BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3781
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 6 AQVEQADLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNK 63
AQ DL N L + + +FD +TS+ +L L N +Q+LP + N L L Y+NL N+
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 64 LETI--DIDFNFGHLRELNLSSNKFQQIPKCIF 94
L+++ + L+EL L++N+ Q +P +F
Sbjct: 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF 120
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 31 IRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQ 88
+ LDLSHN ++ LPP L LR L + +N LE +D N L+EL L +N+ QQ
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQ 522
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 31 IRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQ 88
+ LDLSHN ++ LPP L LR L + +N LE +D N L+EL L +N+ QQ
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQ 522
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 40/175 (22%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETI-- 67
+L YN+L +++ +FD +T + L L++N + +LP + + L L + L N+L+++
Sbjct: 65 NLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124
Query: 68 DIDFNFGHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKMQKLTVL 127
+ L+EL L++N+ Q IP F K+ L L
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAFD------------------------KLTNLQTL 160
Query: 128 DLSNNNIRKIPY----ELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRD 178
LS N ++ +P+ LG +L + L GN F R +IL +L ++R+
Sbjct: 161 SLSTNQLQSVPHGAFDRLG---KLQTITLFGNQFDCSRCEIL-----YLSQWIRE 207
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 40/175 (22%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETI-- 67
+L YN+L +++ +FD +T + L L++N + +LP + + L L + L N+L+++
Sbjct: 65 NLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124
Query: 68 DIDFNFGHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKMQKLTVL 127
+ L+EL L++N+ Q IP F K+ L L
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAFD------------------------KLTNLQTL 160
Query: 128 DLSNNNIRKIPY----ELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRD 178
LS N ++ +P+ LG +L + L GN F R + L +L ++R+
Sbjct: 161 SLSTNQLQSVPHGAFDRLG---KLQTITLFGNQFDCSRCETL-----YLSQWIRE 207
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 62/127 (48%), Gaps = 28/127 (22%)
Query: 16 NRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETI--DIDF 71
N+L + +FD + ++ EL L N +++LPP + + L L Y++L N+L+++ +
Sbjct: 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKMQKLTVLDLSN 131
L+EL L +N+ +++P+ F K+ +L L L N
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFD------------------------KLTELKTLKLDN 190
Query: 132 NNIRKIP 138
N ++++P
Sbjct: 191 NQLKRVP 197
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 37/150 (24%)
Query: 13 LSYNRLHVVNSKLFDITSIR---------ELDLSHNLIQNLPPDLLNLRHLVYMNLENNK 63
+ Y RL +N ++T ++ LDLSHN +Q+LP L L +++ N+
Sbjct: 53 MPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 112
Query: 64 LETIDIDF--NFGHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKM 121
L ++ + G L+EL L N+ + +P P L
Sbjct: 113 LTSLPLGALRGLGELQELYLKGNELKTLP------------------------PGLLTPT 148
Query: 122 QKLTVLDLSNNNIRKIPYELGLAQQLHHLN 151
KL L L+NNN+ ++P GL L +L+
Sbjct: 149 PKLEKLSLANNNLTELPA--GLLNGLENLD 176
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 37/150 (24%)
Query: 13 LSYNRLHVVNSKLFDITSIR---------ELDLSHNLIQNLPPDLLNLRHLVYMNLENNK 63
+ Y RL +N ++T ++ LDLSHN +Q+LP L L +++ N+
Sbjct: 52 MPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111
Query: 64 LETIDIDF--NFGHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKM 121
L ++ + G L+EL L N+ + +P P L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLP------------------------PGLLTPT 147
Query: 122 QKLTVLDLSNNNIRKIPYELGLAQQLHHLN 151
KL L L+NNN+ ++P GL L +L+
Sbjct: 148 PKLEKLSLANNNLTELPA--GLLNGLENLD 175
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 37/150 (24%)
Query: 13 LSYNRLHVVNSKLFDITSIR---------ELDLSHNLIQNLPPDLLNLRHLVYMNLENNK 63
+ Y RL +N ++T ++ LDLSHN +Q+LP L L +++ N+
Sbjct: 52 MPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111
Query: 64 LETIDIDF--NFGHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKM 121
L ++ + G L+EL L N+ + +P P L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLP------------------------PGLLTPT 147
Query: 122 QKLTVLDLSNNNIRKIPYELGLAQQLHHLN 151
KL L L+NNN+ ++P GL L +L+
Sbjct: 148 PKLEKLSLANNNLTELPA--GLLNGLENLD 175
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 37/150 (24%)
Query: 13 LSYNRLHVVNSKLFDITSIR---------ELDLSHNLIQNLPPDLLNLRHLVYMNLENNK 63
+ Y RL +N ++T ++ LDLSHN +Q+LP L L +++ N+
Sbjct: 52 MPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111
Query: 64 LETIDIDF--NFGHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKM 121
L ++ + G L+EL L N+ + +P P L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLP------------------------PGLLTPT 147
