Query psy3781
Match_columns 183
No_of_seqs 143 out of 1933
Neff 10.9
Searched_HMMs 46136
Date Fri Aug 16 17:13:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3781.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3781hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0617|consensus 99.9 1.4E-23 3E-28 137.2 -2.1 172 5-178 32-232 (264)
2 KOG0472|consensus 99.9 7.1E-23 1.5E-27 149.2 0.8 173 8-181 390-564 (565)
3 KOG0617|consensus 99.8 1.5E-23 3.3E-28 137.0 -3.2 142 23-164 27-169 (264)
4 KOG0472|consensus 99.8 3.8E-21 8.2E-26 140.2 -4.4 168 9-180 163-332 (565)
5 KOG4194|consensus 99.8 8.2E-20 1.8E-24 138.8 0.7 165 4-168 267-439 (873)
6 KOG4194|consensus 99.8 1.4E-19 2.9E-24 137.7 1.4 165 4-169 195-365 (873)
7 PLN00113 leucine-rich repeat r 99.8 8.6E-18 1.9E-22 140.3 11.8 128 5-133 139-271 (968)
8 PLN00113 leucine-rich repeat r 99.7 1.6E-17 3.5E-22 138.7 12.5 157 3-160 401-586 (968)
9 KOG0532|consensus 99.7 3.4E-19 7.4E-24 134.9 -3.6 167 8-178 100-267 (722)
10 KOG0444|consensus 99.7 1.9E-18 4E-23 133.0 -2.6 152 4-157 220-374 (1255)
11 KOG0444|consensus 99.6 7.1E-18 1.5E-22 129.8 -2.5 163 2-164 193-358 (1255)
12 PF14580 LRR_9: Leucine-rich r 99.6 5.9E-16 1.3E-20 103.8 6.3 138 14-153 5-148 (175)
13 PRK15370 E3 ubiquitin-protein 99.6 2.6E-14 5.6E-19 115.2 10.0 148 6-164 220-386 (754)
14 PRK15387 E3 ubiquitin-protein 99.5 3.7E-14 8E-19 114.1 10.2 105 53-165 343-465 (788)
15 PRK15370 E3 ubiquitin-protein 99.5 3.5E-14 7.5E-19 114.4 9.5 147 6-163 199-364 (754)
16 KOG0618|consensus 99.5 3E-15 6.4E-20 119.2 0.3 117 48-168 379-499 (1081)
17 cd00116 LRR_RI Leucine-rich re 99.5 2E-14 4.4E-19 106.1 4.6 162 8-170 110-303 (319)
18 KOG4237|consensus 99.4 1.6E-15 3.4E-20 110.8 -4.5 64 7-70 68-134 (498)
19 PF14580 LRR_9: Leucine-rich r 99.4 2.3E-13 4.9E-18 91.4 5.8 111 48-160 15-128 (175)
20 COG4886 Leucine-rich repeat (L 99.4 1.3E-13 2.8E-18 104.8 5.2 160 6-168 116-300 (394)
21 PRK15387 E3 ubiquitin-protein 99.4 2E-12 4.3E-17 104.3 10.4 54 9-67 204-257 (788)
22 KOG1259|consensus 99.4 2E-14 4.4E-19 102.2 -0.8 131 28-161 283-415 (490)
23 KOG0618|consensus 99.4 7.8E-15 1.7E-19 116.8 -3.3 154 7-161 242-423 (1081)
24 KOG4237|consensus 99.4 1.6E-14 3.4E-19 105.7 -1.7 87 1-87 86-177 (498)
25 cd00116 LRR_RI Leucine-rich re 99.4 2.4E-13 5.3E-18 100.4 2.5 159 4-162 79-267 (319)
26 KOG1259|consensus 99.4 7.4E-14 1.6E-18 99.4 -0.4 132 6-139 284-416 (490)
27 COG4886 Leucine-rich repeat (L 99.4 5.5E-13 1.2E-17 101.5 4.3 151 10-162 97-272 (394)
28 KOG0532|consensus 99.3 3.6E-14 7.7E-19 108.1 -5.0 159 5-166 74-232 (722)
29 PLN03210 Resistant to P. syrin 99.3 8.7E-11 1.9E-15 100.0 12.5 134 2-139 554-699 (1153)
30 KOG3207|consensus 99.2 2.2E-12 4.8E-17 95.6 0.8 158 4-161 144-317 (505)
31 KOG3207|consensus 99.2 4.7E-12 1E-16 93.9 1.2 160 3-162 169-343 (505)
32 PLN03210 Resistant to P. syrin 99.2 7.6E-10 1.6E-14 94.3 12.9 149 7-162 590-742 (1153)
33 PF13855 LRR_8: Leucine rich r 99.0 2.8E-10 6E-15 63.5 4.0 59 6-64 1-61 (61)
34 PF13855 LRR_8: Leucine rich r 99.0 2E-10 4.3E-15 64.0 3.2 58 98-156 2-60 (61)
35 KOG1909|consensus 99.0 4.2E-11 9E-16 86.6 -0.4 39 4-42 90-133 (382)
36 KOG1909|consensus 99.0 8.8E-11 1.9E-15 85.0 0.8 140 28-167 91-263 (382)
37 KOG1644|consensus 99.0 1.4E-09 3.1E-14 73.4 6.0 125 31-155 21-150 (233)
38 KOG4579|consensus 98.9 5.4E-11 1.2E-15 75.6 -3.0 107 32-140 30-141 (177)
39 KOG4579|consensus 98.9 2.1E-10 4.5E-15 72.9 -0.5 116 54-171 29-149 (177)
40 PLN03150 hypothetical protein; 98.9 7.4E-09 1.6E-13 83.1 7.9 90 76-166 420-511 (623)
41 KOG0531|consensus 98.9 2.7E-10 5.8E-15 87.3 -0.7 127 6-135 72-199 (414)
42 KOG0531|consensus 98.9 3.2E-10 7E-15 86.9 -0.4 159 2-161 91-271 (414)
43 PLN03150 hypothetical protein; 98.9 1.7E-08 3.8E-13 81.0 9.3 102 54-156 420-526 (623)
44 KOG2982|consensus 98.8 2.7E-09 5.9E-14 76.3 2.4 155 5-159 70-263 (418)
45 KOG1859|consensus 98.8 6.1E-11 1.3E-15 93.4 -7.0 128 30-160 165-294 (1096)
46 KOG1859|consensus 98.8 7.2E-11 1.6E-15 93.0 -7.0 152 4-161 107-270 (1096)
47 KOG4658|consensus 98.7 5.7E-09 1.2E-13 86.1 1.9 159 6-164 545-736 (889)
48 PF12799 LRR_4: Leucine Rich r 98.6 3.8E-08 8.2E-13 50.7 2.8 36 123-158 2-37 (44)
49 KOG1644|consensus 98.6 1.7E-07 3.7E-12 63.5 5.7 102 30-132 43-150 (233)
50 PF12799 LRR_4: Leucine Rich r 98.5 1.2E-07 2.6E-12 48.8 3.4 35 8-42 3-37 (44)
51 KOG3665|consensus 98.4 1E-07 2.2E-12 77.0 2.6 138 29-167 122-272 (699)
52 KOG2120|consensus 98.4 5.7E-09 1.2E-13 74.7 -4.3 155 2-156 206-374 (419)
53 COG5238 RNA1 Ran GTPase-activa 98.4 2.3E-07 5.1E-12 65.8 2.4 139 27-165 90-262 (388)
54 KOG4658|consensus 98.3 4.1E-07 9E-12 75.4 3.6 145 7-153 524-676 (889)
55 PRK15386 type III secretion pr 98.3 5.7E-06 1.2E-10 62.7 8.9 72 4-85 50-123 (426)
56 KOG3665|consensus 98.2 8.6E-07 1.9E-11 71.8 3.0 129 6-135 122-263 (699)
57 PF13306 LRR_5: Leucine rich r 98.2 1.4E-05 3E-10 51.2 7.9 96 30-131 13-112 (129)
58 COG5238 RNA1 Ran GTPase-activa 98.2 9.4E-07 2E-11 62.8 2.5 166 5-171 29-240 (388)
59 KOG2120|consensus 98.2 2.5E-08 5.5E-13 71.4 -5.6 150 7-156 186-349 (419)
60 PF13306 LRR_5: Leucine rich r 98.1 2.5E-05 5.3E-10 50.0 6.9 117 2-124 8-128 (129)
61 KOG2982|consensus 98.0 6.9E-07 1.5E-11 64.3 -0.6 83 28-110 70-159 (418)
62 KOG2123|consensus 97.9 3.1E-07 6.8E-12 65.4 -4.6 99 52-151 19-123 (388)
63 KOG2739|consensus 97.8 1.7E-05 3.7E-10 55.9 2.6 39 97-135 91-129 (260)
64 PRK15386 type III secretion pr 97.5 0.00035 7.7E-09 53.2 6.7 117 27-155 50-187 (426)
65 KOG2739|consensus 97.2 0.00033 7.1E-09 49.6 3.1 87 72-159 41-130 (260)
66 KOG2123|consensus 97.0 6.3E-05 1.4E-09 54.0 -2.4 87 73-163 18-106 (388)
67 KOG4308|consensus 96.7 6.7E-06 1.5E-10 64.0 -9.4 165 3-167 112-312 (478)
68 PF00560 LRR_1: Leucine Rich R 96.7 0.00067 1.5E-08 29.2 0.8 15 9-23 3-17 (22)
69 PF00560 LRR_1: Leucine Rich R 96.5 0.0021 4.6E-08 27.5 1.5 21 30-50 1-21 (22)
70 PF13504 LRR_7: Leucine rich r 96.1 0.0036 7.7E-08 25.0 1.1 12 124-135 3-14 (17)
71 smart00369 LRR_TYP Leucine-ric 95.5 0.011 2.4E-07 26.3 1.7 21 6-26 2-22 (26)
72 smart00370 LRR Leucine-rich re 95.5 0.011 2.4E-07 26.3 1.7 21 6-26 2-22 (26)
73 smart00369 LRR_TYP Leucine-ric 95.4 0.018 4E-07 25.6 2.3 22 145-166 2-23 (26)
74 smart00370 LRR Leucine-rich re 95.4 0.018 4E-07 25.6 2.3 22 145-166 2-23 (26)
75 PF13516 LRR_6: Leucine Rich r 94.7 0.0091 2E-07 26.0 0.1 23 144-166 1-23 (24)
76 KOG4308|consensus 94.6 0.00033 7.2E-09 54.8 -7.9 164 8-171 89-288 (478)
77 KOG1947|consensus 94.5 0.01 2.2E-07 46.4 -0.1 61 73-133 242-306 (482)
78 KOG4341|consensus 93.9 0.016 3.5E-07 44.1 -0.0 147 6-155 268-436 (483)
79 KOG1947|consensus 93.4 0.026 5.6E-07 44.1 0.4 109 50-158 186-308 (482)
80 KOG0473|consensus 93.1 0.0015 3.3E-08 45.9 -6.0 82 28-109 41-123 (326)
81 KOG4341|consensus 92.8 0.042 9.1E-07 42.0 0.7 146 5-150 293-457 (483)
82 smart00368 LRR_RI Leucine rich 92.5 0.1 2.2E-06 23.7 1.5 23 145-167 2-24 (28)
83 KOG0473|consensus 92.3 0.0026 5.7E-08 44.8 -5.7 86 48-135 38-124 (326)
84 KOG3864|consensus 91.4 0.025 5.4E-07 39.0 -1.7 79 75-154 102-185 (221)
85 smart00365 LRR_SD22 Leucine-ri 88.6 0.5 1.1E-05 21.1 1.9 13 53-65 3-15 (26)
86 smart00364 LRR_BAC Leucine-ric 88.5 0.36 7.8E-06 21.5 1.4 18 122-139 2-19 (26)
87 KOG3763|consensus 82.9 0.87 1.9E-05 36.4 1.9 61 72-135 216-283 (585)
88 KOG3864|consensus 82.0 1.2 2.7E-05 30.9 2.2 75 96-171 100-178 (221)
89 smart00367 LRR_CC Leucine-rich 71.2 3.3 7.1E-05 18.1 1.3 11 122-132 2-12 (26)
90 KOG3763|consensus 66.5 4 8.8E-05 32.8 1.7 35 28-62 217-254 (585)
91 TIGR00864 PCC polycystin catio 37.2 27 0.00057 34.2 2.3 31 80-110 1-32 (2740)
92 TIGR00864 PCC polycystin catio 36.6 23 0.00051 34.5 1.8 31 12-42 1-32 (2740)
93 TIGR02167 Liste_lipo_26 bacter 25.3 40 0.00086 14.8 0.7 14 2-15 2-15 (26)
No 1
>KOG0617|consensus
Probab=99.86 E-value=1.4e-23 Score=137.18 Aligned_cols=172 Identities=28% Similarity=0.526 Sum_probs=107.0
Q ss_pred CCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCC
Q psy3781 5 EAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSS 83 (183)
Q Consensus 5 ~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~ 83 (183)
+..++.|.+++|.++.+|+.+.++.+|+.+++.+|+++++|.+++.+++|+.|.++-|.+..+|.++ .++.|+.||+++
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence 4455666666666666666666666666666666666666666666666666666666666666666 666666666666
Q ss_pred CCCC--CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCc-----
Q psy3781 84 NKFQ--QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNC----- 156 (183)
Q Consensus 84 ~~~~--~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~----- 156 (183)
|++. .+|..++-+..|+.|++++|.+.-+ |...+.+++|+.+.+..|.+-++|..++.+..|+.|++.+|.
