE + ++ + +N P +RP+ E +V
Sbjct: 204 YPGMSNPEV-IRALERGYRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLD 258
Score = 31.1 bits (70), Expect = 4.2
Identities = 32/128 (25%), Positives = 47/128 (36%), Gaps = 37/128 (28%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLS 1521
Q+ EG+ + HRDL++ NIL+ S C I DFG + YT + G
Sbjct: 110 QIAEGMAFIEQRNYIHRDLRAANILV--SASLVCK---IADFGLARVIEDNEYTAREGAK 164
Query: 1522 MQYSSADIELGGNVALMAPEVALATPGLFSFVNYS----KSDAWTAGTVAYEIFGHDNPF 1577
+ APE +N+ KSD W+ G + EI +
Sbjct: 165 FP-----------IKWTAPEA----------INFGSFTIKSDVWSFGILLMEIVTYGRIP 203
Query: 1578 YQSARNTD 1585
Y N +
Sbjct: 204 YPGMSNPE 211
>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase C. Serine/Threonine Kinases
(STKs), Protein Kinase C (PKC) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKC subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, classical PKCs depend on
calcium, DAG (1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. Novel PKCs are
calcium-independent, but require DAG and PS for activity,
while atypical PKCs only require PS. PKCs phosphorylate
and modify the activities of a wide variety of cellular
proteins including receptors, enzymes, cytoskeletal
proteins, transcription factors, and other kinases. They
play a central role in signal transduction pathways that
regulate cell migration and polarity, proliferation,
differentiation, and apoptosis. Also included in this
subfamily are the PKC-like proteins, called PKNs.
Length = 318
Score = 40.4 bits (95), Expect = 0.006
Identities = 35/150 (23%), Positives = 56/150 (37%), Gaps = 24/150 (16%)
Query: 952 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG 1011
G+ L+ +RDLK DN+LLD + I DFG K G +
Sbjct: 108 GLQFLHERGIIYRDLKLDNVLLD--SEGHIK---IADFGMC---KEG--ILGGVTTSTFC 157
Query: 1012 GNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL 1070
G +APE+ P Y + D W G + YE+ +PF + D ++
Sbjct: 158 GTPDYIAPEILSYQP-------YGPAVDWWALGVLLYEMLAGQSPF--EGDDEDELFQSI 208
Query: 1071 PQLNTNVPEVMRR----LVAKLLENDPSDR 1096
+ P + + ++ L +P R
Sbjct: 209 LEDEVRYPRWLSKEAKSILKSFLTKNPEKR 238
Score = 40.4 bits (95), Expect = 0.006
Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 26/129 (20%)
Query: 1473 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG 1532
G+ L+ +RDLK DN+LLD + I DFG K G +
Sbjct: 108 GLQFLHERGIIYRDLKLDNVLLD--SEGHIK---IADFGMC---KEG--ILGGVTTSTFC 157
Query: 1533 GNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPF--------YQSARN 1583
G +APE+ P Y + D W G + YE+ +PF +QS
Sbjct: 158 GTPDYIAPEILSYQP-------YGPAVDWWALGVLLYEMLAGQSPFEGDDEDELFQSILE 210
Query: 1584 TDYWHRKWL 1592
+ + +WL
Sbjct: 211 DEVRYPRWL 219
>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine
Kinase, p21-activated kinase 5. Serine/threonine kinases
(STKs), p21-activated kinase (PAK) 5, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PAK subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PAKs are Rho
family GTPase-regulated kinases that serve as important
mediators in the function of Cdc42 (cell division cycle
42) and Rac. PAKs from higher eukaryotes are classified
into two groups (I and II), according to their
biochemical and structural features. PAK5 belongs to
group II. Group II PAKs contain a PBD (p21-binding
domain) and a C-terminal catalytic domain, but do not
harbor an AID (autoinhibitory domain) or SH3 binding
sites. PAK5 is mainly expressed in the brain. It is not
required for viability, but together with PAK6, it is
required for normal levels of locomotion and activity,
and for learning and memory. PAK5 cooperates with Inca
(induced in neural crest by AP2) in the regulation of
cell adhesion and cytoskeletal organization in the embryo
and in neural crest cells during craniofacial
development. PAK5 may also play a role in controlling the
signaling of Raf-1, an effector of Ras, at the
mitochondria.
Length = 292
Score = 40.0 bits (93), Expect = 0.007
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 21/157 (13%)
Query: 949 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADI 1008
+L +++L+ HRD+KSD+ILL + D ++ ++DFG + + S
Sbjct: 127 VLRALSYLHNQGVIHRDIKSDSILL--TSDG---RIKLSDFGFCAQVSKEVPKRKS---- 177
Query: 1009 ELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFY-----QSARNT 1063
L G MAPEV P ++ D W+ G + E+ + P++ Q+ R
Sbjct: 178 -LVGTPYWMAPEVISRLP------YGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRI 230
Query: 1064 DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 1100
+ + + V V+R + +L +PS R +A+
Sbjct: 231 RDNLPPRVKDSHKVSSVLRGFLDLMLVREPSQRATAQ 267
Score = 33.9 bits (77), Expect = 0.63
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 16/109 (14%)
Query: 1470 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADI 1529
+L +++L+ HRD+KSD+ILL + D ++ ++DFG + + S
Sbjct: 127 VLRALSYLHNQGVIHRDIKSDSILL--TSDG---RIKLSDFGFCAQVSKEVPKRKS---- 177
Query: 1530 ELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFY 1578
L G MAPEV P ++ D W+ G + E+ + P++
Sbjct: 178 -LVGTPYWMAPEVISRLP------YGTEVDIWSLGIMVIEMIDGEPPYF 219
>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein Serine/Threonine
Kinase, Rho-associated coiled-coil containing protein
kinase 1. Serine/Threonine Kinases (STKs), ROCK
subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. ROCK contains an
N-terminal extension, a catalytic kinase domain, and a
C-terminal extension, which contains a coiled-coil region
encompassing a Rho-binding domain (RBD) and a pleckstrin
homology (PH) domain. ROCK is auto-inhibited by the RBD
and PH domain interacting with the catalytic domain, and
is activated via interaction with Rho GTPases. ROCK1 is
preferentially expressed in the liver, lung, spleen,
testes, and kidney. It mediates signaling from Rho to the
actin cytoskeleton. It is implicated in the development
of cardiac fibrosis, cardiomyocyte apoptosis, and
hyperglycemia. Mice deficient with ROCK1 display eyelids
open at birth (EOB) and omphalocele phenotypes due to the
disorganization of actin filaments in the eyelids and the
umbilical ring.
Length = 371
Score = 40.4 bits (94), Expect = 0.007
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 963 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYT-NKSGLSMQYSSADIELGGNVALMAPEV 1021
HRD+K DN+LLD S L + DFG+ NK G+ ++ G ++PEV
Sbjct: 165 HRDVKPDNMLLDKSG-----HLKLADFGTCMKMNKEGMVRCDTAV-----GTPDYISPEV 214
Query: 1022 ALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFY 1057
L + G + + D W+ G YE+ D PFY
Sbjct: 215 -LKSQGGDGYYG-RECDWWSVGVFLYEMLVGDTPFY 248
Score = 40.4 bits (94), Expect = 0.007
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 1484 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYT-NKSGLSMQYSSADIELGGNVALMAPEV 1542
HRD+K DN+LLD S L + DFG+ NK G+ ++ G ++PEV
Sbjct: 165 HRDVKPDNMLLDKSG-----HLKLADFGTCMKMNKEGMVRCDTAV-----GTPDYISPEV 214
Query: 1543 ALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFY 1578
L + G + + D W+ G YE+ D PFY
Sbjct: 215 -LKSQGGDGYYG-RECDWWSVGVFLYEMLVGDTPFY 248
>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase,
Cyclin-Dependent protein Kinase 4. Serine/Threonine
Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The CDK4
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDK4 partners with
all three D-type cyclins (D1, D2, and D3) and is also
regulated by INK4 inhibitors. It is active towards the
retinoblastoma (pRb) protein and plays a role in
regulating the early G1 phase of the cell cycle. It is
expressed ubiquitously and is localized in the nucleus.
CDK4 also shows kinase activity towards Smad3, a signal
transducer of transforming growth factor (TGF)-beta
signaling which modulates transcription and plays a role
in cell proliferation and apoptosis. CDK4 is inhibited by
the p21 inhibitor and is specifically mutated in human
melanoma.
Length = 288
Score = 39.9 bits (93), Expect = 0.007
Identities = 43/148 (29%), Positives = 63/148 (42%), Gaps = 32/148 (21%)
Query: 911 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERIL-LFTQLLEGVTHLNMHRTAHRDLKSD 969
R + ++ + + DLR YL + E I L Q L G+ L+ + HRDLK +
Sbjct: 78 RETKVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPE 137
Query: 970 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVAL--- 1023
NIL+ + Q+ + DF GL+ Y S + L V + APEV L
Sbjct: 138 NILV-----TSGGQVKLADF--------GLARIY-SCQMALTPVVVTLWYRAPEVLLQST 183
Query: 1024 -ATPGLFSFVNYSKSDAWTAGTVAYEIF 1050
ATP D W+ G + E+F
Sbjct: 184 YATP----------VDMWSVGCIFAEMF 201
Score = 39.9 bits (93), Expect = 0.007
Identities = 43/148 (29%), Positives = 63/148 (42%), Gaps = 32/148 (21%)
Query: 1432 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERIL-LFTQLLEGVTHLNMHRTAHRDLKSD 1490
R + ++ + + DLR YL + E I L Q L G+ L+ + HRDLK +
Sbjct: 78 RETKVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPE 137
Query: 1491 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVAL--- 1544
NIL+ + Q+ + DF GL+ Y S + L V + APEV L
Sbjct: 138 NILV-----TSGGQVKLADF--------GLARIY-SCQMALTPVVVTLWYRAPEVLLQST 183
Query: 1545 -ATPGLFSFVNYSKSDAWTAGTVAYEIF 1571
ATP D W+ G + E+F
Sbjct: 184 YATP----------VDMWSVGCIFAEMF 201
>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, DMPK-related cell division
control protein 42 binding kinase alpha.
Serine/Threonine Kinases (STKs), DMPK-like subfamily,
DMPK-related cell division control protein 42 (Cdc42)
binding kinase (MRCK) alpha isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. MRCK is
activated via interaction with the small GTPase Cdc42.
MRCK/Cdc42 signaling mediates myosin-dependent cell
motility. MRCKalpha is expressed ubiquitously in many
tissues. It plays a role in the regulation of peripheral
actin reorganization and neurite outgrowth. It may also
play a role in the transferrin iron uptake pathway.
Length = 332
Score = 40.0 bits (93), Expect = 0.008
Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 24/187 (12%)
Query: 914 SLFILMKKY-NTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNIL 972
+L+++M Y DL L + +L +++ + ++ HRD+K DNIL
Sbjct: 75 NLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQLHYVHRDIKPDNIL 134
Query: 973 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT---PGLF 1029
+D + + + DFGS ++Q S A G ++PE+ A G +
Sbjct: 135 MDMNG-----HIRLADFGSCLKLMEDGTVQSSVA----VGTPDYISPEILQAMEDGKGKY 185
Query: 1030 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY-------EVNALPQLNTNVPEVMR 1082
+ D W+ G YE+ + PFY + Y E P T+V E +
Sbjct: 186 G----PECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPAQVTDVSEDAK 241
Query: 1083 RLVAKLL 1089
L+ +L+
Sbjct: 242 DLIRRLI 248
Score = 37.7 bits (87), Expect = 0.051
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 17/151 (11%)
Query: 1435 SLFILMKKY-NTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNIL 1493
+L+++M Y DL L + +L +++ + ++ HRD+K DNIL
Sbjct: 75 NLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQLHYVHRDIKPDNIL 134
Query: 1494 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT---PGLF 1550
+D + + + DFGS ++Q S A G ++PE+ A G +
Sbjct: 135 MDMNG-----HIRLADFGSCLKLMEDGTVQSSVA----VGTPDYISPEILQAMEDGKGKY 185
Query: 1551 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSA 1581
+ D W+ G YE+ + PFY +
Sbjct: 186 G----PECDWWSLGVCMYEMLYGETPFYAES 212
>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the
Serine/Threonine Kinase, p38delta Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38delta subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38delta subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38delta, also called MAPK13, is found in skeletal
muscle, heart, lung, testis, pancreas, and small
intestine. It regulates microtubule function by
phosphorylating Tau. It activates the c-jun promoter and
plays a role in G2 cell cycle arrest. It also controls
the degration of c-Myb, which is associated with myeloid
leukemia and poor prognosis in colorectal cancer.
p38delta is the main isoform involved in regulating the
differentiation and apoptosis of keratinocytes.
Length = 342
Score = 39.9 bits (93), Expect = 0.009
Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 34/147 (23%)
Query: 910 GRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKS 968
G F L+ Y TDL+ + LS + L Q+L G+ +++ HRDLK
Sbjct: 89 GDEFQDFYLVMPYMQTDLQ---KIMGHPLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKP 145
Query: 969 DNILL--DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA---LMAPEVAL 1023
N+ + DC +L I DFG + AD E+ G V APEV L
Sbjct: 146 GNLAVNEDC-------ELKILDFGLA-----------RHADAEMTGYVVTRWYRAPEVIL 187
Query: 1024 ATPGLFSFVNYSKS-DAWTAGTVAYEI 1049
++++Y+++ D W+ G + E+
Sbjct: 188 ------NWMHYNQTVDIWSVGCIMAEM 208
Score = 39.9 bits (93), Expect = 0.009
Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 34/147 (23%)
Query: 1431 GRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKS 1489
G F L+ Y TDL+ + LS + L Q+L G+ +++ HRDLK
Sbjct: 89 GDEFQDFYLVMPYMQTDLQ---KIMGHPLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKP 145
Query: 1490 DNILL--DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA---LMAPEVAL 1544
N+ + DC +L I DFG + AD E+ G V APEV L
Sbjct: 146 GNLAVNEDC-------ELKILDFGLA-----------RHADAEMTGYVVTRWYRAPEVIL 187
Query: 1545 ATPGLFSFVNYSKS-DAWTAGTVAYEI 1570
++++Y+++ D W+ G + E+
Sbjct: 188 ------NWMHYNQTVDIWSVGCIMAEM 208
>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase,
Insulin Receptor. Protein Tyrosine Kinase (PTK) family;
Insulin Receptor (InsR); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. InsR is a
receptor tyr kinase (RTK) that is composed of two
alphabeta heterodimers. Binding of the insulin ligand to
the extracellular alpha subunit activates the
intracellular tyr kinase domain of the transmembrane beta
subunit. Receptor activation leads to
autophosphorylation, stimulating downstream kinase
activities, which initiate signaling cascades and
biological function. InsR signaling plays an important
role in many cellular processes including glucose
homeostasis, glycogen synthesis, lipid and protein
metabolism, ion and amino acid transport, cell cycle and
proliferation, cell differentiation, gene transcription,
and nitric oxide synthesis. Insulin resistance, caused by
abnormalities in InsR signaling, has been described in
diabetes, hypertension, cardiovascular disease, metabolic
syndrome, heart failure, and female infertility.
Length = 288
Score = 40.0 bits (93), Expect = 0.009
Identities = 50/195 (25%), Positives = 81/195 (41%), Gaps = 43/195 (22%)
Query: 925 DLRNYLRERCAQL---------SMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDC 975
DL++YLR + ++ E I + ++ +G+ +LN + HRDL + N ++
Sbjct: 95 DLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMV-- 152
Query: 976 SEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL 1028
+ D T + I DFG + Y K G + V MAPE G+
Sbjct: 153 AHDFT---VKIGDFGMTRDIYETDYYRKGGKGLL----------PVRWMAPES--LKDGV 197
Query: 1029 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-----YEVNALPQLNTNVPEVMRR 1083
F+ + SD W+ G V +EI YQ N + L Q + N PE +
Sbjct: 198 FT----TSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPD-NCPERVTD 252
Query: 1084 LVAKLLENDPSDRPS 1098
L+ + +P RP+
Sbjct: 253 LMRMCWQFNPKMRPT 267
Score = 38.4 bits (89), Expect = 0.026
Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 37/154 (24%)
Query: 1446 DLRNYLRERCAQL---------SMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDC 1496
DL++YLR + ++ E I + ++ +G+ +LN + HRDL + N ++
Sbjct: 95 DLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMV-- 152
Query: 1497 SEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL 1549
+ D T + I DFG + Y K G + V MAPE G+
Sbjct: 153 AHDFT---VKIGDFGMTRDIYETDYYRKGGKGLL----------PVRWMAPES--LKDGV 197
Query: 1550 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARN 1583
F+ + SD W+ G V +EI YQ N
Sbjct: 198 FT----TSSDMWSFGVVLWEITSLAEQPYQGLSN 227
>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein Serine/Threonine
Kinase, Rho-associated coiled-coil containing protein
kinase. Serine/Threonine Kinases (STKs), Rho-associated
coiled-coil containing protein kinase (ROCK) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. ROCK is also
referred to as Rho-associated kinase or simply as Rho
kinase. It contains an N-terminal extension, a catalytic
kinase domain, and a long C-terminal extension, which
contains a coiled-coil region encompassing a Rho-binding
domain (RBD) and a pleckstrin homology (PH) domain. ROCK
is auto-inhibited by the RBD and PH domain interacting
with the catalytic domain. It is activated via
interaction with Rho GTPases and is involved in many
cellular functions including contraction, adhesion,
migration, motility, proliferation, and apoptosis. The
ROCK subfamily consists of two isoforms, ROCK1 and ROCK2,
which may be functionally redundant in some systems, but
exhibit different tissue distributions. Both isoforms are
ubiquitously expressed in most tissues, but ROCK2 is more
prominent in brain and skeletal muscle while ROCK1 is
more pronounced in the liver, testes, and kidney. Studies
in knockout mice result in different phenotypes,
suggesting that the two isoforms do not compensate for
each other during embryonic development.
Length = 370
Score = 40.1 bits (94), Expect = 0.009
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 963 HRDLKSDNILLDCSEDNTCPQLVITDFGSSY-TNKSGLSMQYSSADIELGGNVALMAPEV 1021
HRD+K DN+LLD S L + DFG+ + +G M + G ++PEV
Sbjct: 165 HRDVKPDNMLLDKSG-----HLKLADFGTCMKMDANG--MVRCDTAV---GTPDYISPEV 214
Query: 1022 ALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYE 1066
L + G + Y + D W+ G YE+ D PFY + Y
Sbjct: 215 -LKSQGGDGY--YGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYS 257
Score = 39.8 bits (93), Expect = 0.012
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 15/97 (15%)
Query: 1484 HRDLKSDNILLDCSEDNTCPQLVITDFGSSY-TNKSGLSMQYSSADIELGGNVALMAPEV 1542
HRD+K DN+LLD S L + DFG+ + +G M + G ++PEV
Sbjct: 165 HRDVKPDNMLLDKSG-----HLKLADFGTCMKMDANG--MVRCDTAV---GTPDYISPEV 214
Query: 1543 ALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFY 1578
L + G + Y + D W+ G YE+ D PFY
Sbjct: 215 -LKSQGGDGY--YGRECDWWSVGVFLYEMLVGDTPFY 248
>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein
Serine/Threonine Kinase, Group II p21-activated kinase.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) subfamily, Group II, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PAK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group II PAKs, also called non-conventional PAKs, include
PAK4, PAK5, and PAK6. Group II PAKs contain PBD
(p21-binding domain) and catalytic domains, but lack
other motifs found in group I PAKs, such as an AID
(autoinhibitory domain) and SH3 binding sites. Since
group II PAKs do not contain an obvious AID, they may be
regulated differently from group I PAKs. While group I
PAKs interact with the SH3 containing proteins Nck, Grb2
and PIX, no such binding has been demonstrated for group
II PAKs. Some known substrates of group II PAKs are also
substrates of group I PAKs such as Raf, BAD, LIMK and
GEFH1. Unique group II substrates include MARK/Par-1 and
PDZ-RhoGEF. Group II PAKs play important roles in
filopodia formation, neuron extension, cytoskeletal
organization, and cell survival.
Length = 285
Score = 39.7 bits (93), Expect = 0.010
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 27/160 (16%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
+L+ ++ L+ HRD+KSD+ILL + D + ++DFG + + S
Sbjct: 123 AVLKALSFLHAQGVIHRDIKSDSILL--TSDGR---VKLSDFGFCAQVSKEVPRRKS--- 174
Query: 1008 IELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAGTVAYEIFGHDNPFY-----QSAR 1061
L G MAPEV P Y ++ D W+ G + E+ + P++ Q+ +
Sbjct: 175 --LVGTPYWMAPEVISRLP-------YGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQAMK 225
Query: 1062 NTDYEVNALPQLNT--NVPEVMRRLVAKLLENDPSDRPSA 1099
N P+L V +R + ++L DP+ R +A
Sbjct: 226 RI--RDNLPPKLKNLHKVSPRLRSFLDRMLVRDPAQRATA 263
Score = 35.1 bits (81), Expect = 0.25
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 18/111 (16%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
+L+ ++ L+ HRD+KSD+ILL + D + ++DFG + + S
Sbjct: 123 AVLKALSFLHAQGVIHRDIKSDSILL--TSDGR---VKLSDFGFCAQVSKEVPRRKS--- 174
Query: 1529 IELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAGTVAYEIFGHDNPFY 1578
L G MAPEV P Y ++ D W+ G + E+ + P++
Sbjct: 175 --LVGTPYWMAPEVISRLP-------YGTEVDIWSLGIMVIEMVDGEPPYF 216
>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase,
Tropomyosin Related Kinase C. Protein Tyrosine Kinase
(PTK) family; Tropomyosin Related Kinase C (TrkC);
catalytic (c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
TrkC is a member of the Trk subfamily of proteins, which
are receptor tyr kinases (RTKs) containing an
extracellular region with arrays of leucine-rich motifs
flanked by two cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment, and
an intracellular catalytic domain. Binding of TrkC to its
ligand, neurotrophin 3 (NT3), results in receptor
oligomerization and activation of the catalytic domain.
TrkC is broadly expressed in the nervous system and in
some non-neural tissues including the developing heart.
NT3/TrkC signaling plays an important role in the
innervation of the cardiac conducting system and the
development of smooth muscle cells. Mice deficient with
NT3 and TrkC have multiple heart defects. NT3/TrkC
signaling is also critical for the development and
maintenance of enteric neurons that are important for the
control of gut peristalsis.
Length = 291
Score = 39.6 bits (92), Expect = 0.012
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 25/134 (18%)
Query: 931 RERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV-ITDF 989
R+ +L + + + + +Q+ G+ +L HRDL + N L+ + LV I DF
Sbjct: 114 RQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGAN------LLVKIGDF 167
Query: 990 GSSYTNKSGLSMQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTV 1045
G S YS+ +GG+ L M PE + F+ ++SD W+ G +
Sbjct: 168 GMSRD-------VYSTDYYRVGGHTMLPIRWMPPESIMYRK--FT----TESDVWSFGVI 214
Query: 1046 AYEIFGH-DNPFYQ 1058
+EIF + P++Q
Sbjct: 215 LWEIFTYGKQPWFQ 228
Score = 39.6 bits (92), Expect = 0.012
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 25/134 (18%)
Query: 1452 RERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV-ITDF 1510
R+ +L + + + + +Q+ G+ +L HRDL + N L+ + LV I DF
Sbjct: 114 RQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGAN------LLVKIGDF 167
Query: 1511 GSSYTNKSGLSMQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTV 1566
G S YS+ +GG+ L M PE + F+ ++SD W+ G +
Sbjct: 168 GMSRD-------VYSTDYYRVGGHTMLPIRWMPPESIMYRK--FT----TESDVWSFGVI 214
Query: 1567 AYEIFGH-DNPFYQ 1579
+EIF + P++Q
Sbjct: 215 LWEIFTYGKQPWFQ 228
>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the
Serine/Threonine Kinase, p38gamma Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38gamma subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38gamma subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38gamma, also called MAPK12, is predominantly
expressed in skeletal muscle. Unlike p38alpha and
p38beta, p38gamma is insensitive to pyridinylimidazoles.
It displays an antagonizing function compared to
p38alpha. p38gamma inhibits, while p38alpha stimulates,
c-Jun phosphorylation and AP-1 mediated transcription.
p38gamma also plays a role in the signaling between Ras
and the estrogen receptor and has been implicated to
increase cell invasion and breast cancer progression. In
Xenopus, p38gamma is critical in the meiotic maturation
of oocytes.
