BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy378
(107 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VT28|FRY_DROME Protein furry OS=Drosophila melanogaster GN=fry PE=1 SV=2
Length = 3479
Score = 75.9 bits (185), Expect = 8e-14, Method: Composition-based stats.
Identities = 35/68 (51%), Positives = 49/68 (72%), Gaps = 5/68 (7%)
Query: 36 FADELPKEIEDVWATLCSCWPNNMKVIIRYLIIMSGMAPNQLLNYLSMKVIIRYLIIMSG 95
F+D P++IE++W TLC WPNN+KVI+RYL+IMSGMAP +LL Y K + YL+
Sbjct: 1742 FSDAHPRDIEELWGTLCQFWPNNLKVILRYLVIMSGMAPTELLPY--AKRVALYLV---R 1796
Query: 96 MAPNQLLN 103
P++LL+
Sbjct: 1797 SCPDRLLD 1804
>sp|O94915|FRYL_HUMAN Protein furry homolog-like OS=Homo sapiens GN=FRYL PE=1 SV=2
Length = 3013
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Query: 36 FADELP-KEIEDVWATLCSCWPNNMKVIIRYLIIMSGM-APNQLLNYLSMKVIIRYL 90
+ DEL E+E+VW TL WP N+K+I+ +LI + G+ + LL Y+ K +I YL
Sbjct: 1376 YGDELAWSEVENVWTTLADGWPKNLKIILHFLISICGVNSEPSLLPYV--KKVIVYL 1430
>sp|E9Q8I9|FRY_MOUSE Protein furry homolog OS=Mus musculus GN=Fry PE=1 SV=1
Length = 3020
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 36 FADELP-KEIEDVWATLCSC--WPNNMKVIIRYLIIMSGMAPNQLL 78
+ DE+P E+E+ W L + W NN++V +++LI + G++ + +L
Sbjct: 1426 YGDEVPGAEMENAWNALANNEKWSNNLRVTLQFLISLCGVSSDTIL 1471
>sp|Q5TBA9|FRY_HUMAN Protein furry homolog OS=Homo sapiens GN=FRY PE=1 SV=1
Length = 3013
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 36 FADELP-KEIEDVWATLCSC--WPNNMKVIIRYLIIMSGMAPNQLL 78
+ DE+P E+E+ W L + W NN+++ +++LI + G++ + +L
Sbjct: 1426 YGDEVPGPEMENAWNALANNEKWSNNLRITLQFLISLCGVSSDTVL 1471
>sp|B9MJT8|MIAA_CALBD tRNA dimethylallyltransferase OS=Caldicellulosiruptor bescii
(strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=miaA PE=3
SV=1
Length = 312
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 16 IKFPP--DGNRINYVNYDKIDPFAD----ELPKEIEDVWATLCSCWPNNMKVIIRYLII- 68
I+FP D ++ +D+++ + EL KEI+ A S PNN+K +IRYL I
Sbjct: 113 IEFPEMGDSKQVRKKLFDELNNKGNMYLYELLKEIDKDAAN--SVHPNNVKRVIRYLEIY 170
Query: 69 -MSGMAPNQLLNYLSMKVIIRY 89
++G P + L+ + K RY
Sbjct: 171 FLTGKKPTEFLDKVRRKGSERY 192
>sp|P58028|AOFB_CAVPO Amine oxidase [flavin-containing] B OS=Cavia porcellus GN=MAOB PE=2
SV=2
Length = 520
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 6 HSDNEPYRFRIKFPPDGNRINYVNYDKIDPFADELPKEI 44
H + Y FR FPP N I+Y++++ + D++ KEI
Sbjct: 91 HVKGKSYPFRGPFPPAWNPISYLDHNNLWRTMDDMGKEI 129
>sp|P19643|AOFB_RAT Amine oxidase [flavin-containing] B OS=Rattus norvegicus GN=Maob
PE=1 SV=3
Length = 520
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 12 YRFRIKFPPDGNRINYVNYDKIDPFADELPKEI 44
Y FR FPP N I Y++Y+ + DE+ +EI
Sbjct: 97 YAFRGPFPPVWNPITYLDYNNLWRTMDEMGQEI 129
>sp|Q5F3A1|SEC62_CHICK Translocation protein SEC62 OS=Gallus gallus GN=SEC62 PE=2 SV=1
Length = 398
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 21 DGNRINYVNYDKI--DPFADELPKEIEDVWATLCSCWPNNMKVIIRYLIIMSGMAPNQLL 78
DGN + YD + FA L I + ATL WP M+V + YL + +G +L
Sbjct: 180 DGNEVYVWIYDPVHFKTFAMGLVLVIAVIAATLFPLWPAEMRVGVYYLSVGAGCFVASIL 239
Query: 79 NYLSMKVIIRYLII 92
L++ I +LII
Sbjct: 240 -LLAVARCILFLII 252
>sp|P21396|AOFA_RAT Amine oxidase [flavin-containing] A OS=Rattus norvegicus GN=Maoa
PE=1 SV=1
Length = 526
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 12 YRFRIKFPPDGNRINYVNYDKIDPFADELPKEI 44
Y FR FPP N + Y++Y+ + DE+ KEI