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dndfe~l--p~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDNDFEIL--PPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCCcccC--ChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecC
Confidence 6665 3455555555666666666666555 555666666666666666666666655555555555555554
Q ss_pred ---------------------CCCCcHHHhhhChHHHHHHHhh
Q psy3781 157 ---------------------FKYPRQDILQKGTPFLLSYLRD 178 (183)
Q Consensus 157 ---------------------~~~~~~~~~~~~~~~~~~~l~~ 178 (183)
+...+.+.|.-+..+.++|++.
T Consensus 190 pel~~l~l~~~k~v~r~E~NPwv~pIaeQf~lG~shV~~yirt 232 (264)
T KOG0617|consen 190 PELANLDLVGNKQVMRMEENPWVNPIAEQFLLGISHVIDYIRT 232 (264)
T ss_pred hhhhhhhhhhhHHHHhhhhCCCCChHHHHHHhhHHHHHHHHhh
Confidence 4444555555566666666654
No 2
>KOG0472|consensus
Probab=99.85 E-value=7.1e-23 Score=149.15 Aligned_cols=173 Identities=40% Similarity=0.704 Sum_probs=148.9
Q ss_pred ccEEecCCCcceecccccccCCC-ccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCC
Q psy3781 8 VEQADLSYNRLHVVNSKLFDITS-IRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNK 85 (183)
Q Consensus 8 l~~l~l~~~~i~~l~~~~~~~~~-l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~ 85 (183)
++.++++.|++.++|..+..+.. ++.+.+++|.+..+|..+..+++++.|++++|-+.++|... .+..|+.++++.|+
T Consensus 390 Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~Nr 469 (565)
T KOG0472|consen 390 VTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNR 469 (565)
T ss_pred eEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccc
Confidence 45566666666666666554443 33455666666666677788999999999999999999888 88889999999999
Q ss_pred CCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcHHHh
Q psy3781 86 FQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDIL 165 (183)
Q Consensus 86 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 165 (183)
+..+|..++....++.+-.++|++..+. +..++++.+|.+|++..|.++.+|+.+++++++++|.++||+|+.++..++
T Consensus 470 Fr~lP~~~y~lq~lEtllas~nqi~~vd-~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~Pr~~iL 548 (565)
T KOG0472|consen 470 FRMLPECLYELQTLETLLASNNQIGSVD-PSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQPRHQIL 548 (565)
T ss_pred cccchHHHhhHHHHHHHHhccccccccC-hHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCCCHHHHh
Confidence 9999998888888888877889999986 677999999999999999999999999999999999999999999999999
Q ss_pred hhChHHHHHHHhhcCC
Q psy3781 166 QKGTPFLLSYLRDKLP 181 (183)
Q Consensus 166 ~~~~~~~~~~l~~~~~ 181 (183)
.+++..++.|+++.+|
T Consensus 549 mkgT~aiL~ylrdrIp 564 (565)
T KOG0472|consen 549 MKGTAAILSYLRDRIP 564 (565)
T ss_pred ccChHHHHHHhcccCC
Confidence 9999999999999988
No 3
>KOG0617|consensus
Probab=99.85 E-value=1.5e-23 Score=137.01 Aligned_cols=142 Identities=30% Similarity=0.502 Sum_probs=113.9
Q ss_pred cccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCCCCCcchhccCCCCCcE
Q psy3781 23 SKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEI 101 (183)
Q Consensus 23 ~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 101 (183)
++++++.+++.+.++.|+++.+|+.+..+.+|+.|.+.+|++.++|... ++++|+.|+++.|++..+|.+++.++.|+.
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence 3456677788888888888888888888888888888888888888877 788888888888888888888888888888
Q ss_pred EEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcHHH
Q psy3781 102 LILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDI 164 (183)
Q Consensus 102 l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 164 (183)
|++.+|++.+...|..|..++.|+.+++++|.|.-+|..++.+++|+.|.+++|.+-..+.++
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkei 169 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEI 169 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHH
Confidence 888888887766677777788888888888888888888888888888888888776666554
No 4
>KOG0472|consensus
Probab=99.77 E-value=3.8e-21 Score=140.24 Aligned_cols=168 Identities=35% Similarity=0.622 Sum_probs=125.8
Q ss_pred cEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCCCC
Q psy3781 9 EQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQ 87 (183)
Q Consensus 9 ~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~~ 87 (183)
..+++.+|.+.++|+..-++..+++++...|-++.+|+.+.++.+|+.|++..|++..+| .+ ++..|.+++++.|.+.
T Consensus 163 ~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~ 241 (565)
T KOG0472|consen 163 SKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIE 241 (565)
T ss_pred HHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHH
Confidence 333444444444444333344445555555555555555666666666666666666666 33 6666677777777777
Q ss_pred Ccchhcc-CCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcHHHhh
Q psy3781 88 QIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQ 166 (183)
Q Consensus 88 ~~~~~~~-~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 166 (183)
.+|.... +++++..|++.+|.++++ |..+.-+.+|+.+|+++|.++.+|..++++ +|+.|-+.||+++.+..++++
T Consensus 242 ~lpae~~~~L~~l~vLDLRdNklke~--Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~ 318 (565)
T KOG0472|consen 242 MLPAEHLKHLNSLLVLDLRDNKLKEV--PDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIIS 318 (565)
T ss_pred hhHHHHhcccccceeeeccccccccC--chHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHc
Confidence 7766444 688899999999999998 788888889999999999999999999999 999999999999999999999
Q ss_pred hChHHHHHHHhhcC
Q psy3781 167 KGTPFLLSYLRDKL 180 (183)
Q Consensus 167 ~~~~~~~~~l~~~~ 180 (183)
+++..+++|++.+.
T Consensus 319 ~gT~~vLKyLrs~~ 332 (565)
T KOG0472|consen 319 KGTQEVLKYLRSKI 332 (565)
T ss_pred ccHHHHHHHHHHhh
Confidence 99999999999854
No 5
>KOG4194|consensus
Probab=99.76 E-value=8.2e-20 Score=138.82 Aligned_cols=165 Identities=28% Similarity=0.377 Sum_probs=96.6
Q ss_pred CCCCccEEecCCCcceeccc-ccccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCCeE
Q psy3781 4 KEAQVEQADLSYNRLHVVNS-KLFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLREL 79 (183)
Q Consensus 4 ~~~~l~~l~l~~~~i~~l~~-~~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L 79 (183)
.|.++++|+++.|++..+.. +++++..|+.|++++|.|+++... +.-.++|+.|++++|.++.++.+. .+..|++|
T Consensus 267 ~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L 346 (873)
T KOG4194|consen 267 GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL 346 (873)
T ss_pred eecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence 34444455555554443322 233455555555555555544322 333445555555555555554443 44555555
Q ss_pred eCCCCCCCCcchh-ccCCCCCcEEEcCCCcccccc--CchhhhcCCCccEEeCCCCCCccCCh-hccccCcccEEeccCC
Q psy3781 80 NLSSNKFQQIPKC-IFHLDNLEILILNNNDIEEIN--QPEKLVKMQKLTVLDLSNNNIRKIPY-ELGLAQQLHHLNLVGN 155 (183)
Q Consensus 80 ~l~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~L~~l~l~~n 155 (183)
.++.|+++.+.++ +..+++|+.|++.+|.+.... ....|.++++|+.|.+.||++..+|. ++.++..|++|++.+|
T Consensus 347 nLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 347 NLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred cccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCC
Confidence 5555555555443 223566677777777654321 14556667788888888888887774 4788888888888888
Q ss_pred cCCCCcHHHhhhC
Q psy3781 156 CFKYPRQDILQKG 168 (183)
Q Consensus 156 ~~~~~~~~~~~~~ 168 (183)
+|..+-++.|.+.
T Consensus 427 aiaSIq~nAFe~m 439 (873)
T KOG4194|consen 427 AIASIQPNAFEPM 439 (873)
T ss_pred cceeecccccccc
Confidence 8888888887776
No 6
>KOG4194|consensus
Probab=99.76 E-value=1.4e-19 Score=137.66 Aligned_cols=165 Identities=27% Similarity=0.366 Sum_probs=95.9
Q ss_pred CCCCccEEecCCCcceeccccccc-CCCccEEEcCCCcCCCC-CccccCCCCCceEEcCCCccccccCcc--ccCCCCeE
Q psy3781 4 KEAQVEQADLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNL-PPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLREL 79 (183)
Q Consensus 4 ~~~~l~~l~l~~~~i~~l~~~~~~-~~~l~~l~l~~~~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L 79 (183)
.+.+|..|.++.|.++.+|...|. +++|+.|+|..|.+..+ --.|.++++|+.|.+..|.+..+.++. .+.++++|
T Consensus 195 ~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l 274 (873)
T KOG4194|consen 195 SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHL 274 (873)
T ss_pred ccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeeccccee
Confidence 334444444444444444444442 55555555555544433 112445555555555555555565655 66667777
Q ss_pred eCCCCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCcC
Q psy3781 80 NLSSNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCF 157 (183)
Q Consensus 80 ~l~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~ 157 (183)
+++.|+++.+.. +++.+..|+.|+++.|.|..+. +..|..+++|+.|+++.|.++++++. +..+..|+.|.+++|.+
T Consensus 275 ~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih-~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi 353 (873)
T KOG4194|consen 275 NLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH-IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI 353 (873)
T ss_pred ecccchhhhhhcccccccchhhhhccchhhhheee-cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccch
Confidence 777777766543 4556667777777777777666 66676777777777777777766544 55566666666666666
Q ss_pred CCCcHHHhhhCh
Q psy3781 158 KYPRQDILQKGT 169 (183)
Q Consensus 158 ~~~~~~~~~~~~ 169 (183)
.......|....
T Consensus 354 ~~l~e~af~~ls 365 (873)
T KOG4194|consen 354 DHLAEGAFVGLS 365 (873)
T ss_pred HHHHhhHHHHhh
Confidence 655555555443
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.75 E-value=8.6e-18 Score=140.29 Aligned_cols=128 Identities=29% Similarity=0.385 Sum_probs=54.8
Q ss_pred CCCccEEecCCCcce-ecccccccCCCccEEEcCCCcCC-CCCccccCCCCCceEEcCCCcccc-ccCcc-ccCCCCeEe
Q psy3781 5 EAQVEQADLSYNRLH-VVNSKLFDITSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLENNKLET-IDIDF-NFGHLRELN 80 (183)
Q Consensus 5 ~~~l~~l~l~~~~i~-~l~~~~~~~~~l~~l~l~~~~l~-~l~~~~~~~~~L~~L~l~~n~l~~-~~~~~-~~~~L~~L~ 80 (183)
+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+.. ++..+ .+.+|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 344555555555544 34444444555555555555443 344444444445555554444432 22222 344444444
Q ss_pred CCCCCCC-CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCC
Q psy3781 81 LSSNKFQ-QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNN 133 (183)
Q Consensus 81 l~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~ 133 (183)
+++|.++ .+|..+..+++|+.|++++|.+.+.. +..++.+++|+.|++++|.