Length = 343
Score = 39.5 bits (92), Expect = 0.013
Identities = 55/226 (24%), Positives = 95/226 (42%), Gaps = 69/226 (30%)
Query: 915 LFILMKKYNTDLRNYLR-ERCAQLSMHERI-LLFTQLLEGVTHLNMHRTAHRDLKSDNIL 972
+++M TDL ++ E+ ++ +RI L Q+L+G+ +++ HRDLK N+
Sbjct: 95 FYLVMPFMGTDLGKLMKHEKLSE----DRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLA 150
Query: 973 L--DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA---LMAPEVALATPG 1027
+ DC +L I DF GL+ Q D E+ G V APEV L
Sbjct: 151 VNEDC-------ELKILDF--------GLARQ---TDSEMTGYVVTRWYRAPEVIL---- 188
Query: 1028 LFSFVNYSKS-DAWTAGTVAYEIF-------GHDN----------------PFYQSARNT 1063
++++Y+++ D W+ G + E+ GHD+ F Q ++
Sbjct: 189 --NWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMKVTGTPSKEFVQKLQSE 246
Query: 1064 DYE--VNALPQLN--------TNVPEVMRRLVAKLLENDPSDRPSA 1099
D + V LP+ N + ++ K+L D R +A
Sbjct: 247 DAKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITA 292
Score = 38.8 bits (90), Expect = 0.021
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 43/155 (27%)
Query: 1436 LFILMKKYNTDLRNYLR-ERCAQLSMHERI-LLFTQLLEGVTHLNMHRTAHRDLKSDNIL 1493
+++M TDL ++ E+ ++ +RI L Q+L+G+ +++ HRDLK N+
Sbjct: 95 FYLVMPFMGTDLGKLMKHEKLSE----DRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLA 150
Query: 1494 L--DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA---LMAPEVALATPG 1548
+ DC +L I DF GL+ Q D E+ G V APEV L
Sbjct: 151 VNEDC-------ELKILDF--------GLARQ---TDSEMTGYVVTRWYRAPEVIL---- 188
Query: 1549 LFSFVNYSKS-DAWTAGTVAYEIF-------GHDN 1575
++++Y+++ D W+ G + E+ GHD+
Sbjct: 189 --NWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDH 221
>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine
Kinase, Fungal Cyclin-Dependent protein Kinase Bypass
UAS Requirement 1 and similar proteins.
Serine/Threonine Kinases (STKs), Bypass UAS Requirement
1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
BUR1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. BUR1, also called
SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK)
that is functionally equivalent to mammalian CDK9. It
associates with the cyclin BUR2. BUR genes were
orginally identified in a genetic screen as factors
involved in general transcription. The BUR1/BUR2 complex
phosphorylates the C-terminal domain of RNA polymerase
II. In addition, this complex regulates histone
modification by phosporylating Rad6 and mediating the
association of the Paf1 complex with chromatin.
Length = 311
Score = 39.2 bits (92), Expect = 0.013
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 990
QLLEG+ +L+ + HRD+K+ NIL+ DN L I DFG
Sbjct: 123 QLLEGINYLHENHILHRDIKAANILI----DNQ-GILKIADFG 160
Score = 39.2 bits (92), Expect = 0.013
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 1511
QLLEG+ +L+ + HRD+K+ NIL+ DN L I DFG
Sbjct: 123 QLLEGINYLHENHILHRDIKAANILI----DNQ-GILKIADFG 160
>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine
Kinases, Fungal Mitogen-Activated Protein Kinases Sty1
and Hog1. Serine/Threonine Kinases (STKs), Fungal
Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Sty1/Hog1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of the MAPKs Sty1
from Schizosaccharomyces pombe, Hog1 from Saccharomyces
cerevisiae, and similar proteins. MAPKs are important
mediators of cellular responses to extracellular signals.
Sty1 and Hog1 are stress-activated MAPKs that partipate
in transcriptional regulation in response to stress. Sty1
is activated in response to oxidative stress, osmotic
stress, and UV radiation. Sty1 is regulated by the MAP2K
Wis1, which is activated by the MAP3Ks Wis4 and Win1,
which receive signals of the stress condition from
membrane-spanning histidine kinases Mak1-3. Activated
Sty1 stabilizes the Atf1 transcription factor and induces
transcription of Atf1-dependent genes of the core
environmetal stress response (CESR). Hog1 is the key
element in the high osmolarity glycerol (HOG) pathway and
is activated upon hyperosmotic stress. Activated Hog1
accumulates in the nucleus and regulates stress-induced
transcription. The HOG pathway is mediated by two
transmembrane osmosensors, Sln1 and Sho1.
Length = 328
Score = 39.4 bits (92), Expect = 0.013
Identities = 53/205 (25%), Positives = 78/205 (38%), Gaps = 62/205 (30%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
Q+L G+ +++ HRDLK NIL++ + D L I DFG + D
Sbjct: 116 QILRGLKYVHSAGVVHRDLKPSNILINENCD-----LKICDFGLARIQ-----------D 159
Query: 1008 IELGGNVA---LMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIF---------GHDN 1054
++ G V+ APE+ L ++ Y + D W+AG + E+ H N
Sbjct: 160 PQMTGYVSTRYYRAPEIML------TWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVN 213
Query: 1055 PFYQ----------------SARNTDYEVNALPQLN--------TNVPEVMRRLVAKLLE 1090
F + NT V +LP+ N L+ K+L
Sbjct: 214 QFSIITDLLGTPPDDVINTICSENTLRFVQSLPKREPVPFSEKFKNADPSAIDLLEKMLV 273
Query: 1091 NDPSDRPSAELAATVCQLYLWAPKH 1115
DP R SA A + YL AP H
Sbjct: 274 FDPQKRISAAEA--LAHPYL-APYH 295
Score = 36.3 bits (84), Expect = 0.12
Identities = 55/222 (24%), Positives = 88/222 (39%), Gaps = 54/222 (24%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
Q+L G+ +++ HRDLK NIL++ + D L I DFG + D
Sbjct: 116 QILRGLKYVHSAGVVHRDLKPSNILINENCD-----LKICDFGLARIQ-----------D 159
Query: 1529 IELGGNVA---LMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNT 1584
++ G V+ APE+ L ++ Y + D W+AG + E+ P +
Sbjct: 160 PQMTGYVSTRYYRAPEIML------TWQKYDVEVDIWSAGCIFAEML-EGKPLFPG---K 209
Query: 1585 DYWHRKWLWQHLVYSHSSTTPSTVAYEIFGHDNPFYQSARNTDYEVNALPQLN------- 1637
D+ ++ + L+ + +T+ E NT V +LP+
Sbjct: 210 DHVNQFSIITDLLGTPPDDVINTICSE-------------NTLRFVQSLPKREPVPFSEK 256
Query: 1638 -TNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKH 1678
N L+ K+L DP R SA A + YL AP H
Sbjct: 257 FKNADPSAIDLLEKMLVFDPQKRISAAEA--LAHPYL-APYH 295
>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine
Kinase, Microtubule-associated serine/threonine kinase.
Serine/Threonine Kinases (STKs), Microtubule-associated
serine/threonine (MAST) kinase subfamily, MAST, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAST kinase subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. MAST
kinases contain an N-terminal domain of unknown function,
a central catalytic domain, and a C-terminal PDZ domain
that mediates protein-protein interactions. There are
four mammalian MAST kinases, named MAST1-MAST4. MAST1 is
also referred to as syntrophin-associated STK (SAST),
while MAST2 is also called MAST205. MAST kinases are
cytoskeletal associated kinases of unknown function that
are also expressed at neuromuscular junctions and
postsynaptic densities. MAST1, MAST2, and MAST3 bind and
phosphorylate the tumor suppressor PTEN, and may
contribute to the regulation and stabilization of PTEN.
MAST2 is involved in the regulation of the Fc-gamma
receptor of the innate immune response in macrophages,
and may also be involved in the regulation of the Na+/H+
exchanger NHE3.
Length = 305
Score = 39.4 bits (92), Expect = 0.014
Identities = 47/187 (25%), Positives = 77/187 (41%), Gaps = 42/187 (22%)
Query: 944 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY 1003
+ F + + + +L+ + HRDLK DN+L+ + + +TDFG S K GL M
Sbjct: 105 MYFAETVLALEYLHNYGIVHRDLKPDNLLI-----TSMGHIKLTDFGLS---KIGL-MSL 155
Query: 1004 SS--------------ADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYE 1048
++ D ++ G +APEV L Y K D W G + YE
Sbjct: 156 TTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQ-------GYGKPVDWWAMGIILYE 208
Query: 1049 IFGHDNPFYQSARNTDYEVNA--------LPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 1100
PF+ +T E+ P+ + +P + L+++LL +P +R
Sbjct: 209 FLVGCVPFFG---DTPEELFGQVISDDIEWPEGDEALPADAQDLISRLLRQNPLERLGTG 265
Query: 1101 LAATVCQ 1107
A V Q
Sbjct: 266 GAFEVKQ 272
Score = 35.9 bits (83), Expect = 0.15
Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 31/129 (24%)
Query: 1465 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY 1524
+ F + + + +L+ + HRDLK DN+L+ + + +TDFG S K GL M
Sbjct: 105 MYFAETVLALEYLHNYGIVHRDLKPDNLLI-----TSMGHIKLTDFGLS---KIGL-MSL 155
Query: 1525 SS--------------ADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYE 1569
++ D ++ G +APEV L Y K D W G + YE
Sbjct: 156 TTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQ-------GYGKPVDWWAMGIILYE 208
Query: 1570 IFGHDNPFY 1578
PF+
Sbjct: 209 FLVGCVPFF 217
>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine
Kinase, p21-activated kinase 1. Serine/threonine kinases
(STKs), p21-activated kinase (PAK) 1, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PAK subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PAKs are Rho
family GTPase-regulated kinases that serve as important
mediators in the function of Cdc42 (cell division cycle
42) and Rac. PAKs from higher eukaryotes are classified
into two groups (I and II), according to their
biochemical and structural features. PAK1 belongs to
group I. Group I PAKs contain a PBD (p21-binding domain)
overlapping with an AID (autoinhibitory domain), a
C-terminal catalytic domain, SH3 binding sites and a
non-classical SH3 binding site for PIX (PAK-interacting
exchange factor). PAK1 is important in the regulation of
many cellular processes including cytoskeletal dynamics,
cell motility, growth, and proliferation. Although PAK1
has been regarded mainly as a cytosolic protein, recent
reports indicate that PAK1 also exists in significant
amounts in the nucleus, where it is involved in
transcription modulation and in cell cycle regulatory
events. PAK1 is also involved in transformation and
tumorigenesis. Its overexpression, hyperactivation and
increased nuclear accumulation is correlated to breast
cancer invasiveness and progression. Nuclear accumulation
is also linked to tamoxifen resistance in breast cancer
cells.
Length = 296
Score = 38.9 bits (90), Expect = 0.015
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 21/158 (13%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
+ L+ + L+ ++ HRD+KSDNILL + +TDFG + ++ + S
Sbjct: 124 ECLQALEFLHSNQVIHRDIKSDNILLGMDG-----SVKLTDFGFC----AQITPEQSKRS 174
Query: 1008 IELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFY-QSARNTDYE 1066
+ G MAPEV T + K D W+ G +A E+ + P+ ++ Y
Sbjct: 175 -TMVGTPYWMAPEV--VTRKAYG----PKVDIWSLGIMAIEMIEGEPPYLNENPLRALYL 227
Query: 1067 V--NALPQLNT--NVPEVMRRLVAKLLENDPSDRPSAE 1100
+ N P+L + + R + + L+ D R SA+
Sbjct: 228 IATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAK 265
Score = 36.2 bits (83), Expect = 0.11
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 16/109 (14%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
+ L+ + L+ ++ HRD+KSDNILL + +TDFG + ++ + S
Sbjct: 124 ECLQALEFLHSNQVIHRDIKSDNILLGMDG-----SVKLTDFGFC----AQITPEQSKRS 174
Query: 1529 IELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF 1577
+ G MAPEV T + K D W+ G +A E+ + P+
Sbjct: 175 -TMVGTPYWMAPEV--VTRKAYG----PKVDIWSLGIMAIEMIEGEPPY 216
>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase,
Tropomyosin Related Kinase B. Protein Tyrosine Kinase
(PTK) family; Tropomyosin Related Kinase B (TrkB);
catalytic (c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
TrkB is a member of the Trk subfamily of proteins, which
are receptor tyr kinases (RTKs) containing an
extracellular region with arrays of leucine-rich motifs
flanked by two cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment, and
an intracellular catalytic domain. Binding of TrkB to its
ligands, brain-derived neurotrophic factor (BDNF) or
neurotrophin 4 (NT4), results in receptor oligomerization
and activation of the catalytic domain. TrkB is broadly
expressed in the nervous system and in some non-neural
tissues. It plays important roles in cell proliferation,
differentiation, and survival. BDNF/Trk signaling plays a
key role in regulating activity-dependent synaptic
plasticity. TrkB also contributes to protection against
gp120-induced neuronal cell death. TrkB overexpression is
associated with poor prognosis in neuroblastoma (NB) and
other human cancers. It acts as a suppressor of anoikis
(detachment-induced apoptosis) and contributes to tumor
metastasis.
Length = 288
Score = 38.9 bits (90), Expect = 0.016
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 23/132 (17%)
Query: 936 QLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN 995
+L+ + + + Q+ G+ +L HRDL + N L+ +N + I DFG S
Sbjct: 116 ELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVG---ENLLVK--IGDFGMSRD- 169
Query: 996 KSGLSMQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG 1051
YS+ +GG+ L M PE + F+ ++SD W+ G V +EIF
Sbjct: 170 ------VYSTDYYRVGGHTMLPIRWMPPESIMYRK--FT----TESDVWSLGVVLWEIFT 217
Query: 1052 H-DNPFYQSARN 1062
+ P+YQ + N
Sbjct: 218 YGKQPWYQLSNN 229
Score = 38.9 bits (90), Expect = 0.016
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 23/132 (17%)
Query: 1457 QLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN 1516
+L+ + + + Q+ G+ +L HRDL + N L+ +N + I DFG S
Sbjct: 116 ELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVG---ENLLVK--IGDFGMSRD- 169
Query: 1517 KSGLSMQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG 1572
YS+ +GG+ L M PE + F+ ++SD W+ G V +EIF
Sbjct: 170 ------VYSTDYYRVGGHTMLPIRWMPPESIMYRK--FT----TESDVWSLGVVLWEIFT 217
Query: 1573 H-DNPFYQSARN 1583
+ P+YQ + N
Sbjct: 218 YGKQPWYQLSNN 229
>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase;
Provisional.
Length = 353
Score = 39.0 bits (91), Expect = 0.019
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 21/169 (12%)
Query: 940 HERIL--LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKS 997
E+ L + Q+L G+ +L+ HRD+K N+L++ ++ + I DFG S
Sbjct: 166 DEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAK-----NVKIADFGVSRILAQ 220
Query: 998 GLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFY 1057
+ SS G +A M+PE ++ Y+ D W+ G E + PF
Sbjct: 221 TMDPCNSSV-----GTIAYMSPERINTDLNHGAYDGYA-GDIWSLGVSILEFYLGRFPFG 274
Query: 1058 QSARNTDYE-------VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA 1099
R D+ ++ P+ R ++ L+ +P+ R SA
Sbjct: 275 VG-RQGDWASLMCAICMSQPPEAPATASREFRHFISCCLQREPAKRWSA 322
Score = 36.3 bits (84), Expect = 0.14
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 1461 HERIL--LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKS 1518
E+ L + Q+L G+ +L+ HRD+K N+L++ ++ + I DFG S
Sbjct: 166 DEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAK-----NVKIADFGVSRILAQ 220
Query: 1519 GLSMQYSSADIELGGNVALMAPE 1541
+ SS G +A M+PE
Sbjct: 221 TMDPCNSSV-----GTIAYMSPE 238
>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B gamma.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, gamma (or Akt3) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains
an N-terminal pleckstrin homology (PH) domain and a
C-terminal catalytic domain. PKB-gamma is predominantly
expressed in neuronal tissues. Mice deficient in
PKB-gamma show a reduction in brain weight due to the
decreases in cell size and cell number. PKB-gamma has
also been shown to be upregulated in estrogen-deficient
breast cancer cells, androgen-independent prostate cancer
cells, and primary ovarian tumors. It acts as a key
mediator in the genesis of ovarian cancer.
Length = 328
Score = 38.9 bits (90), Expect = 0.022
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 22/153 (14%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
+++ + +L+ + +RDLK +N++LD +D + ITDFG K G++ +A
Sbjct: 103 EIVSALDYLHSGKIVYRDLKLENLMLD--KDG---HIKITDFGLC---KEGIT---DAAT 151
Query: 1008 IE-LGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDY 1065
++ G +APEV +Y ++ D W G V YE+ PFY +
Sbjct: 152 MKTFCGTPEYLAPEV-------LEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLF 204
Query: 1066 EVNALPQLN--TNVPEVMRRLVAKLLENDPSDR 1096
E+ + + + + L++ LL DP+ R
Sbjct: 205 ELILMEDIKFPRTLSADAKSLLSGLLIKDPNKR 237
Score = 34.3 bits (78), Expect = 0.48
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 20/112 (17%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
+++ + +L+ + +RDLK +N++LD +D + ITDFG K G++ +A
Sbjct: 103 EIVSALDYLHSGKIVYRDLKLENLMLD--KDG---HIKITDFGLC---KEGIT---DAAT 151
Query: 1529 IE-LGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFY 1578
++ G +APEV +Y ++ D W G V YE+ PFY
Sbjct: 152 MKTFCGTPEYLAPEV-------LEDNDYGRAVDWWGLGVVMYEMMCGRLPFY 196
>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to
tyrosine kinase). Protein Tyrosine Kinase (PTK) family;
Receptor related to tyrosine kinase (Ryk); pseudokinase
domain. The PTKc (catalytic domain) family to which this
subfamily belongs, is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ryk is a
receptor tyr kinase (RTK) containing an extracellular
region with two leucine-rich motifs, a transmembrane
segment, and an intracellular inactive pseudokinase
domain. The extracellular region of Ryk shows homology to
the N-terminal domain of Wnt inhibitory factor-1 (WIF)
and serves as the ligand (Wnt) binding domain of Ryk. Ryk
is expressed in many different tissues both during
development and in adults, suggesting a widespread
function. It acts as a chemorepulsive axon guidance
receptor of Wnt glycoproteins and is responsible for the
establishment of axon tracts during the development of
the central nervous system. In addition, studies in mice
reveal that Ryk is essential in skeletal, craniofacial,
and cardiac development. Thus, it appears Ryk is involved
in signal transduction despite its lack of kinase
activity. Ryk may function as an accessory protein that
modulates the signals coming from catalytically active
partner RTKs such as the Eph receptors.
Length = 280
Score = 38.5 bits (90), Expect = 0.024
Identities = 51/245 (20%), Positives = 91/245 (37%), Gaps = 51/245 (20%)
Query: 1332 VVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP 1391
++ E TF + Y + + + +K + ++ L L E L+ +
Sbjct: 13 LLQEGTFGRIFYGI--LIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGL----S 66
Query: 1392 HPNVV-VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNY 1450
H N++ ++H D P P L P +G +K + R
Sbjct: 67 HQNILPILHVCIEDGEP-------------PFVLYPYMNWGN-------LKLFLQQCRLG 106
Query: 1451 LRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDF 1510
LS + + + Q+ G+++L+ H+D+ + N ++D Q+ ITD
Sbjct: 107 EANNPQALSTQQLVHMAIQIACGMSYLHKRGVIHKDIAARNCVIDEEL-----QVKITD- 160
Query: 1511 GSSYTNKSGLSMQYSSADIE-LGGN----VALMAPEVALATPGLFSFVNYSKSDAWTAGT 1565
+ LS D LG N V MA E +L +S S SD W+ G
Sbjct: 161 -------NALSRDLFPMDYHCLGDNENRPVKWMALE-SLVNK-EYS----SASDVWSFGV 207
Query: 1566 VAYEI 1570
+ +E+
Sbjct: 208 LLWEL 212
Score = 37.0 bits (86), Expect = 0.072
Identities = 42/176 (23%), Positives = 70/176 (39%), Gaps = 37/176 (21%)
Query: 890 DSSLIY----PSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLR------ERCAQ-LS 938
+S L+Y + LP L+ M N L+ +L+ Q LS
Sbjct: 58 ESCLLYGLSHQNILPILHVCIEDGEPPFVLYPYMNWGN--LKLFLQQCRLGEANNPQALS 115
Query: 939 MHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSG 998
+ + + Q+ G+++L+ H+D+ + N ++D Q+ ITD +
Sbjct: 116 TQQLVHMAIQIACGMSYLHKRGVIHKDIAARNCVIDEEL-----QVKITD--------NA 162
Query: 999 LSMQYSSADIE-LGGN----VALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 1049
LS D LG N V MA E +L +S S SD W+ G + +E+
Sbjct: 163 LSRDLFPMDYHCLGDNENRPVKWMALE-SLVNK-EYS----SASDVWSFGVLLWEL 212
>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase,
Receptor tyrosine kinase-like Orphan Receptor 1. Protein
Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor 1 (Ror1); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases such
as protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ror
proteins are orphan receptor tyr kinases (RTKs)
containing an extracellular region with
immunoglobulin-like, cysteine-rich, and kringle domains,
a transmembrane segment, and an intracellular catalytic
domain. Ror RTKs are unrelated to the nuclear receptor
subfamily called retinoid-related orphan receptors
(RORs). RTKs are usually activated through ligand
binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain. Ror kinases are expressed in many
tissues during development. Avian Ror1 was found to be
involved in late limb development. Studies in mice reveal
that Ror1 is important in the regulation of neurite
growth in central neurons, as well as in respiratory
development. Loss of Ror1 also enhances the heart and
skeletal abnormalities found in Ror2-deficient mice.
Length = 283
Score = 38.1 bits (88), Expect = 0.032
Identities = 46/159 (28%), Positives = 68/159 (42%), Gaps = 28/159 (17%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
Q+ G+ +L+ H H+DL + NIL+ + I+D GLS + SAD
Sbjct: 132 QIAAGMEYLSSHFFVHKDLAARNILI-----GEQLHVKISDL--------GLSREIYSAD 178
Query: 1008 -IELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHD-NPFYQSAR 1061
+ L M PE + G FS S SD W+ G V +EIF P+Y +
Sbjct: 179 YYRVQPKSLLPIRWMPPEAIMY--GKFS----SDSDIWSFGVVLWEIFSFGLQPYYGFSN 232
Query: 1062 NTDYEVNALPQL---NTNVPEVMRRLVAKLLENDPSDRP 1097
E+ QL + + P M L+ + + PS RP
Sbjct: 233 QEVIEMVRKRQLLPCSEDCPPRMYSLMTECWQEGPSRRP 271
Score = 33.4 bits (76), Expect = 0.96
Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 25/116 (21%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
Q+ G+ +L+ H H+DL + NIL+ + I+D GLS + SAD
Sbjct: 132 QIAAGMEYLSSHFFVHKDLAARNILI-----GEQLHVKISDL--------GLSREIYSAD 178
Query: 1529 -IELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHD-NPFY 1578
+ L M PE + G FS S SD W+ G V +EIF P+Y
Sbjct: 179 YYRVQPKSLLPIRWMPPEAIMY--GKFS----SDSDIWSFGVVLWEIFSFGLQPYY 228
>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine
Kinase, p21-activated kinase 4. Serine/threonine kinases
(STKs), p21-activated kinase (PAK) 4, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PAK subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PAKs are Rho
family GTPase-regulated kinases that serve as important
mediators in the function of Cdc42 (cell division cycle
42) and Rac. PAKs from higher eukaryotes are classified
into two groups (I and II), according to their
biochemical and structural features. PAK4 belongs to
group II. Group II PAKs contain a PBD (p21-binding
domain) and a C-terminal catalytic domain, but do not
harbor an AID (autoinhibitory domain) or SH3 binding
sites. PAK4 regulates cell morphology and cytoskeletal
organization. It is essential for embryonic viability and
proper neural development. Mice lacking PAK4 die due to
defects in the fetal heart. In addition, their spinal
cord motor neurons showed failure to differentiate and
migrate. PAK4 also plays a role in cell survival and
tumorigenesis. It is overexpressed in many primary tumors
including colon, esophageal, and mammary tumors. PAK4 has
also been implicated in viral and bacterial infection
pathways.
Length = 292
Score = 38.1 bits (88), Expect = 0.033
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 33/163 (20%)
Query: 949 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADI 1008
+L+ ++ L+ HRD+KSD+ILL + D ++ ++DFG + + S
Sbjct: 125 VLKALSVLHAQGVIHRDIKSDSILL--THDG---RVKLSDFGFCAQVSKEVPRRKS---- 175
Query: 1009 ELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV 1067
L G MAPE L S + Y + D W+ G + E+ + P++ +
Sbjct: 176 -LVGTPYWMAPE-------LISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP-----PL 222
Query: 1068 NALPQLNTNVPEVMRRL----------VAKLLENDPSDRPSAE 1100
A+ + N+P ++ L + +LL DP+ R +A
Sbjct: 223 KAMKMIRDNLPPKLKNLHKVSPSLKGFLDRLLVRDPAQRATAA 265
Score = 31.1 bits (70), Expect = 5.6
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 18/110 (16%)
Query: 1470 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADI 1529
+L+ ++ L+ HRD+KSD+ILL + D ++ ++DFG + + S
Sbjct: 125 VLKALSVLHAQGVIHRDIKSDSILL--THDG---RVKLSDFGFCAQVSKEVPRRKS---- 175
Query: 1530 ELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFY 1578
L G MAPE L S + Y + D W+ G + E+ + P++
Sbjct: 176 -LVGTPYWMAPE-------LISRLPYGPEVDIWSLGIMVIEMVDGEPPYF 217
>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine
Kinase, p21-activated kinase 3. Serine/threonine kinases
(STKs), p21-activated kinase (PAK) 3, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PAK subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PAKs are Rho
family GTPase-regulated kinases that serve as important
mediators in the function of Cdc42 (cell division cycle
42) and Rac. PAKs from higher eukaryotes are classified
into two groups (I and II), according to their
biochemical and structural features. PAK3 belongs to
group I. Group I PAKs contain a PBD (p21-binding domain)
overlapping with an AID (autoinhibitory domain), a
C-terminal catalytic domain, SH3 binding sites and a
non-classical SH3 binding site for PIX (PAK-interacting
exchange factor). PAK3 is highly expressed in the brain.