Query: 122 QKLTVLDLSNNNIRKIPYELGLAQQLHHLN 151
KL L L+NNN+ ++P GL L +L+
Sbjct: 148 PKLEKLSLANNNLTELPA--GLLNGLENLD 175
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 37/150 (24%)
Query: 13 LSYNRLHVVNSKLFDITSIR---------ELDLSHNLIQNLPPDLLNLRHLVYMNLENNK 63
+ Y RL +N ++T ++ LDLSHN +Q+LP L L +++ N+
Sbjct: 52 MPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111
Query: 64 LETIDIDF--NFGHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKM 121
L ++ + G L+EL L N+ + +P P L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLP------------------------PGLLTPT 147
Query: 122 QKLTVLDLSNNNIRKIPYELGLAQQLHHLN 151
KL L L+NNN+ ++P GL L +L+
Sbjct: 148 PKLEKLSLANNNLTELPA--GLLNGLENLD 175
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 71/163 (43%), Gaps = 10/163 (6%)
Query: 6 AQVEQADLSYNRLHVVNSKLFD-ITSIRELDLSHN-LIQNLPPDLLNLRHLVYMNLENNK 63
+ ++ D+S N+L S+ T ++ L++S N + +PP L L+ L Y++L NK
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENK 280
Query: 64 LETIDIDFNFGH---LRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQP-EKLV 119
DF G L L+LS N F F P + L+
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 120 KMQKLTVLDLSNNNIR-KIPYEL-GLAQQLHHLNLVGNCFKYP 160
KM+ L VLDLS N ++P L L+ L L+L N F P
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 33/142 (23%)
Query: 30 SIRELDLSHNLIQN-LPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELN---LSSNK 85
S+ LD+S+N++ +P ++ ++ +L +NL +N + I G LR LN LSSNK
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG-SIPDEVGDLRGLNILDLSSNK 691
Query: 86 FQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQ 145
P+ + + LT +DLSNNN+ E+G +
Sbjct: 692 LDG------------------------RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727
Query: 146 QL---HHLNLVGNC-FKYPRQD 163
LN G C + PR D
Sbjct: 728 TFPPAKFLNNPGLCGYPLPRCD 749
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 71/163 (43%), Gaps = 10/163 (6%)
Query: 6 AQVEQADLSYNRLHVVNSKLFD-ITSIRELDLSHN-LIQNLPPDLLNLRHLVYMNLENNK 63
+ ++ D+S N+L S+ T ++ L++S N + +PP L L+ L Y++L NK
Sbjct: 220 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENK 277
Query: 64 LETIDIDFNFGH---LRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQP-EKLV 119
DF G L L+LS N F F P + L+
Sbjct: 278 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 337
Query: 120 KMQKLTVLDLSNNNIR-KIPYEL-GLAQQLHHLNLVGNCFKYP 160
KM+ L VLDLS N ++P L L+ L L+L N F P
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 380
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 33/142 (23%)
Query: 30 SIRELDLSHNLIQN-LPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELN---LSSNK 85
S+ LD+S+N++ +P ++ ++ +L +NL +N + I G LR LN LSSNK
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG-SIPDEVGDLRGLNILDLSSNK 688
Query: 86 FQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQ 145
P+ + + LT +DLSNNN+ E+G +
Sbjct: 689 LDG------------------------RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 724
Query: 146 QL---HHLNLVGNC-FKYPRQD 163
LN G C + PR D
Sbjct: 725 TFPPAKFLNNPGLCGYPLPRCD 746
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 7 QVEQADLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLE 65
Q+ DL N+L V+ S +FD + ++EL + N + LP + L HL ++ L+ N+L+
Sbjct: 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148
Query: 66 TI 67
+I
Sbjct: 149 SI 150
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 30/155 (19%)
Query: 16 NRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETIDIDF-- 71
N++ + +FD + +++EL L N + LP + + L L ++L N+L +
Sbjct: 50 NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKMQKLTVLDLSN 131
HL+EL + NK ++P+ + ++ LT L L
Sbjct: 110 RLVHLKELFMCCNKLTELPR-------------------------GIERLTHLTHLALDQ 144
Query: 132 NNIRKIPY-ELGLAQQLHHLNLVGNCFKYPRQDIL 165
N ++ IP+ L H L GN + +DI+
Sbjct: 145 NQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIM 179
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 37/150 (24%)
Query: 13 LSYNRLHVVNSKLFDITSIR---------ELDLSHNLIQNLPPDLLNLRHLVYMNLENNK 63
+ Y RL +N ++T ++ LDLSHN +Q+LP L L +++ N+
Sbjct: 52 MPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111
Query: 64 LETIDIDF--NFGHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKM 121
L ++ + G L+EL L N+ + +P P L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLP------------------------PGLLTPT 147
Query: 122 QKLTVLDLSNNNIRKIPYELGLAQQLHHLN 151
KL L L+NN++ ++P GL L +L+
Sbjct: 148 PKLEKLSLANNDLTELPA--GLLNGLENLD 175
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQ-NLPPDLLN-LRHLVYMNLENNKLETID 68
D+S+ V + +F+ ++S+ L ++ N Q N PD+ LR+L +++L +LE +
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486
Query: 69 -IDFN-FGHLRELNLSSNKFQQIPKCIF 94
FN L+ LN++SN+ + +P IF
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDGIF 514
