Query psy378
Match_columns 107
No_of_seqs 36 out of 38
Neff 2.5
Searched_HMMs 13730
Date Fri Aug 16 17:11:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy378.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/378hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ny5a2 c.37.1.20 (A:138-384) 59.3 3.7 0.00027 28.4 3.3 25 45-69 204-229 (247)
2 d1aiha_ d.163.1.1 (A:) Integra 47.6 13 0.00093 23.0 4.2 37 41-78 9-45 (170)
3 d1rlja_ c.23.5.7 (A:) Flavopro 44.9 9.2 0.00067 24.7 3.2 27 26-53 45-72 (135)
4 d1sxjc1 a.80.1.1 (C:239-333) R 41.1 13 0.00095 21.9 3.3 41 40-83 2-45 (95)
5 d1ykga1 c.23.5.2 (A:63-208) Su 34.2 12 0.00085 24.1 2.4 28 26-54 47-75 (146)
6 d1a0pa2 d.163.1.1 (A:111-292) 33.5 9.3 0.00068 23.0 1.7 37 42-79 6-44 (182)
7 d1sxjd1 a.80.1.1 (D:263-353) R 31.2 27 0.002 20.2 3.6 44 41-85 2-46 (91)
8 d1iqpa1 a.80.1.1 (A:233-327) R 26.5 34 0.0025 20.0 3.5 45 40-84 3-47 (95)
9 d1j6ua2 c.59.1.1 (A:296-446) U 25.1 36 0.0026 20.9 3.5 28 30-58 17-44 (151)
10 d1uhua_ a.61.1.6 (A:) Product 22.0 46 0.0033 21.8 3.7 37 46-82 34-85 (105)
11 d1j7qa_ a.39.1.5 (A:) Calcium 20.7 11 0.00082 24.0 0.3 9 47-55 73-81 (86)
No 1
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=59.30 E-value=3.7 Score=28.40 Aligned_cols=25 Identities=16% Similarity=0.188 Sum_probs=15.7
Q ss_pred HHHHHHHHh-cCCCchHHHHHHHHHH
Q psy378 45 EDVWATLCS-CWPNNMKVIIRYLIIM 69 (107)
Q Consensus 45 e~lW~TL~~-~WPnNLrvILryLiim 69 (107)
++.+..|.. .||.|++-.-+.+--+
T Consensus 204 ~~al~~L~~~~WPGNl~EL~~~l~~a 229 (247)
T d1ny5a2 204 KSAQELLLSYPWYGNVRELKNVIERA 229 (247)
T ss_dssp HHHHHHHHHSCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 356667776 5999966554444333
No 2
>d1aiha_ d.163.1.1 (A:) Integrase {Bacteriophage HP1 [TaxId: 10690]}
Probab=47.56 E-value=13 Score=23.02 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHhcCCCchHHHHHHHHHHhCCCcchhh
Q psy378 41 PKEIEDVWATLCSCWPNNMKVIIRYLIIMSGMAPNQLL 78 (107)
Q Consensus 41 p~Eie~lW~TL~~~WPnNLrvILryLiimsg~sp~~LL 78 (107)
++|++.+|.++-.+-..-++.++.++ .-||+-+.+++
T Consensus 9 ~eEi~~l~~~~~~~~~~~~~~~i~l~-~~tG~R~~E~~ 45 (170)
T d1aiha_ 9 ERDIYRLLAECDNSRNPDLGLIVRIC-LATGARWSEAE 45 (170)
T ss_dssp HHHHHHHHHHHTTSSSTTHHHHHHHH-HHHCCCHHHHH
T ss_pred HHHHHHHHHHhhhcCChhHHHHHHHH-HHHCCchhhhh
Confidence 37999999987664333566665544 44688776654
No 3
>d1rlja_ c.23.5.7 (A:) Flavoprotein NrdI {Bacillus subtilis [TaxId: 1423]}
Probab=44.88 E-value=9.2 Score=24.71 Aligned_cols=27 Identities=4% Similarity=-0.087 Sum_probs=23.1
Q ss_pred cceeEEEeecCCC-cChHHHHHHHHHHHh
Q psy378 26 NYVNYDKIDPFAD-ELPKEIEDVWATLCS 53 (107)
Q Consensus 26 NNL~~yiTak~~D-e~p~Eie~lW~TL~~ 53 (107)
..+ +.+|.+||+ |.|.+.+++|..|..
