RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy378
         (107 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.9 bits (59), Expect = 1.4
 Identities = 14/77 (18%), Positives = 20/77 (25%), Gaps = 22/77 (28%)

Query: 9    NEPYRFRIKF-PPDGNRINYVNYDKI--DPFADELPKE---IEDVWATLCSCWPNNMKVI 62
            N P    I F    G RI   NY  +  +   D   K     +++     S         
Sbjct: 1667 NNPVNLTIHFGGEKGKRI-RENYSAMIFETIVDGKLKTEKIFKEINEHSTS--------- 1716

Query: 63   IRYLIIMSGMAPNQLLN 79
                          LL+
Sbjct: 1717 ----YTFRS--EKGLLS 1727


>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
           sliding clamp, AAA+ at polymerase, DNA-binding protein;
           HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
           a.80.1.1 c.37.1.20
          Length = 340

 Score = 26.2 bits (58), Expect = 2.6
 Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 2/70 (2%)

Query: 21  DGNRINYVNYDKIDPFADEL-PKEIEDVWATLCSCWPNNMKVIIRYLIIMSGMAPNQLLN 79
           D    + ++ D I        P +++ V  ++           +  +    G+A   L+ 
Sbjct: 220 DNPDEDEISDDVIYECCGAPRPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIE 279

Query: 80  YLSMKVIIRY 89
            +  K++  Y
Sbjct: 280 GIV-KILEDY 288


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.141    0.444 

Gapped
Lambda     K      H
   0.267   0.0708    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,752,146
Number of extensions: 97635
Number of successful extensions: 245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 7
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.5 bits)