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Query: 28 ITSIRELDLSHNLIQN--LPPDLLNLRHLVYMNLENNKLETI 67
+ +++EL+++HNLIQ+ LP NL +L +++L +NK+++I
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 33/164 (20%)
Query: 7 QVEQADLSYNRLH---VVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNK 63
+E DLS N L + F TS++ LDLS N + + + L L L +++ +++
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407
Query: 64 LET-------------IDIDFNFGHLR--------------ELNLSSNKFQQ--IPKCIF 94
L+ I +D + H R L ++ N FQ+ +P IF
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IF 466
Query: 95 HXXXXXXXXXXXXXXXXXXQPEKLVKMQKLTVLDLSNNNIRKIP 138
P + L VL++++N ++ +P
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 4 KEAQVEQADLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPP----DLLNLRHL 54
K + Q DLSYN LH V + F + S+R L L +N IQ L P L NLR+L
Sbjct: 246 KWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYL 301
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 34 LDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDIDFNFG----------HLRELNLS 82
LDLS+N I N+ DLL L +L ++ ++N L + N G HL LNL
Sbjct: 485 LDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLE 544
Query: 83 SNKFQQIPKCIF 94
SN +IP +F
Sbjct: 545 SNGLDEIPVGVF 556
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 114 QPEKLVKMQKLTVLDLSNNNIRKIPYEL 141
P ++ LT+LDLSNNNI I +L
Sbjct: 472 SPSPFRPLRNLTILDLSNNNIANINEDL 499
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 35/140 (25%)
Query: 13 LSYNRLHVVNSKLFDITSIR---------ELDLSHNLIQNLPPDLLNLRHLVYMNLENNK 63
+ Y RL +N ++T ++ LDLSHN +Q+LP L L +++ N+
Sbjct: 52 MPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111
Query: 64 LETIDIDF--NFGHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKM 121
L ++ + G L+EL L N+ + +P P L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLP------------------------PGLLTPT 147
Query: 122 QKLTVLDLSNNNIRKIPYEL 141
KL L L+NN + ++P L
Sbjct: 148 PKLEKLSLANNQLTELPAGL 167
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 37/150 (24%)
Query: 13 LSYNRLHVVNSKLFDITSIR---------ELDLSHNLIQNLPPDLLNLRHLVYMNLENNK 63
+ Y RL +N ++T ++ LDLSHN +Q+LP L L +++ N+
Sbjct: 52 MPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111
Query: 64 LETIDIDF--NFGHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKM 121
L ++ + G L+EL L N+ + +P P L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLP------------------------PGLLTPT 147
Query: 122 QKLTVLDLSNNNIRKIPYELGLAQQLHHLN 151
KL L L+NN + ++P GL L +L+
Sbjct: 148 PKLEKLSLANNQLTELPA--GLLNGLENLD 175
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 35/140 (25%)
Query: 13 LSYNRLHVVNSKLFDITSIR---------ELDLSHNLIQNLPPDLLNLRHLVYMNLENNK 63
+ Y RL +N ++T ++ LDLSHN +Q+LP L L +++ N+
Sbjct: 52 MPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111
Query: 64 LETIDIDF--NFGHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKM 121
L ++ + G L+EL L N+ + +P P L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLP------------------------PGLLTPT 147
Query: 122 QKLTVLDLSNNNIRKIPYEL 141
KL L L+NN + ++P L
Sbjct: 148 PKLEKLSLANNQLTELPAGL 167
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 37/150 (24%)
Query: 13 LSYNRLHVVNSKLFDITSIR---------ELDLSHNLIQNLPPDLLNLRHLVYMNLENNK 63
+ Y RL +N ++T ++ LDLSHN +Q+LP L L +++ N+
Sbjct: 52 MPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111
Query: 64 LETIDIDF--NFGHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKM 121
L ++ + G L+EL L N+ + +P P L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLP------------------------PGLLTPT 147
Query: 122 QKLTVLDLSNNNIRKIPYELGLAQQLHHLN 151
KL L L+NN + ++P GL L +L+
Sbjct: 148 PKLEKLSLANNQLTELPA--GLLNGLENLD 175
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 16 NRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETI--DIDF 71
N+L + +FD +T++ L+L+HN +Q+LP + + L +L ++L N+L+++ +
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD 178
Query: 72 NFGHLRELNLSSNKFQQIPKCIF 94
L++L L N+ + +P +F
Sbjct: 179 KLTQLKDLRLYQNQLKSVPDGVF 201
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETI 67
+L++N+L + +FD +T++ ELDLS+N +Q+LP + + L L + L N+L+++
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 29 TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDIDFNFG--HLRELNLSSNK 85
+S+R LDLSH + +L + L+ L +NL NK+ I + +G +L+ LNLS N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325
Query: 86 FQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKMQKLTVLDLSNNNIRKIPY 139
++ F+ Q + ++KL LDL +N + I +
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF 379
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 20/105 (19%)
Query: 1 MIAKEAQVEQADLSYNRLHVVNSKLFDIT-----SIRELDLSHNLIQN-----LPPDLLN 50
M + +E D+S N L NS +D T SI L+LS N++ LPP +
Sbjct: 398 MTKNMSSLETLDVSLNSL---NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKV-- 452
Query: 51 LRHLVYMNLENNKLETIDIDFN-FGHLRELNLSSNKFQQIPKCIF 94