Sbjct: 106 YPFRGAFPPVWNPLAYLDYNNLWRTMDEMGKEI 138
>sp|Q5RE98|AOFB_PONAB Amine oxidase [flavin-containing] B OS=Pongo abelii GN=MAOB PE=2
SV=3
Length = 520
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 6 HSDNEPYRFRIKFPPDGNRINYVNYDKIDPFADELPKEI--EDVW-ATLCSCWPN-NMKV 61
H + Y FR FPP N I Y++++ D++ +EI + W A L W N MK
Sbjct: 91 HVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKE 150
Query: 62 IIRYL 66
++ L
Sbjct: 151 LVDKL 155
>sp|Q6C1T4|IPYR_YARLI Inorganic pyrophosphatase OS=Yarrowia lipolytica (strain CLIB 122 /
E 150) GN=IPP1 PE=3 SV=1
Length = 287
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 4 LLHSDNEPYRFRIKFPPDG---NRINYVNYDKIDPFADELPKEIEDVWATLCSCWPNNMK 60
LL + NE FRI PDG N+ + K +ADE+ +E E+ W TL + ++ K
Sbjct: 183 LLRATNE--WFRIYKIPDGKPENQFAFSGECKNKKYADEVIRECEEAWETLIAGKASDDK 240
Query: 61 VI 62
I
Sbjct: 241 GI 242
>sp|P27338|AOFB_HUMAN Amine oxidase [flavin-containing] B OS=Homo sapiens GN=MAOB PE=1
SV=3
Length = 520
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 6 HSDNEPYRFRIKFPPDGNRINYVNYDKIDPFADELPKEI--EDVW-ATLCSCWPN 57
H + Y FR FPP N I Y++++ D++ +EI + W A L W N
Sbjct: 91 HVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDN 145
>sp|Q8BU14|SEC62_MOUSE Translocation protein SEC62 OS=Mus musculus GN=Sec62 PE=1 SV=1
Length = 398
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 21 DGNRINYVNYD--KIDPFADELPKEIEDVWATLCSCWPNNMKVIIRYLIIMSGMAPNQLL 78
DGN + YD I F L I + ATL WP M+V + YL + +G +L
Sbjct: 180 DGNEVFVWIYDPVHIKTFVMGLILVIAVIAATLFPLWPAEMRVGVYYLSVGAGCFVASIL 239
Query: 79 NYLSMKVIIRYLII 92
L++ I +LII
Sbjct: 240 -LLAIARCILFLII 252
>sp|Q9RQB9|CYCA_METME Cytochrome c'' OS=Methylophilus methylotrophus GN=cycA PE=1 SV=1
Length = 144
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 19 PPDGNRINYVNYDKIDPFADELPKEIEDVWATLCSCWPNNMKVIIRYLIIMS 70
PP R+N + ID DE K D+ CS P+ I YL+ +
Sbjct: 91 PPLAPRVNTKRFTDIDKVEDEFTKHCNDILGADCS--PSEKANFIAYLLTET 140
>sp|Q5R4Q3|SEC62_PONAB Translocation protein SEC62 OS=Pongo abelii GN=SEC62 PE=2 SV=1
Length = 399
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 21 DGNRINYVNYDKI--DPFADELPKEIEDVWATLCSCWPNNMKVIIRYLIIMSGMAPNQLL 78
DGN + YD + F L I + ATL WP M+V + YL + +G +L
Sbjct: 180 DGNEVYVWIYDPVHFKTFVMGLILVIAVIAATLFPLWPAEMRVGVYYLSVGAGCFVASIL 239
Query: 79 NYLSMKVIIRYLII 92
L++ I +LII
Sbjct: 240 -LLAVARCILFLII 252
>sp|Q99442|SEC62_HUMAN Translocation protein SEC62 OS=Homo sapiens GN=SEC62 PE=1 SV=1
Length = 399
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 21 DGNRINYVNYDKI--DPFADELPKEIEDVWATLCSCWPNNMKVIIRYLIIMSGMAPNQLL 78
DGN + YD + F L I + ATL WP M+V + YL + +G +L
Sbjct: 180 DGNEVYVWIYDPVHFKTFVMGLILVIAVIAATLFPLWPAEMRVGVYYLSVGAGCFVASIL 239
Query: 79 NYLSMKVIIRYLII 92
L++ I +LII
Sbjct: 240 -LLAVARCILFLII 252
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.141 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,410,963
Number of Sequences: 539616
Number of extensions: 1608629
Number of successful extensions: 3009
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3003
Number of HSP's gapped (non-prelim): 17
length of query: 107
length of database: 191,569,459
effective HSP length: 75
effective length of query: 32
effective length of database: 151,098,259
effective search space: 4835144288
effective search space used: 4835144288
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)