It is implicated in neuronal plasticity, synapse
formation, dendritic spine morphogenesis, cell cycle
progression, neuronal migration, and apoptosis.
Inactivating mutations in the PAK3 gene cause X-linked
non-syndromic mental retardation, the severity of which
depends on the site of the mutation.
Length = 297
Score = 38.2 bits (88), Expect = 0.034
Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 21/158 (13%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
+ L+ + L+ ++ HRD+KSDNILL + +TDFG S + +
Sbjct: 123 ECLQALDFLHSNQVIHRDIKSDNILLGMDG-----SVKLTDFGFCAQITPEQSKRST--- 174
Query: 1008 IELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFY-QSARNTDYE 1066
+ G MAPEV T + K D W+ G +A E+ + P+ ++ Y
Sbjct: 175 --MVGTPYWMAPEV--VTRKAYG----PKVDIWSLGIMAIEMVEGEPPYLNENPLRALYL 226
Query: 1067 V--NALPQLNT--NVPEVMRRLVAKLLENDPSDRPSAE 1100
+ N P+L + V R + + LE D R SA+
Sbjct: 227 IATNGTPELQNPERLSAVFRDFLNRCLEMDVDRRGSAK 264
Score = 33.9 bits (77), Expect = 0.68
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 16/109 (14%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
+ L+ + L+ ++ HRD+KSDNILL + +TDFG S + +
Sbjct: 123 ECLQALDFLHSNQVIHRDIKSDNILLGMDG-----SVKLTDFGFCAQITPEQSKRST--- 174
Query: 1529 IELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF 1577
+ G MAPEV T + K D W+ G +A E+ + P+
Sbjct: 175 --MVGTPYWMAPEV--VTRKAYG----PKVDIWSLGIMAIEMVEGEPPY 215
>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine
Kinase, Classical Protein Kinase C. Serine/Threonine
Kinases (STKs), Classical (or Conventional) Protein
Kinase C (cPKC) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The cPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of their
regulatory domain. PKCs undergo three phosphorylations in
order to take mature forms. In addition, cPKCs depend on
calcium, DAG (1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. cPKCs contain a
calcium-binding C2 region in their regulatory domain.
There are four cPKC isoforms, named alpha, betaI, betaII,
and gamma. cPKCs are potent kinases for histones, myelin
basic protein, and protamine. PKC-gamma is mainly
expressed in neuronal tissues. It plays a role in
protection from ischemia.
Length = 324
Score = 37.8 bits (88), Expect = 0.036
Identities = 37/147 (25%), Positives = 57/147 (38%), Gaps = 28/147 (19%)
Query: 963 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA 1022
+RDLK DN++LD + I DFG N + G +APE+
Sbjct: 124 YRDLKLDNVMLDAEG-----HIKIADFGMCKEN-----IFGGKTTRTFCGTPDYIAPEII 173
Query: 1023 LATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVM 1081
P Y KS D W G + YE+ PF + D ++ + N + P+ +
Sbjct: 174 AYQP-------YGKSVDWWAFGVLLYEMLAGQPPF--DGEDEDELFQSIMEHNVSYPKSL 224
Query: 1082 RR----LVAKLLENDPSDR----PSAE 1100
+ + LL P+ R P+ E
Sbjct: 225 SKEAVSICKGLLTKHPAKRLGCGPTGE 251
Score = 36.3 bits (84), Expect = 0.12
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 18/95 (18%)
Query: 1484 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA 1543
+RDLK DN++LD + I DFG N + G +APE+
Sbjct: 124 YRDLKLDNVMLDAEG-----HIKIADFGMCKEN-----IFGGKTTRTFCGTPDYIAPEII 173
Query: 1544 LATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPF 1577
P Y KS D W G + YE+ PF
Sbjct: 174 AYQP-------YGKSVDWWAFGVLLYEMLAGQPPF 201
>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase (MAPKK) subfamily, fungal
PBS2-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling pathways
are important mediators of cellular responses to
extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Polymyxin B
resistance protein 2 (PBS2) from Saccharomyces
cerevisiae, Wis1 from Schizosaccharomyces pombe, and
related proteins. PBS2 and Wis1 are components of
stress-activated MAPK cascades in budding and fission
yeast, respectively. PBS2 is the specific activator of
the MAPK Hog1, which plays a central role in the response
of budding yeast to stress including exposure to arsenite
and hyperosmotic environments. Wis1 phosphorylates and
activates the MAPK Sty1 (also called Spc1 or Phh1), which
stimulates a transcriptional response to a wide range of
cellular insults through the bZip transcription factors
Atf1, Pcr1, and Pap1.
Length = 286
Score = 37.9 bits (88), Expect = 0.038
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 21/152 (13%)
Query: 959 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMA 1018
H HRD+K N+L+ N Q+ + DFG S L + +I G + MA
Sbjct: 122 HNIIHRDVKPTNVLV-----NGNGQVKLCDFGVS----GNLVASLAKTNI---GCQSYMA 169
Query: 1019 PEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPF-YQSARNTDYEVNAL-----P 1071
PE + + G Y+ +SD W+ G E+ P+ ++ N +++A+ P
Sbjct: 170 PE-RIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYANIFAQLSAIVDGDPP 228
Query: 1072 QLNTNVPEVMRRLVAKLLENDPSDRPS-AELA 1102
L + + + VAK L P+ RP+ A+L
Sbjct: 229 TLPSGYSDDAQDFVAKCLNKIPNRRPTYAQLL 260
Score = 31.4 bits (71), Expect = 4.3
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
Query: 1480 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMA 1539
H HRD+K N+L+ N Q+ + DFG S L + +I G + MA
Sbjct: 122 HNIIHRDVKPTNVLV-----NGNGQVKLCDFGVS----GNLVASLAKTNI---GCQSYMA 169
Query: 1540 PEVALATPGLFSFVNYS-KSDAWTAG 1564
PE + + G Y+ +SD W+ G
Sbjct: 170 PE-RIKSGGPNQNPTYTVQSDVWSLG 194
>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular
signal-Regulated Kinase 1 and 2-like Serine/Threonine
Kinases. Serine/Threonine Kinases (STKs), Extracellular
signal-regulated kinases 1 and 2 (ERK1/2) and Fus3
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. This
ERK1/2-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
the mitogen-activated protein kinases (MAPKs) ERK1, ERK2,
baker's yeast Fus3, and similar proteins. MAPK pathways
are important mediators of cellular responses to
extracellular signals. ERK1/2 activation is
preferentially by mitogenic factors, differentiation
stimuli, and cytokines, through a kinase cascade
involving the MAPK kinases MEK1/2 and a MAPK kinase
kinase from the Raf family. ERK1/2 have numerous
substrates, many of which are nuclear and participate in
transcriptional regulation of many cellular processes.
They regulate cell growth, cell proliferation, and cell
cycle progression from G1 to S phase. Although the
distinct roles of ERK1 and ERK2 have not been fully
determined, it is known that ERK2 can maintain most
functions in the absence of ERK1, and that the deletion
of ERK2 is embryonically lethal. The MAPK, Fus3,
regulates yeast mating processes including
mating-specific gene expression, G1 arrest, mating
projection, and cell fusion.
Length = 336
Score = 38.0 bits (89), Expect = 0.039
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 34/137 (24%)
Query: 924 TDLRNYLRERCAQLSMHERILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 982
TDL ++ + LS ++ I F Q+L G+ +++ HRDLK N+LL NT
Sbjct: 92 TDLYKLIKTQ--HLS-NDHIQYFLYQILRGLKYIHSANVLHRDLKPSNLLL-----NTNC 143
Query: 983 QLVITDFG-----SSYTNKSGLSMQYSSADIELGGNVA---LMAPEVALATPGLFSFVNY 1034
L I DFG + +G +Y VA APE+ L + Y
Sbjct: 144 DLKICDFGLARIADPEHDHTGFLTEY----------VATRWYRAPEIML------NSKGY 187
Query: 1035 SKS-DAWTAGTVAYEIF 1050
+K+ D W+ G + E+
Sbjct: 188 TKAIDIWSVGCILAEML 204
Score = 38.0 bits (89), Expect = 0.039
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 34/137 (24%)
Query: 1445 TDLRNYLRERCAQLSMHERILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 1503
TDL ++ + LS ++ I F Q+L G+ +++ HRDLK N+LL NT
Sbjct: 92 TDLYKLIKTQ--HLS-NDHIQYFLYQILRGLKYIHSANVLHRDLKPSNLLL-----NTNC 143
Query: 1504 QLVITDFG-----SSYTNKSGLSMQYSSADIELGGNVA---LMAPEVALATPGLFSFVNY 1555
L I DFG + +G +Y VA APE+ L + Y
Sbjct: 144 DLKICDFGLARIADPEHDHTGFLTEY----------VATRWYRAPEIML------NSKGY 187
Query: 1556 SKS-DAWTAGTVAYEIF 1571
+K+ D W+ G + E+
Sbjct: 188 TKAIDIWSVGCILAEML 204
>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein
Serine/Threonine Kinase, cGMP-dependent protein kinase.
Serine/Threonine Kinases (STKs), cGMP-dependent protein
kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The cGK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Mammals have two cGK isoforms from different
genes, cGKI and cGKII. cGKI exists as two splice
variants, cGKI-alpha and cGKI-beta. cGK consists of an
N-terminal regulatory domain containing a dimerization
and an autoinhibitory pseudosubstrate region, two
cGMP-binding domains, and a C-terminal catalytic domain.
Binding of cGMP to both binding sites releases the
inhibition of the catalytic center by the pseudosubstrate
region, allowing autophosphorylation and activation of
the kinase. cGKI is a soluble protein expressed in all
smooth muscles, platelets, cerebellum, and kidney. It is
also expressed at lower concentrations in other tissues.
cGKII is a membrane-bound protein that is most abundantly
expressed in the intestine. It is also present in the
brain nuclei, adrenal cortex, kidney, lung, and prostate.
cGKI is involved in the regulation of smooth muscle tone,
smooth cell proliferation, and platelet activation. cGKII
plays a role in the regulation of secretion, such as
renin secretion by the kidney and aldosterone secretion
by the adrenal. It also regulates bone growth and the
circadian rhythm.
Length = 262
Score = 37.2 bits (87), Expect = 0.048
Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 28/180 (15%)
Query: 925 DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 984
+L LR+R + ++ +L+ +RDLK +N+LLD N +L
Sbjct: 79 ELWTILRDR-GLFDEYTARFYIACVVLAFEYLHNRGIIYRDLKPENLLLD---SNGYVKL 134
Query: 985 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAG 1043
V DFG + KSG ++ G +APE+ L Y S D W+ G
Sbjct: 135 V--DFGFAKKLKSG-QKTWT-----FCGTPEYVAPEIILN-------KGYDFSVDYWSLG 179
Query: 1044 TVAYEIFGHDNPFYQSARNTDYEV-NALPQLN------TNVPEVMRRLVAKLLENDPSDR 1096
+ YE+ PF + + E+ N + + N + + + L+ +LL +P +R
Sbjct: 180 ILLYELLTGRPPFGEDDED-PMEIYNDILKGNGKLEFPNYIDKAAKDLIKQLLRRNPEER 238
Score = 34.1 bits (79), Expect = 0.56
Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 20/137 (14%)
Query: 1446 DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 1505
+L LR+R + ++ +L+ +RDLK +N+LLD N +L
Sbjct: 79 ELWTILRDR-GLFDEYTARFYIACVVLAFEYLHNRGIIYRDLKPENLLLD---SNGYVKL 134
Query: 1506 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAG 1564
V DFG + KSG ++ G +APE+ L Y S D W+ G
Sbjct: 135 V--DFGFAKKLKSG-QKTWT-----FCGTPEYVAPEIILN-------KGYDFSVDYWSLG 179
Query: 1565 TVAYEIFGHDNPFYQSA 1581
+ YE+ PF +
Sbjct: 180 ILLYELLTGRPPFGEDD 196
>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine
Kinase, p21-activated kinase 2. Serine/threonine kinases
(STKs), p21-activated kinase (PAK) 2, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PAK subfamily is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PAKs are Rho
family GTPase-regulated kinases that serve as important
mediators in the function of Cdc42 (cell division cycle
42) and Rac. PAKs from higher eukaryotes are classified
into two groups (I and II), according to their
biochemical and structural features. PAK2 belongs to
group I. Group I PAKs contain a PBD (p21-binding domain)
overlapping with an AID (autoinhibitory domain), a
C-terminal catalytic domain, SH3 binding sites and a
non-classical SH3 binding site for PIX (PAK-interacting
exchange factor). PAK2 plays a role in pro-apoptotic
signaling. It is cleaved and activated by caspases
leading to morphological changes during apoptosis. PAK2
is also activated in response to a variety of stresses
including DNA damage, hyperosmolarity, serum starvation,
and contact inhibition, and may play a role in
coordinating the stress response. PAK2 also contributes
to cancer cell invasion through a mechanism distinct from
that of PAK1.
Length = 296
Score = 37.4 bits (86), Expect = 0.048
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 21/158 (13%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
+ L+ + L+ ++ HRD+KSDN+LL + +TDFG S + +
Sbjct: 123 ECLQALEFLHANQVIHRDIKSDNVLLGMDG-----SVKLTDFGFCAQITPEQSKRST--- 174
Query: 1008 IELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFY-QSARNTDYE 1066
+ G MAPEV T + K D W+ G +A E+ + P+ ++ Y
Sbjct: 175 --MVGTPYWMAPEV--VTRKAYG----PKVDIWSLGIMAIEMVEGEPPYLNENPLRALYL 226
Query: 1067 V--NALPQLNT--NVPEVMRRLVAKLLENDPSDRPSAE 1100
+ N P+L + + R + + LE D R SA+
Sbjct: 227 IATNGTPELQNPEKLSPIFRDFLNRCLEMDVEKRGSAK 264
Score = 33.5 bits (76), Expect = 0.88
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 16/109 (14%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
+ L+ + L+ ++ HRD+KSDN+LL + +TDFG S + +
Sbjct: 123 ECLQALEFLHANQVIHRDIKSDNVLLGMDG-----SVKLTDFGFCAQITPEQSKRST--- 174
Query: 1529 IELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF 1577
+ G MAPEV T + K D W+ G +A E+ + P+
Sbjct: 175 --MVGTPYWMAPEV--VTRKAYG----PKVDIWSLGIMAIEMVEGEPPY 215
>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C
alpha. Serine/Threonine Kinases (STKs), Classical
Protein Kinase C (cPKC) subfamily, alpha isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. There are four
cPKC isoforms, named alpha, betaI, betaII, and gamma.
PKC-alpha is expressed in many tissues and is associated
with cell proliferation, apoptosis, and cell motility. It
plays a role in the signaling of the growth factors PDGF,
VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have
been detected in many transformed cell lines and several
human tumors. In addition, PKC-alpha is required for HER2
dependent breast cancer invasion.
Length = 323
Score = 37.3 bits (86), Expect = 0.056
Identities = 42/189 (22%), Positives = 75/189 (39%), Gaps = 20/189 (10%)
Query: 915 LFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 974
L+ +M+ N Y ++ + + + ++ G+ L+ +RDLK DN++LD
Sbjct: 76 LYFVMEYVNGGDLMYHIQQVGKFKEPQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVMLD 135
Query: 975 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 1034
SE + + I DFG + M G +APE+ P Y
Sbjct: 136 -SEGH----IKIADFGMCKEH-----MVDGVTTRTFCGTPDYIAPEIIAYQP-------Y 178
Query: 1035 SKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDP 1093
KS D W G + YE+ PF + D ++ + N + P+ + + + +
Sbjct: 179 GKSVDWWAYGVLLYEMLAGQPPF--DGEDEDELFQSIMEHNVSYPKSLSKEAVSICKGLM 236
Query: 1094 SDRPSAELA 1102
+ PS L
Sbjct: 237 TKHPSKRLG 245
Score = 35.0 bits (80), Expect = 0.28
Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 18/143 (12%)
Query: 1436 LFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 1495
L+ +M+ N Y ++ + + + ++ G+ L+ +RDLK DN++LD
Sbjct: 76 LYFVMEYVNGGDLMYHIQQVGKFKEPQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVMLD 135
Query: 1496 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 1555
SE + + I DFG + M G +APE+ P Y
Sbjct: 136 -SEGH----IKIADFGMCKEH-----MVDGVTTRTFCGTPDYIAPEIIAYQP-------Y 178
Query: 1556 SKS-DAWTAGTVAYEIFGHDNPF 1577
KS D W G + YE+ PF
Sbjct: 179 GKSVDWWAYGVLLYEMLAGQPPF 201
>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional.
Length = 329
Score = 37.5 bits (87), Expect = 0.058
Identities = 37/136 (27%), Positives = 56/136 (41%), Gaps = 21/136 (15%)
Query: 963 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA 1022
+RDLK +N+LLD ++ + + +TDF G + + L G +APEV
Sbjct: 141 YRDLKPENLLLD-NKGH----VKVTDF--------GFAKKVPDRTFTLCGTPEYLAPEV- 186
Query: 1023 LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEV 1080
+ + G V D WT G + YE PF+ YE + +
Sbjct: 187 IQSKGHGKAV-----DWWTMGVLLYEFIAGYPPFFDDTPFRIYEKILAGRLKFPNWFDGR 241
Query: 1081 MRRLVAKLLENDPSDR 1096
R LV LL+ D + R
Sbjct: 242 ARDLVKGLLQTDHTKR 257
Score = 33.3 bits (76), Expect = 1.0
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 19/95 (20%)
Query: 1484 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA 1543
+RDLK +N+LLD ++ + + +TDF G + + L G +APEV
Sbjct: 141 YRDLKPENLLLD-NKGH----VKVTDF--------GFAKKVPDRTFTLCGTPEYLAPEV- 186
Query: 1544 LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFY 1578
+ + G V D WT G + YE PF+
Sbjct: 187 IQSKGHGKAV-----DWWTMGVLLYEFIAGYPPFF 216
>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases,
Fibroblast Growth Factor Receptors. Protein Tyrosine
Kinase (PTK) family; Fibroblast Growth Factor Receptor
(FGFR) subfamily; catalytic (c) domain. The FGFR
subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K).PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
FGFR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
three immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of FGFRs to their ligands, the FGFs, and to
heparin/heparan sulfate (HS) results in the formation of
a ternary complex, which leads to receptor dimerization
and activation, and intracellular signaling. There are at
least 23 FGFs and four types of FGFRs. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. FGF/FGFR signaling is
important in the regulation of embryonic development,
homeostasis, and regenerative processes. Depending on the
cell type and stage, FGFR signaling produces diverse
cellular responses including proliferation, growth
arrest, differentiation, and apoptosis. Aberrant
signaling leads to many human diseases such as skeletal,
olfactory, and metabolic disorders, as well as cancer.
Length = 293
Score = 37.0 bits (86), Expect = 0.061
Identities = 47/208 (22%), Positives = 77/208 (37%), Gaps = 63/208 (30%)
Query: 925 DLRNYLRER---------------CAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSD 969
+LR++LR R L+ + + Q+ G+ L + HRDL +
Sbjct: 102 NLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAAR 161
Query: 970 NILLDCSEDNTCPQLVITDFGSS-------YTNKSGLSMQYSSADIELGGNVALMAPEVA 1022
N+L+ +ED+ + I DFG + Y K+ + L V MAPE
Sbjct: 162 NVLV--TEDHV---MKIADFGLARDIHHIDYYRKTT--------NGRL--PVKWMAPE-- 204
Query: 1023 LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQL--------- 1073
LF V +SD W+ G + +EIF + + Y + +L
Sbjct: 205 ----ALFDRVYTHQSDVWSFGVLLWEIF--------TLGGSPYPGIPVEELFKLLKEGYR 252
Query: 1074 ---NTNVPEVMRRLVAKLLENDPSDRPS 1098
N + + L+ PS RP+
Sbjct: 253 MEKPQNCTQELYHLMRDCWHEVPSQRPT 280
Score = 37.0 bits (86), Expect = 0.064
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 43/148 (29%)
Query: 1446 DLRNYLRER---------------CAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSD 1490
+LR++LR R L+ + + Q+ G+ L + HRDL +
Sbjct: 102 NLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAAR 161
Query: 1491 NILLDCSEDNTCPQLVITDFGSS-------YTNKSGLSMQYSSADIELGGNVALMAPEVA 1543
N+L+ +ED+ + I DFG + Y K+ + L V MAPE
Sbjct: 162 NVLV--TEDHV---MKIADFGLARDIHHIDYYRKTT--------NGRL--PVKWMAPE-- 204
Query: 1544 LATPGLFSFVNYSKSDAWTAGTVAYEIF 1571
LF V +SD W+ G + +EIF
Sbjct: 205 ----ALFDRVYTHQSDVWSFGVLLWEIF 228
>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase Like 2 and 3.
Serine/Threonine Kinases (STKs), Cyclin-dependent protein
kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL2 and CDKL3
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKL2, also called
p56 KKIAMRE, is expressed in testis, kidney, lung, and
brain. It functions mainly in mature neurons and plays an
important role in learning and memory. Inactivation of
CDKL3, also called NKIAMRE (NKIATRE in rat), by
translocation is associated with mild mental retardation.
It has been reported that CDKL3 is lost in leukemic cells
having a chromosome arm 5q deletion, and may contribute
to the transformed phenotype.
Length = 286
Score = 37.0 bits (86), Expect = 0.061
Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 34/198 (17%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
Q+L G+ + H HRD+K +NIL+ S + + DFG + T + D
Sbjct: 108 QILRGIEFCHSHNIIHRDIKPENILVSQSG-----VVKLCDFGFARTLAAP---GEVYTD 159
Query: 1529 IELGGNVA---LMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNT 1584
VA APE+ + Y ++ D W G + E+ P + +
Sbjct: 160 Y-----VATRWYRAPELLVGDT------KYGRAVDIWAVGCLVTEML-TGEPLFPGDSDI 207
Query: 1585 DYWHRKWLWQHLVYSHSSTTPSTVAYEIFGHDNPFYQSARNTDY-EVNALPQLNTNVPEV 1643
D + H++ + P EIF NP + R + E+ L + + +
Sbjct: 208 DQLY------HIIKCLGNLIPRH--QEIF-QKNPLFAGMRLPEVKEIEPLEKRFPKLSGL 258
Query: 1644 MRRLVAKLLENDPSDRPS 1661
+ L + L DP DRPS
Sbjct: 259 VLDLAKQCLRIDPDDRPS 276
Score = 30.1 bits (68), Expect = 9.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILL 973
Q+L G+ + H HRD+K +NIL+
Sbjct: 108 QILRGIEFCHSHNIIHRDIKPENILV 133
>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein
Kinase 8-like Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Cyclin-Dependent protein Kinase 8
(CDK8)-like subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The CDK8-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. This
subfamily is composed of CDK8, CDC2L6, and similar
proteins. CDK8 functions as a negative or positive
regulator of transcription, depending on the scenario.
Together with its regulator, cyclin C, it reversibly
associates with the multi-subunit core Mediator complex,
a cofactor that is involved in regulating RNA polymerase
II (RNAP II)-dependent transcription. CDC2L6 also
associates with Mediator in complexes lacking CDK8. In
VP16-dependent transcriptional activation, CDK8 and
CDC2L6 exerts opposing effects by positive and negative
regulation, respectively, in similar conditions.
Length = 316
Score = 36.9 bits (86), Expect = 0.071
Identities = 45/198 (22%), Positives = 71/198 (35%), Gaps = 57/198 (28%)
Query: 1324 FIAKGTNAVVYEA----TFRGVEYALKMMFNYSAASNSHAILKAMS--KELLPLRKPLRL 1377
I +GT VY+A G EYA+K + S +E+ LR+ L
Sbjct: 7 CIGRGTYGRVYKAKRKNGKDGKEYAIKKF----KGDKEQYTGISQSACREIALLRE---L 59
Query: 1378 NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLF 1437
H NVV + F L + S++
Sbjct: 60 K-------------HENVVSLVEVF---------------------LEHA-----DKSVY 80
Query: 1438 ILMKKYNTDLRNYLR--ERCAQLSMHERIL--LFTQLLEGVTHLNMHRTAHRDLKSDNIL 1493
+L DL ++ + ++S+ ++ L Q+L GV +L+ + HRDLK NIL
Sbjct: 81 LLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNWVLHRDLKPANIL 140
Query: 1494 LDCSEDNTCPQLVITDFG 1511
+ E + I D G
Sbjct: 141 V-MGEGPERGVVKIGDLG 157
Score = 35.7 bits (83), Expect = 0.18
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 944 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 990
LL+ Q+L GV +L+ + HRDLK NIL+ E + I D G
Sbjct: 113 LLW-QILNGVHYLHSNWVLHRDLKPANILV-MGEGPERGVVKIGDLG 157
>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine
Kinase, Ephrin Receptor A10. Protein Tyrosine Kinase
(PTK) family; Ephrin Receptor (EphR) subfamily; EphA10
receptor; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. EphRs comprise the
largest subfamily of receptor tyr kinases (RTKs). In
general, class EphA receptors bind GPI-anchored ephrin-A
ligands. There are ten vertebrate EphA receptors
(EphA1-10), which display promiscuous interactions with
six ephrin-A ligands. EphRs contain an ephrin binding
domain and two fibronectin repeats extracellularly, a
transmembrane segment, and a cytoplasmic tyr kinase
domain. Binding of the ephrin ligand to EphR requires
cell-cell contact since both are anchored to the plasma
membrane. The resulting downstream signals occur
bidirectionally in both EphR-expressing cells (forward
signaling) and ephrin-expressing cells (reverse
signaling). EphA10, which contains an inactive tyr kinase
domain, may function to attenuate signals of co-clustered
active receptors. EphA10 is mainly expressed in the
testis. Ephrin/EphR interaction results in cell-cell
repulsion or adhesion, making it important in neural
development and plasticity, cell morphogenesis, cell-fate
determination, embryonic development, tissue patterning,
and angiogenesis.