++L NN++ +I D L+ELN++SN+ + +P +F
Sbjct: 453 ----KVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVF 493
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 28 ITSIRELDLSHNLIQNLPPDLLNL-RHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKF 86
++ +R L LSHN I++L + + L Y+++ +N+L+ I LR L+LS N F
Sbjct: 75 LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC-CPMASLRHLDLSFNDF 133
Query: 87 QQIPKC 92
+P C
Sbjct: 134 DVLPVC 139
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 123 KLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRD 178
K+ VLDL NN I IP ++ Q L LN+ N K + + T +L D
Sbjct: 451 KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 13 LSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF- 71
L+ N L + +++ +++++R LDLSHN + +LP +L + L Y +N + T+ +F
Sbjct: 254 LNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFG 313
Query: 72 NFGHLRELNLSSNKFQQ 88
N +L+ L + N ++
Sbjct: 314 NLCNLQFLGVEGNPLEK 330
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 68/176 (38%), Gaps = 27/176 (15%)
Query: 8 VEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETI 67
+++ D NR+ + +D LDLS+ I N+ ++ L + L N L +
Sbjct: 203 IDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTEL 262
Query: 68 DIDF-NFGHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKMQKLTV 126
+ N +LR L+LS N+ +P +L +L
Sbjct: 263 PAEIKNLSNLRVLDLSHNRLTSLPA-------------------------ELGSCFQLKY 297
Query: 127 LDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDIL-QKGTPFLLSYLRDKLP 181
+N + +P+E G L L + GN + IL +K L+ YLRD P
Sbjct: 298 FYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP 353
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 1 MIAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLE 60
+ A +E +L YN ++ V ++ ++ LDLS N + + P+ + + +++L
Sbjct: 164 LAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222
Query: 61 NNKLETIDIDFNFG-HLRELNLSSNKF 86
NNKL I+ F +L +L N F
Sbjct: 223 NNKLVLIEKALRFSQNLEHFDLRGNGF 249
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 1 MIAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLE 60
+ A +E +L YN ++ V ++ ++ LDLS N + + P+ + + +++L
Sbjct: 164 LAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222
Query: 61 NNKLETIDIDFNFGH-LRELNLSSNKF 86
NNKL I+ F L +L N F
Sbjct: 223 NNKLVLIEKALRFSQNLEHFDLRGNGF 249
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.1 bits (74), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 25/130 (19%)
Query: 13 LSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
LS+N L+ ++S+ F + ++R LDLS N + L L +L+ L + L NN + +D +
Sbjct: 71 LSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN 130
Query: 71 F--NFGHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKMQKLTVLD 128
+ L++L LS N+ + P + K+ KL +LD
Sbjct: 131 AFEDMAQLQKLYLSQNQISRFPVELIKDGN---------------------KLPKLMLLD 169
Query: 129 LSNNNIRKIP 138
LS+N ++K+P
Sbjct: 170 LSSNKLKKLP 179
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 34/132 (25%)
Query: 13 LSYNRLHVVNSKLFDITSIRELDLSHNLIQNLP----PDLLNLRHLVYMNLENNKLETI- 67
L N+LH + S L ++T++ L L+ N +Q+LP L NL+ LV L N+L+++
Sbjct: 70 LGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV---LVENQLQSLP 125
Query: 68 DIDFN-FGHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKMQKLTV 126
D F+ +L L L N+ Q +PK +F K+ LT
Sbjct: 126 DGVFDKLTNLTYLYLYHNQLQSLPKGVFD------------------------KLTNLTR 161
Query: 127 LDLSNNNIRKIP 138
LDL NN ++ +P
Sbjct: 162 LDLDNNQLQSLP 173
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 17 RLHVVNSKLFDITSIRELD------LSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID 70
+++ N++L DIT ++ L +++N I ++ P L NL +L + L NN++ ID
Sbjct: 67 QINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPL 125
Query: 71 FNFGHLRELNLSSNKFQQI 89
N +L L LSSN I
Sbjct: 126 KNLTNLNRLELSSNTISDI 144
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 23 SKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLS 82
S L +T++ L+L+ N ++++ P + NL++L Y+ L N + I + L+ L S
Sbjct: 276 SPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFS 334
Query: 83 SNKFQQI 89
+NK +
Sbjct: 335 NNKVSDV 341
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 22 NSKLFDITSIRELDLSHNLIQNLPPDLLNL-RHLVYMNLENNKLETIDIDFNFGHLRELN 80
S + ++ +R L +SHN IQ L + + L Y++L +NKL I +L+ L+
Sbjct: 38 TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTV-NLKHLD 96
Query: 81 LSSNKFQQIPKC 92
LS N F +P C
Sbjct: 97 LSFNAFDALPIC 108
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 16/103 (15%)
Query: 1 MIAKEAQVEQADLSYNRLHVVNSKLFDIT---SIRELDLSHNLIQN-----LPPDLLNLR 52
M + ++Q D+S N + + K D + S+ L++S N++ + LPP
Sbjct: 369 MTTQMKSLQQLDISQNSVSY-DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP------ 421
Query: 53 HLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQQIPKCIF 94
+ ++L +NK+++I L+ELN++SN+ + +P IF
Sbjct: 422 RIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIF 464