T Consensus 45 ~~~-ilitsT~G~Ge~P~~~~~F~~~l~~ 72 (135)
T d1rlja_ 45 TPF-VLVTYTTNFGQVPASTQSFLEKYAH 72 (135)
T ss_dssp SCE-EEEECCBGGGBCCHHHHHHHHHHGG
T ss_pred cce-EEEecCCCCCCCCHHHHHHHHhccc
Confidence 567 899999999 888999999997754
No 4
>d1sxjc1 a.80.1.1 (C:239-333) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=41.07 E-value=13 Score=21.94 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=28.9
Q ss_pred ChHHHHHHHHHHHhcCCCchHHHHHHHH---HHhCCCcchhhhhhhH
Q psy378 40 LPKEIEDVWATLCSCWPNNMKVIIRYLI---IMSGMAPNQLLNYLSM 83 (107)
Q Consensus 40 ~p~Eie~lW~TL~~~WPnNLrvILryLi---imsg~sp~~LLpy~Kr 83 (107)
||++|+++..++.. ++.......+- +-=|+|+.+++...-+
T Consensus 2 ~P~~I~~il~~~l~---~~f~~a~~~l~~l~~~~G~s~~dIl~~l~~ 45 (95)
T d1sxjc1 2 RPSDLKAVLKSILE---DDWGTAHYTLNKVRSAKGLALIDLIEGIVK 45 (95)
T ss_dssp CHHHHHHHHHHHHT---SCHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78999999999886 56666555553 3349999766655444
No 5
>d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=34.15 E-value=12 Score=24.14 Aligned_cols=28 Identities=18% Similarity=0.116 Sum_probs=23.4
Q ss_pred cceeEEEeecCCC-cChHHHHHHHHHHHhc
Q psy378 26 NYVNYDKIDPFAD-ELPKEIEDVWATLCSC 54 (107)
Q Consensus 26 NNL~~yiTak~~D-e~p~Eie~lW~TL~~~ 54 (107)
..+ +++|.+||| |.|.+.+.+|..|...
T Consensus 47 ~~~-i~~~sT~g~G~~P~~~~~f~~~l~~~ 75 (146)
T d1ykga1 47 KLL-IVVTSTQGEGEPPEEAVALHKFLFSK 75 (146)
T ss_dssp SEE-EEEEECBGGGBCCGGGHHHHHHHTST
T ss_pred cce-EEEEeecCCCcCchhHHHHHHHHHcc
Confidence 567 999999987 6778999999998543
No 6
>d1a0pa2 d.163.1.1 (A:111-292) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=33.51 E-value=9.3 Score=22.95 Aligned_cols=37 Identities=11% Similarity=0.290 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhcCCCchHH--HHHHHHHHhCCCcchhhh
Q psy378 42 KEIEDVWATLCSCWPNNMKV--IIRYLIIMSGMAPNQLLN 79 (107)
Q Consensus 42 ~Eie~lW~TL~~~WPnNLrv--ILryLiimsg~sp~~LLp 79 (107)
+|++.++++.....|..+|- ++. +...||+-+.+++.
T Consensus 6 eei~~ll~~~~~~~~~~lRd~~l~~-l~~~tG~R~~ei~~ 44 (182)
T d1a0pa2 6 AQVERLLQAPLIDQPLELRDKAMLE-VLYATGLRVSELVG 44 (182)
T ss_dssp HHHHHHHHCSCTTSHHHHHHHHHHH-HHHHHCCCHHHHTT
T ss_pred HHHHHHHhCcccCCcHHHHHHHHHH-HHHHhCCccCCccc
Confidence 78999988887767766653 332 33358888876653
No 7
>d1sxjd1 a.80.1.1 (D:263-353) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=31.20 E-value=27 Score=20.17 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=28.8
Q ss_pred hHH-HHHHHHHHHhcCCCchHHHHHHHHHHhCCCcchhhhhhhHHH
Q psy378 41 PKE-IEDVWATLCSCWPNNMKVIIRYLIIMSGMAPNQLLNYLSMKV 85 (107)
Q Consensus 41 p~E-ie~lW~TL~~~WPnNLrvILryLiimsg~sp~~LLpy~KrvV 85 (107)
|+| |+++|.++-..=-...+..++=+ +--|.|..+++-..-+++
T Consensus 2 P~~~i~~il~~~~~~~f~~a~~~i~~l-~~~Gys~~dIl~~l~~~v 46 (91)
T d1sxjd1 2 PHDILIEIVEKVKSGDFDEIKKYVNTF-MKSGWSAASVVNQLHEYY 46 (91)
T ss_dssp CSHHHHHHHHHHHSCCHHHHHHHHHHH-HHTSCCCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCHHHHHHHHHHHH
Confidence 655 89999998754333334444444 456999988887776554
No 8
>d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=26.52 E-value=34 Score=20.03 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHHHhcCCCchHHHHHHHHHHhCCCcchhhhhhhHH
Q psy378 40 LPKEIEDVWATLCSCWPNNMKVIIRYLIIMSGMAPNQLLNYLSMK 84 (107)
Q Consensus 40 ~p~Eie~lW~TL~~~WPnNLrvILryLiimsg~sp~~LLpy~Krv 84 (107)
+|+||.++=..+-..==...+.+++-+++--|+|+.+++...-+.