Length = 266
Score = 36.8 bits (85), Expect = 0.073
Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 24/195 (12%)
Query: 911 RNMSLFILMKKY-NTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSD 969
R ++ I+ + N L ++LR+ QL + + + L G+ +L+ H+ L +
Sbjct: 77 RGNTMMIVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSEMGYVHKGLAAH 136
Query: 970 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 1029
+L+ + D C I+ F +KS Y++ G + L A A+ F
Sbjct: 137 KVLV--NSDLVCK---ISGFRRLQEDKS--EAIYTTMS---GKSPVLWAAPEAIQY-HHF 185
Query: 1030 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNA------LPQLNTNVPEVMRR 1083
S S SD W+ G V +E+ + Y D + A LP N P ++ +
Sbjct: 186 S----SASDVWSFGIVMWEVMSYGERPYWDMSGQDV-IKAVEDGFRLPA-PRNCPNLLHQ 239
Query: 1084 LVAKLLENDPSDRPS 1098
L+ + + +RP
Sbjct: 240 LMLDCWQKERGERPR 254
Score = 30.3 bits (68), Expect = 8.5
Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 16/155 (10%)
Query: 1432 RNMSLFILMKKY-NTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSD 1490
R ++ I+ + N L ++LR+ QL + + + L G+ +L+ H+ L +
Sbjct: 77 RGNTMMIVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSEMGYVHKGLAAH 136
Query: 1491 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 1550
+L+ + D C I+ F +KS Y++ G + L A A+ F
Sbjct: 137 KVLV--NSDLVCK---ISGFRRLQEDKS--EAIYTTMS---GKSPVLWAAPEAIQY-HHF 185
Query: 1551 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD 1585
S S SD W+ G V +E+ + Y D
Sbjct: 186 S----SASDVWSFGIVMWEVMSYGERPYWDMSGQD 216
>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 5. Protein kinases (PKs), MAP
kinase kinase 5 (MKK5) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK5 subfamily is part of a
larger superfamily that includes the catalytic domains of
other protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling pathways
are important mediators of cellular responses to
extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5,
also referred to as MEK5, is a dual-specificity PK that
phosphorylates its downstream target, extracellular
signal-regulated kinase 5 (ERK5), on specific threonine
and tyrosine residues. MKK5 is activated by MEKK2 and
MEKK3 in response to mitogenic and stress stimuli. The
ERK5 cascade promotes cell proliferation,
differentiation, neuronal survival, and neuroprotection.
This cascade plays an essential role in heart
development. Mice deficient in either ERK5 or MKK5 die
around embryonic day 10 due to cardiovascular defects
including underdevelopment of the myocardium. In
addition, MKK5 is associated with metastasis and
unfavorable prognosis in prostate cancer.
Length = 279
Score = 36.8 bits (85), Expect = 0.076
Identities = 41/166 (24%), Positives = 66/166 (39%), Gaps = 35/166 (21%)
Query: 949 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADI 1008
+++G+T+L + HRD+K N+L+ NT Q+ + DFG S + ++ Y
Sbjct: 104 VVKGLTYLWSLKILHRDVKPSNMLV-----NTRGQVKLCDFGVSTQLVNSIAKTY----- 153
Query: 1009 ELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARN----- 1062
+G N A MAPE Y SD W+ G E+ P+ Q +N
Sbjct: 154 -VGTN-AYMAPERISGE-------QYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLM 204
Query: 1063 --------TDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 1100
D + LP E + + + P +RP+ E
Sbjct: 205 PLQLLQCIVDEDPPVLP--VGQFSEKFVHFITQCMRKQPKERPAPE 248
Score = 36.0 bits (83), Expect = 0.12
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 20/147 (13%)
Query: 1470 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADI 1529
+++G+T+L + HRD+K N+L+ NT Q+ + DFG S + ++ Y
Sbjct: 104 VVKGLTYLWSLKILHRDVKPSNMLV-----NTRGQVKLCDFGVSTQLVNSIAKTY----- 153
Query: 1530 ELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYWH 1588
+G N A MAPE Y SD W+ G E+ P+ Q +N
Sbjct: 154 -VGTN-AYMAPERISGE-------QYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLM 204
Query: 1589 RKWLWQHLVYSHSSTTPSTVAYEIFGH 1615
L Q +V P E F H
Sbjct: 205 PLQLLQCIVDEDPPVLPVGQFSEKFVH 231
>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein.
This model represents proteins of 1350 in length, in
multiple species of Burkholderia, in Acidovorax avenae
subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1,
and in multiple copies in Sorangium cellulosum, in
genomic neighborhoods that include a
cyclodehydratase/docking scaffold fusion protein
(TIGR03882) and a member of the thiazole/oxazole
modified metabolite (TOMM) precursor family TIGR03795.
It has a kinase domain in the N-terminal 300 amino
acids, followed by a cyclase homology domain, followed
by regions without named domain definitions. It is a
probable bacteriocin-like metabolite biosynthesis
protein [Cellular processes, Toxin production and
resistance].
Length = 1266
Score = 37.5 bits (87), Expect = 0.078
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 930 LRERCAQ---LSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVI 986
LRE A L E L Q+L+ + + HRDLK NI++ + +++
Sbjct: 66 LREVLAADGALPAGETGRLMLQVLDALACAHNQGIVHRDLKPQNIMVSQTGVRPHAKVL- 124
Query: 987 TDFG 990
DFG
Sbjct: 125 -DFG 127
Score = 37.5 bits (87), Expect = 0.078
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 1451 LRERCAQ---LSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVI 1507
LRE A L E L Q+L+ + + HRDLK NI++ + +++
Sbjct: 66 LREVLAADGALPAGETGRLMLQVLDALACAHNQGIVHRDLKPQNIMVSQTGVRPHAKVL- 124
Query: 1508 TDFG 1511
DFG
Sbjct: 125 -DFG 127
>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 1 from higher
eukaryotes-like. Serine/Threonine Kinases (STKs),
Cyclin-Dependent protein Kinase 1 (CDK1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. This subfamily is composed of CDK1 from higher
eukaryotes. CDK1 is also called Cell division control
protein 2 (Cdc2) or p34 protein kinase, and is regulated
by cyclins A, B, and E. The CDK1/cyclin A complex
controls G2 phase entry and progression. CDK1/cyclin A2
has also been implicated as an important regulator of S
phase events. The CDK1/cyclin B complex is critical for
G2 to M phase transition. It induces mitosis by
activating nuclear enzymes that regulate chromatin
condensation, nuclear membrane degradation,
mitosis-specific microtubule and cytoskeletal
reorganization. CDK1 also associates with cyclin E and
plays a role in the entry into S phase. CDK1
transcription is stable throughout the cell cycle but is
modulated in some pathological conditions. It may play a
role in regulating apoptosis under these conditions. In
breast cancer cells, HER2 can mediate apoptosis by
inactivating CDK1. Activation of CDK1 may contribute to
HIV-1 induced apoptosis and neuronal apoptosis in
neurodegenerative diseases.
Length = 285
Score = 36.6 bits (85), Expect = 0.085
Identities = 51/189 (26%), Positives = 77/189 (40%), Gaps = 52/189 (27%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
Q+L+G+ + R HRDLK N+L+D + +L DFG G+ ++ + +
Sbjct: 109 QILQGILFCHSRRVLHRDLKPQNLLID---NKGVIKL--ADFG--LARAFGIPVRVYTHE 161
Query: 1008 IELGGNVAL--MAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEI------FGHDNPFYQ 1058
+ V L APEV L +P YS D W+ GT+ E+ F D+ Q
Sbjct: 162 V-----VTLWYRAPEVLLGSP------RYSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQ 210
Query: 1059 SAR--------NTDY--EVNALP------------QLNTNVPEVMRR---LVAKLLENDP 1093
R D V +LP L + V + L+ K+L DP
Sbjct: 211 LFRIFRILGTPTEDVWPGVTSLPDYKNTFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDP 270
Query: 1094 SDRPSAELA 1102
+ R SA+ A
Sbjct: 271 AKRISAKKA 279
Score = 36.6 bits (85), Expect = 0.10
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 21/105 (20%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
Q+L+G+ + R HRDLK N+L+D + +L DFG G+ ++ + +
Sbjct: 109 QILQGILFCHSRRVLHRDLKPQNLLID---NKGVIKL--ADFG--LARAFGIPVRVYTHE 161
Query: 1529 IELGGNVAL--MAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEI 1570
+ V L APEV L +P YS D W+ GT+ E+
Sbjct: 162 V-----VTLWYRAPEVLLGSP------RYSTPVDIWSIGTIFAEM 195
>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the
Serine/Threonine Kinase, p38alpha Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38alpha subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38alpha subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38alpha, also called MAPK14, is expressed in most
tissues and is the major isoform involved in the immune
and inflammatory response. It is the central p38 MAPK
involved in myogenesis. It plays a role in regulating
cell cycle check-point transition and promoting cell
differentiation. p38alpha also regulates cell
proliferation and death through crosstalk with the JNK
pathway. Its substrates include MAPK activated protein
kinase 2 (MK2), MK5, and the transcription factors ATF2
and Mitf.
Length = 345
Score = 36.9 bits (85), Expect = 0.091
Identities = 53/226 (23%), Positives = 95/226 (42%), Gaps = 58/226 (25%)
Query: 925 DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNTCP 982
DL N ++ C +L+ L Q+L G+ +++ HRDLK N+ + DC
Sbjct: 107 DLNNIVK--CQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDC------- 157
Query: 983 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVA---LMAPEVALATPGLFSFVNYSKS-D 1038
+L I DFG + D E+ G VA APE+ L ++++Y+++ D
Sbjct: 158 ELKILDFGLA-----------RHTDDEMTGYVATRWYRAPEIML------NWMHYNQTVD 200
Query: 1039 AWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQL----NTNVPEVMRRLVAKLLENDPS 1094
W+ G + E+ F TD+ ++ L + T E+++++
Sbjct: 201 IWSVGCIMAELLTGRTLF----PGTDH-IDQLKLILRLVGTPGAELLKKI---------- 245
Query: 1095 DRPSAELAATVCQLYLWAPK----HWLYGATPSHNEIMQWLLTLTT 1136
S+E A Q PK + GA P ++++ +L L +
Sbjct: 246 ---SSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDS 288
Score = 36.2 bits (83), Expect = 0.13
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 32/132 (24%)
Query: 1446 DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNTCP 1503
DL N ++ C +L+ L Q+L G+ +++ HRDLK N+ + DC
Sbjct: 107 DLNNIVK--CQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDC------- 157
Query: 1504 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVA---LMAPEVALATPGLFSFVNYSKS-D 1559
+L I DFG + D E+ G VA APE+ L ++++Y+++ D
Sbjct: 158 ELKILDFGLA-----------RHTDDEMTGYVATRWYRAPEIML------NWMHYNQTVD 200
Query: 1560 AWTAGTVAYEIF 1571
W+ G + E+
Sbjct: 201 IWSVGCIMAELL 212
>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine
Kinase, Mitogen-Activated Protein Kinase 15.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase 15 (MAPK15) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAPK15 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. Human MAPK15 is also called
Extracellular signal Regulated Kinase 8 (ERK8) while the
rat protein is called ERK7. ERK7 and ERK8 display both
similar and different biochemical properties. They
autophosphorylate and activate themselves and do not
require upstream activating kinases. ERK7 is
constitutively active and is not affected by
extracellular stimuli whereas ERK8 shows low basal
activity and is activated by DNA-damaging agents. ERK7
and ERK8 also have different substrate profiles. Genome
analysis shows that they are orthologs with similar gene
structures. ERK7 and ERK 8 may be involved in the
signaling of some nuclear receptor transcription factors.
ERK7 regulates hormone-dependent degradation of estrogen
receptor alpha while ERK8 down-regulates the
transcriptional co-activation androgen and glucocorticoid
receptors.
Length = 337
Score = 36.8 bits (86), Expect = 0.093
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 20/132 (15%)
Query: 924 TDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQ 983
TDL +R + +H+R +++ QLL+ + +++ HRDLK NILL+ S+ C +
Sbjct: 93 TDLHAVIRANILE-DVHKRYIMY-QLLKALKYIHSGNVIHRDLKPSNILLN-SD---C-R 145
Query: 984 LVITDFGSSYTNKSGLSMQYSSADIELGGNVA---LMAPEVALATPGLFSFVNYSKS-DA 1039
+ + DFG + +S ++ + + L VA APE+ L + Y+K D
Sbjct: 146 VKLADFGLA---RSLSELEENPENPVLTDYVATRWYRAPEILLGST------RYTKGVDM 196
Query: 1040 WTAGTVAYEIFG 1051
W+ G + E+
Sbjct: 197 WSVGCILGEMLL 208
Score = 36.8 bits (86), Expect = 0.093
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 20/132 (15%)
Query: 1445 TDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQ 1504
TDL +R + +H+R +++ QLL+ + +++ HRDLK NILL+ S+ C +
Sbjct: 93 TDLHAVIRANILE-DVHKRYIMY-QLLKALKYIHSGNVIHRDLKPSNILLN-SD---C-R 145
Query: 1505 LVITDFGSSYTNKSGLSMQYSSADIELGGNVA---LMAPEVALATPGLFSFVNYSKS-DA 1560
+ + DFG + +S ++ + + L VA APE+ L + Y+K D
Sbjct: 146 VKLADFGLA---RSLSELEENPENPVLTDYVATRWYRAPEILLGST------RYTKGVDM 196
Query: 1561 WTAGTVAYEIFG 1572
W+ G + E+
Sbjct: 197 WSVGCILGEMLL 208
>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C beta.
Serine/Threonine Kinases (STKs), Classical Protein
Kinase C (cPKC) subfamily, beta isoforms, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. There are four
cPKC isoforms, named alpha, betaI, betaII, and gamma. The
PKC beta isoforms (I and II), generated by alternative
splicing of a single gene, are preferentially activated
by hyperglycemia-induced DAG in retinal tissues. This is
implicated in diabetic microangiopathy such as ischemia,
neovascularization, and abnormal vasodilator function.
PKC-beta also plays an important role in VEGF signaling.
In addition, glucose regulates proliferation in retinal
endothelial cells via PKC-betaI. PKC-beta is also being
explored as a therapeutic target in cancer. It
contributes to tumor formation and is involved in the
tumor host mechanisms of inflammation and angiogenesis.
Length = 323
Score = 36.5 bits (84), Expect = 0.10
Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 26/151 (17%)
Query: 952 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK-SGLSMQYSSADIEL 1010
G+ L+ +RDLK DN++LD SE + + I DFG N G++ +
Sbjct: 113 GLFFLHSKGIIYRDLKLDNVMLD-SEGH----IKIADFGMCKENMWDGVTTK------TF 161
Query: 1011 GGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNA 1069
G +APE+ P Y KS D W G + YE+ PF + D +
Sbjct: 162 CGTPDYIAPEIIAYQP-------YGKSVDWWAFGVLLYEMLAGQAPF--EGEDEDELFQS 212
Query: 1070 LPQLNTNVPEVMRR----LVAKLLENDPSDR 1096
+ + N P+ M + + L+ P R
Sbjct: 213 IMEHNVAYPKSMSKEAVAICKGLMTKHPGKR 243
Score = 35.7 bits (82), Expect = 0.21
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 20/107 (18%)
Query: 1473 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK-SGLSMQYSSADIEL 1531
G+ L+ +RDLK DN++LD SE + + I DFG N G++ +
Sbjct: 113 GLFFLHSKGIIYRDLKLDNVMLD-SEGH----IKIADFGMCKENMWDGVTTK------TF 161
Query: 1532 GGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPF 1577
G +APE+ P Y KS D W G + YE+ PF
Sbjct: 162 CGTPDYIAPEIIAYQP-------YGKSVDWWAFGVLLYEMLAGQAPF 201
>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the
Serine/Threonine Kinases, TDY Mitogen-Activated Protein
Kinases from Plants. Serine/Threonine Kinases (STKs),
Plant TDY Mitogen-Activated Protein Kinase (MAPK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The TDY
MAPK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKs are important mediators of cellular
responses to extracellular signals. In plants, MAPKs are
associated with physiological, developmental, hormonal,
and stress responses. Some plants show numerous gene
duplications of MAPKs. Arabidopsis thaliana harbors at
least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at
least 17 MAPKs. There are two subtypes of plant MAPKs
based on the conserved phosphorylation motif present in
the activation loop, TEY and TDY. Arabidopsis thaliana
contains more TEY-type MAPKs than TDY-type, whereas the
reverse is true for Oryza sativa. This subfamily
represents the TDY subtype and is composed of Group D
plant MAPKs including Arabidopsis thaliana MPK18
(AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1
(OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1),
Zea mays MPK6, and the Medicago sativa TDY1 gene product.
OsBWMK1 enhances resistance to pathogenic infections. It
mediates stress-activated defense responses by activating
a transcription factor that affects the expression of
stress-related genes. AtMPK18 is involved in
microtubule-related functions.
Length = 338
Score = 36.7 bits (85), Expect = 0.11
Identities = 95/372 (25%), Positives = 140/372 (37%), Gaps = 113/372 (30%)
Query: 1320 QIGKFIAKGTNAVVYEA--TFRGVEYALKMMFN-YSAASNSHAILKAMSKELLPLRKPLR 1376
+I + I KG+ VV A T G + A+K + + + S++ IL+ + K L LR P
Sbjct: 3 KIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREI-KLLRLLRHPDI 61
Query: 1377 LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSL 1436
+ +M LPP F D IY +
Sbjct: 62 VEIKHIM-----LPPSRR------EFKD----------IY------------------VV 82
Query: 1437 FILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL-- 1494
F LM+ +DL ++ H + L+ QLL + +++ HRDLK NIL
Sbjct: 83 FELME---SDLHQVIKANDDLTPEHHQFFLY-QLLRALKYIHTANVFHRDLKPKNILANA 138
Query: 1495 DCSEDNTCPQLVITDFGSS--YTNKSGLSMQYSSADIELGGNVA---LMAPEVALATPGL 1549
DC +L I DFG + N + ++ ++ VA APE+ G
Sbjct: 139 DC-------KLKICDFGLARVAFNDTPTAIFWTDY-------VATRWYRAPELC----GS 180
Query: 1550 FSFVNYSKS-DAWTAGTVAYEI------FGHDNPFYQSARNTDYWHRKWLWQHLVYSHSS 1602
F F Y+ + D W+ G + E+ F N +Q TD L+ + S
Sbjct: 181 F-FSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITD----------LLGTPSP 229
Query: 1603 TTPSTVAYEIF---------GHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLE 1653
T S V E PF Q N D P + RL+ +LL
Sbjct: 230 ETISRVRNEKARRYLSSMRKKQPVPFSQKFPNAD-------------PLAL-RLLERLLA 275
Query: 1654 NDPSDRPSAELA 1665
DP DRP+AE A
Sbjct: 276 FDPKDRPTAEEA 287
Score = 36.3 bits (84), Expect = 0.12
Identities = 57/211 (27%), Positives = 80/211 (37%), Gaps = 75/211 (35%)
Query: 940 HERILLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNTCPQLVITDFGSS--YTN 995
H + L+ QLL + +++ HRDLK NIL DC +L I DFG + N
Sbjct: 104 HHQFFLY-QLLRALKYIHTANVFHRDLKPKNILANADC-------KLKICDFGLARVAFN 155
Query: 996 KSGLSMQYSSADIELGGNVA---LMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEI-- 1049
+ ++ ++ VA APE+ G F F Y+ + D W+ G + E+
Sbjct: 156 DTPTAIFWTDY-------VATRWYRAPELC----GSF-FSKYTPAIDIWSIGCIFAEVLT 203
Query: 1050 ----FGHDNPFYQSARNTDYEVNALPQLNTNVPEV---------------MR-------- 1082
F N +Q TD L T PE MR
Sbjct: 204 GKPLFPGKNVVHQLDLITDL-------LGTPSPETISRVRNEKARRYLSSMRKKQPVPFS 256
Query: 1083 -----------RLVAKLLENDPSDRPSAELA 1102
RL+ +LL DP DRP+AE A
Sbjct: 257 QKFPNADPLALRLLERLLAFDPKDRPTAEEA 287
>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase,
Nemo-Like Kinase. Serine/Threonine Kinases (STKs),
Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The NLK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Mitogen-activated protein
kinases (MAPKs) are important mediators of cellular
responses to extracellular signals. NLK is an atypical
MAPK that is not regulated by a MAPK kinase. It
functions downstream of the MAPK kinase kinase Tak1,
which also plays a role in activating the JNK and p38
MAPKs. The Tak1/NLK pathways are regulated by Wnts, a
family of secreted proteins that is critical in the
control of asymmetric division and cell polarity. NLK
can phosphorylate transcription factors from the TCF/LEF
family, inhibiting their ability to activate the
transcription of target genes. In prostate cancer cells,
NLK is involved in regulating androgen receptor-mediated
transcription and its expression is altered during
cancer progression.
Length = 372
Score = 36.6 bits (85), Expect = 0.12
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 915 LFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 974
++++ + +DL + S H ++ L+ Q+L G+ +L+ HRD+K N+L+
Sbjct: 79 IYVVTELMQSDLHKIIVSPQPLSSDHVKVFLY-QILRGLKYLHSAGILHRDIKPGNLLV- 136
Query: 975 CSEDNTCPQLVITDFG 990
++ C L I DFG
Sbjct: 137 ---NSNC-VLKICDFG 148
Score = 36.6 bits (85), Expect = 0.12
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 1436 LFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 1495
++++ + +DL + S H ++ L+ Q+L G+ +L+ HRD+K N+L+
Sbjct: 79 IYVVTELMQSDLHKIIVSPQPLSSDHVKVFLY-QILRGLKYLHSAGILHRDIKPGNLLV- 136
Query: 1496 CSEDNTCPQLVITDFG 1511
++ C L I DFG
Sbjct: 137 ---NSNC-VLKICDFG 148
>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated
protein kinase kinase kinase kinase-like Protein
Serine/Threonine Kinases. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K3-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. This
subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and
related proteins. Vertebrate members contain an
N-terminal catalytic domain and a C-terminal citron
homology (CNH) regulatory domain, similar to MAP4K4/6.
MAP4Ks are involved in some MAPK signaling pathways that
are important in mediating cellular responses to
extracellular signals by activating a MAPK kinase kinase
(MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated
either by a small GTP-binding protein or by an adaptor
protein, which transmits the signal either directly to a
MAP3K to start the triple kinase core cascade or
indirectly through a mediator kinase, a MAP4K. MAP4K1,
also called haematopoietic progenitor kinase 1 (HPK1), is
a hematopoietic-specific STK involved in many cellular
signaling cascades including MAPK, antigen receptor,
apoptosis, growth factor, and cytokine signaling. It
participates in the regulation of T cell receptor
signaling and T cell-mediated immune responses. MAP4K2
was referred to as germinal center (GC) kinase because of
its preferred location in GC B cells. MAP4K3 plays a role
in the nutrient-responsive pathway of mTOR (mammalian
target of rapamycin) signaling. It is required in the
activation of S6 kinase by amino acids and for the
phosphorylation of the mTOR-regulated inhibitor of
eukaryotic initiation factor 4E. MAP4K5, also called
germinal center kinase-related enzyme (GCKR), has been
shown to activate the MAPK c-Jun N-terminal kinase (JNK).