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 123 KLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGT 169
++ VLDL +N I+ IP ++ + L LN+ N K I + T
Sbjct: 422 RIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLT 468
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 17 RLHVVNSKLFDITSIRELD------LSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID 70
+++ N++L DIT ++ L +++N I ++ P L NL +L + L NN++ ID
Sbjct: 72 QINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPL 130
Query: 71 FNFGHLRELNLSSNKFQQI 89
N +L L LSSN I
Sbjct: 131 KNLTNLNRLELSSNTISDI 149
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 17 RLHVVNSKLFDITSIRELD------LSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID 70
+++ N++L DIT ++ L +++N I ++ P L NL +L + L NN++ ID
Sbjct: 67 QINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPL 125
Query: 71 FNFGHLRELNLSSNKFQQI 89
N +L L LSSN I
Sbjct: 126 KNLTNLNRLELSSNTISDI 144
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 23 SKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLS 82
S L +T++ L+L+ N ++++ P + NL++L Y+ L N + I + L+ L S
Sbjct: 277 SPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFS 335
Query: 83 SNKFQQI 89
+NK +
Sbjct: 336 NNKVSDV 342
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 17 RLHVVNSKLFDITSIRELD------LSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID 70
+++ N++L DIT ++ L +++N I ++ P L NL +L + L NN++ ID
Sbjct: 71 QINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPL 129
Query: 71 FNFGHLRELNLSSNKFQQI 89
N +L L LSSN I
Sbjct: 130 KNLTNLNRLELSSNTISDI 148
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 23 SKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLS 82
S L +T++ L+L+ N ++++ P + NL++L Y+ L N + I + L+ L +
Sbjct: 280 SPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFA 338
Query: 83 SNKFQQI 89
+NK +
Sbjct: 339 NNKVSDV 345
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 17 RLHVVNSKLFDITSIRELD------LSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID 70
+++ N++L DIT ++ L +++N I ++ P L NL +L + L NN++ ID
Sbjct: 67 QINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPL 125
Query: 71 FNFGHLRELNLSSNKFQQI 89
N +L L LSSN I
Sbjct: 126 KNLTNLNRLELSSNTISDI 144
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 6/136 (4%)
Query: 23 SKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLS 82
+ L ++T++ L L +N I ++ P L NL +L + L +N + I L++LN S
Sbjct: 101 TPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFS 159
Query: 83 SNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKMQKLTVLDLSNNNIRKIPYELG 142
SN+ + K + + KL ++ L +NN I I LG
Sbjct: 160 SNQVTDL-KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIA---TNNQISDI-TPLG 214
Query: 143 LAQQLHHLNLVGNCFK 158
+ L L+L GN K
Sbjct: 215 ILTNLDELSLNGNQLK 230
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 17 RLHVVNSKLFDITSIRELD------LSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID 70
+++ N++L DIT ++ L +++N I ++ P L NL +L + L NN++ ID
Sbjct: 67 QINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPL 125
Query: 71 FNFGHLRELNLSSNKFQQI 89
N +L L LSSN I
Sbjct: 126 KNLTNLNRLELSSNTISDI 144
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 17 RLHVVNSKLFDITSIRELD------LSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID 70
+++ N++L DIT ++ L +++N I ++ P L NL +L + L NN++ ID
Sbjct: 67 QINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPL 125
Query: 71 FNFGHLRELNLSSNKFQQI 89
N +L L LSSN I
Sbjct: 126 KNLTNLNRLELSSNTISDI 144
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 10/75 (13%)
Query: 14 SYNRLHVVNSKL-------FD-ITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKL 64
S +L V+NS++ FD + S+ EL+L+HN + +LP DL LR+LV ++L +N
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302
Query: 65 ET-IDIDFNFGHLRE 78
DI + LRE
Sbjct: 303 NCDCDILWLAWWLRE 317
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 83/210 (39%), Gaps = 44/210 (20%)
Query: 6 AQVEQADLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLP-------PDLL-------- 49
A + +L N L V+ S F+ ++ +REL L +N I+++P P L+
Sbjct: 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK 182
Query: 50 -----------NLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHXXX 98
L +L Y+NL ++ + L EL +S N F +I FH
Sbjct: 183 KLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLS 242
Query: 99 XXXXXXXXXXXXXXXQPEKLVKMQKLTVLDLSNNNIRKIPYELG------LAQQLHHLNL 152
+ + L L+L++NN+ +P++L + LHH
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302
Query: 153 VGNCFKYPRQDILQKGTPFLLSYLRDKLPS 182
+C DIL +L +LR+ +P+
Sbjct: 303 NCDC------DIL-----WLAWWLREYIPT 321
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Query: 28 ITSIRELDLSHNLIQN--LPPDLLNLRHLVYMNLENNKLETI 67
+ +++EL+++HNLIQ+ LP NL +L +++L +NK+++I