T Consensus 3 ~P~~I~~il~~~l~~~f~~a~~~l~~l~~~~G~s~~dIl~~l~~~ 47 (95)
T d1iqpa1 3 RPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKE 47 (95)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 688888876655542113334445555566799998877766543
No 9
>d1j6ua2 c.59.1.1 (A:296-446) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}
Probab=25.14 E-value=36 Score=20.94 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=24.0
Q ss_pred EEEeecCCCcChHHHHHHHHHHHhcCCCc
Q psy378 30 YDKIDPFADELPKEIEDVWATLCSCWPNN 58 (107)
Q Consensus 30 ~yiTak~~De~p~Eie~lW~TL~~~WPnN 58 (107)
+.+..-|+- ||.||+.+=.++-..+|++
T Consensus 17 ~~vidDyAH-~P~~i~a~l~a~r~~~~~~ 44 (151)
T d1j6ua2 17 IYVIDDYAH-TPDEIRNLLQTAKEVFENE 44 (151)
T ss_dssp EEEEEECCC-SHHHHHHHHHHHHHHCSSS
T ss_pred EEEEEECCC-CHHHHHHHHHHhhhhhccc
Confidence 566667998 9999999999999889985
No 10
>d1uhua_ a.61.1.6 (A:) Product of RIKEN cDNA 3110009e22 {Unclassified, murine endogenous retrovirus [TaxId: 12908]}
Probab=22.01 E-value=46 Score=21.77 Aligned_cols=37 Identities=27% Similarity=0.671 Sum_probs=25.4
Q ss_pred HHHHHHHh-cCCC-----------chHHHHHHHHHHhCCCcc---hhhhhhh
Q psy378 46 DVWATLCS-CWPN-----------NMKVIIRYLIIMSGMAPN---QLLNYLS 82 (107)
Q Consensus 46 ~lW~TL~~-~WPn-----------NLrvILryLiimsg~sp~---~LLpy~K 82 (107)
.=|.|+|. -||. |+.+|++.=.++-.-.+. +=.||+-
T Consensus 34 gkl~tfC~seWPtf~vgWP~eGTf~~~~I~~v~~~v~~~G~~gHpDqvPYI~ 85 (105)
T d1uhua_ 34 GPWRTFCASEWPTFDVGWPPEGTFDLTVIFEVKAIVFQDGPGSHPDQQPYIT 85 (105)
T ss_dssp HHHHHHHHHTSTTSSSSCCSSCCCCHHHHHHHHHHHTCSSTTSCTTTHHHHH
T ss_pred cceeeeecccCccCCCCCCCCCeechHHHHHHHHHhhcCCCCCCCCcCcchH
Confidence 35999996 4775 899999987777443332 3567753
No 11
>d1j7qa_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}
Probab=20.73 E-value=11 Score=23.97 Aligned_cols=9 Identities=67% Similarity=1.579 Sum_probs=8.1
Q ss_pred HHHHHHhcC
Q psy378 47 VWATLCSCW 55 (107)
Q Consensus 47 lW~TL~~~W 55 (107)
-|-|||+.|
T Consensus 73 ewltlcskw 81 (86)
T d1j7qa_ 73 EWLTLCSKW 81 (86)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 499999998
Done!