Length = 262
Score = 36.1 bits (84), Expect = 0.12
Identities = 57/213 (26%), Positives = 81/213 (38%), Gaps = 43/213 (20%)
Query: 907 GGYGRNMSLFILMKKYN-----TDLRNYLRERCAQLSMHERILLFT-QLLEGVTHLNMHR 960
G Y R L+I+M+ Y D+ R ++L +I + L+G+ +L+
Sbjct: 67 GSYLRRDKLWIVME-YCGGGSLQDIYQVTRGPLSEL----QIAYVCRETLKGLAYLHETG 121
Query: 961 TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPE 1020
HRD+K NILL +ED + + DFG S + ++ + S G MAPE
Sbjct: 122 KIHRDIKGANILL--TEDG---DVKLADFGVSAQLTATIAKRKS-----FIGTPYWMAPE 171
Query: 1021 VALATPGLFSFVNY-SKSDAWTAGTVAYEIFGHDNP----------FYQSARNTDYEVNA 1069
VA Y K D W G A E+ P F S N
Sbjct: 172 VAAVE----RKGGYDGKCDIWALGITAIELAELQPPMFDLHPMRALFLISKSNFP----- 222
Query: 1070 LPQLN--TNVPEVMRRLVAKLLENDPSDRPSAE 1100
P+L V + K L DP RP+A
Sbjct: 223 PPKLKDKEKWSPVFHDFIKKCLTKDPKKRPTAT 255
Score = 35.3 bits (82), Expect = 0.20
Identities = 43/149 (28%), Positives = 63/149 (42%), Gaps = 26/149 (17%)
Query: 1428 GGYGRNMSLFILMKKYN-----TDLRNYLRERCAQLSMHERILLFT-QLLEGVTHLNMHR 1481
G Y R L+I+M+ Y D+ R ++L +I + L+G+ +L+
Sbjct: 67 GSYLRRDKLWIVME-YCGGGSLQDIYQVTRGPLSEL----QIAYVCRETLKGLAYLHETG 121
Query: 1482 TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPE 1541
HRD+K NILL +ED + + DFG S + ++ + S G MAPE
Sbjct: 122 KIHRDIKGANILL--TEDG---DVKLADFGVSAQLTATIAKRKS-----FIGTPYWMAPE 171
Query: 1542 VALATPGLFSFVNY-SKSDAWTAGTVAYE 1569
VA Y K D W G A E
Sbjct: 172 VAAVE----RKGGYDGKCDIWALGITAIE 196
>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase,
Src. Protein Tyrosine Kinase (PTK) family; Src kinase;
catalytic (c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates. Src
(or c-Src) is a cytoplasmic (or non-receptor) tyr kinase,
containing an N-terminal SH4 domain with a myristoylation
site, followed by SH3 and SH2 domains, a tyr kinase
domain, and a regulatory C-terminal region with a
conserved tyr. It is activated by autophosphorylation at
the tyr kinase domain, and is negatively regulated by
phosphorylation at the C-terminal tyr by Csk (C-terminal
Src Kinase). c-Src is the vertebrate homolog of the
oncogenic protein (v-Src) from Rous sarcoma virus.
Together with other Src subfamily proteins, it is
involved in signaling pathways that regulate cytokine and
growth factor responses, cytoskeleton dynamics, cell
proliferation, survival, and differentiation. Src also
play a role in regulating cell adhesion, invasion, and
motility in cancer cells and tumor vasculature,
contributing to cancer progression and metastasis.
Elevated levels of Src kinase activity have been reported
in a variety of human cancers. Several inhibitors of Src
have been developed as anti-cancer drugs. Src is also
implicated in acute inflammatory responses and osteoclast
function.
Length = 262
Score = 36.2 bits (83), Expect = 0.13
Identities = 42/179 (23%), Positives = 71/179 (39%), Gaps = 41/179 (22%)
Query: 937 LSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG------ 990
L + + + + Q+ G+ ++ HRDL++ NIL+ E+ C + DFG
Sbjct: 99 LRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILV--GENLVCK---VADFGLARLIE 153
Query: 991 -SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 1049
+ YT + G + APE AL G F+ KSD W+ G + E+
Sbjct: 154 DNEYTARQGAKFP-----------IKWTAPEAALY--GRFTI----KSDVWSFGILLTEL 196
Query: 1050 FGHDNPFYQSARNTD--------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 1100
Y N + Y + P+ PE + L+ + +P +RP+ E
Sbjct: 197 TTKGRVPYPGMVNREVLDQVERGYRMPCPPE----CPESLHDLMCQCWRKEPEERPTFE 251
Score = 32.7 bits (74), Expect = 1.4
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 29/120 (24%)
Query: 1458 LSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG------ 1511
L + + + + Q+ G+ ++ HRDL++ NIL+ E+ C + DFG
Sbjct: 99 LRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILV--GENLVCK---VADFGLARLIE 153
Query: 1512 -SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 1570
+ YT + G + APE AL G F+ KSD W+ G + E+
Sbjct: 154 DNEYTARQGAKFP-----------IKWTAPEAALY--GRFTI----KSDVWSFGILLTEL 196
>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein Serine/Threonine
Kinase, Citron Rho-interacting kinase. Serine/Threonine
Kinases (STKs), Citron Rho-interacting kinase (CRIK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The CRIK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CRIK is also called citron kinase. It contains
a catalytic domain, a central coiled-coil domain, and a
C-terminal region containing a Rho-binding domain (RBD),
a zinc finger, and a pleckstrin homology (PH) domain, in
addition to other motifs. CRIK, an effector of the small
GTPase Rho, plays an important function during
cytokinesis and affects its contractile process.
CRIK-deficient mice show severe ataxia and epilepsy as a
result of abnormal cytokinesis and massive apoptosis in
neuronal precursors. A Down syndrome critical region
protein TTC3 interacts with CRIK and inhibits
CRIK-dependent neuronal differentiation and neurite
extension.
Length = 330
Score = 36.3 bits (84), Expect = 0.13
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 963 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA 1022
HRD+K +N+L+D + + DFGS+ + M S + G +APEV
Sbjct: 125 HRDIKPENVLID-----RTGHIKLADFGSA-ARLTANKMVNSKLPV---GTPDYIAPEVL 175
Query: 1023 LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF 1056
G + D W+ G +AYE+ +PF
Sbjct: 176 TTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPF 209
Score = 36.3 bits (84), Expect = 0.13
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 1484 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA 1543
HRD+K +N+L+D + + DFGS+ + M S + G +APEV
Sbjct: 125 HRDIKPENVLID-----RTGHIKLADFGSA-ARLTANKMVNSKLPV---GTPDYIAPEVL 175
Query: 1544 LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF 1577
G + D W+ G +AYE+ +PF
Sbjct: 176 TTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPF 209
>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine
Kinase, Group I p21-activated kinase. Serine/threonine
kinases (STKs), p21-activated kinase (PAK) subfamily,
Group I, catalytic (c) domain. STKs catalyze the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs are
implicated in the regulation of many cellular processes
including growth factor receptor-mediated proliferation,
cell polarity, cell motility, cell death and survival,
and actin cytoskeleton organization. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group I PAKs, also called conventional PAKs, include
PAK1, PAK2, and PAK3. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). They interact
with the SH3 domain containing proteins Nck, Grb2 and
PIX. Binding of group I PAKs to activated GTPases leads
to conformational changes that destabilize the AID,
allowing autophosphorylation and full activation of the
kinase domain. Known group I PAK substrates include MLCK,
Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and
Aurora A, among others.
Length = 293
Score = 36.0 bits (83), Expect = 0.13
Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 29/161 (18%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
+ L+ + L+ ++ HRD+KSDNILL + +TDFG ++ + S
Sbjct: 123 ECLQALEFLHSNQVIHRDIKSDNILLGMDG-----SVKLTDFGFCAQ----ITPEQSKRS 173
Query: 1008 IELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI------FGHDNPF---YQ 1058
+ G MAPEV T + K D W+ G +A E+ + ++NP Y
Sbjct: 174 T-MVGTPYWMAPEV--VTRKAYG----PKVDIWSLGIMAIEMVEGEPPYLNENPLRALYL 226
Query: 1059 SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA 1099
A N E+ +L+ + R + + LE D R SA
Sbjct: 227 IATNGTPELQNPEKLSA----IFRDFLNRCLEMDVEKRGSA 263
Score = 34.5 bits (79), Expect = 0.41
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 16/109 (14%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
+ L+ + L+ ++ HRD+KSDNILL + +TDFG ++ + S
Sbjct: 123 ECLQALEFLHSNQVIHRDIKSDNILLGMDG-----SVKLTDFGFCAQ----ITPEQSKRS 173
Query: 1529 IELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF 1577
+ G MAPEV T + K D W+ G +A E+ + P+
Sbjct: 174 T-MVGTPYWMAPEV--VTRKAYG----PKVDIWSLGIMAIEMVEGEPPY 215
>gnl|CDD|173653 cd05105, PTKc_PDGFR_alpha, Catalytic domain of the Protein Tyrosine
Kinase, Platelet Derived Growth Factor Receptor alpha.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) alpha; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases such
as protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. PDGFR
alpha is a receptor tyr kinase (RTK) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment, and
an intracellular catalytic domain. The binding to its
ligands, the PDGFs, leads to receptor dimerization, trans
phosphorylation and activation, and intracellular
signaling. PDGFR alpha forms homodimers or heterodimers
with PDGFR beta, depending on the nature of the PDGF
ligand. PDGF-AA, PDGF-AB, and PDGF-CC induce PDGFR alpha
homodimerization. PDGFR signaling plays many roles in
normal embryonic development and adult physiology. PDGFR
alpha signaling is important in the formation of lung
alveoli, intestinal villi, mesenchymal dermis, and hair
follicles, as well as in the development of
oligodendrocytes, retinal astrocytes, neural crest cells,
and testicular cells. Aberrant PDGFR alpha expression is
associated with some human cancers. Mutations in PDGFR
alpha have been found within a subset of gastrointestinal
stromal tumors (GISTs). An active fusion protein
FIP1L1-PDGFR alpha, derived from interstitial deletion,
is associated with idiopathic hypereosinophilic syndrome
(HES) and chronic eosinophilic leukemia (CEL).
Length = 400
Score = 36.2 bits (83), Expect = 0.16
Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 46/175 (26%)
Query: 943 ILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG--------SSY 993
+L FT Q+ G+ L HRDL + N+LL + + I DFG S+Y
Sbjct: 239 LLSFTYQVARGMEFLASKNCVHRDLAARNVLLAQGK-----IVKICDFGLARDIMHDSNY 293
Query: 994 TNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGH- 1052
+K + V MAPE +F + + SD W+ G + +EIF
Sbjct: 294 VSKGSTFLP-----------VKWMAPE------SIFDNLYTTLSDVWSYGILLWEIFSLG 336
Query: 1053 ---------DNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS 1098
D+ FY + + Y + V ++M K ++P RPS
Sbjct: 337 GTPYPGMIVDSTFYNKIK-SGYRMAKPDHATQEVYDIM----VKCWNSEPEKRPS 386
Score = 31.9 bits (72), Expect = 3.0
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 31/117 (26%)
Query: 1464 ILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG--------SSY 1514
+L FT Q+ G+ L HRDL + N+LL + + I DFG S+Y
Sbjct: 239 LLSFTYQVARGMEFLASKNCVHRDLAARNVLLAQGK-----IVKICDFGLARDIMHDSNY 293
Query: 1515 TNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 1571
+K + V MAPE +F + + SD W+ G + +EIF
Sbjct: 294 VSKGSTFLP-----------VKWMAPE------SIFDNLYTTLSDVWSYGILLWEIF 333
>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C iota.
Serine/Threonine Kinases (STKs), Atypical Protein Kinase
C (aPKC) subfamily, iota isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The aPKC subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PKCs are classified into three
groups (classical, atypical, and novel) depending on
their mode of activation and the structural
characteristics of their regulatory domain. aPKCs only
require phosphatidylserine (PS) for activation. There are
two aPKC isoforms, zeta and iota. PKC-iota is directly
implicated in carcinogenesis. It is critical to oncogenic
signaling mediated by Ras and Bcr-Abl. The PKC-iota gene
is the target of tumor-specific gene amplification in
many human cancers, and has been identified as a human
oncogene. In addition to its role in transformed growth,
PKC-iota also promotes invasion, chemoresistance, and
tumor cell survival. Expression profiling of PKC-iota is
a prognostic marker of poor clinical outcome in several
human cancers. PKC-iota also plays a role in establishing
cell polarity, and has critical embryonic functions.
Length = 329
Score = 35.8 bits (82), Expect = 0.18
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 27/156 (17%)
Query: 952 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG 1011
+ +L+ +RDLK DN+LLD SE + + +TD+G K GL +++
Sbjct: 108 ALNYLHERGIIYRDLKLDNVLLD-SEGH----IKLTDYGMC---KEGLRPGDTTS--TFC 157
Query: 1012 GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF------YQSARNT-D 1064
G +APE+ FS D W G + +E+ +PF +NT D
Sbjct: 158 GTPNYIAPEILRGEDYGFSV------DWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTED 211
Query: 1065 YEVNALPQLNTNVPEVMRRLVAKLLEN----DPSDR 1096
Y + + +P + A +L++ DP +R
Sbjct: 212 YLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKER 247
Score = 33.9 bits (77), Expect = 0.68
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 18/124 (14%)
Query: 1473 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG 1532
+ +L+ +RDLK DN+LLD SE + + +TD+G K GL +++
Sbjct: 108 ALNYLHERGIIYRDLKLDNVLLD-SEGH----IKLTDYGMC---KEGLRPGDTTS--TFC 157
Query: 1533 GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF--YQSARNTDYWHRK 1590
G +APE+ FS D W G + +E+ +PF S+ N D
Sbjct: 158 GTPNYIAPEILRGEDYGFSV------DWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTED 211
Query: 1591 WLWQ 1594
+L+Q
Sbjct: 212 YLFQ 215
>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase,
Epidermal Growth Factor Receptor. Protein Tyrosine
Kinase (PTK) family; Epidermal Growth Factor Receptor
(EGFR); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. EGFR (HER1, ErbB1) is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation loop
of EGFR proteins is not critical to their activation.
Instead, they are activated by ligand-induced
dimerization, leading to the phosphorylation of tyr
residues in the C-terminal tail, which serve as binding
sites for downstream signaling molecules. Ligands for
EGFR include EGF, heparin binding EGF-like growth factor
(HBEGF), epiregulin, amphiregulin, TGFalpha, and
betacellulin. Upon ligand binding, EGFR can form homo- or
heterodimers with other EGFR subfamily members. The EGFR
signaling pathway is one of the most important pathways
regulating cell proliferation, differentiation, survival,
and growth. Overexpression and mutation in the kinase
domain of EGFR have been implicated in the development
and progression of a variety of cancers. A number of
monoclonal antibodies and small molecule inhibitors have
been developed that target EGFR, including the antibodies
Cetuximab and Panitumumab, which are used in combination
with other therapies for the treatment of colorectal
cancer and non-small cell lung carcinoma (NSCLC). The
small molecule inhibitors Gefitinib (Iressa) and
Erlotinib (Tarceva), already used for NSCLC, are
undergoing clinical trials for other types of cancer
including gastrointestinal, breast, head and neck, and
bladder.
Length = 316
Score = 35.7 bits (82), Expect = 0.19
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 926 LRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 985
L +Y+RE + + Q+ +G+ +L R HRDL + N+L+ PQ V
Sbjct: 95 LLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEERRLVHRDLAARNVLV------KTPQHV 148
Query: 986 -ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGT 1044
ITDFG + G + A+ GG V P +A + + +SD W+ G
Sbjct: 149 KITDFGLA--KLLGADEKEYHAE---GGKV----PIKWMALESILHRIYTHQSDVWSYGV 199
Query: 1045 VAYEI--FG 1051
+E+ FG
Sbjct: 200 TVWELMTFG 208
Score = 35.7 bits (82), Expect = 0.19
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 1447 LRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 1506
L +Y+RE + + Q+ +G+ +L R HRDL + N+L+ PQ V
Sbjct: 95 LLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEERRLVHRDLAARNVLV------KTPQHV 148
Query: 1507 -ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGT 1565
ITDFG + G + A+ GG V P +A + + +SD W+ G
Sbjct: 149 KITDFGLA--KLLGADEKEYHAE---GGKV----PIKWMALESILHRIYTHQSDVWSYGV 199
Query: 1566 VAYEI--FG 1572
+E+ FG
Sbjct: 200 TVWELMTFG 208
>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine
Kinases, Met and Ron. Protein Tyrosine Kinase (PTK)
family; Met and Ron; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Met and
Ron are receptor tyr kinases (RTKs) composed of an
alpha-beta heterodimer. The extracellular alpha chain is
disulfide linked to the beta chain, which contains an
extracellular ligand-binding region with a sema domain, a
PSI domain and four IPT repeats, a transmembrane segment,
and an intracellular catalytic domain. Binding to their
ligands leads to receptor dimerization,
autophosphorylation, activation, and intracellular
signaling. Met binds to the ligand, hepatocyte growth
factor/scatter factor (HGF/SF), and is also called the
HGF receptor. HGF/Met signaling plays a role in growth,
transformation, cell motility, invasion, metastasis,
angiogenesis, wound healing, and tissue regeneration.
Aberrant expression of Met through mutations or gene
amplification is associated with many human cancers
including hereditary papillary renal and gastric
carcinomas. The ligand for Ron is macrophage stimulating
protein (MSP). Ron signaling is important in regulating
cell motility, adhesion, proliferation, and apoptosis.
Aberrant Ron expression is implicated in tumorigenesis
and metastasis.
Length = 262
Score = 35.5 bits (82), Expect = 0.20
Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 23/193 (11%)
Query: 925 DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 984
DLRN++R ++ + I Q+ +G+ +L + HRDL + N +LD E T +
Sbjct: 83 DLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLASKKFVHRDLAARNCMLD--ESFT---V 137
Query: 985 VITDFGSSYTNKSGLSMQYSSADIELGGN--VALMAPEVALATPGLFSFVNYSKSDAWTA 1042
+ DFG + + +Y S G V MA E +L T F +KSD W+
Sbjct: 138 KVADFGLA---RDIYDKEYYSVHNHTGAKLPVKWMALE-SLQT---QKFT--TKSDVWSF 188
Query: 1043 GTVAYEIFGHDNPFYQSARNTDYEV-----NALPQLNTNVPEVMRRLVAKLLENDPSDRP 1097
G + +E+ P Y + D V L Q P+ + ++ P RP
Sbjct: 189 GVLLWELMTRGAPPYPDVDSFDITVYLLQGRRLLQPEY-CPDPLYEVMLSCWHPKPEMRP 247
Query: 1098 S-AELAATVCQLY 1109
+ +EL + + Q++
Sbjct: 248 TFSELVSRIEQIF 260
Score = 32.8 bits (75), Expect = 1.2
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 16/135 (11%)
Query: 1446 DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 1505
DLRN++R ++ + I Q+ +G+ +L + HRDL + N +LD E T +
Sbjct: 83 DLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLASKKFVHRDLAARNCMLD--ESFT---V 137
Query: 1506 VITDFGSSYTNKSGLSMQYSSADIELGGN--VALMAPEVALATPGLFSFVNYSKSDAWTA 1563
+ DFG + + +Y S G V MA E +L T F +KSD W+
Sbjct: 138 KVADFGLA---RDIYDKEYYSVHNHTGAKLPVKWMALE-SLQT---QKFT--TKSDVWSF 188
Query: 1564 GTVAYEIFGHDNPFY 1578
G + +E+ P Y
Sbjct: 189 GVLLWELMTRGAPPY 203
>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 9.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 9 (CDK9) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK9 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK9
together with a cyclin partner (cyclin T1, T2a, T2b, or
K) is the main component of distinct positive
transcription elongation factors (P-TEFb), which
function as Ser2 C-terminal domain kinases of RNA
polymerase II. P-TEFb participates in multiple steps of
gene expression including transcription elongation, mRNA
synthesis, processing, export, and translation. It also
plays a role in mediating cytokine induced transcription
networks such as IL6-induced STAT3 signaling. In
addition, the CDK9/cyclin T2a complex promotes muscle
differentiation and enhances the function of some
myogenic regulatory factors.
Length = 310
Score = 35.4 bits (82), Expect = 0.22
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 902 RLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRT 961
R T S +++ + DL L + + ++ E + LL G+ +++ ++
Sbjct: 81 RTKATPYNRYKGSFYLVFEFCEHDLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHRNKI 140
Query: 962 AHRDLKSDNILLDCSEDNTCPQLVITDFG 990
HRD+K+ NIL+ ++D L + DFG
Sbjct: 141 LHRDMKAANILI--TKDGI---LKLADFG 164
Score = 35.4 bits (82), Expect = 0.22
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 1423 RLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRT 1482
R T S +++ + DL L + + ++ E + LL G+ +++ ++
Sbjct: 81 RTKATPYNRYKGSFYLVFEFCEHDLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHRNKI 140
Query: 1483 AHRDLKSDNILLDCSEDNTCPQLVITDFG 1511
HRD+K+ NIL+ ++D L + DFG
Sbjct: 141 LHRDMKAANILI--TKDGI---LKLADFG 164
>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase,
Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK)
family; Spleen tyrosine kinase (Syk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases such
as protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Syk,
together with Zap-70, form the Syk subfamily of kinases
which are cytoplasmic (or nonreceptor) tyr kinases
containing two Src homology 2 (SH2) domains N-terminal to
the catalytic tyr kinase domain. Syk was first cloned
from the spleen, and its function in hematopoietic cells
is well-established. Syk is involved in the signaling
downstream of activated receptors (including B-cell and
Fc receptors) that contain ITAMs (immunoreceptor tyr
activation motifs), leading to processes such as cell
proliferation, differentiation, survival, adhesion,
migration, and phagocytosis. More recently, Syk
expression has been detected in other cell types
(including epithelial cells, vascular endothelial cells,
neurons, hepatocytes, and melanocytes), suggesting a
variety of biological functions in non-immune cells. Syk
plays a critical role in maintaining vascular integrity
and in wound healing during embryogenesis. It also
regulates Vav3, which is important in osteoclast function
including bone development. In breast epithelial cells,
where Syk acts as a negative regulator for epidermal
growth factor receptor (EGFR) signaling, loss of Syk
expression is associated with abnormal proliferation
during cancer development suggesting a potential role as
a tumor suppressor. In mice, Syk has been shown to
inhibit malignant transformation of mammary epithelial
cells induced with murine mammary tumor virus (MMTV).
Length = 257
Score = 35.3 bits (81), Expect = 0.22
Identities = 41/162 (25%), Positives = 58/162 (35%), Gaps = 25/162 (15%)
Query: 945 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 1004
L Q+ G+ +L HRDL + N+LL T I+DFG S G Y
Sbjct: 100 LVHQVSMGMKYLEETNFVHRDLAARNVLL-----VTQHYAKISDFGLS--KALGADENYY 152
Query: 1005 SADIELGGNVALMAPEVALATPGLFSFVNY----SKSDAWTAGTVAYEIFGHDNPFYQSA 1060
A V APE +NY SKSD W+ G + +E F + Y+
Sbjct: 153 KAKTHGKWPVKWYAPEC----------MNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGM 202
Query: 1061 RNTDY----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS 1098
+ + E + P M L+ +RP
Sbjct: 203 KGNEVTQMIESGERMECPQRCPPEMYDLMKLCWTYGVDERPG 244
Score = 34.6 bits (79), Expect = 0.41
Identities = 35/124 (28%), Positives = 49/124 (39%), Gaps = 21/124 (16%)
Query: 1466 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 1525
L Q+ G+ +L HRDL + N+LL T I+DFG S G Y
Sbjct: 100 LVHQVSMGMKYLEETNFVHRDLAARNVLL-----VTQHYAKISDFGLS--KALGADENYY 152
Query: 1526 SADIELGGNVALMAPEVALATPGLFSFVNY----SKSDAWTAGTVAYEIFGHDNPFYQSA 1581
A V APE +NY SKSD W+ G + +E F + Y+
Sbjct: 153 KAKTHGKWPVKWYAPEC----------MNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGM 202
Query: 1582 RNTD 1585
+ +
Sbjct: 203 KGNE 206
>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit;
Provisional.
Length = 340
Score = 35.7 bits (82), Expect = 0.22
Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 34/155 (21%)
Query: 949 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADI 1008
+ E + LN+ +RDLK +N+LLD +D + +TDFG + +
Sbjct: 143 IFEYLQSLNI---VYRDLKPENLLLD--KDGF---IKMTDFG--------FAKVVDTRTY 186
Query: 1009 ELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYE- 1066
L G +APE+ L V + K+ D WT G YEI PFY + Y+
Sbjct: 187 TLCGTPEYIAPEILLN-------VGHGKAADWWTLGIFIYEILVGCPPFYANEPLLIYQK 239
Query: 1067 ----VNALPQ-LNTNVPEVMRRLVAKLLENDPSDR 1096
+ P+ L+ N +M+ KLL +D + R
Sbjct: 240 ILEGIIYFPKFLDNNCKHLMK----KLLSHDLTKR 270
Score = 33.0 bits (75), Expect = 1.4
Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 24/110 (21%)
Query: 1470 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADI 1529
+ E + LN+ +RDLK +N+LLD +D + +TDFG + +
Sbjct: 143 IFEYLQSLNI---VYRDLKPENLLLD--KDGF---IKMTDFG--------FAKVVDTRTY 186
Query: 1530 ELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFY 1578
L G +APE+ L V + K+ D WT G YEI PFY
Sbjct: 187 TLCGTPEYIAPEILLN-------VGHGKAADWWTLGIFIYEILVGCPPFY 229
>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine
Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK)
family; Fyn and Yrk kinases; catalytic (c) domain. The
PTKc family is part of a larger superfamily that includes
the catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fyn and
Yrk are members of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the C-terminal
tyr by Csk (C-terminal Src Kinase). Src proteins are
involved in signaling pathways that regulate cytokine and
growth factor responses, cytoskeleton dynamics, cell
proliferation, survival, and differentiation. Fyn,
together with Lck, plays a critical role in T-cell signal
transduction by phosphorylating ITAM (immunoreceptor tyr
activation motif) sequences on T-cell receptors,
ultimately leading to the proliferation and
differentiation of T-cells. In addition, Fyn is involved
in the myelination of neurons, and is implicated in
Alzheimer's and Parkinson's diseases. Yrk has been
detected only in chickens. It is primarily found in
neuronal and epithelial cells and in macrophages. It may
play a role in inflammation and in response to injury.
