BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy378
         (107 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
           Substrates And Inhibitors Of Rat Monoamine Oxidase A
 pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
           Substrates And Inhibitors Of Rat Monoamine Oxidase A
 pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
           Substrates And Inhibitors Of Rat Monoamine Oxidase A
 pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
           Substrates And Inhibitors Of Rat Monoamine Oxidase A
          Length = 534

 Score = 30.4 bits (67), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 12  YRFRIKFPPDGNRINYVNYDKIDPFADELPKEI 44
           Y FR  FPP  N + Y++Y+ +    DE+ KEI
Sbjct: 114 YPFRGAFPPVWNPLAYLDYNNLWRTMDEMGKEI 146


>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
           With Harmine
          Length = 513

 Score = 30.4 bits (67), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 12  YRFRIKFPPDGNRINYVNYDKIDPFADELPKEI 44
           Y FR  FPP  N I Y++Y+ +    D + KEI
Sbjct: 95  YPFRAAFPPVWNPIAYLDYNNLWRTIDNMGKEI 127


>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex
           With Methylene Blue And Bearing The Double Mutation
           I199a- Y326a
 pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In Complex
           With Methylene Blue And Bearing The Double Mutation
           I199a- Y326a
          Length = 519

 Score = 29.6 bits (65), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 6   HSDNEPYRFRIKFPPDGNRINYVNYDKIDPFADELPKEI--EDVW-ATLCSCWPN 57
           H   + Y FR  FPP  N I Y++++      D++ +EI  +  W A L   W N
Sbjct: 90  HVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDN 144


>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
           Oxidase B: Structures And Catalytic Properties Of Tyr435
           Mutant Proteins
 pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
           Oxidase B: Structures And Catalytic Properties Of Tyr435
           Mutant Proteins
          Length = 520

 Score = 29.6 bits (65), Expect = 0.39,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 6   HSDNEPYRFRIKFPPDGNRINYVNYDKIDPFADELPKEI--EDVW-ATLCSCWPN 57
           H   + Y FR  FPP  N I Y++++      D++ +EI  +  W A L   W N
Sbjct: 91  HVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDN 145


>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
 pdb|1GOS|B Chain B, Human Monoamine Oxidase B
 pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
           1,4-Diphenyl-2-Butene
 pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
           1,4-Diphenyl-2-Butene
 pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
 pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
 pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
           N-(2-Aminoethyl)-P-Chlorobenzamide
 pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
           N-(2-Aminoethyl)-P-Chlorobenzamide
 pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
           Lauryldimethylamine-N-Oxide (Ldao)
 pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
           Lauryldimethylamine-N-Oxide (Ldao)
 pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
           Lauryldimethylamine-N-Oxide (Ldao)
 pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
           Lauryldimethylamine-N-Oxide (Ldao)
 pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
           Lauryldimethylamine-N-Oxide (Ldao)
 pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
           Lauryldimethylamine-N-Oxide (Ldao)
 pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
           Lauryldimethylamine-N-Oxide (Ldao)
 pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
           Lauryldimethylamine-N-Oxide (Ldao)
 pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
           Lauryldimethylamine-N-Oxide (Ldao)
 pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
           Lauryldimethylamine-N-Oxide (Ldao)
 pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
           N-Propargyl-1(R)-Aminoindan (Rasagiline)
 pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
           N-Propargyl-1(R)-Aminoindan (Rasagiline)
 pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
           N-propargyl-1(s)- Aminoindan
 pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
           N-propargyl-1(s)- Aminoindan
 pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
           Propargyl-1(R)-Aminoindan
 pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
           Propargyl-1(R)-Aminoindan
 pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
           Propargyl-1(R)-Aminoindan
 pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
           Propargyl-1(R)-Aminoindan
 pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
 pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
 pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
 pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
 pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
 pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
 pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
 pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
 pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
 pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
 pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
 pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
 pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
           Oxidase B: Structures And Catalytic Properties Of Tyr435
           Mutant Proteins
 pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
           Oxidase B: Structures And Catalytic Properties Of Tyr435
           Mutant Proteins
 pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
           Inhibitor Safinamide
 pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
           Inhibitor Safinamide
 pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
           Inhibitor
           7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
 pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
           Inhibitor
           7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
 pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
           Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
           Coumarin
 pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
           Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
           Coumarin
 pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
 pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
 pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
           Phenyethylhydrazine
 pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
           Phenyethylhydrazine
 pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
 pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
 pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
           Complex With 2-(2-Benzofuranyl)-2-Imidazoline
 pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
           Complex With 2-(2-Benzofuranyl)-2-Imidazoline
 pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
           2-(2-Benzofuranyl) -2-Imidazoline
 pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
           2-(2-Benzofuranyl) -2-Imidazoline
 pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
           2-(2-Benzofuranyl)-2-Imidazoline
 pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
           2-(2-Benzofuranyl)-2-Imidazoline
 pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
           With 2-(2-Benzofuranyl)-2-Imidazoline
 pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
           With 2-(2-Benzofuranyl)-2-Imidazoline
 pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
 pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
 pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
           Complex With Pioglitazone
 pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
           Complex With Pioglitazone
 pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
           Complex With Rosiglitazone
 pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
           Complex With Rosiglitazone
          Length = 520