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI-PSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceecccc-ChhHhCCCCCCEEECcCCe
Confidence 4444443 22333333444444444444433322 3333333333333333333
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.75 E-value=1.6e-17 Score=138.70 Aligned_cols=157 Identities=25% Similarity=0.341 Sum_probs=78.5
Q ss_pred CCCCCccEEecCCCcce-ecccccccCCCccEEEcCCCcCC-CCCccccCCCCCceEEcCCCccccc-------------
Q psy3781 3 AKEAQVEQADLSYNRLH-VVNSKLFDITSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLENNKLETI------------- 67 (183)
Q Consensus 3 ~~~~~l~~l~l~~~~i~-~l~~~~~~~~~l~~l~l~~~~l~-~l~~~~~~~~~L~~L~l~~n~l~~~------------- 67 (183)
..+++|+.|++++|.+. .+|..+..++.++.+++++|.++ .++..+..+++|+.|++++|.+...
T Consensus 401 ~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L 480 (968)
T PLN00113 401 GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENL 480 (968)
T ss_pred hCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEE
Confidence 34556666666666665 34444455666666666666555 2333333444555555554444321
Q ss_pred -----------cCcc-ccCCCCeEeCCCCCCC-CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCC
Q psy3781 68 -----------DIDF-NFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNI 134 (183)
Q Consensus 68 -----------~~~~-~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l 134 (183)
+..+ .+++|++|++++|.+. .+|..+..+++|+.|++++|.+++.. +..++.+++|+.|++++|.+
T Consensus 481 ~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 481 DLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI-PASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred ECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccC-ChhHhCcccCCEEECCCCcc
Confidence 1112 3344444444444444 23334444455555555555555443 44455555555555555555
Q ss_pred c-cCChhccccCcccEEeccCCcCCCC
Q psy3781 135 R-KIPYELGLAQQLHHLNLVGNCFKYP 160 (183)
Q Consensus 135 ~-~~~~~~~~~~~L~~l~l~~n~~~~~ 160 (183)
+ .+|..+..+++|+.+++++|++.+.
T Consensus 560 ~~~~p~~l~~l~~L~~l~ls~N~l~~~ 586 (968)
T PLN00113 560 SGEIPKNLGNVESLVQVNISHNHLHGS 586 (968)
T ss_pred cccCChhHhcCcccCEEeccCCcceee
Confidence 4 4455455555555555555555443
No 9
>KOG0532|consensus
Probab=99.70 E-value=3.4e-19 Score=134.87 Aligned_cols=167 Identities=29% Similarity=0.437 Sum_probs=135.4
Q ss_pred ccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCCC
Q psy3781 8 VEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKF 86 (183)
Q Consensus 8 l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~ 86 (183)
|+.+.++.|++..+|..+..+..+++++|+.|+++.+|..++.+ -|+.|.+++|+++.+|... ..++|..++.+.|.+
T Consensus 100 Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei 178 (722)
T KOG0532|consen 100 LESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI 178 (722)
T ss_pred HHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhhh
Confidence 44555666666677777777777777777777777777766543 4677777777777777777 667777888888888
Q ss_pred CCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcHHHhh
Q psy3781 87 QQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQ 166 (183)
Q Consensus 87 ~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 166 (183)
..++..++.+.+|+.+.+.+|++..+ +..+. .-.|..||++.|.+..+|..+..+..|++|-|++|+++.++.+++.
T Consensus 179 ~slpsql~~l~slr~l~vrRn~l~~l--p~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~ 255 (722)
T KOG0532|consen 179 QSLPSQLGYLTSLRDLNVRRNHLEDL--PEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICE 255 (722)
T ss_pred hhchHHhhhHHHHHHHHHhhhhhhhC--CHHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHh
Confidence 88877777777888888888888877 56666 5678899999999999999999999999999999999999999999
Q ss_pred hChHHHHHHHhh
Q psy3781 167 KGTPFLLSYLRD 178 (183)
Q Consensus 167 ~~~~~~~~~l~~ 178 (183)
+++.++.+||..
T Consensus 256 kGkVHIFKyL~~ 267 (722)
T KOG0532|consen 256 KGKVHIFKYLST 267 (722)
T ss_pred ccceeeeeeecc
Confidence 999999999875
No 10
>KOG0444|consensus
Probab=99.67 E-value=1.9e-18 Score=133.01 Aligned_cols=152 Identities=30% Similarity=0.393 Sum_probs=105.9
Q ss_pred CCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCC
Q psy3781 4 KEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLS 82 (183)
Q Consensus 4 ~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~ 82 (183)
.+.+|..+|+++|+++.+|..+..+++|+.|++++|+++++........++++|.++.|+++.+|+.+ .+++|+.|.+.
T Consensus 220 ~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n 299 (1255)
T KOG0444|consen 220 DLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYAN 299 (1255)
T ss_pred hhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhc
Confidence 34556666666666666666666666666666666666666555555666666666666666666666 66666666666
Q ss_pred CCCCC--CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcC
Q psy3781 83 SNKFQ--QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCF 157 (183)
Q Consensus 83 ~~~~~--~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~ 157 (183)
+|+++ .+|++++++.+|+.+..++|.+.-+ |+.+..|..|+.|.++.|.+..+|+.+.-++-++.|+++.|+=
T Consensus 300 ~NkL~FeGiPSGIGKL~~Levf~aanN~LElV--PEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 300 NNKLTFEGIPSGIGKLIQLEVFHAANNKLELV--PEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred cCcccccCCccchhhhhhhHHHHhhccccccC--chhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcC
Confidence 66555 5666666666666666666666655 6777778888888888888888888888888888888888863
No 11
>KOG0444|consensus
Probab=99.64 E-value=7.1e-18 Score=129.85 Aligned_cols=163 Identities=26% Similarity=0.393 Sum_probs=148.3
Q ss_pred CCCCCCccEEecCCCcce--ecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCe
Q psy3781 2 IAKEAQVEQADLSYNRLH--VVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRE 78 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~--~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~ 78 (183)
+..+++|++|.+++.+-+ .+|+.+-++.+|+.++++.|.+..+|..+..+.+|+.|.+++|.++.+.... .|.++++
T Consensus 193 LPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEt 272 (1255)
T KOG0444|consen 193 LPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLET 272 (1255)
T ss_pred CccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhh
Confidence 456778888888887555 7899998999999999999999999999999999999999999999998888 8999999
Q ss_pred EeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCC
Q psy3781 79 LNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFK 158 (183)
Q Consensus 79 L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~ 158 (183)
|++++|+++.+|..+.++++|+.|++.+|.++-.+.|..++.+.+|+.+..++|.+.-+|+.+..|..|+.|.++.|.+-
T Consensus 273 LNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 273 LNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred hccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee
Confidence 99999999999999999999999999999988777699999999999999999999999999999999999999999887
Q ss_pred CCcHHH
Q psy3781 159 YPRQDI 164 (183)
Q Consensus 159 ~~~~~~ 164 (183)
..+..+
T Consensus 353 TLPeaI 358 (1255)
T KOG0444|consen 353 TLPEAI 358 (1255)
T ss_pred echhhh
Confidence 777655
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.63 E-value=5.9e-16 Score=103.77 Aligned_cols=138 Identities=28% Similarity=0.359 Sum_probs=58.0
Q ss_pred CCCcceecccccccCCCccEEEcCCCcCCCCCcccc-CCCCCceEEcCCCccccccCccccCCCCeEeCCCCCCCCcchh
Q psy3781 14 SYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKC 92 (183)
Q Consensus 14 ~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 92 (183)
..+-|...+... +..++++|++.+|.|+.+. .+. .+.+++.|++++|.++.++....++.|++|++++|+++.+...
T Consensus 5 t~~~i~~~~~~~-n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 5 TANMIEQIAQYN-NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHH
T ss_pred cccccccccccc-ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccc
Confidence 333444333322 3457899999999999875 344 5789999999999999987544889999999999999998665
Q ss_pred cc-CCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh----ccccCcccEEecc
Q psy3781 93 IF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE----LGLAQQLHHLNLV 153 (183)
Q Consensus 93 ~~-~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~----~~~~~~L~~l~l~ 153 (183)
+. .+++|+.|++++|.+.++.....++.+++|+.|++.+|++++.+.. +..+|+|+.||-.
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 53 5899999999999999887567888899999999999999966542 6789999988754
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.56 E-value=2.6e-14 Score=115.18 Aligned_cols=148 Identities=25% Similarity=0.378 Sum_probs=92.9
Q ss_pred CCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCCC
Q psy3781 6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNK 85 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~ 85 (183)
.+|+.|++++|.+..+|..+. .+|+.|++++|+++.+|..+. .+|+.|++++|.++.+|..+ ..+|+.|++++|+
T Consensus 220 ~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l-~~sL~~L~Ls~N~ 294 (754)
T PRK15370 220 GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENL-PEELRYLSVYDNS 294 (754)
T ss_pred cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCcccccc-CCCCcEEECCCCc
Confidence 467888888888777776543 356777777777766665543 35666666666666555433 1355666666665
Q ss_pred CCCcchhcc-------------------CCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCc
Q psy3781 86 FQQIPKCIF-------------------HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQ 146 (183)
Q Consensus 86 ~~~~~~~~~-------------------~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~ 146 (183)
++.+|..+. ..++|+.|++++|.++.+ +..+ .++|+.|++++|.++.+|..+ .++
T Consensus 295 Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~L--P~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~ 368 (754)
T PRK15370 295 IRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSL--PASL--PPELQVLDVSKNQITVLPETL--PPT 368 (754)
T ss_pred cccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccC--Chhh--cCcccEEECCCCCCCcCChhh--cCC
Confidence 554433211 124566666666666655 3322 257888888888888777654 357
Q ss_pred ccEEeccCCcCCCCcHHH
Q psy3781 147 LHHLNLVGNCFKYPRQDI 164 (183)
Q Consensus 147 L~~l~l~~n~~~~~~~~~ 164 (183)
|+.|++++|.+...++..
T Consensus 369 L~~LdLs~N~Lt~LP~~l 386 (754)
T PRK15370 369 ITTLDVSRNALTNLPENL 386 (754)
T ss_pred cCEEECCCCcCCCCCHhH
Confidence 888888888888776654
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=3.7e-14 Score=114.08 Aligned_cols=105 Identities=22% Similarity=0.283 Sum_probs=76.7
Q ss_pred CCceEEcCCCccccccCcc------------------ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccC
Q psy3781 53 HLVYMNLENNKLETIDIDF------------------NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQ 114 (183)
Q Consensus 53 ~L~~L~l~~n~l~~~~~~~------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 114 (183)
+|++|++++|.++.+|... ...+|+.|++++|.++.+|.. .++|+.|++++|.++.+
T Consensus 343 ~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssI-- 417 (788)
T PRK15387 343 GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSL-- 417 (788)
T ss_pred ccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCC--
Confidence 5777777777777655321 112466677777766665542 24677788888887765
Q ss_pred chhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcHHHh
Q psy3781 115 PEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDIL 165 (183)
Q Consensus 115 ~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 165 (183)
|.. ...|+.|++++|.++.+|..+..++.++.+++++|++++..+..+
T Consensus 418 P~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 418 PML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred Ccc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 332 246788899999999999989999999999999999999887766
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.54 E-value=3.5e-14 Score=114.42 Aligned_cols=147 Identities=22% Similarity=0.315 Sum_probs=115.6
Q ss_pred CCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCCC
Q psy3781 6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNK 85 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~ 85 (183)
+.++.|++++|.++.+|..++ .+|+.|++++|+++.+|..+. ..|+.|++++|.+..+|..+ ..+|+.|++++|+
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l-~s~L~~L~Ls~N~ 273 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERL-PSALQSLDLFHNK 273 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhH-hCCCCEEECcCCc
Confidence 368999999999999988765 589999999999999887654 47999999999999887665 3479999999999
Q ss_pred CCCcchhccCCCCCcEEEcCCCccccccCchhhh-------------------cCCCccEEeCCCCCCccCChhccccCc
Q psy3781 86 FQQIPKCIFHLDNLEILILNNNDIEEINQPEKLV-------------------KMQKLTVLDLSNNNIRKIPYELGLAQQ 146 (183)
Q Consensus 86 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~-------------------~~~~L~~l~l~~n~l~~~~~~~~~~~~ 146 (183)
++.+|..+. ++|+.|++++|.++.+. ..+. ..++|+.|++++|.++.+|..+ +++
T Consensus 274 L~~LP~~l~--~sL~~L~Ls~N~Lt~LP--~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--~~s 347 (754)
T PRK15370 274 ISCLPENLP--EELRYLSVYDNSIRTLP--AHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASL--PPE 347 (754)
T ss_pred cCccccccC--CCCcEEECCCCccccCc--ccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhh--cCc
Confidence 998877554 58999999999988753 2111 1245777777777777777554 368
Q ss_pred ccEEeccCCcCCCCcHH
Q psy3781 147 LHHLNLVGNCFKYPRQD 163 (183)
Q Consensus 147 L~~l~l~~n~~~~~~~~ 163 (183)
|+.|++++|.++..+..