Sbjct: 147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Query: 28 ITSIRELDLSHNLIQN--LPPDLLNLRHLVYMNLENNKLETI 67
+ +++EL+++HNLIQ+ LP NL +L +++L +NK+++I
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 8 VEQADLSYNRLH---VVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKL 64
+E DLS N L + F TS++ LDLS N + + + L L L +++ +++ L
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 65 ETIDIDFNFGHLREL 79
+ + F LR L
Sbjct: 409 KQMSEFSVFLSLRNL 423
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Query: 28 ITSIRELDLSHNLIQN--LPPDLLNLRHLVYMNLENNKLETI 67
+ +++EL+++HNLIQ+ LP NL +L +++L +NK+++I
Sbjct: 124 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 55/136 (40%), Gaps = 15/136 (11%)
Query: 12 DLSYNRL-HVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
DLS+N L H+ + F ++ LDLS IQ + +L HL + L N ++++ +
Sbjct: 35 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 94
Query: 70 DFNFGHLR--------ELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKM 121
F L E NL+S + P I H PE +
Sbjct: 95 G-AFSGLSSLQKLVAVETNLAS--LENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNL 149
Query: 122 QKLTVLDLSNNNIRKI 137
L LDLS+N I+ I
Sbjct: 150 TNLEHLDLSSNKIQSI 165
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 13 LSYNRLHVVNSKLFDITSIRELDLSHNLIQN--LPPDLLNLRHLVYMNLENNKLETI 67
L N + N + + +++EL+++HNLIQ+ LP NL +L +++L +NK+++I
Sbjct: 110 LETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Query: 28 ITSIRELDLSHNLIQN--LPPDLLNLRHLVYMNLENNKLETI 67
+ +++EL+++HNLIQ+ LP NL +L +++L +NK+++I
Sbjct: 124 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 55/136 (40%), Gaps = 15/136 (11%)
Query: 12 DLSYNRL-HVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
DLS+N L H+ + F ++ LDLS IQ + +L HL + L N ++++ +
Sbjct: 35 DLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 94
Query: 70 DFNFGHLR--------ELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKM 121
F L E NL+S + P I H PE +
Sbjct: 95 G-AFSGLSSLQKLVAVETNLAS--LENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNL 149
Query: 122 QKLTVLDLSNNNIRKI 137
L LDLS+N I+ I
Sbjct: 150 TNLEHLDLSSNKIQSI 165
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Query: 28 ITSIRELDLSHNLIQN--LPPDLLNLRHLVYMNLENNKLETI 67
+ +++EL+++HNLIQ+ LP NL +L +++L +NK+++I
Sbjct: 125 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 55/136 (40%), Gaps = 15/136 (11%)
Query: 12 DLSYNRL-HVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
DLS+N L H+ + F ++ LDLS IQ + +L HL + L N ++++ +
Sbjct: 36 DLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 95
Query: 70 DFNFGHLR--------ELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKM 121
F L E NL+S + P I H PE +
Sbjct: 96 G-AFSGLSSLQKLVAVETNLAS--LENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNL 150
Query: 122 QKLTVLDLSNNNIRKI 137
L LDLS+N I+ I
Sbjct: 151 TNLEHLDLSSNKIQSI 166
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Query: 28 ITSIRELDLSHNLIQN--LPPDLLNLRHLVYMNLENNKLETI 67
+ +++EL+++HNLIQ+ LP NL +L +++L +NK+++I
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 31 IRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID--FNFGHLRELNLSSNKFQQ 88
+ EL L N +P +L N +HL ++L NN++ T+ N L L LS N+ +
Sbjct: 33 VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 89 IP 90
IP
Sbjct: 93 IP 94
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 13 LSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETIDID 70
LSYNRL + + FD + S+R L L N I +P N L L ++ + N L D
Sbjct: 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY---CD 141
Query: 71 FNFGHLRELNLSSNKFQQIPKC 92
N L + S K I +C
Sbjct: 142 CNMQWLSDWVKSEYKEPGIARC 163
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETI 67
DLS NR+ ++++ F ++T + L LS+N ++ +PP + L+ L ++L N + +
Sbjct: 60 DLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV 117
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 30/124 (24%)
Query: 11 ADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID 70
A++SYN L S L ++ ELD SHN I N+ +N+ L + L++N L
Sbjct: 197 ANVSYNLL----STLAIPIAVEELDASHNSI-NVVRGPVNV-ELTILKLQHNNLTDTAWL 250
Query: 71 FNFGHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKMQKLTVLDLS 130
N+ L E++LS N+ ++I ++H VKMQ+L L +S
Sbjct: 251 LNYPGLVEVDLSYNELEKI---MYH---------------------PFVKMQRLERLYIS 286
Query: 131 NNNI 134
NN +
Sbjct: 287 NNRL 290
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 13 LSYNRLHVVNSKLFDIT-----SIRELDLSHNLIQNLP-PDLLNLRHLVYMNLENNKLET 66
L N L + +KL I ++ EL L HN IQ + DLL L + L +N++
Sbjct: 172 LKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231
Query: 67 ID---IDFNFGHLRELNLSSNKFQQIP 90
I+ + F LREL+L +NK ++P
Sbjct: 232 IENGSLSF-LPTLRELHLDNNKLSRVP 257
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.4 bits (67), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 19 HVVNSKLFDITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETIDIDFNFGH-- 75
