RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy378
         (107 letters)



>d1iwma_ b.125.1.2 (A:) Outer membrane lipoprotein receptor LolB
           {Escherichia coli [TaxId: 562]}
          Length = 177

 Score = 25.7 bits (56), Expect = 1.1
 Identities = 7/41 (17%), Positives = 11/41 (26%), Gaps = 2/41 (4%)

Query: 5   LHSDNEPYRFRIKFPPDGNRINYVNYDKIDPFADELPKEIE 45
           L                  ++ Y  YD     A  +P  +E
Sbjct: 121 LDDQYRLSEITYSQNGKNWKVVYGGYDTKTQPA--MPANME 159


>d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus
          thermophilus [TaxId: 274]}
          Length = 273

 Score = 25.5 bits (55), Expect = 1.4
 Identities = 7/56 (12%), Positives = 21/56 (37%)

Query: 41 PKEIEDVWATLCSCWPNNMKVIIRYLIIMSGMAPNQLLNYLSMKVIIRYLIIMSGM 96
           +E+EDV+A   +    + + + R  ++++G         ++         +    
Sbjct: 43 KEEVEDVYAGCANQAGEDNRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAA 98


>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia
           coli [TaxId: 562]}
          Length = 265

 Score = 24.4 bits (52), Expect = 3.1
 Identities = 9/75 (12%), Positives = 23/75 (30%)

Query: 32  KIDPFADELPKEIEDVWATLCSCWPNNMKVIIRYLIIMSGMAPNQLLNYLSMKVIIRYLI 91
           + D  A   P  + ++W  L +C   +  ++++              N     V+I   +
Sbjct: 35  QGDALAVVFPGSLLELWRVLKACVTADKIILMQAANTGLTEGSTPNGNDYDRDVVIISTL 94

Query: 92  IMSGMAPNQLLNYTD 106
            +  +          
Sbjct: 95  RLDKLHVLGKGEQVL 109


>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus
           (Penicillium simplicissimum) [TaxId: 69488]}
          Length = 268

 Score = 24.3 bits (51), Expect = 3.9
 Identities = 7/46 (15%), Positives = 16/46 (34%)

Query: 27  YVNYDKIDPFADELPKEIEDVWATLCSCWPNNMKVIIRYLIIMSGM 72
            ++ D     A   P+ + DV + +      +  +    +   SG 
Sbjct: 58  VMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGY 103


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.141    0.444 

Gapped
Lambda     K      H
   0.267   0.0646    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 445,187
Number of extensions: 20586
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 15
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.1 bits)