T Consensus 348 L~~L~Ls~N~L~~LP~~ 364 (754)
T PRK15370 348 LQVLDVSKNQITVLPET 364 (754)
T ss_pred ccEEECCCCCCCcCChh
Confidence 88889998888866543
No 16
>KOG0618|consensus
Probab=99.50 E-value=3e-15 Score=119.16 Aligned_cols=117 Identities=32% Similarity=0.499 Sum_probs=88.2
Q ss_pred ccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCcc
Q psy3781 48 LLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT 125 (183)
Q Consensus 48 ~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~ 125 (183)
+.++.+|+.|++++|.++.+|+.. .+..|++|++++|+++.+|..+..++.|+.|...+|.+... | .+..++.|+
T Consensus 379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~f--P-e~~~l~qL~ 455 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSF--P-ELAQLPQLK 455 (1081)
T ss_pred hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeec--h-hhhhcCcce
Confidence 556678888888888888887766 77788888888888888887777788888888888887766 5 777888999
Q ss_pred EEeCCCCCCccC--ChhccccCcccEEeccCCcCCCCcHHHhhhC
Q psy3781 126 VLDLSNNNIRKI--PYELGLAQQLHHLNLVGNCFKYPRQDILQKG 168 (183)
Q Consensus 126 ~l~l~~n~l~~~--~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 168 (183)
.+|++.|.++.+ +.... .++|++|+++||.-.......+..-
T Consensus 456 ~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d~~~l~~l 499 (1081)
T KOG0618|consen 456 VLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFDHKTLKVL 499 (1081)
T ss_pred EEecccchhhhhhhhhhCC-CcccceeeccCCcccccchhhhHHh
Confidence 999999988843 33221 2789999999997655555554443
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.50 E-value=2e-14 Score=106.14 Aligned_cols=162 Identities=25% Similarity=0.356 Sum_probs=92.0
Q ss_pred ccEEecCCCcce-----ecccccccC-CCccEEEcCCCcCC-----CCCccccCCCCCceEEcCCCcccc-----ccCcc
Q psy3781 8 VEQADLSYNRLH-----VVNSKLFDI-TSIRELDLSHNLIQ-----NLPPDLLNLRHLVYMNLENNKLET-----IDIDF 71 (183)
Q Consensus 8 l~~l~l~~~~i~-----~l~~~~~~~-~~l~~l~l~~~~l~-----~l~~~~~~~~~L~~L~l~~n~l~~-----~~~~~ 71 (183)
|+.|++++|.+. .+...+..+ ++|+.+++++|.++ .+...+..++++++|++++|.++. +....
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l 189 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL 189 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH
Confidence 555555555554 112223334 56666666666655 122234445566677776666652 11112
Q ss_pred -ccCCCCeEeCCCCCCCC-----cchhccCCCCCcEEEcCCCccccccCchhhh-c----CCCccEEeCCCCCCc-----
Q psy3781 72 -NFGHLRELNLSSNKFQQ-----IPKCIFHLDNLEILILNNNDIEEINQPEKLV-K----MQKLTVLDLSNNNIR----- 135 (183)
Q Consensus 72 -~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~-~----~~~L~~l~l~~n~l~----- 135 (183)
..++|++|++++|.++. +...+..+++|+.|++++|.+++.. ...+. . .+.|+.+++++|.++
T Consensus 190 ~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~-~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~ 268 (319)
T cd00116 190 KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG-AAALASALLSPNISLLTLSLSCNDITDDGAK 268 (319)
T ss_pred HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH-HHHHHHHHhccCCCceEEEccCCCCCcHHHH
Confidence 34567777777776652 2233445667777777777776543 22221 2 257777777777775
Q ss_pred cCChhccccCcccEEeccCCcCCCCcHHHhhhChH
Q psy3781 136 KIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTP 170 (183)
Q Consensus 136 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 170 (183)
.+...+..+++|+.+++++|.++..+...+.+..+
T Consensus 269 ~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~ 303 (319)
T cd00116 269 DLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLL 303 (319)
T ss_pred HHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHh
Confidence 23334555677888888888888777666655433
No 18
>KOG4237|consensus
Probab=99.44 E-value=1.6e-15 Score=110.82 Aligned_cols=64 Identities=27% Similarity=0.419 Sum_probs=41.3
Q ss_pred CccEEecCCCcceecccccc-cCCCccEEEcCCCcCCCCCc-cccCCCCCceEEc-CCCccccccCc
Q psy3781 7 QVEQADLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNL-ENNKLETIDID 70 (183)
Q Consensus 7 ~l~~l~l~~~~i~~l~~~~~-~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l-~~n~l~~~~~~ 70 (183)
....++|..|.|+.+|++.| .+++|+.++|++|+|+.|.+ .|.++..+..|.+ ++|+|++++.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 34567777777777777766 57777777777777776543 3666666544443 33666655543
No 19
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.44 E-value=2.3e-13 Score=91.35 Aligned_cols=111 Identities=30% Similarity=0.293 Sum_probs=45.1
Q ss_pred ccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccE
Q psy3781 48 LLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126 (183)
Q Consensus 48 ~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~ 126 (183)
+.+..+++.|++.+|.+..+.... .+.+|+.|++++|.++.+. ++..++.|+.|++++|.++++. ......+++|+.
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~ 92 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-C-HHHHHH-TT--E
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccc-cchHHhCCcCCE
Confidence 444567899999999999887544 6789999999999999884 5677899999999999999984 333357899999
Q ss_pred EeCCCCCCccCC--hhccccCcccEEeccCCcCCCC
Q psy3781 127 LDLSNNNIRKIP--YELGLAQQLHHLNLVGNCFKYP 160 (183)
Q Consensus 127 l~l~~n~l~~~~--~~~~~~~~L~~l~l~~n~~~~~ 160 (183)
|++++|.|.++. ..++.+++|+.|++.+|++...
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 999999998664 3478899999999999998754
No 20
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.44 E-value=1.3e-13 Score=104.84 Aligned_cols=160 Identities=34% Similarity=0.466 Sum_probs=101.0
Q ss_pred CCccEEecCCCcceecccccccCC-CccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCC
Q psy3781 6 AQVEQADLSYNRLHVVNSKLFDIT-SIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSS 83 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l~~~~~~~~-~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~ 83 (183)
+.++.+++.++.+..+++...... +++.+++++|.+..++..+..++.|+.|++++|++.+++... ..+.++.+++++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~ 195 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG 195 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence 345566666666666666555553 666666666666666555555666666666666666666555 555566666666
Q ss_pred CCCCCcchhccCCCCCcEEEcCCC-----------------------ccccccCchhhhcCCCccEEeCCCCCCccCChh
Q psy3781 84 NKFQQIPKCIFHLDNLEILILNNN-----------------------DIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE 140 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~L~~l~l~~n-----------------------~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~ 140 (183)
|+++.++........|+.+.+++| .+... +...+.++.++.+++++|.+++++.
T Consensus 196 N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~--~~~~~~l~~l~~L~~s~n~i~~i~~- 272 (394)
T COG4886 196 NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL--PESIGNLSNLETLDLSNNQISSISS- 272 (394)
T ss_pred CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec--cchhccccccceecccccccccccc-
Confidence 666555443322333444444444 44433 3555666778888888888888877
Q ss_pred ccccCcccEEeccCCcCCCCcHHHhhhC
Q psy3781 141 LGLAQQLHHLNLVGNCFKYPRQDILQKG 168 (183)
Q Consensus 141 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 168 (183)
+....+++.+++++|.+....+......
T Consensus 273 ~~~~~~l~~L~~s~n~~~~~~~~~~~~~ 300 (394)
T COG4886 273 LGSLTNLRELDLSGNSLSNALPLIALLL 300 (394)
T ss_pred ccccCccCEEeccCccccccchhhhccc
Confidence 7788888889998888877766655554
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.41 E-value=2e-12 Score=104.27 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=25.1
Q ss_pred cEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccc
Q psy3781 9 EQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETI 67 (183)
Q Consensus 9 ~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~ 67 (183)
..|+++++.++.+|+.+. ++++.|++.+|+++.+|.. .++|++|++++|.++.+
T Consensus 204 ~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsL 257 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSL 257 (788)
T ss_pred cEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcc
Confidence 345555555555554432 2444455555554444431 23444444444444443
No 22
>KOG1259|consensus
Probab=99.41 E-value=2e-14 Score=102.22 Aligned_cols=131 Identities=30% Similarity=0.363 Sum_probs=78.7
Q ss_pred CCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCC
Q psy3781 28 ITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNN 107 (183)
Q Consensus 28 ~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n 107 (183)
+..|+++++++|.|+.+..+..-.|.++.|+++.|.+..+.....+++|++||+++|.++.+...-..+.+++.|.+++|
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence 34566666666666666555555666666666666666665533666666666666666655443334556666666666
Q ss_pred ccccccCchhhhcCCCccEEeCCCCCCccCCh--hccccCcccEEeccCCcCCCCc
Q psy3781 108 DIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY--ELGLAQQLHHLNLVGNCFKYPR 161 (183)
Q Consensus 108 ~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~--~~~~~~~L~~l~l~~n~~~~~~ 161 (183)
.+.++ ..+..+-+|..|++++|+|..+.+ .++.++-|+.+.+.+|++.+..