H+ + L D+ ++ L+L N I+ +P L + L +L + +NKL + FG
Sbjct: 137 HIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLRQMPRGI-FGKMP 194
Query: 76 -LRELNLSSNKFQQIPKCIF 94
L++LNL+SN+ + +P IF
Sbjct: 195 KLKQLNLASNQLKSVPDGIF 214
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 30/125 (24%)
Query: 10 QADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDI 69
A++SYN L S L ++ ELD SHN I N+ +N+ L + L++N L
Sbjct: 190 HANVSYNLL----STLAIPIAVEELDASHNSI-NVVRGPVNVE-LTILKLQHNNLTDTAW 243
Query: 70 DFNFGHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKMQKLTVLDL 129
N+ L E++LS N+ ++I ++H VKMQ+L L +
Sbjct: 244 LLNYPGLVEVDLSYNELEKI---MYH---------------------PFVKMQRLERLYI 279
Query: 130 SNNNI 134
SNN +
Sbjct: 280 SNNRL 284
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Query: 41 IQNLPPDLLN-LRHLVYMNLENNKLETIDI-DFNFGH-LRELNLSSNKFQQIPKCIFHXX 97
++ LP LL+ R + +NL + ++E ID F + H +++L + N + +P +F
Sbjct: 57 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116
Query: 98 XXXXXXXXXXXXXXXXQPEKLVKMQKLTVLDLSNNNIRKI 137
KLT L +SNNN+ +I
Sbjct: 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 156
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 29 TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQ 88
T + L + +N I +L P L NL L ++ + N++ I+ + L+ LN+ SN+
Sbjct: 221 TRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISD 279
Query: 89 I 89
I
Sbjct: 280 I 280
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 61/184 (33%), Gaps = 49/184 (26%)
Query: 3 AKEAQVEQA-DLSYNRLHVVNSKLFD--------ITSIRELDLSHNLIQNLPPDLLNLRH 53
AK V A D SYN + V+ K FD ++ ++LS+N I P +L +
Sbjct: 398 AKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457
Query: 54 -LVYMNLENNKLETI-------------------DIDFNFGHLREL-------------- 79
L +NL N L I ID F L +L
Sbjct: 458 PLSSINLXGNXLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVG 517
Query: 80 -NLSSNKFQQIP-----KCIFHXXXXXXXXXXXXXXXXXXQPEKLVKMQKLTVLDLSNNN 133
+LS N F + P PE + LT L + +N+
Sbjct: 518 IDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577
Query: 134 IRKI 137
IRK+
Sbjct: 578 IRKV 581
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 124 LTVLDLSNNNIRKIPYEL-GLAQQLHHLNLVGN 155
++ ++LSNN I K P EL L +NL GN
Sbjct: 435 VSSINLSNNQISKFPKELFSTGSPLSSINLXGN 467
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 13 LSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETIDID 70
L+ N ++ + F + S+ LDLS+N + NL L L ++NL N +T+
Sbjct: 83 LTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET 142
Query: 71 FNFGHLRELNL 81
F HL +L +
Sbjct: 143 SLFSHLTKLQI 153
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 13 LSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETIDID 70
L+ N ++ + F + S+ LDLS+N + NL L L ++NL N +T+
Sbjct: 57 LTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET 116
Query: 71 FNFGHLRELNL 81
F HL +L +
Sbjct: 117 SLFSHLTKLQI 127
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
Query: 28 ITSIRELDLSHNLIQN--LPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRE 78
+ ++++L+++HN I + LP NL +LV+++L N ++TI ++ + LRE
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN-DLQFLRE 178
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
Query: 28 ITSIRELDLSHNLIQN--LPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRE 78
+ ++++L+++HN I + LP NL +LV+++L N ++TI ++ + LRE
Sbjct: 122 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN-DLQFLRE 173
>pdb|2QW5|A Chain A, Crystal Structure Of A Putative Sugar Phosphate
IsomeraseEPIMERASE (Ava4194) From Anabaena Variabilis
Atcc 29413 At 1.78 A Resolution
pdb|2QW5|B Chain B, Crystal Structure Of A Putative Sugar Phosphate
IsomeraseEPIMERASE (Ava4194) From Anabaena Variabilis
Atcc 29413 At 1.78 A Resolution
Length = 335
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 12 DLSYNRL---HVVNSKLFDITSIRELDLSHNLIQNLPPDL---LNLRHLVYMNLENNKLE 65
+L Y R+ H+ + F + E ++ L +N DL NLRH L++ LE
Sbjct: 26 NLDYRRIVVAHIKKLQRFGYSGF-EFPIAPGLPENYAQDLENYTNLRHY----LDSEGLE 80
Query: 66 TIDIDFNFGHLRELNLSSNKFQQ 88
+ I N G R + SSN +Q
Sbjct: 81 NVKISTNVGATRTFDPSSNYPEQ 103
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 30 SIRELDLSHNLIQNL-PPDLLNLRHLVYMNLENNKLETIDID--FNFGHLRELNLSSNKF 86
S+ EL L N I + L L +L + L N + +D N HLREL+L++NK
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 87 QQIP 90
++P
Sbjct: 253 VKVP 256
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 12 DLSYNRLHVV-NSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETID 68
LS+N + V N L + +REL L++N + +P L + +++ + L NN + I
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 279
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 30 SIRELDLSHNLIQNL-PPDLLNLRHLVYMNLENNKLETIDID--FNFGHLRELNLSSNKF 86
S+ EL L N I + L L +L + L N + +D N HLREL+L++NK
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 87 QQIP 90
++P
Sbjct: 253 VKVP 256
