Query psy378
Match_columns 107
No_of_seqs 36 out of 38
Neff 2.5
Searched_HMMs 29240
Date Fri Aug 16 17:11:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dzd_A Transcriptional regulat 51.8 12 0.0004 28.8 3.3 31 45-75 332-363 (368)
2 3jtp_A Adapter protein MECA 1; 31.0 51 0.0017 21.4 3.4 28 26-54 38-65 (98)
3 1aih_A HP1 integrase; DNA inte 30.2 79 0.0027 20.2 4.2 36 42-78 10-45 (170)
4 1ny5_A Transcriptional regulat 30.1 35 0.0012 26.2 2.8 23 45-67 341-364 (387)
5 4a5u_A RNA replicase polyprote 25.7 30 0.001 25.8 1.7 40 36-77 69-108 (160)
6 1ae9_A Lambda integrase; DNA r 24.9 75 0.0026 20.2 3.3 36 41-78 6-41 (179)
7 1ojl_A Transcriptional regulat 24.2 54 0.0019 24.2 2.9 21 46-66 207-228 (304)
8 3pxi_a Adapter protein MECA 1; 24.0 78 0.0027 21.1 3.4 28 26-54 51-78 (111)
9 1mn8_A Core protein P15; helic 23.4 85 0.0029 21.9 3.6 36 46-81 34-84 (100)
10 1uhu_A Product of riken cDNA 3 22.6 97 0.0033 21.8 3.8 37 45-81 33-84 (105)
11 2bjv_A PSP operon transcriptio 21.5 68 0.0023 22.2 2.8 22 45-66 211-233 (265)
No 1
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=51.79 E-value=12 Score=28.83 Aligned_cols=31 Identities=13% Similarity=0.185 Sum_probs=21.3
Q ss_pred HHHHHHHHh-cCCCchHHHHHHHHHHhCCCcc
Q psy378 45 EDVWATLCS-CWPNNMKVIIRYLIIMSGMAPN 75 (107)
Q Consensus 45 e~lW~TL~~-~WPnNLrvILryLiimsg~sp~ 75 (107)
+++...|.. +||.|+|-..+.+=-++-++.+
T Consensus 332 ~~a~~~L~~~~wpGNvreL~n~i~~~~~~~~~ 363 (368)
T 3dzd_A 332 EETKEYLMKQEWKGNVRELKNLIERAVILCEG 363 (368)
T ss_dssp HHHHHHHHTCCCTTHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHhCCC
Confidence 456777886 6999998877666555544443
No 2
>3jtp_A Adapter protein MECA 1; MECA;adaptor protein;degradation TAG, competence, sporulation, protein binding; 2.17A {Bacillus subtilis} PDB: 2y1r_I* 3pxg_a
Probab=31.05 E-value=51 Score=21.37 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=23.7
Q ss_pred cceeEEEeecCCCcChHHHHHHHHHHHhc
Q psy378 26 NYVNYDKIDPFADELPKEIEDVWATLCSC 54 (107)
Q Consensus 26 NNL~~yiTak~~De~p~Eie~lW~TL~~~ 54 (107)
++- +|++..+.+..+.+++++|+.|..+
T Consensus 38 ~~~-YYL~l~~~~~~~~~~~~~~a~l~EY 65 (98)
T 3jtp_A 38 ENR-YYLYVDFCDMTDEEVENQLSIMLEY 65 (98)
T ss_dssp TTE-EEEEEECCSCCTTHHHHHHHHHHHH
T ss_pred CCE-EEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 667 9999999986778899999998863
No 3
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=30.18 E-value=79 Score=20.19 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHhCCCcchhh
Q psy378 42 KEIEDVWATLCSCWPNNMKVIIRYLIIMSGMAPNQLL 78 (107)
Q Consensus 42 ~Eie~lW~TL~~~WPnNLrvILryLiimsg~sp~~LL 78 (107)
+|++.++..+........+.++. |...||+-+.+++
T Consensus 10 ~e~~~l~~~~~~~~~~~~~~~~~-l~~~tG~R~~E~~ 45 (170)