T Consensus 363 ~iE~L---SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 363 KIETL---SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hHhhh---hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 66554 334445566666666666664432 3566666666666666665544
No 23
>KOG0618|consensus
Probab=99.41 E-value=7.8e-15 Score=116.83 Aligned_cols=154 Identities=28% Similarity=0.379 Sum_probs=92.8
Q ss_pred CccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCC
Q psy3781 7 QVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNK 85 (183)
Q Consensus 7 ~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~ 85 (183)
+++.++++++.+..+|..+..+.+++.++..+|.++.+|..+....+|+++.+..|.+..+++.. ...+|++|++..|+
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence 56777777777777777677777777777777777766665555556666666666666655555 45556666665555
Q ss_pred CCCcchhcc--------------------------CCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh
Q psy3781 86 FQQIPKCIF--------------------------HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY 139 (183)
Q Consensus 86 ~~~~~~~~~--------------------------~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~ 139 (183)
+..+|..+. .++.|+.|++.+|.+++.. .+.+.+.++|+.|+++.|.++++|+
T Consensus 322 L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c-~p~l~~~~hLKVLhLsyNrL~~fpa 400 (1081)
T KOG0618|consen 322 LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC-FPVLVNFKHLKVLHLSYNRLNSFPA 400 (1081)
T ss_pred ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc-hhhhccccceeeeeecccccccCCH
Confidence 543332111 1223444555555555544 4455555666666666666666665
Q ss_pred h-ccccCcccEEeccCCcCCCCc
Q psy3781 140 E-LGLAQQLHHLNLVGNCFKYPR 161 (183)
Q Consensus 140 ~-~~~~~~L~~l~l~~n~~~~~~ 161 (183)
. +.++..|+.|+++||+++..+
T Consensus 401 s~~~kle~LeeL~LSGNkL~~Lp 423 (1081)
T KOG0618|consen 401 SKLRKLEELEELNLSGNKLTTLP 423 (1081)
T ss_pred HHHhchHHhHHHhcccchhhhhh
Confidence 4 555566666666666666655
No 24
>KOG4237|consensus
Probab=99.40 E-value=1.6e-14 Score=105.68 Aligned_cols=87 Identities=28% Similarity=0.357 Sum_probs=63.6
Q ss_pred CCCCCCCccEEecCCCcceecccccc-cCCCccEEEcCC-CcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCC
Q psy3781 1 MIAKEAQVEQADLSYNRLHVVNSKLF-DITSIRELDLSH-NLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGH 75 (183)
Q Consensus 1 ~l~~~~~l~~l~l~~~~i~~l~~~~~-~~~~l~~l~l~~-~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~ 75 (183)
||..+++|+.|||++|.|+.|.++.+ .++.+..+.+.+ |+|+.+|.. |.++..++-|.+.-|.+..+...+ .+++
T Consensus 86 aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~ 165 (498)
T KOG4237|consen 86 AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPS 165 (498)
T ss_pred hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhh
Confidence 57778888999999999988877666 677776665555 888888876 667888888888888887665544 6666
Q ss_pred CCeEeCCCCCCC
Q psy3781 76 LRELNLSSNKFQ 87 (183)
Q Consensus 76 L~~L~l~~~~~~ 87 (183)
+..|.+-.|.+.
T Consensus 166 l~lLslyDn~~q 177 (498)
T KOG4237|consen 166 LSLLSLYDNKIQ 177 (498)
T ss_pred cchhcccchhhh
Confidence 655555555443
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.36 E-value=2.4e-13 Score=100.40 Aligned_cols=159 Identities=30% Similarity=0.338 Sum_probs=79.5
Q ss_pred CCCCccEEecCCCccee-cccccccCC---CccEEEcCCCcCCC-----CCccccCC-CCCceEEcCCCccccc-----c
Q psy3781 4 KEAQVEQADLSYNRLHV-VNSKLFDIT---SIRELDLSHNLIQN-----LPPDLLNL-RHLVYMNLENNKLETI-----D 68 (183)
Q Consensus 4 ~~~~l~~l~l~~~~i~~-l~~~~~~~~---~l~~l~l~~~~l~~-----l~~~~~~~-~~L~~L~l~~n~l~~~-----~ 68 (183)
++++|+.|++++|.+.. .+..+..+. +|+.|++++|.++. +...+..+ ++|+.|++++|.++.- .
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 34566666666665542 222222222 36666666665551 22223344 5666666666665521 1
Q ss_pred Ccc-ccCCCCeEeCCCCCCCC-----cchhccCCCCCcEEEcCCCccccccC---chhhhcCCCccEEeCCCCCCccC-C
Q psy3781 69 IDF-NFGHLRELNLSSNKFQQ-----IPKCIFHLDNLEILILNNNDIEEINQ---PEKLVKMQKLTVLDLSNNNIRKI-P 138 (183)
Q Consensus 69 ~~~-~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~~~~~L~~l~l~~n~l~~~-~ 138 (183)
..+ .+.++++|++++|.++. ++..+...++|+.|++++|.+.+... ...+..+++|++|++++|.+++. .
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 111 34456666666666651 22233344566666666666654320 12233455666666666666531 1
Q ss_pred hhc-c----ccCcccEEeccCCcCCCCcH
Q psy3781 139 YEL-G----LAQQLHHLNLVGNCFKYPRQ 162 (183)
Q Consensus 139 ~~~-~----~~~~L~~l~l~~n~~~~~~~ 162 (183)
..+ . ..+.|+.+++++|.++....
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~ 267 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGA 267 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence 111 1 13566667776666654433
No 26
>KOG1259|consensus
Probab=99.36 E-value=7.4e-14 Score=99.40 Aligned_cols=132 Identities=25% Similarity=0.320 Sum_probs=113.6
Q ss_pred CCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCC
Q psy3781 6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSN 84 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~ 84 (183)
..|+++|+++|.|+.+...+.=.++++.|++++|.+..+.. +..+++|+.||+++|.++.+..-- .+.++++|.+++|
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence 35788999999999988888778999999999999997755 778999999999999988765433 7889999999999
Q ss_pred CCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh
Q psy3781 85 KFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY 139 (183)
Q Consensus 85 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~ 139 (183)
.+..+ +++..+.+|..|++.+|+|........+++++.|+++.+.+|++..++.
T Consensus 363 ~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 363 KIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 88877 5577788899999999999887657889999999999999999986654
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.36 E-value=5.5e-13 Score=101.45 Aligned_cols=151 Identities=33% Similarity=0.532 Sum_probs=115.5
Q ss_pred EEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCC-CCceEEcCCCccccccCcc-ccCCCCeEeCCCCCCC
Q psy3781 10 QADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLR-HLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQ 87 (183)
Q Consensus 10 ~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~~ 87 (183)
.++...+.+..-...+.+...++.+.+.++.++.+++...... +|+.|++++|.+..++... .++.|+.|+++.|.+.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 4666667665444555566889999999999999999888785 9999999999999997555 8999999999999999
Q ss_pred CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCC-----------------------CCccCChhcccc
Q psy3781 88 QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNN-----------------------NIRKIPYELGLA 144 (183)
Q Consensus 88 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n-----------------------~l~~~~~~~~~~ 144 (183)
.++...+..+.++.+++++|.+..+ +........|+.+.+++| .+..++..+..+
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~i~~l--~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l 254 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNKISDL--PPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNL 254 (394)
T ss_pred hhhhhhhhhhhhhheeccCCccccC--chhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccc
Confidence 9988766788999999999999988 444334444555555555 333334445566
Q ss_pred CcccEEeccCCcCCCCcH
Q psy3781 145 QQLHHLNLVGNCFKYPRQ 162 (183)
Q Consensus 145 ~~L~~l~l~~n~~~~~~~ 162 (183)
+.++.+++++|.+.....
T Consensus 255 ~~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 255 SNLETLDLSNNQISSISS 272 (394)
T ss_pred cccceecccccccccccc
Confidence 667777777777766654
No 28
>KOG0532|consensus
Probab=99.30 E-value=3.6e-14 Score=108.11 Aligned_cols=159 Identities=28% Similarity=0.376 Sum_probs=143.5
Q ss_pred CCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCC
Q psy3781 5 EAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSN 84 (183)
Q Consensus 5 ~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~ 84 (183)
+.....+|++.|.+.++|..+..+..|+.+.++.|.+..+|..+..+..|++++++.|++..+|..+....|+.+-+++|
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNN 153 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNN 153 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecC
Confidence 34456688999999999999999999999999999999999999999999999999999999999985555999999999
Q ss_pred CCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcHHH
Q psy3781 85 KFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDI 164 (183)
Q Consensus 85 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 164 (183)
+++.+|..++...+|..++.+.|.+..+ +..++.+.+|+.+.+..|++..+|+.+..+ .|..||++.|++..++..+
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~nei~sl--psql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~f 230 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNEIQSL--PSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDF 230 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhhhhhc--hHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhh
Confidence 9999999888889999999999999998 788999999999999999999999988844 5899999999999998776
Q ss_pred hh
Q psy3781 165 LQ 166 (183)
Q Consensus 165 ~~ 166 (183)
..
T Consensus 231 r~ 232 (722)
T KOG0532|consen 231 RK 232 (722)
T ss_pred hh
Confidence 43
No 29
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.26 E-value=8.7e-11 Score=99.95 Aligned_cols=134 Identities=21% Similarity=0.341 Sum_probs=66.5
Q ss_pred CCCCCCccEEecCCCcc------e-ecccccccCC-CccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-c
Q psy3781 2 IAKEAQVEQADLSYNRL------H-VVNSKLFDIT-SIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-N 72 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i------~-~l~~~~~~~~-~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~ 72 (183)
|..|++|+.|.+..+.. . .+|.++..++ +|+.|.+.++.++.+|..| ...+|+.|++.++.+..++.+. .
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccccc
Confidence 45566676666644321 1 2344443332 4556666665555555554 2345555666555555555444 5
Q ss_pred cCCCCeEeCCCCC-CCCcchhccCCCCCcEEEcCCCc-cccccCchhhhcCCCccEEeCCCC-CCccCCh
Q psy3781 73 FGHLRELNLSSNK-FQQIPKCIFHLDNLEILILNNND-IEEINQPEKLVKMQKLTVLDLSNN-NIRKIPY 139 (183)
Q Consensus 73 ~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~~L~~l~l~~n-~l~~~~~ 139 (183)
+++|+.++++++. +..+|. +..+++|+.|++.+|. +..+ +..++.+++|+.|++++| .++.+|.
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~l--p~si~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVEL--PSSIQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCcccc--chhhhccCCCCEEeCCCCCCcCccCC
Confidence 5555555555442 333332 3344555555555543 2222 444555555555555553 2334443
No 30
>KOG3207|consensus
Probab=99.22 E-value=2.2e-12 Score=95.58 Aligned_cols=158 Identities=28% Similarity=0.272 Sum_probs=98.3
Q ss_pred CCCCccEEecCCCccee---cccccccCCCccEEEcCCCcCCCCCcc-c-cCCCCCceEEcCCCccccc--cCcc-ccCC
Q psy3781 4 KEAQVEQADLSYNRLHV---VNSKLFDITSIRELDLSHNLIQNLPPD-L-LNLRHLVYMNLENNKLETI--DIDF-NFGH 75 (183)
Q Consensus 4 ~~~~l~~l~l~~~~i~~---l~~~~~~~~~l~~l~l~~~~l~~l~~~-~-~~~~~L~~L~l~~n~l~~~--~~~~-~~~~ 75 (183)
.|+.++.||++.|=+.. +...+.++++|+.|+++.|.+...-.+ . ..+++++.|.++.|.+++- ...+ .+|+
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 46677777777776552 333333677777777777776632222 1 1356777777777777632 2223 6777
Q ss_pred CCeEeCCCCC-CCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccC--Chh-----ccccCcc
Q psy3781 76 LRELNLSSNK-FQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI--PYE-----LGLAQQL 147 (183)
Q Consensus 76 L~~L~l~~~~-~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~--~~~-----~~~~~~L 147 (183)
++.|++..|. +............|+.|++++|++.+.......+.++.|+.++++.+.+.++ |.. ....++|
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL 303 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL 303 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence 7777777774 2211112223456778888888877764446667778888888888877744 222 2456778
Q ss_pred cEEeccCCcCCCCc
Q psy3781 148 HHLNLVGNCFKYPR 161 (183)
Q Consensus 148 ~~l~l~~n~~~~~~ 161 (183)
++|++..|++....