 Score = 29.6 bits (65), Expect = 0.40,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 6   HSDNEPYRFRIKFPPDGNRINYVNYDKIDPFADELPKEI--EDVW-ATLCSCWPN 57
           H   + Y FR  FPP  N I Y++++      D++ +EI  +  W A L   W N
Sbjct: 91  HVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDN 145


>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
           Oxidase B: Structures And Catalytic Properties Of Tyr435
           Mutant Proteins
 pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
           Oxidase B: Structures And Catalytic Properties Of Tyr435
           Mutant Proteins
          Length = 520

 Score = 29.6 bits (65), Expect = 0.40,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 6   HSDNEPYRFRIKFPPDGNRINYVNYDKIDPFADELPKEI--EDVW-ATLCSCWPN 57
           H   + Y FR  FPP  N I Y++++      D++ +EI  +  W A L   W N
Sbjct: 91  HVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDN 145


>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
           Rasagiline
 pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
           Rasagiline
 pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
           Isatin
 pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
           Isatin
          Length = 520

 Score = 29.6 bits (65), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 6   HSDNEPYRFRIKFPPDGNRINYVNYDKIDPFADELPKEI--EDVW-ATLCSCWPN 57
           H   + Y FR  FPP  N I Y++++      D++ +EI  +  W A L   W N
Sbjct: 91  HVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDN 145


>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
           Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
           Imidazoline
 pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
           Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
           Imidazoline
          Length = 520

 Score = 29.6 bits (65), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 6   HSDNEPYRFRIKFPPDGNRINYVNYDKIDPFADELPKEI--EDVW-ATLCSCWPN 57
           H   + Y FR  FPP  N I Y++++      D++ +EI  +  W A L   W N
Sbjct: 91  HVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDN 145


>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
 pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
          Length = 519

 Score = 29.6 bits (65), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 6   HSDNEPYRFRIKFPPDGNRINYVNYDKIDPFADELPKEI--EDVW-ATLCSCWPN 57
           H   + Y FR  FPP  N I Y++++      D++ +EI  +  W A L   W N
Sbjct: 90  HVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDN 144


>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
           Oxidase B: Structures And Catalytic Properties Of Tyr435
           Mutant Proteins
 pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
           Oxidase B: Structures And Catalytic Properties Of Tyr435
           Mutant Proteins
          Length = 520

 Score = 29.6 bits (65), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 6   HSDNEPYRFRIKFPPDGNRINYVNYDKIDPFADELPKEI--EDVW-ATLCSCWPN 57
           H   + Y FR  FPP  N I Y++++      D++ +EI  +  W A L   W N
Sbjct: 91  HVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDN 145


>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
           Oxidase B: Structures And Catalytic Properties Of Tyr435
           Mutant Proteins
 pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
           Oxidase B: Structures And Catalytic Properties Of Tyr435
           Mutant Proteins
          Length = 520

 Score = 29.6 bits (65), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 6   HSDNEPYRFRIKFPPDGNRINYVNYDKIDPFADELPKEI--EDVW-ATLCSCWPN 57
           H   + Y FR  FPP  N I Y++++      D++ +EI  +  W A L   W N
Sbjct: 91  HVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDN 145


>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
           Harmine
          Length = 513

 Score = 29.6 bits (65), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 12  YRFRIKFPPDGNRINYVNYDKIDPFADELPKEI 44
           Y FR  FPP  N I Y++Y+ +    D + KEI
Sbjct: 95  YPFRGAFPPVWNPIAYLDYNNLWRTIDNMGKEI 127


>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
           Crystal Form A
 pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
           Crystal Form A
 pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
           Crystal Form B
 pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
           Crystal Form B
          Length = 527

 Score = 29.6 bits (65), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 12  YRFRIKFPPDGNRINYVNYDKIDPFADELPKEI 44
           Y FR  FPP  N I Y++Y+ +    D + KEI
Sbjct: 106 YPFRGAFPPVWNPIAYLDYNNLWRTIDNMGKEI 138


>pdb|1GU2|A Chain A, Crystal Structure Of Oxidized Cytochrome C" From
           Methylophilus Methylotrophus
 pdb|1GU2|B Chain B, Crystal Structure Of Oxidized Cytochrome C" From
           Methylophilus Methylotrophus
 pdb|1OAE|A Chain A, Crystal Structure Of The Reduced Form Of Cytochrome C"
           From Methylophilus Methylotrophus
 pdb|1OAE|B Chain B, Crystal Structure Of The Reduced Form Of Cytochrome C"
           From Methylophilus Methylotrophus
 pdb|1E8E|A Chain A, Solution Structure Of Methylophilus Methylotrophus
           Cytochrome C''. Insights Into The Structural Basis Of
           Haem- Ligand Detachment
          Length = 124

 Score = 28.9 bits (63), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 17  KFPPDGNRINYVNYDKIDPFADELPKEIEDVWATLCSCWPNNMKVIIRYLIIMS 70
           + PP   R+N   +  ID   DE  K   D+    CS  P+     I YL+  +
Sbjct: 69  EIPPLAPRVNTKRFTDIDKVEDEFTKHCNDILGADCS--PSEKANFIAYLLTET 120


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.141    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,431,034
Number of Sequences: 62578
Number of extensions: 131080
Number of successful extensions: 212
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 198
Number of HSP's gapped (non-prelim): 14
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)