T 1aih_A 10 RDIYRLLAECDNSRNPDLGLIVR-ICLATGARWSEAE 45 (170)
T ss_dssp HHHHHHHHHHTTSSSTTHHHHHH-HHHHHCCCHHHHH
T ss_pred HHHHHHHHHHhcccchhHHHHHH-HHHHhCCcHHHHH
Confidence 78999998876543223444444 3345777776654
No 4
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=30.11 E-value=35 Score=26.21 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=15.7
Q ss_pred HHHHHHHHh-cCCCchHHHHHHHH
Q psy378 45 EDVWATLCS-CWPNNMKVIIRYLI 67 (107)
Q Consensus 45 e~lW~TL~~-~WPnNLrvILryLi 67 (107)
+++...|.. .||.|+|-.-+.+=
T Consensus 341 ~~a~~~l~~~~wpGNvreL~~~i~ 364 (387)
T 1ny5_A 341 KSAQELLLSYPWYGNVRELKNVIE 364 (387)
T ss_dssp HHHHHHHHHSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHH
Confidence 456666774 69999877655543
No 5
>4a5u_A RNA replicase polyprotein; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Turnip yellow mosaic virus}
Probab=25.68 E-value=30 Score=25.85 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=24.4
Q ss_pred CCCcChHHHHHHHHHHHhcCCCchHHHHHHHHHHhCCCcchh
Q psy378 36 FADELPKEIEDVWATLCSCWPNNMKVIIRYLIIMSGMAPNQL 77 (107)
Q Consensus 36 ~~De~p~Eie~lW~TL~~~WPnNLrvILryLiimsg~sp~~L 77 (107)
++..-+-..|+||.+||.--|.-|= -+=-|.--|+|.|-|
T Consensus 69 is~at~~s~~~LW~~Lc~~lPDSlL--~n~ei~~~GLSTDhl 108 (160)
T 4a5u_A 69 VSDQTKVSEEHLWESLQTILPDSQL--SNEETNTLGLSTEHL 108 (160)
T ss_dssp HHHHHCCCHHHHHHHHTTTSCGGGT--SSHHHHHHCCCHHHH
T ss_pred HhhccCCCHHHHHHHHHHhCchhhc--CchhhhhcCCcHHHH
Confidence 4443343468999999998887442 122244557777743
No 6
>1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Enterobacteria phage lambda} SCOP: d.163.1.1
Probab=24.95 E-value=75 Score=20.17 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHhcCCCchHHHHHHHHHHhCCCcchhh
Q psy378 41 PKEIEDVWATLCSCWPNNMKVIIRYLIIMSGMAPNQLL 78 (107)
Q Consensus 41 p~Eie~lW~TL~~~WPnNLrvILryLiimsg~sp~~LL 78 (107)
++|++.+|.++... +.-.+.++.++ ..||+-+.+++
T Consensus 6 ~~e~~~l~~~~~~~-~~~~~~~~~l~-~~tGlR~~E~~ 41 (179)
T 1ae9_A 6 ADEYLKIYQAAESS-PCWLRLAMELA-VVTGQRVGDLC 41 (179)
T ss_dssp HHHHHHHHHHGGGS-CHHHHHHHHHH-HHHCCCHHHHH
T ss_pred HHHHHHHHHHHhcC-cHHHHHHHHHH-HHhCchHHHHh
Confidence 37899999887543 32244444433 34677666554
No 7
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=24.24 E-value=54 Score=24.17 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=13.8
Q ss_pred HHHHHHHh-cCCCchHHHHHHH
Q psy378 46 DVWATLCS-CWPNNMKVIIRYL 66 (107)
Q Consensus 46 ~lW~TL~~-~WPnNLrvILryL 66 (107)
++...|.. +||.|+|-+.+.+
T Consensus 207 ~a~~~L~~~~wpGnvReL~~~l 228 (304)
T 1ojl_A 207 QAMDLLIHYDWPGNIRELENAI 228 (304)
T ss_dssp HHHHHHHHCCCSSHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHH
Confidence 44555655 5999988765543
No 8