Length = 260
Score = 35.0 bits (80), Expect = 0.25
Identities = 41/164 (25%), Positives = 63/164 (38%), Gaps = 33/164 (20%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLS 1000
Q+ G+ ++ HRDL+S NIL+ + C I DFG + YT + G
Sbjct: 110 QVAAGMAYIERMNYIHRDLRSANILV--GDGLVCK---IADFGLARLIEDNEYTARQGAK 164
Query: 1001 MQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSA 1060
+ APE AL G F+ KSD W+ G + E+ Y
Sbjct: 165 FP-----------IKWTAPEAALY--GRFTI----KSDVWSFGILLTELVTKGRVPYPGM 207
Query: 1061 RNTD----YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 1100
N + E + P + L+ + + DP +RP+ E
Sbjct: 208 NNREVLEQVERGYRMPCPQDCPISLHELMLQCWKKDPEERPTFE 251
Score = 31.1 bits (70), Expect = 5.1
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 29/109 (26%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLS 1521
Q+ G+ ++ HRDL+S NIL+ + C I DFG + YT + G
Sbjct: 110 QVAAGMAYIERMNYIHRDLRSANILV--GDGLVCK---IADFGLARLIEDNEYTARQGAK 164
Query: 1522 MQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 1570
+ APE AL G F+ KSD W+ G + E+
Sbjct: 165 FP-----------IKWTAPEAALY--GRFTI----KSDVWSFGILLTEL 196
>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C epsilon.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), epsilon isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of their
regulatory domain. nPKCs are calcium-independent, but
require DAG (1,2-diacylglycerol) and phosphatidylserine
(PS) for activity. There are four nPKC isoforms, delta,
epsilon, eta, and theta. PKC-epsilon has been shown to
behave as an oncoprotein. Its overexpression contributes
to neoplastic transformation depending on the cell type.
It contributes to oncogenesis by inducing disordered cell
growth and inhibiting cell death. It also plays a role in
tumor invasion and metastasis. PKC-epsilon has also been
found to confer cardioprotection against ischemia and
reperfusion-mediated damage. Other cellular functions
include the regulation of gene expression, cell adhesion,
and cell motility.
Length = 321
Score = 35.2 bits (81), Expect = 0.25
Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 18/109 (16%)
Query: 956 LNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA 1015
L+ H +RDLK DNILLD + C + DFG K G+ ++ G
Sbjct: 112 LHRHGVIYRDLKLDNILLD--AEGHCK---LADFGMC---KEGILNGVTTT--TFCGTPD 161
Query: 1016 LMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD 1064
+APE+ S D W G + YE+ PF A N D
Sbjct: 162 YIAPEILQELEYGPSV------DWWALGVLMYEMMAGQPPF--EADNED 202
Score = 35.2 bits (81), Expect = 0.25
Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 18/109 (16%)
Query: 1477 LNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA 1536
L+ H +RDLK DNILLD + C + DFG K G+ ++ G
Sbjct: 112 LHRHGVIYRDLKLDNILLD--AEGHCK---LADFGMC---KEGILNGVTTT--TFCGTPD 161
Query: 1537 LMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD 1585
+APE+ S D W G + YE+ PF A N D
Sbjct: 162 YIAPEILQELEYGPSV------DWWALGVLMYEMMAGQPPF--EADNED 202
>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-activated protein kinase
kinase kinase kinase 3. Serine/threonine kinases (STKs),
mitogen-activated protein kinase (MAPK) kinase kinase
kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to MAP4K4/6. MAP4Ks are involved in some MAPK
signaling pathways that are important in mediating
cellular responses to extracellular signals by activating
a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAP3K to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. MAP4K3 plays a role in the
nutrient-responsive pathway of mTOR (mammalian target of
rapamycin) signaling. MAP4K3 is required in the
activation of S6 kinase by amino acids and for the
phosphorylation of the mTOR-regulated inhibitor of
eukaryotic initiation factor 4E. mTOR regulates ribosome
biogenesis and protein translation, and is frequently
deregulated in cancer.
Length = 267
Score = 35.0 bits (80), Expect = 0.26
Identities = 44/166 (26%), Positives = 67/166 (40%), Gaps = 32/166 (19%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
+ L+G+ +L+ HRD+K NILL DN +L DFG S + ++ + S
Sbjct: 114 ETLQGLYYLHSKGKMHRDIKGANILL---TDNGHVKL--ADFGVSAQITATIAKRKS--- 165
Query: 1008 IELGGNVALMAPEV-ALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 1066
G MAPEV A+ G ++ + D W G A E+ P + +
Sbjct: 166 --FIGTPYWMAPEVAAVERKGGYNQL----CDIWAVGITAIELAELQPPMFDL-----HP 214
Query: 1067 VNAL----------PQLNTNV--PEVMRRLVAKLLENDPSDRPSAE 1100
+ AL P+L + V L +P RP+AE
Sbjct: 215 MRALFLMTKSNFQPPKLKDKMKWSNSFHHFVKMALTKNPKKRPTAE 260
Score = 34.3 bits (78), Expect = 0.50
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
+ L+G+ +L+ HRD+K NILL DN +L DFG S + ++ + S
Sbjct: 114 ETLQGLYYLHSKGKMHRDIKGANILL---TDNGHVKL--ADFGVSAQITATIAKRKS--- 165
Query: 1529 IELGGNVALMAPEV-ALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFY 1578
G MAPEV A+ G ++ + D W G A E+ P +
Sbjct: 166 --FIGTPYWMAPEVAAVERKGGYNQL----CDIWAVGITAIELAELQPPMF 210
>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein Tyrosine
Kinases, Apoptosis-associated tyrosine kinases 1 and 3.
Protein Tyrosine Kinase (PTK) family;
Apoptosis-associated tyrosine kinase 1 (Aatyk1) and
Aatyk3; catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Aatyk1 and Aatyk3 are
members of the Aatyk subfamily of proteins. Aatyk3 is a
receptor kinase containing a transmembrane segment and a
long C-terminal cytoplasmic tail with a catalytic domain.
Aatyk1 has a similar domain arrangement but without the
transmembrane segment and is thus, a cytoplasmic (or
nonreceptor) kinase. The expression of Aatyk1 (also
referred simply as Aatyk) is upregulated during growth
arrest and apoptosis in myeloid cells. Aatyk1 has been
implicated in neural differentiation, and is a regulator
of the Na-K-2Cl cotransporter, a membrane protein
involved in cell proliferation and survival, epithelial
transport, and blood pressure control. The function of
Aatyk3 is still unknown.
Length = 269
Score = 34.5 bits (79), Expect = 0.35
Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 20/177 (11%)
Query: 925 DLRNYLRERCAQLSMHERILLFTQL----LEGVTHLNMHRTAHRDLKSDNILLDCSEDNT 980
DL+ YLR M ++ G+ HL+ + H DL N LL + D T
Sbjct: 81 DLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNNFIHSDLALRNCLL--TADLT 138
Query: 981 CPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSK-SDA 1039
+ I D+G S+ Y + D +L + +APE+ G V+ +K S+
Sbjct: 139 ---VKIGDYGLSHNKYK--EDYYVTPD-QLWVPLRWIAPELVDEVHGNLLVVDQTKESNV 192
Query: 1040 WTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDR 1096
W+ G +E+F + Y+ +D +V L V E +L L+ SDR
Sbjct: 193 WSLGVTIWELFELGSQPYR--HLSDEQV-----LTYTVREQQLKLPKPRLKLPLSDR 242
Score = 33.4 bits (76), Expect = 0.83
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 1446 DLRNYLRERCAQLSMHERILLFTQL----LEGVTHLNMHRTAHRDLKSDNILLDCSEDNT 1501
DL+ YLR M ++ G+ HL+ + H DL N LL + D T
Sbjct: 81 DLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNNFIHSDLALRNCLL--TADLT 138
Query: 1502 CPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSK-SDA 1560
+ I D+G S+ Y + D +L + +APE+ G V+ +K S+
Sbjct: 139 ---VKIGDYGLSHNKYK--EDYYVTPD-QLWVPLRWIAPELVDEVHGNLLVVDQTKESNV 192
Query: 1561 WTAGTVAYEIF 1571
W+ G +E+F
Sbjct: 193 WSLGVTIWELF 203
>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein Serine/Threonine
Kinase, Rho-associated coiled-coil containing protein
kinase 2. Serine/Threonine Kinases (STKs), ROCK
subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. ROCK contains an
N-terminal extension, a catalytic kinase domain, and a
C-terminal extension, which contains a coiled-coil region
encompassing a Rho-binding domain (RBD) and a pleckstrin
homology (PH) domain. ROCK is auto-inhibited by the RBD
and PH domain interacting with the catalytic domain, and
is activated via interaction with Rho GTPases. ROCK2 was
the first identified target of activated RhoA, and was
found to play a role in stress fiber and focal adhesion
formation. It is prominently expressed in the brain,
heart, and skeletal muscles. It is implicated in vascular
and neurological disorders, such as hypertension and
vasospasm of the coronary and cerebral arteries. ROCK2 is
also activated by caspase-2 cleavage, resulting in
thrombin-induced microparticle generation in response to
cell activation. Mice deficient in ROCK2 show
intrauterine growth retardation and embryonic lethality
because of placental dysfunction.
Length = 370
Score = 35.0 bits (80), Expect = 0.36
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 963 HRDLKSDNILLDCSEDNTCPQLVITDFGSSY-TNKSGLSMQYSSADIELGGNVALMAPEV 1021
HRD+K DN+LLD L + DFG+ +++G+ ++ G ++PEV
Sbjct: 165 HRDVKPDNMLLD-----KHGHLKLADFGTCMKMDETGMVRCDTAV-----GTPDYISPEV 214
Query: 1022 ALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFY 1057
L + G + + D W+ G +E+ D PFY
Sbjct: 215 -LKSQGGDGYYG-RECDWWSVGVFLFEMLVGDTPFY 248
Score = 35.0 bits (80), Expect = 0.36
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 1484 HRDLKSDNILLDCSEDNTCPQLVITDFGSSY-TNKSGLSMQYSSADIELGGNVALMAPEV 1542
HRD+K DN+LLD L + DFG+ +++G+ ++ G ++PEV
Sbjct: 165 HRDVKPDNMLLD-----KHGHLKLADFGTCMKMDETGMVRCDTAV-----GTPDYISPEV 214
Query: 1543 ALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFY 1578
L + G + + D W+ G +E+ D PFY
Sbjct: 215 -LKSQGGDGYYG-RECDWWSVGVFLFEMLVGDTPFY 248
>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein Serine/Threonine
Kinase, Large Tumor Suppressor. Serine/Threonine Kinases
(STKs), Large Tumor Suppressor (LATS) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The LATS subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. LATS was
originally identified in Drosophila using a screen for
genes whose inactivation led to overproliferation of
cells. In tetrapods, there are two LATS isoforms, LATS1
and LATS2. Inactivation of LATS1 in mice results in the
development of various tumors, including sarcomas and
ovarian cancer. LATS functions as a tumor suppressor and
is implicated in cell cycle regulation.
Length = 376
Score = 34.8 bits (80), Expect = 0.40
Identities = 50/188 (26%), Positives = 69/188 (36%), Gaps = 70/188 (37%)
Query: 910 GRNMSLFILMKKYNTDL-RNYLRE-RCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLK 967
G MSL I + + DL R Y+ E CA S+H+ + HRD+K
Sbjct: 86 GDMMSLLIRLGIFEEDLARFYIAELTCAIESVHKMGFI-----------------HRDIK 128
Query: 968 SDNILLDCSEDNTCPQLVITDFG----------SSYTNKSGLSMQYS------SADIE-- 1009
DNIL+D D + +TDFG S Y K Q S ++I+
Sbjct: 129 PDNILID--RDG---HIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRC 183
Query: 1010 --------------------LGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYE 1048
L G +APEV L T Y++ D W+ G + YE
Sbjct: 184 RLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRT-------GYTQLCDWWSVGVILYE 236
Query: 1049 IFGHDNPF 1056
+ PF
Sbjct: 237 MLVGQPPF 244
Score = 34.8 bits (80), Expect = 0.40
Identities = 50/188 (26%), Positives = 69/188 (36%), Gaps = 70/188 (37%)
Query: 1431 GRNMSLFILMKKYNTDL-RNYLRE-RCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLK 1488
G MSL I + + DL R Y+ E CA S+H+ + HRD+K
Sbjct: 86 GDMMSLLIRLGIFEEDLARFYIAELTCAIESVHKMGFI-----------------HRDIK 128
Query: 1489 SDNILLDCSEDNTCPQLVITDFG----------SSYTNKSGLSMQYS------SADIE-- 1530
DNIL+D D + +TDFG S Y K Q S ++I+
Sbjct: 129 PDNILID--RDG---HIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRC 183
Query: 1531 --------------------LGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYE 1569
L G +APEV L T Y++ D W+ G + YE
Sbjct: 184 RLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRT-------GYTQLCDWWSVGVILYE 236
Query: 1570 IFGHDNPF 1577
+ PF
Sbjct: 237 MLVGQPPF 244
>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C zeta.
Serine/Threonine Kinases (STKs), Atypical Protein Kinase
C (aPKC) subfamily, zeta isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The aPKC subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PKCs are classified into three
groups (classical, atypical, and novel) depending on
their mode of activation and the structural
characteristics of their regulatory domain. aPKCs only
require phosphatidylserine (PS) for activation. There are
two aPKC isoforms, zeta and iota. PKC-zeta plays a
critical role in activating the glucose transport
response. It is activated by glucose, insulin, and
exercise through diverse pathways. PKC-zeta also plays a
central role in maintaining cell polarity in yeast and
mammalian cells. In addition, it affects actin remodeling
in muscle cells.
Length = 327
Score = 34.6 bits (79), Expect = 0.43
Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 34/148 (22%)
Query: 1448 RNYLRERCAQLS-MHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 1506
R Y E C L+ +HER +++ RDLK DN+LLD +
Sbjct: 99 RFYAAEICIALNFLHERGIIY-----------------RDLKLDNVLLDADG-----HIK 136
Query: 1507 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTV 1566
+TD+G K GL +++ G +APE+ FS D W G +
Sbjct: 137 LTDYGMC---KEGLGPGDTTS--TFCGTPNYIAPEILRGEEYGFSV------DWWALGVL 185
Query: 1567 AYEIFGHDNPFYQSARNTDYWHRKWLWQ 1594
+E+ +PF N D +L+Q
Sbjct: 186 MFEMMAGRSPFDIITDNPDMNTEDYLFQ 213
Score = 32.3 bits (73), Expect = 2.0
Identities = 43/180 (23%), Positives = 68/180 (37%), Gaps = 43/180 (23%)
Query: 927 RNYLRERCAQLS-MHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 985
R Y E C L+ +HER +++ RDLK DN+LLD +
Sbjct: 99 RFYAAEICIALNFLHERGIIY-----------------RDLKLDNVLLDADG-----HIK 136
Query: 986 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTV 1045
+TD+G K GL +++ G +APE+ FS D W G +
Sbjct: 137 LTDYGMC---KEGLGPGDTTS--TFCGTPNYIAPEILRGEEYGFSV------DWWALGVL 185
Query: 1046 AYEIFGHDNPFYQSARNTD-----YEVNALPQLNTNVPEVMR----RLVAKLLENDPSDR 1096
+E+ +PF N D Y + + +P + ++ L DP +R
Sbjct: 186 MFEMMAGRSPFDIITDNPDMNTEDYLFQVILEKPIRIPRFLSVKASHVLKGFLNKDPKER 245
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional.
Length = 445
Score = 34.8 bits (80), Expect = 0.45
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 1330 NAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL 1389
N +Y+ FR LK+ + +H + MS LR P +LN D+ +V NL
Sbjct: 204 NEALYDICFR----TLKLT-TPTYGDLNHLVSAVMSGVTCCLRFPGQLNSDLRKLAV-NL 257
Query: 1390 PPHPNVVVMHFAFTDFVPSIPDSSLIYPS 1418
P P +HF F P S Y
Sbjct: 258 VPFPR---LHFFMMGFAPLTSRGSQQYRG 283
Score = 33.6 bits (77), Expect = 0.93
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 124 NAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL 183
N +Y+ FR LK+ + +H + MS LR P +LN D+ +V NL
Sbjct: 204 NEALYDICFR----TLKLT-TPTYGDLNHLVSAVMSGVTCCLRFPGQLNSDLRKLAV-NL 257
Query: 184 PPHPNVVVMHFAFTDFVPSIPDSSLIYP 211
P P +HF F P S Y
Sbjct: 258 VPFPR---LHFFMMGFAPLTSRGSQQYR 282
Score = 33.6 bits (77), Expect = 0.93
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 565 NAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL 624
N +Y+ FR LK+ + +H + MS LR P +LN D+ +V NL
Sbjct: 204 NEALYDICFR----TLKLT-TPTYGDLNHLVSAVMSGVTCCLRFPGQLNSDLRKLAV-NL 257
Query: 625 PPHPNVVVMHFAFTDFVPSIPDSSLIYP 652
P P +HF F P S Y
Sbjct: 258 VPFPR---LHFFMMGFAPLTSRGSQQYR 282
>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine
Kinase, HER3. Protein Tyrosine Kinase (PTK) family; HER3
(ErbB3); pseudokinase domain. The PTKc (catalytic domain)
family to which this subfamily belongs, is part of a
larger superfamily that includes the catalytic domains of
other kinases such as protein serine/threonine kinases,
RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
HER3 is a member of the EGFR (HER, ErbB) subfamily of
proteins, which are receptor tyr kinases (RTKs)
containing an extracellular EGF-related ligand-binding
region, a transmembrane helix, and a cytoplasmic region
with a tyr kinase domain and a regulatory C-terminal
tail. Unlike other tyr kinases, phosphorylation of the
activation loop of EGFR proteins is not critical to their
activation. Instead, they are activated by ligand-induced
dimerization, leading to the phosphorylation of tyr
residues in the C-terminal tail, which serve as binding
sites for downstream signaling molecules. HER3 binds the
neuregulin ligands, NRG1 and NRG2. HER3 contains an
impaired tyr kinase domain and relies on its
heterodimerization partners for activity following ligand
binding. The HER2-HER3 heterodimer constitutes a high
affinity co-receptor capable of potent mitogenic
signaling. HER3 participates in a signaling pathway
involved in the proliferation, survival, adhesion, and
motility of tumor cells.
Length = 279
Score = 34.5 bits (79), Expect = 0.45
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 22/140 (15%)
Query: 926 LRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 985
L +++R+ L + Q+ +G+ +L HR HR+L + NILL +
Sbjct: 95 LLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLKSDS-----IVQ 149
Query: 986 ITDFGSS---YTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWT 1041
I DFG + Y + YS E + MA E L F Y+ +SD W+
Sbjct: 150 IADFGVADLLYPDDKKYF--YS----EHKTPIKWMALESIL-------FGRYTHQSDVWS 196
Query: 1042 AGTVAYEIFGHDNPFYQSAR 1061
G +E+ + Y R
Sbjct: 197 YGVTVWEMMSYGAEPYAGMR 216
Score = 34.5 bits (79), Expect = 0.45
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 22/140 (15%)
Query: 1447 LRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 1506
L +++R+ L + Q+ +G+ +L HR HR+L + NILL +
Sbjct: 95 LLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLKSDS-----IVQ 149
Query: 1507 ITDFGSS---YTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWT 1562
I DFG + Y + YS E + MA E L F Y+ +SD W+
Sbjct: 150 IADFGVADLLYPDDKKYF--YS----EHKTPIKWMALESIL-------FGRYTHQSDVWS 196
Query: 1563 AGTVAYEIFGHDNPFYQSAR 1582
G +E+ + Y R
Sbjct: 197 YGVTVWEMMSYGAEPYAGMR 216
>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related
kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related
(NDR) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The NDR subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation at
two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. NDR kinases
regulate mitosis, cell growth, embryonic development, and
neurological processes. They are also required for proper
centrosome duplication. Higher eukaryotes contain two NDR
isoforms, NDR1 and NDR2. This subfamily also contains
fungal NDR-like kinases.
Length = 364
Score = 34.3 bits (79), Expect = 0.50
Identities = 42/182 (23%), Positives = 62/182 (34%), Gaps = 61/182 (33%)
Query: 910 GRNMSLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSD 969
G M+L + K +T E + + E IL ++ + L HRD+K D
Sbjct: 86 GDMMTLLM---KKDT-----FTEEETRFYIAETILA----IDSIHKLGY---IHRDIKPD 130
Query: 970 NILLDCSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSADIELGGNVAL------------ 1016
N+LLD + ++DFG + KS + Y L N
Sbjct: 131 NLLLDAKG-----HIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKA 185
Query: 1017 --------------------MAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNP 1055
+APEV L T Y+K D W+ G + YE+ P
Sbjct: 186 ETWKRNRRALAYSTVGTPDYIAPEVFLQT-------GYNKECDWWSLGVIMYEMLVGYPP 238
Query: 1056 FY 1057
F
Sbjct: 239 FC 240
Score = 34.3 bits (79), Expect = 0.50
Identities = 42/182 (23%), Positives = 62/182 (34%), Gaps = 61/182 (33%)
Query: 1431 GRNMSLFILMKKYNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSD 1490
G M+L + K +T E + + E IL ++ + L HRD+K D
Sbjct: 86 GDMMTLLM---KKDT-----FTEEETRFYIAETILA----IDSIHKLGY---IHRDIKPD 130
Query: 1491 NILLDCSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSADIELGGNVAL------------ 1537
N+LLD + ++DFG + KS + Y L N
Sbjct: 131 NLLLDAKG-----HIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKA 185
Query: 1538 --------------------MAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNP 1576
+APEV L T Y+K D W+ G + YE+ P
Sbjct: 186 ETWKRNRRALAYSTVGTPDYIAPEVFLQT-------GYNKECDWWSLGVIMYEMLVGYPP 238
Query: 1577 FY 1578
F
Sbjct: 239 FC 240
>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase,
Tyro3. Protein Tyrosine Kinase (PTK) family; Tyro3;
catalytic (c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Tyro3 (or Sky) is a member of the Axl subfamily, which is
composed of receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with two
immunoglobulin-like domains followed by two fibronectin
type III repeats, a transmembrane segment, and an
intracellular catalytic domain. Binding to their ligands,
Gas6 and protein S, leads to receptor dimerization,
autophosphorylation, activation, and intracellular
signaling. Tyro3 is predominantly expressed in the
central nervous system and the brain, and functions as a
neurotrophic factor. It is also expressed in osteoclasts
and has a role in bone resorption.
Length = 273
Score = 34.1 bits (78), Expect = 0.54
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 20/152 (13%)
Query: 952 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG 1011
G+ +L+ HRDL + N +L+ E+ T + + DF GLS + S D
Sbjct: 125 GMEYLSSKNFIHRDLAARNCMLN--ENMT---VCVADF--------GLSKKIYSGDYYRQ 171
Query: 1012 GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-YEV--- 1067
G + + P LA L V + SD W G +EI Y N++ Y
Sbjct: 172 GCASKL-PVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVENSEIYNYLIK 230
Query: 1068 -NALPQLNTNVPEVMRRLVAKLLENDPSDRPS 1098
N L Q + E + L+ + +P RPS
Sbjct: 231 GNRLKQ-PPDCLEDVYELMCQCWSPEPKCRPS 261
Score = 31.8 bits (72), Expect = 3.0
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 14/115 (12%)
Query: 1473 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG 1532
G+ +L+ HRDL + N +L+ E+ T + + DF GLS + S D
Sbjct: 125 GMEYLSSKNFIHRDLAARNCMLN--ENMT---VCVADF--------GLSKKIYSGDYYRQ 171
Query: 1533 GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYW 1587
G + + P LA L V + SD W G +EI Y N++ +
Sbjct: 172 GCASKL-PVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVENSEIY 225
>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase,
Kit. Protein Tyrosine Kinase (PTK) family; Kit (or
c-Kit); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Kit is a member of the
Platelet Derived Growth Factor Receptor (PDGFR) subfamily
of proteins, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
five immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of Kit to its ligand, the stem-cell factor (SCF),
leads to receptor dimerization, trans phosphorylation and
activation, and intracellular signaling. Kit is important
in the development of melanocytes, germ cells, mast
cells, hematopoietic stem cells, the interstitial cells
of Cajal, and the pacemaker cells of the GI tract. Kit
signaling is involved in major cellular functions
including cell survival, proliferation, differentiation,
adhesion, and chemotaxis. Mutations in Kit, which result
in constitutive ligand-independent activation, are found
in human cancers such as gastrointestinal stromal tumor
(GIST) and testicular germ cell tumor (TGCT). The
aberrant expression of Kit and/or SCF is associated with
other tumor types such as systemic mastocytosis and
cancers of the breast, neurons, lung, prostate, colon,
and rectum. Although the structure of the human Kit
catalytic domain is known, it is excluded from this
specific alignment model because it contains a deletion
in its sequence.