T Consensus 304 ~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 304 EYLNISENNIRDWR 317 (505)
T ss_pred eeeecccCcccccc
Confidence 88888888775554
No 31
>KOG3207|consensus
Probab=99.19 E-value=4.7e-12 Score=93.91 Aligned_cols=160 Identities=26% Similarity=0.301 Sum_probs=123.0
Q ss_pred CCCCCccEEecCCCcceeccccc--ccCCCccEEEcCCCcCC--CCCccccCCCCCceEEcCCCc-cccccCcc-ccCCC
Q psy3781 3 AKEAQVEQADLSYNRLHVVNSKL--FDITSIRELDLSHNLIQ--NLPPDLLNLRHLVYMNLENNK-LETIDIDF-NFGHL 76 (183)
Q Consensus 3 ~~~~~l~~l~l~~~~i~~l~~~~--~~~~~l~~l~l~~~~l~--~l~~~~~~~~~L~~L~l~~n~-l~~~~~~~-~~~~L 76 (183)
..+++|+.|+++.|.+....... ..+++++.|.+++|.++ .+...+..+|+++.|++.+|. +..-.... -++.|
T Consensus 169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L 248 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL 248 (505)
T ss_pred HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence 46899999999999887332222 25789999999999999 344446679999999999995 33222233 67889
Q ss_pred CeEeCCCCCCCCcc--hhccCCCCCcEEEcCCCccccccCchh-----hhcCCCccEEeCCCCCCccCCh--hccccCcc
Q psy3781 77 RELNLSSNKFQQIP--KCIFHLDNLEILILNNNDIEEINQPEK-----LVKMQKLTVLDLSNNNIRKIPY--ELGLAQQL 147 (183)
Q Consensus 77 ~~L~l~~~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~~~~~-----~~~~~~L~~l~l~~n~l~~~~~--~~~~~~~L 147 (183)
++|++++|++-..+ ...+.++.|..|+++.+.+.++..+.. ....++|++|++..|++.+++. .+..+.++
T Consensus 249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nl 328 (505)
T KOG3207|consen 249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENL 328 (505)
T ss_pred hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchh
Confidence 99999999887665 456678999999999999988764333 2446899999999999987654 36677888
Q ss_pred cEEeccCCcCCCCcH
Q psy3781 148 HHLNLVGNCFKYPRQ 162 (183)
Q Consensus 148 ~~l~l~~n~~~~~~~ 162 (183)
+.+.+..|+++.+..
T Consensus 329 k~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 329 KHLRITLNYLNKETD 343 (505)
T ss_pred hhhhccccccccccc
Confidence 999988888876655
No 32
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.15 E-value=7.6e-10 Score=94.33 Aligned_cols=149 Identities=19% Similarity=0.261 Sum_probs=102.6
Q ss_pred CccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCc-cccccCccccCCCCeEeCCCCC
Q psy3781 7 QVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNK-LETIDIDFNFGHLRELNLSSNK 85 (183)
Q Consensus 7 ~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~~~ 85 (183)
+|+.|++.++.+..+|..+ ...+|+.|++.++.+..++..+..+++|+.++++++. +..+|....+++|++|++++|.
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~ 668 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCS 668 (1153)
T ss_pred ccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCC
Confidence 5778888888887777765 4678888888888888877777778888888887764 5555543367788888887764
Q ss_pred -CCCcchhccCCCCCcEEEcCCCc-cccccCchhhhcCCCccEEeCCCCC-CccCChhccccCcccEEeccCCcCCCCcH
Q psy3781 86 -FQQIPKCIFHLDNLEILILNNND-IEEINQPEKLVKMQKLTVLDLSNNN-IRKIPYELGLAQQLHHLNLVGNCFKYPRQ 162 (183)
Q Consensus 86 -~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~~L~~l~l~~n~-l~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 162 (183)
+..+|..+..+++|+.|++++|. +..+ +... ++++|+.|++++|. +..+|.. ..+|+.|++++|.+...+.
T Consensus 669 ~L~~lp~si~~L~~L~~L~L~~c~~L~~L--p~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~ 742 (1153)
T PLN03210 669 SLVELPSSIQYLNKLEDLDMSRCENLEIL--PTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPS 742 (1153)
T ss_pred CccccchhhhccCCCCEEeCCCCCCcCcc--CCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccc
Confidence 45677777777888888888764 4444 3322 56777777777764 3344432 3456677777776655443
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.05 E-value=2.8e-10 Score=63.46 Aligned_cols=59 Identities=37% Similarity=0.667 Sum_probs=39.5
Q ss_pred CCccEEecCCCcceecccccc-cCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCcc
Q psy3781 6 AQVEQADLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKL 64 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l~~~~~-~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l 64 (183)
++|+.|++++|.+..+++..+ .+++|+.+++++|+++.+++ .|.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 456777777777777766554 56777777777777776654 356677777777776653
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.04 E-value=2e-10 Score=64.05 Aligned_cols=58 Identities=41% Similarity=0.586 Sum_probs=32.4
Q ss_pred CCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh-hccccCcccEEeccCCc
Q psy3781 98 NLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY-ELGLAQQLHHLNLVGNC 156 (183)
Q Consensus 98 ~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~L~~l~l~~n~ 156 (183)
+|+.|++++|.++.+. +..|.++++|+++++++|.++.++. .+.++++|+++++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~-~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIP-PDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEEC-TTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccC-HHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555555555555554 4455555555555555555555543 35555666666666554
No 35
>KOG1909|consensus
Probab=99.01 E-value=4.2e-11 Score=86.63 Aligned_cols=39 Identities=23% Similarity=0.179 Sum_probs=18.7
Q ss_pred CCCCccEEecCCCcce-ec----ccccccCCCccEEEcCCCcCC
Q psy3781 4 KEAQVEQADLSYNRLH-VV----NSKLFDITSIRELDLSHNLIQ 42 (183)
Q Consensus 4 ~~~~l~~l~l~~~~i~-~l----~~~~~~~~~l~~l~l~~~~l~ 42 (183)
.++.|+.++|++|.+. .- ...+..+..|++|++.+|.+.
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 4455555555555555 11 112223445555555555544
No 36
>KOG1909|consensus
Probab=99.00 E-value=8.8e-11 Score=84.97 Aligned_cols=140 Identities=22% Similarity=0.199 Sum_probs=73.5
Q ss_pred CCCccEEEcCCCcCC-CC----CccccCCCCCceEEcCCCccccccC--------------cc-ccCCCCeEeCCCCCCC
Q psy3781 28 ITSIRELDLSHNLIQ-NL----PPDLLNLRHLVYMNLENNKLETIDI--------------DF-NFGHLRELNLSSNKFQ 87 (183)
Q Consensus 28 ~~~l~~l~l~~~~l~-~l----~~~~~~~~~L~~L~l~~n~l~~~~~--------------~~-~~~~L~~L~l~~~~~~ 87 (183)
+++|+.++|+.|.+. .- ...+..+..|++|.+.+|.+..... .+ .-++|+.+.+.+|++.
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 345555555555544 11 1123334555555555555542110 11 3345566666666555
Q ss_pred C-----cchhccCCCCCcEEEcCCCccccccC---chhhhcCCCccEEeCCCCCCc-----cCChhccccCcccEEeccC
Q psy3781 88 Q-----IPKCIFHLDNLEILILNNNDIEEINQ---PEKLVKMQKLTVLDLSNNNIR-----KIPYELGLAQQLHHLNLVG 154 (183)
Q Consensus 88 ~-----~~~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~~~~~L~~l~l~~n~l~-----~~~~~~~~~~~L~~l~l~~ 154 (183)
. +...+...+.|+.+.+..|.|...+. ...+..++.|+.|++.+|.|+ .+...++.+++|+.+++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 2 22233334566666666666554331 244556677777777777766 2344456666677777777
Q ss_pred CcCCCCcHHHhhh
Q psy3781 155 NCFKYPRQDILQK 167 (183)
Q Consensus 155 n~~~~~~~~~~~~ 167 (183)
|.+...+...+.+
T Consensus 251 cll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 251 CLLENEGAIAFVD 263 (382)
T ss_pred cccccccHHHHHH
Confidence 7666666555443
No 37
>KOG1644|consensus
Probab=98.98 E-value=1.4e-09 Score=73.39 Aligned_cols=125 Identities=28% Similarity=0.293 Sum_probs=89.9
Q ss_pred ccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCCCCCCcchhccC-CCCCcEEEcCCCcc
Q psy3781 31 IRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDI 109 (183)
Q Consensus 31 l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~l~l~~n~~ 109 (183)
=+++++.+.++..+...-........+|+++|.+..++..-.++.|.+|.+++|+|+.+.+.+.. .+++..|.+.+|.+
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 45566777666544331112345677888888887766555778888888888888888766654 67788888888888
Q ss_pred ccccCchhhhcCCCccEEeCCCCCCccCChh----ccccCcccEEeccCC
Q psy3781 110 EEINQPEKLVKMQKLTVLDLSNNNIRKIPYE----LGLAQQLHHLNLVGN 155 (183)
Q Consensus 110 ~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~----~~~~~~L~~l~l~~n 155 (183)
..++...-+..+++|++|.+-+|+++.-+.. +..+++++.||...-
T Consensus 101 ~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 101 QELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 8777667777888888888888888755432 677888888887753
No 38
>KOG4579|consensus
Probab=98.90 E-value=5.4e-11 Score=75.55 Aligned_cols=107 Identities=24% Similarity=0.339 Sum_probs=51.1
Q ss_pred cEEEcCCCcCCCCCcc---ccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCC
Q psy3781 32 RELDLSHNLIQNLPPD---LLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNN 106 (183)
Q Consensus 32 ~~l~l~~~~l~~l~~~---~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~ 106 (183)
..++++.|++-.+++. +.....|+.+++++|.+.+.|..+ ..+..+.+++++|.++.+|..+..++.|+.++++.
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF 109 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc
Confidence 3445555555444433 222333444455555555554444 33344555555555555555444555555555555
Q ss_pred CccccccCchhhhcCCCccEEeCCCCCCccCChh
Q psy3781 107 NDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE 140 (183)
Q Consensus 107 n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~ 140 (183)
|.+... +..+..+.++..|+..+|.+..++..
T Consensus 110 N~l~~~--p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 110 NPLNAE--PRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred Cccccc--hHHHHHHHhHHHhcCCCCccccCcHH
Confidence 555444 33333344555555555554444443
No 39
>KOG4579|consensus
Probab=98.89 E-value=2.1e-10 Score=72.91 Aligned_cols=116 Identities=26% Similarity=0.328 Sum_probs=97.3
Q ss_pred CceEEcCCCccccccCcc----ccCCCCeEeCCCCCCCCcchhccC-CCCCcEEEcCCCccccccCchhhhcCCCccEEe
Q psy3781 54 LVYMNLENNKLETIDIDF----NFGHLRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128 (183)
Q Consensus 54 L~~L~l~~n~l~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~ 128 (183)
+..++++.|.+-.+++.. ....|+.+++++|.+..+|+.+.. .+....+++++|.++++ |..++.++.|+.++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv--PeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV--PEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc--hHHHhhhHHhhhcc
Confidence 556788888877666655 445677889999999999886654 67899999999999999 77799999999999
Q ss_pred CCCCCCccCChhccccCcccEEeccCCcCCCCcHHHhhhChHH
Q psy3781 129 LSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPF 171 (183)
Q Consensus 129 l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~ 171 (183)
++.|.+...|+.+..+.++..|+..+|....++-+.+......
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~a 149 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPA 149 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhccccHH
Confidence 9999999999988889999999999999988888866655443
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.88 E-value=7.4e-09 Score=83.09 Aligned_cols=90 Identities=33% Similarity=0.421 Sum_probs=56.2
Q ss_pred CCeEeCCCCCCC-CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc-cCChhccccCcccEEecc
Q psy3781 76 LRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR-KIPYELGLAQQLHHLNLV 153 (183)
Q Consensus 76 L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~-~~~~~~~~~~~L~~l~l~ 153 (183)
++.|++++|.+. .+|..+..+++|+.|++++|.+.+.. +..++.++.|+.|++++|.++ .+|..+..+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~i-P~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNI-PPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcC-ChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 455666666665 44555666666666666666666543 555666666666666666666 456666666666666666
Q ss_pred CCcCCCCcHHHhh
Q psy3781 154 GNCFKYPRQDILQ 166 (183)
Q Consensus 154 ~n~~~~~~~~~~~ 166 (183)
+|.+.+..+..+.
T Consensus 499 ~N~l~g~iP~~l~ 511 (623)
T PLN03150 499 GNSLSGRVPAALG 511 (623)
T ss_pred CCcccccCChHHh
Confidence 6666665555443
No 41
>KOG0531|consensus
Probab=98.87 E-value=2.7e-10 Score=87.30 Aligned_cols=127 Identities=31% Similarity=0.404 Sum_probs=81.1
Q ss_pred CCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCCC
Q psy3781 6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNK 85 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~ 85 (183)
..++.+.+..+.+..+...+..+.+++.+++.+|++..+...+..+++|++|++++|.|+++.....++.|+.|++.+|.