>3pxi_a Adapter protein MECA 1; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=23.96 E-value=78 Score=21.15 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=23.5
Q ss_pred cceeEEEeecCCCcChHHHHHHHHHHHhc
Q psy378 26 NYVNYDKIDPFADELPKEIEDVWATLCSC 54 (107)
Q Consensus 26 NNL~~yiTak~~De~p~Eie~lW~TL~~~ 54 (107)
++- +|++..+.+..+.+++++|+.|..+
T Consensus 51 ~~~-YYL~l~~~~~~~~~~~~~~ail~EY 78 (111)
T 3pxi_a 51 ENR-YYLYVDFCNMTDEEVENQLSILLEY 78 (111)
T ss_dssp TTE-EEEEEEECSCCHHHHHHHHHHHHHH
T ss_pred CCE-EEEEEeeCCCCHHHHHHHHHHHHHh
Confidence 667 9999999886678899999988763
No 9
>1mn8_A Core protein P15; helical bundle, viral protein; 1.00A {Moloney murine leukemia virus} SCOP: a.61.1.6
Probab=23.43 E-value=85 Score=21.93 Aligned_cols=36 Identities=31% Similarity=0.721 Sum_probs=23.3
Q ss_pred HHHHHHHhc-CCC-----------chHHHHHHHHHHhCCCc--c-hhhhhh
Q psy378 46 DVWATLCSC-WPN-----------NMKVIIRYLIIMSGMAP--N-QLLNYL 81 (107)
Q Consensus 46 ~lW~TL~~~-WPn-----------NLrvILryLiimsg~sp--~-~LLpy~ 81 (107)
.=|.|||++ ||. |+.+|++-=-++-+-.+ . +=.||+
T Consensus 34 ~~w~tfC~~EWPtf~vGWP~eGTfn~~~I~~v~~~Vf~~g~~ghPDQvPYI 84 (100)
T 1mn8_A 34 RRWVTFCSAEWPTFNVGWPRDGTFNRDLITQVKIKVFSPGPHGHPDQVPYI 84 (100)
T ss_dssp HHHHHHHHTTGGGGCSSCCTTCCCCHHHHHHHHHHHTSCTTSSCGGGHHHH
T ss_pred CceEEEEecccCcCCCCCCCCCcccHHHHHHHHHhhcccCCCCCCccchhH
Confidence 569999974 764 89999886655532222 1 445665
No 10
>1uhu_A Product of riken cDNA 3110009E22; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.61.1.6
Probab=22.56 E-value=97 Score=21.83 Aligned_cols=37 Identities=27% Similarity=0.675 Sum_probs=25.3
Q ss_pred HHHHHHHHh-cCCC-----------chHHHHHHHHHHhCCCc--c-hhhhhh
Q psy378 45 EDVWATLCS-CWPN-----------NMKVIIRYLIIMSGMAP--N-QLLNYL 81 (107)
Q Consensus 45 e~lW~TL~~-~WPn-----------NLrvILryLiimsg~sp--~-~LLpy~ 81 (107)
+.=|.|||+ .||. |+.+|++-=-++-+-.| . +=.||+
T Consensus 33 k~~w~t~C~~EWPtf~vGWP~EGTfn~~iI~qV~~~VF~~gp~gHPDQvPYI 84 (105)
T 1uhu_A 33 KGPWRTFCASEWPTFDVGWPPEGTFDLTVIFEVKAIVFQDGPGSHPDQQPYI 84 (105)
T ss_dssp HHHHHHHHHHTSTTSSSSCCSSCCCCHHHHHHHHHHHTCSSTTSCTTTHHHH
T ss_pred cCceEEEEeeccCcCCCCCCCCCcccHHHHHHHHHHhccCCCCCCCcccchH
Confidence 467999997 4775 89999987766643333 2 445665
No 11
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=21.48 E-value=68 Score=22.24 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=14.5
Q ss_pred HHHHHHHH-hcCCCchHHHHHHH
Q psy378 45 EDVWATLC-SCWPNNMKVIIRYL 66 (107)
Q Consensus 45 e~lW~TL~-~~WPnNLrvILryL 66 (107)
+++...|+ .+||.|+|-+.+.+
T Consensus 211 ~~a~~~L~~~~~~gn~reL~~~l 233 (265)
T 2bjv_A 211 ERARETLLNYRWPGNIRELKNVV 233 (265)
T ss_dssp HHHHHHHHHSCCTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHH
Confidence 34556665 46999988665543
Done!