Length = 375
Score = 34.1 bits (78), Expect = 0.60
Identities = 36/117 (30%), Positives = 51/117 (43%), Gaps = 27/117 (23%)
Query: 941 ERILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG--SSYTNKS 997
E +L F+ Q+ +G++ L HRDL + NILL I DFG N S
Sbjct: 214 EDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLTHGRITK-----ICDFGLARDIRNDS 268
Query: 998 GLSMQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 1050
++ GN L MAPE +F+ V +SD W+ G + +EIF
Sbjct: 269 NYVVK---------GNARLPVKWMAPE------SIFNCVYTFESDVWSYGILLWEIF 310
Score = 34.1 bits (78), Expect = 0.60
Identities = 36/117 (30%), Positives = 51/117 (43%), Gaps = 27/117 (23%)
Query: 1462 ERILLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG--SSYTNKS 1518
E +L F+ Q+ +G++ L HRDL + NILL I DFG N S
Sbjct: 214 EDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLTHGRITK-----ICDFGLARDIRNDS 268
Query: 1519 GLSMQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 1571
++ GN L MAPE +F+ V +SD W+ G + +EIF
Sbjct: 269 NYVVK---------GNARLPVKWMAPE------SIFNCVYTFESDVWSYGILLWEIF 310
>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine
Kinase, HER2. Protein Tyrosine Kinase (PTK) family;
HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER2 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. HER2 does not bind to any known EGFR
subfamily ligands, but contributes to the kinase
activity of all possible heterodimers. It acts as the
preferred partner with other ligand-bound EGFR proteins
and functions as a signal amplifier, with the HER2-HER3
heterodimer being the most potent pair in mitogenic
signaling. HER2 plays an important role in cell
development, proliferation, survival and motility.
Overexpression of HER2 results in its activation and
downstream signaling, even in the absence of ligand.
HER2 overexpression, mainly due to gene amplification,
has been shown in a variety of human cancers. Its role
in breast cancer is especially well-documented. HER2 is
up-regulated in about 25% of breast tumors and is
associated with increases in tumor aggressiveness,
recurrence and mortality. HER2 is a target for
monoclonal antibodies and small molecule inhibitors,
which are being developed as treatments for cancer. The
first humanized antibody approved for clinical use is
Trastuzumab (Herceptin), which is being used in
combination with other therapies to improve the survival
rates of patients with HER2-overexpressing breast
cancer.
Length = 279
Score = 33.8 bits (77), Expect = 0.74
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 926 LRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 985
L +Y+RE ++ + + Q+ +G+++L R HRDL + N+L+ +
Sbjct: 95 LLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLVKSPN-----HVK 149
Query: 986 ITDFG 990
ITDFG
Sbjct: 150 ITDFG 154
Score = 33.8 bits (77), Expect = 0.74
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 1447 LRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 1506
L +Y+RE ++ + + Q+ +G+++L R HRDL + N+L+ +
Sbjct: 95 LLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLVKSPN-----HVK 149
Query: 1507 ITDFG 1511
ITDFG
Sbjct: 150 ITDFG 154
>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional.
Length = 440
Score = 33.9 bits (77), Expect = 0.76
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 20/139 (14%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
QL + +++ HRDLK N+L+D + L + DFGS+ K+ L+ Q S +
Sbjct: 178 QLCRALAYIHSKFICHRDLKPQNLLIDPNTHT----LKLCDFGSA---KNLLAGQRSVSY 230
Query: 1008 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYE-IFGHDNPFYQSARNTDY 1065
I + APE+ L NY+ D W+ G + E I G+ P + + D
Sbjct: 231 I---CSRFYRAPELMLGA------TNYTTHIDLWSLGCIIAEMILGY--PIFSGQSSVDQ 279
Query: 1066 EVNALPQLNTNVPEVMRRL 1084
V + L T + ++ +
Sbjct: 280 LVRIIQVLGTPTEDQLKEM 298
Score = 30.4 bits (68), Expect = 9.3
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 20/119 (16%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
QL + +++ HRDLK N+L+D + L + DFGS+ K+ L+ Q S +
Sbjct: 178 QLCRALAYIHSKFICHRDLKPQNLLIDPNTHT----LKLCDFGSA---KNLLAGQRSVSY 230
Query: 1529 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYE-IFGHDNPFYQSARNTD 1585
I + APE+ L NY+ D W+ G + E I G+ P + + D
Sbjct: 231 I---CSRFYRAPELMLGA------TNYTTHIDLWSLGCIIAEMILGY--PIFSGQSSVD 278
>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), cAMP-dependent protein kinase (PKA) subfamily,
PRKX-like kinases, catalytic (c) subunit. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PKA
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include human PRKX (X
chromosome-encoded protein kinase), Drosophila DC2, and
similar proteins. PRKX is present in many tissues
including fetal and adult brain, kidney, and lung. The
PRKX gene is located in the Xp22.3 subregion and has a
homolog called PRKY on the Y chromosome. An abnormal
interchange between PRKX aand PRKY leads to the sex
reversal disorder of XX males and XY females. PRKX is
implicated in granulocyte/macrophage lineage
differentiation, renal cell epithelial migration, and
tubular morphogenesis in the developing kidney.
Length = 291
Score = 33.6 bits (77), Expect = 0.84
Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 38/182 (20%)
Query: 925 DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 984
+L +YLR + S + ++++ + +L+ +RDLK +NILLD E + +
Sbjct: 87 ELFSYLRNS-GRFSNSTGLFYASEIVCALEYLHSKEIVYRDLKPENILLD-KEGH----I 140
Query: 985 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGT 1044
+TDF G + + L G +APEV + + G V D W G
Sbjct: 141 KLTDF--------GFAKKLRDRTWTLCGTPEYLAPEV-IQSKGHNKAV-----DWWALGI 186
Query: 1045 VAYEI------FGHDNPF--YQS--ARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPS 1094
+ YE+ F DNPF Y+ A ++ L+ + L+ KLL D +
Sbjct: 187 LIYEMLVGYPPFFDDNPFGIYEKILAGKLEFP----RHLDLYA----KDLIKKLLVVDRT 238
Query: 1095 DR 1096
R
Sbjct: 239 RR 240
Score = 32.0 bits (73), Expect = 2.9
Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 26/138 (18%)
Query: 1446 DLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 1505
+L +YLR + S + ++++ + +L+ +RDLK +NILLD E + +
Sbjct: 87 ELFSYLRNS-GRFSNSTGLFYASEIVCALEYLHSKEIVYRDLKPENILLD-KEGH----I 140
Query: 1506 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGT 1565
+TDF G + + L G +APEV + + G V D W G
Sbjct: 141 KLTDF--------GFAKKLRDRTWTLCGTPEYLAPEV-IQSKGHNKAV-----DWWALGI 186
Query: 1566 VAYEI------FGHDNPF 1577
+ YE+ F DNPF
Sbjct: 187 LIYEMLVGYPPFFDDNPF 204
>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain
Receptor-like Protein Tyrosine Kinases. Protein Tyrosine
Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like
proteins; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. DDR-like proteins are
members of the DDR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular discoidin
homology domain, a transmembrane segment, an extended
juxtamembrane region, and an intracellular catalytic
domain. The binding of the ligand, collagen, to DDRs
results in a slow but sustained receptor activation. DDRs
regulate cell adhesion, proliferation, and extracellular
matrix remodeling. They have been linked to a variety of
human cancers including breast, colon, ovarian, brain,
and lung. There is no evidence showing that DDRs act as
transforming oncogenes. They are more likely to play a
role in the regulation of tumor growth and metastasis.
Length = 295
Score = 33.0 bits (75), Expect = 1.4
Identities = 36/143 (25%), Positives = 53/143 (37%), Gaps = 33/143 (23%)
Query: 923 NTDLRNYLRER-----------CAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNI 971
N DL +L +R +S+ + + Q+ G+ +L HRDL + N
Sbjct: 101 NGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLNFVHRDLATRNC 160
Query: 972 LLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL----MAPEVALATPG 1027
L+ + I DFG S YS + G L MA E L G
Sbjct: 161 LVGNHY-----TIKIADFGMSRN-------LYSGDYYRIQGRAVLPIRWMAWESILL--G 206
Query: 1028 LFSFVNYSKSDAWTAGTVAYEIF 1050
F+ + SD W G +E+F
Sbjct: 207 KFT----TASDVWAFGVTLWEMF 225
Score = 33.0 bits (75), Expect = 1.4
Identities = 36/143 (25%), Positives = 53/143 (37%), Gaps = 33/143 (23%)
Query: 1444 NTDLRNYLRER-----------CAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNI 1492
N DL +L +R +S+ + + Q+ G+ +L HRDL + N
Sbjct: 101 NGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLNFVHRDLATRNC 160
Query: 1493 LLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL----MAPEVALATPG 1548
L+ + I DFG S YS + G L MA E L G
Sbjct: 161 LVGNHY-----TIKIADFGMSRN-------LYSGDYYRIQGRAVLPIRWMAWESILL--G 206
Query: 1549 LFSFVNYSKSDAWTAGTVAYEIF 1571
F+ + SD W G +E+F
Sbjct: 207 KFT----TASDVWAFGVTLWEMF 225
>gnl|CDD|225023 COG2112, COG2112, Predicted Ser/Thr protein kinase [Signal
transduction mechanisms].
Length = 201
Score = 32.4 bits (74), Expect = 1.5
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 113 IQIGKFIAKGTNAVVYEATFRGVEYALK 140
+++ K +AKGT +VVY +RG E ALK
Sbjct: 24 LRVEKELAKGTTSVVYLGEWRGGEVALK 51
Score = 32.4 bits (74), Expect = 1.5
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 554 IQIGKFIAKGTNAVVYEATFRGVEYALK 581
+++ K +AKGT +VVY +RG E ALK
Sbjct: 24 LRVEKELAKGTTSVVYLGEWRGGEVALK 51
Score = 32.4 bits (74), Expect = 1.5
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 1319 IQIGKFIAKGTNAVVYEATFRGVEYALK 1346
+++ K +AKGT +VVY +RG E ALK
Sbjct: 24 LRVEKELAKGTTSVVYLGEWRGGEVALK 51
>gnl|CDD|223069 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional.
Length = 267
Score = 32.5 bits (75), Expect = 1.5
Identities = 41/195 (21%), Positives = 68/195 (34%), Gaps = 65/195 (33%)
Query: 871 HPNVVVMHFAFT---------DFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKK 921
+PN + ++++ T D++ D LF L+KK
Sbjct: 68 NPNFIKLYYSVTTLKGHVLIMDYIKD-GD------------------------LFDLLKK 102
Query: 922 YNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTC 981
L E E + QL+E + L+ H H D+K +N+L D ++D
Sbjct: 103 -----EGKLSE-------AEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKD--- 147
Query: 982 PQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWT 1041
++ + D+G S D G + +PE SF D W
Sbjct: 148 -RIYLCDYGLCKIIG-----TPSCYD----GTLDYFSPEKIKGHNYDVSF------DWWA 191
Query: 1042 AGTVAYEIFGHDNPF 1056
G + YE+ +PF
Sbjct: 192 VGVLTYELLTGKHPF 206
Score = 32.5 bits (75), Expect = 1.5
Identities = 41/195 (21%), Positives = 68/195 (34%), Gaps = 65/195 (33%)
Query: 1392 HPNVVVMHFAFT---------DFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKK 1442
+PN + ++++ T D++ D LF L+KK
Sbjct: 68 NPNFIKLYYSVTTLKGHVLIMDYIKD-GD------------------------LFDLLKK 102
Query: 1443 YNTDLRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTC 1502
L E E + QL+E + L+ H H D+K +N+L D ++D
Sbjct: 103 -----EGKLSE-------AEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKD--- 147
Query: 1503 PQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWT 1562
++ + D+G S D G + +PE SF D W
Sbjct: 148 -RIYLCDYGLCKIIG-----TPSCYD----GTLDYFSPEKIKGHNYDVSF------DWWA 191
Query: 1563 AGTVAYEIFGHDNPF 1577
G + YE+ +PF
Sbjct: 192 VGVLTYELLTGKHPF 206
>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine
Kinase, Colony-Stimulating Factor-1 Receptor. Protein
Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1
Receptor (CSF-1R); catalytic (c) domain. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. CSF-1R,
also called c-Fms, is a member of the Platelet Derived
Growth Factor Receptor (PDGFR) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment, and
an intracellular catalytic domain. The binding of CSF-1R
to its ligand, CSF-1, leads to receptor dimerization,
trans phosphorylation and activation, and intracellular
signaling. CSF-1R signaling is critical in the regulation
of macrophages and osteoclasts. It leads to increases in
gene transcription and protein translation, and induces
cytoskeletal remodeling. CSF-1R signaling leads to a
variety of cellular responses including survival,
proliferation, and differentiation of target cells. It
plays an important role in innate immunity, tissue
development and function, and the pathogenesis of some
diseases including atherosclerosis and cancer. CSF-1R
signaling is also implicated in mammary gland development
during pregnancy and lactation. Aberrant CSF-1/CSF-1R
expression correlates with tumor cell invasiveness, poor
clinical prognosis, and bone metastasis in breast cancer.
Although the structure of the human CSF-1R catalytic
domain is known, it is excluded from this specific
alignment model because it contains a deletion in its
sequence.
Length = 374
Score = 32.9 bits (75), Expect = 1.6
Identities = 70/321 (21%), Positives = 115/321 (35%), Gaps = 116/321 (36%)
Query: 1317 DDIQIGKFIAKGTNAVVYEATFRG-------VEYALKMMFNYSAASNSHAILKAMSKELL 1369
D++Q GK + G V EAT G + A+KM+ +++H + E
Sbjct: 38 DNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKML-----KASAH------TDERE 86
Query: 1370 PLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFT------------------DFVPSIPD 1411
L L++ + +L H N+V + A T +F+ +
Sbjct: 87 ALMSELKI--------LSHLGQHKNIVNLLGACTHGGPVLVITEYCCYGDLLNFLRKKAE 138
Query: 1412 SSLIYPSALPARLNPTGGYGRNMSLFILMKKY--------NTDLRNYLRERCAQ------ 1457
+ L + ALP + Y +N++L KKY + Y+ R
Sbjct: 139 TFLNFVMALPEISETSSDY-KNITL---EKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQS 194
Query: 1458 --------------LSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 1503
L + + + +Q+ +G+ L HRD+ + N+LL T
Sbjct: 195 SDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKNCIHRDVAARNVLL------TDG 248
Query: 1504 QLV-ITDFG--------SSYTNKSGLSMQYSSADIELGGNVAL----MAPEVALATPGLF 1550
++ I DFG S+Y K GN L MAPE +F
Sbjct: 249 RVAKICDFGLARDIMNDSNYVVK---------------GNARLPVKWMAPE------SIF 287
Query: 1551 SFVNYSKSDAWTAGTVAYEIF 1571
V +SD W+ G + +EIF
Sbjct: 288 DCVYTVQSDVWSYGILLWEIF 308
Score = 31.7 bits (72), Expect = 3.3
Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 40/127 (31%)
Query: 937 LSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV-ITDFG----- 990
L + + + +Q+ +G+ L HRD+ + N+LL T ++ I DFG
Sbjct: 209 LDLDDLLRFSSQVAQGMDFLASKNCIHRDVAARNVLL------TDGRVAKICDFGLARDI 262
Query: 991 ---SSYTNKSGLSMQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAG 1043
S+Y K GN L MAPE +F V +SD W+ G
Sbjct: 263 MNDSNYVVK---------------GNARLPVKWMAPE------SIFDCVYTVQSDVWSYG 301
Query: 1044 TVAYEIF 1050
+ +EIF
Sbjct: 302 ILLWEIF 308
>gnl|CDD|129260 TIGR00156, TIGR00156, TIGR00156 family protein. As of the last
revision, this family consists only of two proteins from
Escherichia coli and one from the related species
Haemophilus influenzae [Hypothetical proteins,
Conserved].
Length = 126
Score = 31.0 bits (70), Expect = 1.8
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 430 IEFLTQPPATSSGQGRLSAP-AGHPIQTYFQ--NARKLFVNSLLNRVTNSMASDLRRKTI 486
L P A + QG LSAP H I+ FQ +A+K+ V+ + + + LR I
Sbjct: 9 ASALVMPYALADDQGGLSAPPPPHAIEGGFQGTDAKKMTVDFAKSMHDGASVT-LRGNII 67
Query: 487 QQL-----LYKDNS 495
+ +++D S
Sbjct: 68 SHIGDDRYVFRDKS 81
>gnl|CDD|188121 TIGR01250, pro_imino_pep_2, proline-specific peptidase, Bacillus
coagulans-type subfamily. This model describes a
subfamily of the alpha/beta fold family of hydrolases.
Characterized members include prolinases (Pro-Xaa
dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC
3.4.11.5), and a leucyl aminopeptidase.
Length = 289
Score = 32.4 bits (74), Expect = 1.8
Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 14/88 (15%)
Query: 1574 DNPFYQSARNTDYWHRKWL--WQHLVYSHSSTTPSTVAYEIFGHDNPFYQSARNTDYEVN 1631
DNP YQ A Y H H + +T Y I N F + D+++
Sbjct: 166 DNPEYQEAVEVFYHHLLCRLRKWPEALKHLKSGGNTNVYNIMQGPNEFTITGNLKDWDIT 225
Query: 1632 ------ALPQL------NTNVPEVMRRL 1647
+P L +T PE R +
Sbjct: 226 DKLSEIKVPTLLTVGEFDTMTPEAAREM 253
>gnl|CDD|221920 pfam13095, FTA2, Kinetochore Sim4 complex subunit FTA2. Fission
yeast has three kinetochore protein complexes. Two
complexes, Sim4 and Ndc80-MIND-Spc7 (NMS), are
constitutive components, whereas the third complex,
DASH, is transiently associated with kinetochores only
in mitosis and is required for precise chromosome
segregation. The Sim4 complex functions as a loading
dock for the DASH complex. Sim4 consists of a number of
different proteins including Ftas 1-7 and Dad1. The
equivalent higher eukaryotic protein is CENP-P. The
centromere, which is the basic element of chromosome
inheritance, is epigenetically determined in mammals.
CENP-A, the centromere-specific histone H3 variant,
assembles an array of nucleosomes and it is this that
seems to be the prime candidate for specifying
centromere identity. CENP-A nucleosomes directly recruit
a proximal CENP-A nucleosome associated complex (NAC)
comprised of CENP-M, CENP-N and CENP-T, CENP-U(50),
CENP-C and CENP-H. Assembly of the CENP-A NAC at
centromeres is dependent on CENP-M, CENP-N and CENP-T.
Additionally, there are seven other subunits which make
up the CENP-A-nucleosome distal (CAD) centromere,
CENP-K, CENP-L, CENP-O, CENP-P, CENP-Q, CENP-R and
CENP-S, also assembling on the CENP-A NAC.
Length = 199
Score = 31.8 bits (72), Expect = 2.1
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 107 DVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYS 146
IQ +F+ GT VY RG YALK+ +
Sbjct: 32 IHHTSSIQFIRFLGHGTEGKVYRVKIRGRTYALKLTKFWP 71
Score = 31.8 bits (72), Expect = 2.1
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 548 DVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYS 587
IQ +F+ GT VY RG YALK+ +
Sbjct: 32 IHHTSSIQFIRFLGHGTEGKVYRVKIRGRTYALKLTKFWP 71
Score = 31.8 bits (72), Expect = 2.1
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 1313 DVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYS 1352
IQ +F+ GT VY RG YALK+ +
Sbjct: 32 IHHTSSIQFIRFLGHGTEGKVYRVKIRGRTYALKLTKFWP 71
>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the Protein
Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase
(PTK) family; Janus kinase (Jak) subfamily; pseudokinase
domain (repeat1). The Jak subfamily is composed of Jak1,
Jak2, Jak3, TYK2, and similar proteins. The PTKc
(catalytic domain) family to which this subfamily
belongs, is part of a larger superfamily that includes
the catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Jak
subfamily proteins are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal FERM domain, followed by
a Src homology 2 (SH2) domain, a pseudokinase domain, and
a C-terminal catalytic tyr kinase domain. The
pseudokinase domain shows similarity to tyr kinases but
lacks crucial residues for catalytic activity and ATP
binding. It modulates the kinase activity of the
C-terminal catalytic domain. Most Jaks are expressed in a
wide variety of tissues, except for Jak3, which is
expressed only in hematopoietic cells. Jaks are crucial
for cytokine receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs). Jaks
are also involved in regulating the surface expression of
some cytokine receptors. The Jak-STAT pathway is involved
in many biological processes including hematopoiesis,
immunoregulation, host defense, fertility, lactation,
growth, and embryogenesis.
Length = 259
Score = 32.1 bits (73), Expect = 2.1
Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 15/127 (11%)
Query: 926 LRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 985
L +L +S+H ++ + QL + +L + H ++ NIL+ N
Sbjct: 87 LDVFLHREKNNVSLHWKLDVAKQLASALHYLEDKKLVHGNVCGKNILVARYGLNEGYVPF 146
Query: 986 I--TDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAG 1043
I +D G T LS + I +APE + + +D W+ G
Sbjct: 147 IKLSDPGIPIT---VLSREERVERI------PWIAPEC---IRNGQASLT-IAADKWSFG 193
Query: 1044 TVAYEIF 1050
T EI
Sbjct: 194 TTLLEIC 200
Score = 32.1 bits (73), Expect = 2.1
Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 15/127 (11%)
Query: 1447 LRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 1506
L +L +S+H ++ + QL + +L + H ++ NIL+ N
Sbjct: 87 LDVFLHREKNNVSLHWKLDVAKQLASALHYLEDKKLVHGNVCGKNILVARYGLNEGYVPF 146
Query: 1507 I--TDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAG 1564
I +D G T LS + I +APE + + +D W+ G
Sbjct: 147 IKLSDPGIPIT---VLSREERVERI------PWIAPEC---IRNGQASLT-IAADKWSFG 193
Query: 1565 TVAYEIF 1571
T EI
Sbjct: 194 TTLLEIC 200
>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine
Kinase, Zeta-chain-associated protein of 70kDa. Protein
Tyrosine Kinase (PTK) family; Zeta-chain-associated
protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Zap-70 is
a member of the Syk subfamily of kinases, which are
cytoplasmic (or nonreceptor) tyr kinases containing two
Src homology 2 (SH2) domains N-terminal to the catalytic
tyr kinase domain. Zap-70 is primarily expressed in
T-cells and NK cells, and is a crucial component in
T-cell receptor (TCR) signaling. Zap-70 binds the
phosphorylated ITAM (immunoreceptor tyr activation motif)
sequences of the activated TCR zeta-chain through its SH2
domains, leading to its phosphorylation and activation.
It then phosphorylates target proteins, which propagate
the signals to downstream pathways. Zap-70 is hardly
detected in normal peripheral B-cells, but is present in
some B-cell malignancies. It is used as a diagnostic
marker for chronic lymphocytic leukemia (CLL) as it is
associated with the more aggressive subtype of the
disease.
Length = 257
Score = 32.2 bits (73), Expect = 2.1
Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 25/145 (17%)
Query: 926 LRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 985
L +L + ++++ + L Q+ G+ +L HRDL + N+LL
Sbjct: 81 LNKFLSGKKDEITVSNVVELMHQVSMGMKYLEGKNFVHRDLAARNVLLVNQH-----YAK 135
Query: 986 ITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNY----SKSDA 1039
I+DFG S L S G L APE +N+ S+SD
Sbjct: 136 ISDFGLS----KALGADDSYYKARSAGKWPLKWYAPEC----------INFRKFSSRSDV 181
Query: 1040 WTAGTVAYEIFGHDNPFYQSARNTD 1064
W+ G +E F + Y+ + +
Sbjct: 182 WSYGITMWEAFSYGQKPYKKMKGPE 206
Score = 32.2 bits (73), Expect = 2.1
Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 25/145 (17%)
Query: 1447 LRNYLRERCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 1506
L +L + ++++ + L Q+ G+ +L HRDL + N+LL
Sbjct: 81 LNKFLSGKKDEITVSNVVELMHQVSMGMKYLEGKNFVHRDLAARNVLLVNQH-----YAK 135
Query: 1507 ITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNY----SKSDA 1560
I+DFG S L S G L APE +N+ S+SD
Sbjct: 136 ISDFGLS----KALGADDSYYKARSAGKWPLKWYAPEC----------INFRKFSSRSDV 181
Query: 1561 WTAGTVAYEIFGHDNPFYQSARNTD 1585
W+ G +E F + Y+ + +
Sbjct: 182 WSYGITMWEAFSYGQKPYKKMKGPE 206
>gnl|CDD|233069 TIGR00643, recG, ATP-dependent DNA helicase RecG. [DNA metabolism,
DNA replication, recombination, and repair].
Length = 630
Score = 32.7 bits (75), Expect = 2.3
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 971 ILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS 1030
IL D D +L+ D GS T + L+M A IE G VALMAP LA S
Sbjct: 247 ILQDLKSDVPMNRLLQGDVGSGKTLVAALAML---AAIEAGYQVALMAPTEILAEQHYNS 303
Query: 1031 FVN----YSKSDAWTAGTV 1045
N A G++
Sbjct: 304 LRNLLAPLGIEVALLTGSL 322
Score = 32.7 bits (75), Expect = 2.3
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 1492 ILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS 1551
IL D D +L+ D GS T + L+M A IE G VALMAP LA S
Sbjct: 247 ILQDLKSDVPMNRLLQGDVGSGKTLVAALAML---AAIEAGYQVALMAPTEILAEQHYNS 303
Query: 1552 FVN----YSKSDAWTAGTV 1566
N A G++
Sbjct: 304 LRNLLAPLGIEVALLTGSL 322
>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-activated protein kinase
kinase kinase kinase 5. Serine/threonine kinases (STKs),
mitogen-activated protein kinase (MAPK) kinase kinase
kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to MAP4K4/6. MAP4Ks are involved in some MAPK
signaling pathways that are important in mediating
cellular responses to extracellular signals by activating
a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAP3K to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. MAP4K5, also called germinal center
kinase-related enzyme (GCKR), has been shown to activate
the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also
facilitates Wnt signaling in B cells, and may therefore
be implicated in the control of cell fate, proliferation,
and polarity.