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNL 151 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCc
Confidence 34444555555555544555566777777777777776655566677777777777777776665555557777777777
Q ss_pred CCCcchhccCCCCCcEEEcCCCccccccCc-hhhhcCCCccEEeCCCCCCc
Q psy3781 86 FQQIPKCIFHLDNLEILILNNNDIEEINQP-EKLVKMQKLTVLDLSNNNIR 135 (183)
Q Consensus 86 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~-~~~~~~~~L~~l~l~~n~l~ 135 (183)
++.+.. +..+..++.+++++|.+..+. . . ...+..++.+++.+|.+.
T Consensus 152 i~~~~~-~~~l~~L~~l~l~~n~i~~ie-~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 152 ISDISG-LESLKSLKLLDLSYNRIVDIE-NDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred chhccC-CccchhhhcccCCcchhhhhh-hhh-hhhccchHHHhccCCchh
Confidence 776632 333566777777777776663 2 1 455666666666666554
No 42
>KOG0531|consensus
Probab=98.86 E-value=3.2e-10 Score=86.85 Aligned_cols=159 Identities=31% Similarity=0.334 Sum_probs=114.4
Q ss_pred CCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeC
Q psy3781 2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNL 81 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l 81 (183)
+..+.+++.+++.+|.|..+...+..+++|+++++++|.|+.+. .+..++.|+.|++.+|.+..+.....+..++.+++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISGLESLKSLKLLDL 169 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccCCccchhhhcccC
Confidence 45678899999999999988776777899999999999999763 35556679999999999988776667888999999
Q ss_pred CCCCCCCcchh-ccCCCCCcEEEcCCCccccccCchhhhcC-------------------C--CccEEeCCCCCCccCCh
Q psy3781 82 SSNKFQQIPKC-IFHLDNLEILILNNNDIEEINQPEKLVKM-------------------Q--KLTVLDLSNNNIRKIPY 139 (183)
Q Consensus 82 ~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~-------------------~--~L~~l~l~~n~l~~~~~ 139 (183)
++|.+..+... ...+.+++.+.+.+|.+..+........+ . .|+.+++++|.+..++.
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~ 249 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPE 249 (414)
T ss_pred CcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccccc
Confidence 99999877552 34567788888888877654211111110 1 15666667776666654
Q ss_pred hccccCcccEEeccCCcCCCCc
Q psy3781 140 ELGLAQQLHHLNLVGNCFKYPR 161 (183)
Q Consensus 140 ~~~~~~~L~~l~l~~n~~~~~~ 161 (183)
.+..+..+..+++.+|.+....
T Consensus 250 ~~~~~~~l~~l~~~~n~~~~~~ 271 (414)
T KOG0531|consen 250 GLENLKNLPVLDLSSNRISNLE 271 (414)
T ss_pred cccccccccccchhhccccccc
Confidence 5566666777777766554443
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.86 E-value=1.7e-08 Score=80.99 Aligned_cols=102 Identities=29% Similarity=0.479 Sum_probs=47.1
Q ss_pred CceEEcCCCccc-cccCcc-ccCCCCeEeCCCCCCC-CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCC
Q psy3781 54 LVYMNLENNKLE-TIDIDF-NFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLS 130 (183)
Q Consensus 54 L~~L~l~~n~l~-~~~~~~-~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~ 130 (183)
++.|++++|.+. .++..+ .+.+|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.. +..++.+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chHHhcCCCCCEEECc
Confidence 444455555444 223233 4445555555555554 34444444555555555555554433 4445555555555555
Q ss_pred CCCCc-cCChhcccc-CcccEEeccCCc
Q psy3781 131 NNNIR-KIPYELGLA-QQLHHLNLVGNC 156 (183)
Q Consensus 131 ~n~l~-~~~~~~~~~-~~L~~l~l~~n~ 156 (183)
+|.++ .+|..+... .++..+++.+|+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 55544 444443321 233344444443
No 44
>KOG2982|consensus
Probab=98.80 E-value=2.7e-09 Score=76.26 Aligned_cols=155 Identities=21% Similarity=0.239 Sum_probs=79.8
Q ss_pred CCCccEEecCCCcce---ecccccccCCCccEEEcCCCcCCCCCccc-cCCCCCceEEcCCCccccc--cCcc-ccCCCC
Q psy3781 5 EAQVEQADLSYNRLH---VVNSKLFDITSIRELDLSHNLIQNLPPDL-LNLRHLVYMNLENNKLETI--DIDF-NFGHLR 77 (183)
Q Consensus 5 ~~~l~~l~l~~~~i~---~l~~~~~~~~~l~~l~l~~~~l~~l~~~~-~~~~~L~~L~l~~n~l~~~--~~~~-~~~~L~ 77 (183)
++.++.+|+.+|.|+ ++...+.++|.++.|+++.|++..--..+ ....+|++|.+.++.+.+- .... .++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 445556666666655 23333335666666666666555211112 1234455555555544321 1122 444444
Q ss_pred eEeCCCCCCC---------------------------C---cchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEE
Q psy3781 78 ELNLSSNKFQ---------------------------Q---IPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127 (183)
Q Consensus 78 ~L~l~~~~~~---------------------------~---~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l 127 (183)
+++++.|++. . +-.-...++++..+.++.|++.+......+...+.+..|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 4444444211 0 000011246677777777777665434455556666677
Q ss_pred eCCCCCCccCCh--hccccCcccEEeccCCcCCC
Q psy3781 128 DLSNNNIRKIPY--ELGLAQQLHHLNLVGNCFKY 159 (183)
Q Consensus 128 ~l~~n~l~~~~~--~~~~~~~L~~l~l~~n~~~~ 159 (183)
+++.+++.+... .+.+++.++.+.+.++++..
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 777777765432 26667777777777776543
No 45
>KOG1859|consensus
Probab=98.77 E-value=6.1e-11 Score=93.36 Aligned_cols=128 Identities=26% Similarity=0.268 Sum_probs=87.1
Q ss_pred CccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCcc
Q psy3781 30 SIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDI 109 (183)
Q Consensus 30 ~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 109 (183)
+|...++++|.+.....+++-++.++.|+++.|+++++.....+++|++||+++|.+..+|..-..-..|..|.+++|.+
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l 244 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNAL 244 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHH
Confidence 56667777777776666666677788888888877777632277778888888887777655322233477777777777
Q ss_pred ccccCchhhhcCCCccEEeCCCCCCccCCh--hccccCcccEEeccCCcCCCC
Q psy3781 110 EEINQPEKLVKMQKLTVLDLSNNNIRKIPY--ELGLAQQLHHLNLVGNCFKYP 160 (183)
Q Consensus 110 ~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~--~~~~~~~L~~l~l~~n~~~~~ 160 (183)
+.+ ..+.++.+|+.||++.|.+.+... .++.+..|+.|.+.||++-.-
T Consensus 245 ~tL---~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 245 TTL---RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred Hhh---hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 765 455667777777888777664432 255666777778877776443
No 46
>KOG1859|consensus
Probab=98.76 E-value=7.2e-11 Score=92.96 Aligned_cols=152 Identities=24% Similarity=0.307 Sum_probs=97.9
Q ss_pred CCCCccEEecCCCcceecccccccC-CCccEEEcCCCcCCCCC-------ccccC---CCCCceEEcCCCccccccCcc-
Q psy3781 4 KEAQVEQADLSYNRLHVVNSKLFDI-TSIRELDLSHNLIQNLP-------PDLLN---LRHLVYMNLENNKLETIDIDF- 71 (183)
Q Consensus 4 ~~~~l~~l~l~~~~i~~l~~~~~~~-~~l~~l~l~~~~l~~l~-------~~~~~---~~~L~~L~l~~n~l~~~~~~~- 71 (183)
.+.+|+.|.+.++.+... .++..+ ..|+.| +-.+.++.+. ..+.+ ...|.+.++++|.+..+...+
T Consensus 107 pF~sLr~LElrg~~L~~~-~GL~~lr~qLe~L-IC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLq 184 (1096)
T KOG1859|consen 107 PFRSLRVLELRGCDLSTA-KGLQELRHQLEKL-ICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQ 184 (1096)
T ss_pred cccceeeEEecCcchhhh-hhhHHHHHhhhhh-hhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHH
Confidence 456788888888877742 112111 233333 2222222111 11221 336777788888887777777
Q ss_pred ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEe
Q psy3781 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLN 151 (183)
Q Consensus 72 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~ 151 (183)
-++.+++|+++.|+++.+. .+..++.|++|+++.|.++.++ -....+++ |..|.+++|.++.+- .+.++.+|+.||
T Consensus 185 ll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp-~l~~~gc~-L~~L~lrnN~l~tL~-gie~LksL~~LD 260 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVP-QLSMVGCK-LQLLNLRNNALTTLR-GIENLKSLYGLD 260 (1096)
T ss_pred HHHHhhhhccchhhhhhhH-HHHhcccccccccccchhcccc-ccchhhhh-heeeeecccHHHhhh-hHHhhhhhhccc
Confidence 6778888888888888775 5667788888888888888774 23333344 888888888887763 367788888888
Q ss_pred ccCCcCCCCc
Q psy3781 152 LVGNCFKYPR 161 (183)
Q Consensus 152 l~~n~~~~~~ 161 (183)
+++|.+.+-.
T Consensus 261 lsyNll~~hs 270 (1096)
T KOG1859|consen 261 LSYNLLSEHS 270 (1096)
T ss_pred hhHhhhhcch
Confidence 8888765543
No 47
>KOG4658|consensus
Probab=98.70 E-value=5.7e-09 Score=86.07 Aligned_cols=159 Identities=23% Similarity=0.341 Sum_probs=77.1
Q ss_pred CCccEEecCCCc--ceecccccc-cCCCccEEEcCCC-cCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEe
Q psy3781 6 AQVEQADLSYNR--LHVVNSKLF-DITSIRELDLSHN-LIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELN 80 (183)
Q Consensus 6 ~~l~~l~l~~~~--i~~l~~~~~-~~~~l~~l~l~~~-~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~ 80 (183)
+.+++|-+..+. +..++..++ .++.|+.|++++| .+..+|..++.+-+|++|+++++.+..+|.++ .+..|.+|+
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheec
Confidence 345555555543 344444433 3555555555554 34455555555555555555555555555555 555555555
Q ss_pred CCCCCCC-CcchhccCCCCCcEEEcCCCccc-cccCchhhhcCCCccE--------------------------EeCCCC
Q psy3781 81 LSSNKFQ-QIPKCIFHLDNLEILILNNNDIE-EINQPEKLVKMQKLTV--------------------------LDLSNN 132 (183)
Q Consensus 81 l~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~~~L~~--------------------------l~l~~n 132 (183)
+..+... .++.....+++|++|.+...... +......+..+..|+. +.+.++
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~ 704 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC 704 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc
Confidence 5554332 22222223555555554333211 0000111122222222 222222
Q ss_pred CCccCChhccccCcccEEeccCCcCCCCcHHH
Q psy3781 133 NIRKIPYELGLAQQLHHLNLVGNCFKYPRQDI 164 (183)
Q Consensus 133 ~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 164 (183)
.....+..+..+.+|+.|.+.++.+.......