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 12 DLSYNRLHVV-NSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETID 68
LS+N + V N L + +REL L++N + +P L + +++ + L NN + I
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 279
>pdb|2KR9|A Chain A, Kalirin Dh1 Nmr Structure
Length = 190
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 20/92 (21%)
Query: 6 AQVEQADLSYNR-LH-VVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNK 63
A++ Q + +Y R LH + + L+++TS ++ +PP +LN H+++ N++
Sbjct: 18 AELLQTEKAYVRDLHECLETYLWEMTSG---------VEEIPPGILNKEHIIFGNIQ--- 65
Query: 64 LETIDIDFNFGHLRELNLSSNKFQQIPKCIFH 95
E D N L+EL K++Q+P+ + H
Sbjct: 66 -EIYDFHNNI-FLKEL----EKYEQLPEDVGH 91
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 27/153 (17%)
Query: 16 NRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLN------------------------ 50
NRL V ++ F+ ++ +REL L +N I+++P N
Sbjct: 93 NRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAF 152
Query: 51 --LRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXX 108
L +L Y+NL L+ I L EL LS N+ I F
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA 212
Query: 109 XXXXXQPEKLVKMQKLTVLDLSNNNIRKIPYEL 141
+ ++ L L+LS+NN+ +P++L
Sbjct: 213 QVATIERNAFDDLKSLEELNLSHNNLMSLPHDL 245
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 9/49 (18%)
Query: 27 DITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGH 75
D+ S+ EL+LSHN + +LP DL H +LE + ++ N H
Sbjct: 224 DLKSLEELNLSHNNLMSLPHDLFTPLH---------RLERVHLNHNPWH 263
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 77/202 (38%), Gaps = 48/202 (23%)
Query: 16 NRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLN------------------------ 50
NRL V ++ F+ ++ +REL L +N I+++P N
Sbjct: 93 NRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAF 152
Query: 51 --LRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXX 108
L +L Y+NL L+ I L EL LS N+ I F
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA 212
Query: 109 XXXXXQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLV--------GNCFKYP 160
+ ++ L L+LS+NN+ +P++ L LH L V NC
Sbjct: 213 QVATIERNAFDDLKSLEELNLSHNNLMSLPHD--LFTPLHRLERVHLNHNPWHCNC---- 266
Query: 161 RQDILQKGTPFLLSYLRDKLPS 182
D+L +L +L++ +PS
Sbjct: 267 --DVL-----WLSWWLKETVPS 281
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 46/113 (40%), Gaps = 27/113 (23%)
Query: 29 TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID-FN-FGHLRELNLSSNK 85
T+ R L+L N IQ + + +LRHL + L N + TI+I FN +L L L N+
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 86 FQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKMQKLTVLDLSNNNIRKIP 138
IP F V + KL L L NN I IP
Sbjct: 124 LTTIPNGAF------------------------VYLSKLKELWLRNNPIESIP 152
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 4 KEAQVEQADLSYNRLH---VVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLE 60
K Q+ + LS N L + F TS++ LDLS N + + + L L L +++ +
Sbjct: 50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 109
Query: 61 NNKLETIDIDFNFGHLREL 79
++ L+ + F LR L
Sbjct: 110 HSNLKQMSEFSVFLSLRNL 128
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 33 ELDLSHNLIQNLPPDLL--NLRHLVYMNLENNKLETIDIDFNFG--HLRELNLSSNKFQQ 88
EL L+ N + + D L L HLV + L+ N+L I+ + G H++EL L NK ++
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 89 IPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKMQKLTVLDLSNN 132
I +F P + LT L+L++N
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 11/75 (14%)
Query: 17 RLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHL 76
RL + L ++ ++RELDLSH+ I+ L LR+L + L+++++ +N
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH-------LQSLNLSYN---- 386
Query: 77 RELNLSSNKFQQIPK 91
L+L + F++ P+
Sbjct: 387 EPLSLKTEAFKECPQ 401
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 5 EAQVEQADLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNK 63
E VE +L + ++S F + ++ELDL+ + LP L+ L L + L NK
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK 312
Query: 64 LETI 67
E +
Sbjct: 313 FENL 316
>pdb|2XNX|M Chain M, Bc1 Fragment Of Streptococcal M1 Protein In Complex With
Human Fibrinogen
pdb|2XNX|N Chain N, Bc1 Fragment Of Streptococcal M1 Protein In Complex With
Human Fibrinogen
Length = 146
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 8 VEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNL-RHLVYMNLENNKLET 66
++QA YNR +V+ +L IT RE +++ NL+ N +L L + +E KLE
Sbjct: 51 IDQASQDYNRANVLEKELEAIT--REQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEE 108
Query: 67 ID--IDFNFGHL-RELNLSSNKFQQIPKCIFH 95
D + L R+L+ S +Q+ K +
Sbjct: 109 EKQISDASRQSLRRDLDASREAKKQVEKDLLE 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,765,624
Number of Sequences: 62578
Number of extensions: 165397
Number of successful extensions: 714
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 250
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)