Length = 267
Score = 31.9 bits (72), Expect = 2.5
Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 32/166 (19%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
+ L+G+ +L+ HRD+K NILL + D + + DFG + + ++ + S
Sbjct: 114 ETLQGLAYLHSKGKMHRDIKGANILLTDNGD-----VKLADFGVAAKITATIAKRKS--- 165
Query: 1008 IELGGNVALMAPEV-ALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 1066
G MAPEV A+ G ++ + D W G A E+ P + +
Sbjct: 166 --FIGTPYWMAPEVAAVEKNGGYNQL----CDIWAVGITAIELAELQPPMFDL-----HP 214
Query: 1067 VNAL----------PQL--NTNVPEVMRRLVAKLLENDPSDRPSAE 1100
+ AL P+L T V L +P RP+AE
Sbjct: 215 MRALFLMSKSNFQPPKLKDKTKWSSTFHNFVKISLTKNPKKRPTAE 260
Score = 31.9 bits (72), Expect = 2.6
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 15/103 (14%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
+ L+G+ +L+ HRD+K NILL + D + + DFG + + ++ + S
Sbjct: 114 ETLQGLAYLHSKGKMHRDIKGANILLTDNGD-----VKLADFGVAAKITATIAKRKS--- 165
Query: 1529 IELGGNVALMAPEV-ALATPGLFSFVNYSKSDAWTAGTVAYEI 1570
G MAPEV A+ G ++ + D W G A E+
Sbjct: 166 --FIGTPYWMAPEVAAVEKNGGYNQL----CDIWAVGITAIEL 202
>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase Like 1 and 4.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 1 (CDKL1) and CDKL4 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL1 and CDKL4
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKL1, also called
p42 KKIALRE, is a glial protein that is upregulated in
gliosis. It is present in neuroblastoma and A431 human
carcinoma cells, and may be implicated in neoplastic
transformation. The function of CDKL4 is unknown.
Length = 286
Score = 31.6 bits (72), Expect = 3.1
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 990
Q L+ V + H HRD+K +NIL+ ++ Q+ + DFG
Sbjct: 108 QTLQAVNFCHKHNCIHRDVKPENILI--TKQG---QIKLCDFG 145
Score = 31.6 bits (72), Expect = 3.1
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 1511
Q L+ V + H HRD+K +NIL+ ++ Q+ + DFG
Sbjct: 108 QTLQAVNFCHKHNCIHRDVKPENILI--TKQG---QIKLCDFG 145
>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 4. Protein kinases (PKs), MAP
kinase kinase 4 (MKK4) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK4 subfamily is part of a
larger superfamily that includes the catalytic domains of
other protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling pathways
are important mediators of cellular responses to
extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4
is a dual-specificity PK that phosphorylates and
activates the downstream targets, c-Jun N-terminal kinase
(JNK) and p38 MAPK, on specific threonine and tyrosine
residues. JNK and p38 are collectively known as
stress-activated MAPKs, as they are activated in response
to a variety of environmental stresses and
pro-inflammatory cytokines. Their activation is
associated with the induction of cell death. Mice
deficient in MKK4 die during embryogenesis and display
anemia, severe liver hemorrhage, and abnormal
hepatogenesis. MKK4 may also play roles in the immune
system and in cardiac hypertrophy. It plays a major role
in cancer as a tumor and metastasis suppressor. Under
certain conditions, MKK4 is pro-oncogenic.
Length = 288
Score = 31.6 bits (72), Expect = 3.9
Identities = 38/150 (25%), Positives = 52/150 (34%), Gaps = 26/150 (17%)
Query: 959 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSADIELGGNVALM 1017
+ HRD+K NILLD N +L DFG S + S A G M
Sbjct: 127 LKIIHRDVKPSNILLD---RNGNIKLC--DFGISGQ-------LVDSIAKTRDAGCRPYM 174
Query: 1018 APEVALATPGLFSFVNYS-KSDAWTAGTVAYEI----F---GHDNPFYQSARNTDYEVNA 1069
APE + + Y +SD W+ G YE+ F ++ F Q + +
Sbjct: 175 APE-RIDP---SARDGYDVRSDVWSLGITLYEVATGKFPYPKWNSVFDQLTQVVKGDPPI 230
Query: 1070 L-PQLNTNVPEVMRRLVAKLLENDPSDRPS 1098
L + L D S RP
Sbjct: 231 LSNSEEREFSPSFVNFINLCLIKDESKRPK 260
Score = 31.6 bits (72), Expect = 4.0
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 18/93 (19%)
Query: 1480 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSADIELGGNVALM 1538
+ HRD+K NILLD N +L DFG S + S A G M
Sbjct: 127 LKIIHRDVKPSNILLD---RNGNIKLC--DFGISGQ-------LVDSIAKTRDAGCRPYM 174
Query: 1539 APEVALATPGLFSFVNYS-KSDAWTAGTVAYEI 1570
APE + + Y +SD W+ G YE+
Sbjct: 175 APE-RIDP---SARDGYDVRSDVWSLGITLYEV 203
>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein
Kinases, MAP kinase kinases 3 and 6. Protein kinases
(PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily,
catalytic (c) domain. PKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine or
tyrosine residues on protein substrates. The MKK3 and
MKK6 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein
serine/threonine kinases, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling pathways
are important mediators of cellular responses to
extracellular signals. The pathways involve a triple
kinase core cascade comprising the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3
and MKK6 are dual-specificity PKs that phosphorylate and
activate their downstream target, p38 MAPK, on specific
threonine and tyrosine residues. MKK3/6 plays roles in
the regulation of cell cycle progression, cytokine- and
stress-induced apoptosis, oncogenic transformation, and
adult tissue regeneration. In addition, MKK6 plays a
critical role in osteoclast survival in inflammatory
disease while MKK3 is associated with tumor invasion,
progression, and poor patient survival in glioma.
Length = 283
Score = 31.2 bits (71), Expect = 3.9
Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 24/144 (16%)
Query: 963 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA 1022
HRD+K N+L+ N Q+ + DFG SG + + I+ G MAPE
Sbjct: 127 HRDVKPSNVLI-----NRNGQVKLCDFGI-----SGYLVDSVAKTIDAGCK-PYMAPE-- 173
Query: 1023 LATPGLFSFVNYS-KSDAWTAGTVAYEI----FGHDN---PFYQSARNTDYEVNALPQLN 1074
P L + Y KSD W+ G E+ F +D+ PF Q + + LP
Sbjct: 174 RINPEL-NQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQLKQVVEEPSPQLPA-E 231
Query: 1075 TNVPEVMRRLVAKLLENDPSDRPS 1098
PE + V K L+ + +RP+
Sbjct: 232 KFSPEF-QDFVNKCLKKNYKERPN 254
>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase 1. Protein kinases (PKs), MAP/ERK
kinase (MEK) 1 subfamily, catalytic (c) domain. PKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine or tyrosine residues on protein
substrates. The MEK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling pathways
are important mediators of cellular responses to
extracellular signals. The pathways involve a triple
kinase core cascade comprising the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1
is a dual-specificity PK that phosphorylates and
activates the downstream targets, extracellular
signal-regulated kinase (ERK) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK1, and finally to ERK1/2. The ERK cascade
plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell cycle
control, as well as in apoptosis and cell survival under
certain conditions. Gain-of-function mutations in genes
encoding ERK cascade proteins, including MEK1, cause
cardiofaciocutaneous (CFC) syndrome, a condition leading
to multiple congenital anomalies and mental retardation
in patients. MEK1 also plays a role in cell cycle
control.
Length = 333
Score = 31.2 bits (70), Expect = 4.5
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 21/103 (20%)
Query: 949 LLEGVTHL-NMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
+++G+T+L H+ HRD+K NIL+ N+ ++ + DFG S ++ +
Sbjct: 112 VIKGLTYLREKHKIMHRDVKPSNILV-----NSRGEIKLCDFGVSGQLIDSMANSFV--- 163
Query: 1008 IELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEI 1049
G + M+PE T +YS +SD W+ G E+
Sbjct: 164 ----GTRSYMSPERLQGT-------HYSVQSDIWSMGLSLVEM 195
Score = 31.2 bits (70), Expect = 4.5
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 21/103 (20%)
Query: 1470 LLEGVTHL-NMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
+++G+T+L H+ HRD+K NIL+ N+ ++ + DFG S ++ +
Sbjct: 112 VIKGLTYLREKHKIMHRDVKPSNILV-----NSRGEIKLCDFGVSGQLIDSMANSFV--- 163
Query: 1529 IELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEI 1570
G + M+PE T +YS +SD W+ G E+
Sbjct: 164 ----GTRSYMSPERLQGT-------HYSVQSDIWSMGLSLVEM 195
>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein Serine/Threonine
Kinase, Large Tumor Suppressor 1. Serine/Threonine
Kinases (STKs), Large Tumor Suppressor (LATS) subfamily,
LATS1 isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The LATS
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. LATS functions as a tumor suppressor and is
implicated in cell cycle regulation. Inactivation of
LATS1 in mice results in the development of various
tumors, including sarcomas and ovarian cancer. Promoter
methylation, loss of heterozygosity, and missense
mutations targeting the LATS1 gene have also been found
in human sarcomas and ovarian cancers. In addition,
decreased expression of LATS1 is associated with an
aggressive phenotype and poor prognosis. LATS1 induces G2
arrest and promotes cytokinesis. It may be a component of
the mitotic exit network in higher eukaryotes.
Length = 382
Score = 31.5 bits (71), Expect = 4.6
Identities = 50/192 (26%), Positives = 68/192 (35%), Gaps = 74/192 (38%)
Query: 910 GRNMSLFILMKKYNTDL-RNYLRE-RCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLK 967
G MSL I M + DL R Y+ E CA S+H+ + HRD+K
Sbjct: 86 GDMMSLLIRMGIFPEDLARFYIAELTCAVESVHKMGFI-----------------HRDIK 128
Query: 968 SDNILLDCSEDNTCPQLVITDFG---------SSYTNKSGLSMQYSSADI---------- 1008
DNIL+D D + +TDFG S +SG ++ S D
Sbjct: 129 PDNILID--RDG---HIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANC 183
Query: 1009 -----------------------ELGGNVALMAPEVALATPGLFSFVNYSK-SDAWTAGT 1044
L G +APEV L T Y++ D W+ G
Sbjct: 184 RCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRT-------GYTQLCDWWSVGV 236
Query: 1045 VAYEIFGHDNPF 1056
+ YE+ PF
Sbjct: 237 ILYEMLVGQPPF 248
Score = 31.5 bits (71), Expect = 4.6
Identities = 50/192 (26%), Positives = 68/192 (35%), Gaps = 74/192 (38%)
Query: 1431 GRNMSLFILMKKYNTDL-RNYLRE-RCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLK 1488
G MSL I M + DL R Y+ E CA S+H+ + HRD+K
Sbjct: 86 GDMMSLLIRMGIFPEDLARFYIAELTCAVESVHKMGFI-----------------HRDIK 128
Query: 1489 SDNILLDCSEDNTCPQLVITDFG---------SSYTNKSGLSMQYSSADI---------- 1529
DNIL+D D + +TDFG S +SG ++ S D
Sbjct: 129 PDNILID--RDG---HIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANC 183
Query: 1530 -----------------------ELGGNVALMAPEVALATPGLFSFVNYSK-SDAWTAGT 1565
L G +APEV L T Y++ D W+ G
Sbjct: 184 RCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRT-------GYTQLCDWWSVGV 236
Query: 1566 VAYEIFGHDNPF 1577
+ YE+ PF
Sbjct: 237 ILYEMLVGQPPF 248
>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine Kinase,
Cyclin-Dependent protein Kinase Like 5. Serine/Threonine
Kinases (STKs), Cyclin-dependent protein kinase like 5
(CDKL5) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CDKL5 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. Mutations in the
gene encoding CDKL5, previously called STK9, are
associated with early onset epilepsy and severe mental
retardation [X-linked infantile spasm syndrome (ISSX) or
West syndrome]. In addition, CDKL5 mutations also
sometimes cause a phenotype similar to Rett syndrome
(RTT), a progressive neurodevelopmental disorder. These
pathogenic mutations are located in the N-terminal
portion of the protein within the kinase domain.
Length = 287
Score = 31.1 bits (70), Expect = 4.7
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 17/103 (16%)
Query: 948 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
QL++ + + + HRD+K +N+L+ S ++ L + DFG + G + Y+
Sbjct: 108 QLIKAIHWCHKNDIVHRDIKPENLLI--SHNDV---LKLCDFGFARNLSEGSNANYT--- 159
Query: 1008 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEI 1049
E +PE+ L P Y K+ D W+ G + E+
Sbjct: 160 -EYVATRWYRSPELLLGAP-------YGKAVDMWSVGCILGEL 194
Score = 31.1 bits (70), Expect = 4.7
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 17/103 (16%)
Query: 1469 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
QL++ + + + HRD+K +N+L+ S ++ L + DFG + G + Y+
Sbjct: 108 QLIKAIHWCHKNDIVHRDIKPENLLI--SHNDV---LKLCDFGFARNLSEGSNANYT--- 159
Query: 1529 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEI 1570
E +PE+ L P Y K+ D W+ G + E+
Sbjct: 160 -EYVATRWYRSPELLLGAP-------YGKAVDMWSVGCILGEL 194
>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase 2. Protein kinases (PKs), MAP/ERK
Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine or tyrosine residues on protein
substrates. The MEK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling pathways
are important mediators of cellular responses to
extracellular signals. The pathways involve a triple
kinase core cascade comprising the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2
is a dual-specificity PK that phosphorylates and
activates the downstream targets, extracellular
signal-regulated kinase (ERK) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK2, and finally to ERK1/2. The ERK cascade
plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell cycle
control, as well as in apoptosis and cell survival under
certain conditions. Gain-of-function mutations in genes
encoding ERK cascade proteins, including MEK2, cause
cardiofaciocutaneous (CFC) syndrome, a condition leading
to multiple congenital anomalies and mental retardation
in patients.
Length = 331
Score = 31.2 bits (70), Expect = 5.2
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 21/103 (20%)
Query: 949 LLEGVTHL-NMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1007
+L G+ +L H+ HRD+K NIL+ N+ ++ + DFG S ++ +
Sbjct: 112 VLRGLAYLREKHQIMHRDVKPSNILV-----NSRGEIKLCDFGVSGQLIDSMANSFV--- 163
Query: 1008 IELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEI 1049
G + M+PE T +YS +SD W+ G E+
Sbjct: 164 ----GTRSYMSPERLQGT-------HYSVQSDIWSMGLSLVEL 195
Score = 31.2 bits (70), Expect = 5.2
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 21/103 (20%)
Query: 1470 LLEGVTHL-NMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 1528
+L G+ +L H+ HRD+K NIL+ N+ ++ + DFG S ++ +
Sbjct: 112 VLRGLAYLREKHQIMHRDVKPSNILV-----NSRGEIKLCDFGVSGQLIDSMANSFV--- 163
Query: 1529 IELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEI 1570
G + M+PE T +YS +SD W+ G E+
Sbjct: 164 ----GTRSYMSPERLQGT-------HYSVQSDIWSMGLSLVEL 195
>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C eta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), eta isoform, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The nPKC
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of their
regulatory domain. nPKCs are calcium-independent, but
require DAG (1,2-diacylglycerol) and phosphatidylserine
(PS) for activity. There are four nPKC isoforms, delta,
epsilon, eta, and theta. PKC-eta is predominantly
expressed in squamous epithelia, where it plays a crucial
role in the signaling of cell-type specific
differentiation. It is also expressed in pro-B cells and
early-stage thymocytes, and acts as a key regulator in
early B-cell development. PKC-eta increases glioblastoma
multiforme (GBM) proliferation and resistance to
radiation, and is being developed as a therapeutic target
for the management of GBM.
Length = 320
Score = 31.0 bits (70), Expect = 5.6
Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 18/116 (15%)
Query: 1484 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA 1543
+RDLK DN+LLD + C + DFG K G+ +++ G +APE+
Sbjct: 119 YRDLKLDNVLLD--HEGHCK---LADFGMC---KEGIFNGKTTS--TFCGTPDYIAPEI- 167
Query: 1544 LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYWHRKWLWQHLVYS 1599
L + D W G + YE+ PF A N D L +VY
Sbjct: 168 -----LQEMLYGPSVDWWAMGVLLYEMLCGHAPF--EAENEDDLFEAILNDEVVYP 216
>gnl|CDD|238567 cd01147, HemV-2, Metal binding protein HemV-2. These proteins are
predicted to function as initial receptors in ABC
transport of metal ions. They belong to the TroA
superfamily of helical backbone metal receptor proteins
that share a distinct fold and ligand binding mechanism.
A typical TroA protein is comprised of two globular
subdomains connected by a single helix and can bind the
metal ion in the cleft between these domains. In
addition, these proteins sometimes have a low complexity
region containing a metal-binding histidine-rich motif
(repetitive HDH sequence).
Length = 262
Score = 30.8 bits (70), Expect = 5.6
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 816 CTGVSYGGHVRRTFVEYQLISTFL---KRAEFRLITNALQYIQRNEDMLMNSVENLPPHP 872
+ G + T + +L+ L +RAE LI+ +I+ + +++P
Sbjct: 101 VVVLDGGDSLEDTPEQIRLLGKVLGKEERAE-ELIS----FIESILADVEERTKDIPDEE 155
Query: 873 NVVV 876
V
Sbjct: 156 KPTV 159
>gnl|CDD|149993 pfam09141, Talin_middle, Talin, middle domain. Members of this
family adopt a structure consisting of five alpha
helices that fold into a bundle. They contain a Vinculin
binding site (VBS) composed of a hydrophobic surface
spanning five turns of helix four. Activation of the VBS
causes subsequent recruitment of Vinculin, which enables
maturation of small integrin/talin complexes into more
stable adhesions. Formation of the complex between VBS
and Vinculin requires prior unfolding of this middle
domain: once released from the talin hydrophobic core,
the VBS helix is then available to induce the 'bundle
conversion' conformational change within the vinculin
head domain thereby displacing the intramolecular
interaction with the vinculin tail, allowing vinculin to
bind actin.
Length = 161
Score = 30.2 bits (68), Expect = 6.4
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 298 TDYEV--NALPQLNTNVPEVMR--RLVAKLLENDPSDRPSAELAATVC 341
TDY A+ +++N+PEV + +L+A L+E+D + + A +
Sbjct: 78 TDYTAVGAAVTTISSNLPEVSKGVKLLAALMEDDGNGDDLLDAARKLA 125
Score = 30.2 bits (68), Expect = 6.4
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 739 TDYEV--NALPQLNTNVPEVMR--RLVAKLLENDPSDRPSAELAATVC 782
TDY A+ +++N+PEV + +L+A L+E+D + + A +
Sbjct: 78 TDYTAVGAAVTTISSNLPEVSKGVKLLAALMEDDGNGDDLLDAARKLA 125
Score = 30.2 bits (68), Expect = 6.4
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 1063 TDYEV--NALPQLNTNVPEVMR--RLVAKLLENDPSDRPSAELAATVC 1106
TDY A+ +++N+PEV + +L+A L+E+D + + A +
Sbjct: 78 TDYTAVGAAVTTISSNLPEVSKGVKLLAALMEDDGNGDDLLDAARKLA 125
Score = 30.2 bits (68), Expect = 6.4
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 1626 TDYEV--NALPQLNTNVPEVMR--RLVAKLLENDPSDRPSAELAATVC 1669
TDY A+ +++N+PEV + +L+A L+E+D + + A +
Sbjct: 78 TDYTAVGAAVTTISSNLPEVSKGVKLLAALMEDDGNGDDLLDAARKLA 125
>gnl|CDD|133217 cd05086, PTKc_Aatyk2, Catalytic domain of the Protein Tyrosine
Kinase, Apoptosis-associated tyrosine kinase 2. Protein
Tyrosine Kinase (PTK) family; Apoptosis-associated
tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The
PTKc family is part of a larger superfamily that includes
the catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Aatyk2 is
a member of the Aatyk subfamily of proteins, which are
receptor kinases containing a transmembrane segment and a
long C-terminal cytoplasmic tail with a catalytic domain.
Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or
brain-enriched kinase (Brek). It is expressed at high
levels in early postnatal brain, and has been shown to
play a role in nerve growth factor (NGF) signaling.
Studies with knockout mice reveal that Aatyk2 is
essential for late stage spermatogenesis. Although it is
classified as a tyr kinase based on sequence similarity
and the phylogenetic tree, Aatyk2 has been characterized
as a serine/threonine kinase.
Length = 268
Score = 30.6 bits (69), Expect = 7.4
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 23/178 (12%)
Query: 925 DLRNYLRE-----RCAQLSMHERILLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDN 979
DL++YL + R +QL + +R + ++ GVTH++ H H DL N L + D
Sbjct: 81 DLKSYLSQEQWHRRNSQLLLLQR--MACEIAAGVTHMHKHNFLHSDLALRNCFL--TSDL 136
Query: 980 TCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPE-VALATPGLFSFVNYSKSD 1038
T + + D+G + Y + + + +APE V GL + S+
Sbjct: 137 T---VKVGDYGIGPSR---YKEDYIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSN 190
Query: 1039 AWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDR 1096
W G +E+F +N + +D EV LN + + +L LE S+R
Sbjct: 191 VWALGVTLWELF--ENAAQPYSHLSDREV-----LNHVIKDQQVKLFKPQLELPYSER 241
>gnl|CDD|143372 cd07867, STKc_CDC2L6, Catalytic domain of Serine/Threonine Kinase,
Cell Division Cycle 2-like 6. Serine/Threonine Kinases
(STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDC2L6 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDC2L6 is also called CDK8-like and was
previously referred to as CDK11. However, this is a
confusing nomenclature as CDC2L6 is distinct from CDC2L1,
which is represented by the two protein products from its
gene, called CDK11(p110) and CDK11(p58), as well as the
caspase-processed CDK11(p46). CDK11(p110), CDK11(p58),
and CDK11(p46)do not belong to this subfamily. CDC2L6 is
an associated protein of Mediator, a multiprotein complex
that provides a platform to connect transcriptional and
chromatin regulators and cofactors, in order to activate
and mediate RNA polymerase II transcription. CDC2L6 is
localized mainly in the nucleus amd exerts an opposing
effect to CDK8 in VP16-dependent transcriptional
activation by being a negative regulator.
Length = 317
Score = 30.4 bits (68), Expect = 8.3
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 25/142 (17%)
Query: 945 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 1004
L Q+L+G+ +L+ + HRDLK NIL+ E ++ I D G + S L
Sbjct: 113 LLYQILDGIHYLHANWVLHRDLKPANILV-MGEGPERGRVKIADMGFARLFNSPLK---P 168
Query: 1005 SADIE-LGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHD--------- 1053
AD++ + APE+ L +Y+K+ D W G + E+ +
Sbjct: 169 LADLDPVVVTFWYRAPELLLGAR------HYTKAIDIWAIGCIFAELLTSEPIFHCRQED 222
Query: 1054 ----NPFYQSARNTDYEVNALP 1071
NPF+ + + V P
Sbjct: 223 IKTSNPFHHDQLDRIFSVMGFP 244
>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein
Serine/Threonine Kinase, Microtubule-associated
serine/threonine-like kinase. Serine/Threonine Kinases
(STKs), Microtubule-associated serine/threonine (MAST)
kinase subfamily, MAST-like (MASTL) kinases, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAST kinase
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAST kinases contain an N-terminal domain of
unknown function, a central catalytic domain, and a
C-terminal PDZ domain that mediates protein-protein
interactions. The MASTL kinases in this group carry only
a catalytic domain, which contains a long insertion
relative to MAST kinases. The human MASTL gene has also
been labelled FLJ14813. A missense mutation in FLJ14813
is associated with autosomal dominant thrombocytopenia.
To date, the function of MASTL is unknown.
Length = 669
Score = 30.6 bits (69), Expect = 9.6
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 955 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS 992
+L+ H HRDLK DN+L+ + +TDFG S
Sbjct: 119 YLHRHGIIHRDLKPDNMLISNEG-----HIKLTDFGLS 151
Score = 30.6 bits (69), Expect = 9.6
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 1476 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS 1513
+L+ H HRDLK DN+L+ + +TDFG S
Sbjct: 119 YLHRHGIIHRDLKPDNMLISNEG-----HIKLTDFGLS 151
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.400
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 89,630,675
Number of extensions: 8941031
Number of successful extensions: 9071
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8579
Number of HSP's successfully gapped: 802
Length of query: 1751
Length of database: 10,937,602
Length adjustment: 111
Effective length of query: 1640
Effective length of database: 6,014,308
Effective search space: 9863465120
Effective search space used: 9863465120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (29.1 bits)