T Consensus 705 ~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~ 736 (889)
T KOG4658|consen 705 SKRTLISSLGSLGNLEELSILDCGISEIVIEW 736 (889)
T ss_pred ccceeecccccccCcceEEEEcCCCchhhccc
Confidence 33344455677888999999988876554433
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.61 E-value=3.8e-08 Score=50.74 Aligned_cols=36 Identities=44% Similarity=0.547 Sum_probs=16.2
Q ss_pred CccEEeCCCCCCccCChhccccCcccEEeccCCcCC
Q psy3781 123 KLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFK 158 (183)
Q Consensus 123 ~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~ 158 (183)
+|++|++++|.|+++|..++.+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 344444444444444444444444444444444444
No 49
>KOG1644|consensus
Probab=98.57 E-value=1.7e-07 Score=63.53 Aligned_cols=102 Identities=28% Similarity=0.386 Sum_probs=64.0
Q ss_pred CccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCCCcch--hccCCCCCcEEEcC
Q psy3781 30 SIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQIPK--CIFHLDNLEILILN 105 (183)
Q Consensus 30 ~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~l~l~ 105 (183)
....++|++|.+..+ +.|..++.|.+|.+++|.|+.+.+.+ .++.+..|.+.+|++..+.. .+..+++|+.|.+-
T Consensus 43 ~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 455667777766654 34566677777777777777777766 55667777777777765533 34456677777777
Q ss_pred CCccccccC--chhhhcCCCccEEeCCCC
Q psy3781 106 NNDIEEINQ--PEKLVKMQKLTVLDLSNN 132 (183)
Q Consensus 106 ~n~~~~~~~--~~~~~~~~~L~~l~l~~n 132 (183)
+|+++.... .-.+..+++|++||+.+-
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhh
Confidence 777654321 122334567777776654
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.53 E-value=1.2e-07 Score=48.85 Aligned_cols=35 Identities=31% Similarity=0.500 Sum_probs=14.4
Q ss_pred ccEEecCCCcceecccccccCCCccEEEcCCCcCC
Q psy3781 8 VEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQ 42 (183)
Q Consensus 8 l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~ 42 (183)
|++|++++|.|+++++.+..+++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 44444444444444443444444444444444443
No 51
>KOG3665|consensus
Probab=98.45 E-value=1e-07 Score=77.04 Aligned_cols=138 Identities=21% Similarity=0.235 Sum_probs=92.7
Q ss_pred CCccEEEcCCCcCC---CCCccccCCCCCceEEcCCCcccccc--Ccc-ccCCCCeEeCCCCCCCCcchhccCCCCCcEE
Q psy3781 29 TSIRELDLSHNLIQ---NLPPDLLNLRHLVYMNLENNKLETID--IDF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEIL 102 (183)
Q Consensus 29 ~~l~~l~l~~~~l~---~l~~~~~~~~~L~~L~l~~n~l~~~~--~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l 102 (183)
.+|++|+++|...- +.......+|.|+.|.+++-.+..-. ... ++++|..||+++++++.+ .++.++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 36788888775322 11111234788888888887665322 222 778888888888888877 667778888888
Q ss_pred EcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh-------hccccCcccEEeccCCcCCCCcHHHhhh
Q psy3781 103 ILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY-------ELGLAQQLHHLNLVGNCFKYPRQDILQK 167 (183)
Q Consensus 103 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-------~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 167 (183)
.+.+-.+..-.....+.++++|+.||++......-+. .-..+|.|+.||.+++.+.+...+.+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~ 272 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN 272 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence 8877777653335667778888888888876553331 1245788888888887776666555444
No 52
>KOG2120|consensus
Probab=98.43 E-value=5.7e-09 Score=74.68 Aligned_cols=155 Identities=20% Similarity=0.139 Sum_probs=97.8
Q ss_pred CCCCCCccEEecCCCcce-ecccccccCCCccEEEcCCC-cCCCCC--ccccCCCCCceEEcCCCccccc--cCcc--cc
Q psy3781 2 IAKEAQVEQADLSYNRLH-VVNSKLFDITSIRELDLSHN-LIQNLP--PDLLNLRHLVYMNLENNKLETI--DIDF--NF 73 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~-~l~~~~~~~~~l~~l~l~~~-~l~~l~--~~~~~~~~L~~L~l~~n~l~~~--~~~~--~~ 73 (183)
+..|.+|+.+.++++.+. .+...+.+..+|+.+++++| .+++-. -.+..++.|..|.+++|.+..- .... --
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS 285 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence 345667777777777776 45555666778888888887 455322 2255677888888888875521 1111 33
Q ss_pred CCCCeEeCCCCCCC----CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc--cCChhccccCcc
Q psy3781 74 GHLRELNLSSNKFQ----QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR--KIPYELGLAQQL 147 (183)
Q Consensus 74 ~~L~~L~l~~~~~~----~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~--~~~~~~~~~~~L 147 (183)
.+++.|+++|+.-. ++.--...++++..|+++++.--.......+...+.|+++.++.|..- +.--.+...++|
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl 365 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSL 365 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcce
Confidence 56777788776322 333334467888888888775332232466667788888888877521 111125677888
Q ss_pred cEEeccCCc
Q psy3781 148 HHLNLVGNC 156 (183)
Q Consensus 148 ~~l~l~~n~ 156 (183)
.+|++.+.-
T Consensus 366 ~yLdv~g~v 374 (419)
T KOG2120|consen 366 VYLDVFGCV 374 (419)
T ss_pred EEEEecccc
Confidence 889888753
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.36 E-value=2.3e-07 Score=65.81 Aligned_cols=139 Identities=22% Similarity=0.221 Sum_probs=64.5
Q ss_pred cCCCccEEEcCCCcCC-CCC----ccccCCCCCceEEcCCCccccccCc--------------c-ccCCCCeEeCCCCCC
Q psy3781 27 DITSIRELDLSHNLIQ-NLP----PDLLNLRHLVYMNLENNKLETIDID--------------F-NFGHLRELNLSSNKF 86 (183)
Q Consensus 27 ~~~~l~~l~l~~~~l~-~l~----~~~~~~~~L~~L~l~~n~l~~~~~~--------------~-~~~~L~~L~l~~~~~ 86 (183)
.|++++.++++.|.+. ..| +.+...+.+.+|.+++|.+..+..+ + .-+.|+.+.+.+|++
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 3455555555555544 121 2234445555555555554432211 1 334555555555555
Q ss_pred CCcch-----hccCCCCCcEEEcCCCccccccCc----hhhhcCCCccEEeCCCCCCcc-----CChhccccCcccEEec
Q psy3781 87 QQIPK-----CIFHLDNLEILILNNNDIEEINQP----EKLVKMQKLTVLDLSNNNIRK-----IPYELGLAQQLHHLNL 152 (183)
Q Consensus 87 ~~~~~-----~~~~~~~L~~l~l~~n~~~~~~~~----~~~~~~~~L~~l~l~~n~l~~-----~~~~~~~~~~L~~l~l 152 (183)
...+. .+..-..++.+.+..|.|+..+.. ..+..+++|+.|++..|.++- +...+..++.|+.|.+
T Consensus 170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l 249 (388)
T COG5238 170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL 249 (388)
T ss_pred ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence 43221 111123455555555555443211 112234566666666666651 1222344445666666
Q ss_pred cCCcCCCCcHHHh
Q psy3781 153 VGNCFKYPRQDIL 165 (183)
Q Consensus 153 ~~n~~~~~~~~~~ 165 (183)
.+|-++..+...+
T Consensus 250 nDClls~~G~~~v 262 (388)
T COG5238 250 NDCLLSNEGVKSV 262 (388)
T ss_pred cchhhccccHHHH
Confidence 6666655554433
No 54
>KOG4658|consensus
Probab=98.33 E-value=4.1e-07 Score=75.39 Aligned_cols=145 Identities=24% Similarity=0.340 Sum_probs=93.0
Q ss_pred CccEEecCCCcceecccccccCCCccEEEcCCCc--CCCCCcc-ccCCCCCceEEcCCCc-cccccCcc-ccCCCCeEeC
Q psy3781 7 QVEQADLSYNRLHVVNSKLFDITSIRELDLSHNL--IQNLPPD-LLNLRHLVYMNLENNK-LETIDIDF-NFGHLRELNL 81 (183)
Q Consensus 7 ~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~--l~~l~~~-~~~~~~L~~L~l~~n~-l~~~~~~~-~~~~L~~L~l 81 (183)
.++.+.+.++.+..++... .+++++.|-+.++. +..++.. |..++.|++||+++|. +..+|... .+-+|++|++
T Consensus 524 ~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred heeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 3455555566655554433 24467777777775 4555554 5558888888888764 56777777 6778888888
Q ss_pred CCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc---cCChhccccCcccEEecc
Q psy3781 82 SSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR---KIPYELGLAQQLHHLNLV 153 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~---~~~~~~~~~~~L~~l~l~ 153 (183)
+++.+..+|.++..+..|.+|++..+...... +.....+++|++|.+...... .....+..+.+|+.+...
T Consensus 603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred cCCCccccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 88888888888888888888888766544332 455555778888777665422 112223445555555543
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.31 E-value=5.7e-06 Score=62.70 Aligned_cols=72 Identities=10% Similarity=0.183 Sum_probs=49.1
Q ss_pred CCCCccEEecCCCcceecccccccCCCccEEEcCCC-cCCCCCccccCCCCCceEEcCCC-ccccccCccccCCCCeEeC
Q psy3781 4 KEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHN-LIQNLPPDLLNLRHLVYMNLENN-KLETIDIDFNFGHLRELNL 81 (183)
Q Consensus 4 ~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~-~l~~l~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~L~~L~l 81 (183)
.+.+++.|++++|.+..+|. + -.+|+.|.+++| .++.+|..+ ..+|++|.+++| .+..+|. +|+.|++
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~-----sLe~L~L 119 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE-----SVRSLEI 119 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-----ccceEEe
Confidence 35778899999988888872 2 236888888885 556666544 257888888887 5555443 3566666
Q ss_pred CCCC
Q psy3781 82 SSNK 85 (183)
Q Consensus 82 ~~~~ 85 (183)
..+.
T Consensus 120 ~~n~ 123 (426)
T PRK15386 120 KGSA 123 (426)
T ss_pred CCCC
Confidence 5554
No 56
>KOG3665|consensus
Probab=98.22 E-value=8.6e-07 Score=71.78 Aligned_cols=129 Identities=17% Similarity=0.270 Sum_probs=93.0
Q ss_pred CCccEEecCCCcce--ecccccc-cCCCccEEEcCCCcCC--CCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeE
Q psy3781 6 AQVEQADLSYNRLH--VVNSKLF-DITSIRELDLSHNLIQ--NLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLREL 79 (183)
Q Consensus 6 ~~l~~l~l~~~~i~--~l~~~~~-~~~~l~~l~l~~~~l~--~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L 79 (183)
.+|+.|++++...- ..+..++ -+|.|+.|.+.+-.+. ++.....++++|..|||++++++.+ .+. .+.+|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 46788888886332 3444555 4899999999997765 3333345689999999999999888 344 88888888
Q ss_pred eCCCCCCCCcc--hhccCCCCCcEEEcCCCccccccC-----chhhhcCCCccEEeCCCCCCc
Q psy3781 80 NLSSNKFQQIP--KCIFHLDNLEILILNNNDIEEINQ-----PEKLVKMQKLTVLDLSNNNIR 135 (183)
Q Consensus 80 ~l~~~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~~-----~~~~~~~~~L~~l~l~~n~l~ 135 (183)
.+.+-.+.... ..++.+.+|+.||++......... .+.-..+|.|+.||.+++.++
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 88777666432 367789999999998876544310 122334789999999998876
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.20 E-value=1.4e-05 Score=51.16 Aligned_cols=96 Identities=19% Similarity=0.333 Sum_probs=33.3
Q ss_pred CccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCCCcchh-ccCCCCCcEEEcC
Q psy3781 30 SIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQIPKC-IFHLDNLEILILN 105 (183)
Q Consensus 30 ~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~ 105 (183)
+++.+.+.. .+..++.. |..+.+++.+.+.++ +..++... .+.+++.+.+.. .+..++.. +..+++++.+++.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 444444442 23333332 333334555554442 44444433 333455555543 33333332 2235555555554
Q ss_pred CCccccccCchhhhcCCCccEEeCCC
Q psy3781 106 NNDIEEINQPEKLVKMQKLTVLDLSN 131 (183)
Q Consensus 106 ~n~~~~~~~~~~~~~~~~L~~l~l~~ 131 (183)
.+ +..+. ...+.++ .++.+.+..
T Consensus 90 ~~-~~~i~-~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 90 SN-ITEIG-SSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TT--BEEH-TTTTTT--T--EEE-TT
T ss_pred cc-ccEEc-hhhhcCC-CceEEEECC
Confidence 43 43333 3444444 555555543
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.20 E-value=9.4e-07 Score=62.84 Aligned_cols=166 Identities=20% Similarity=0.256 Sum_probs=98.7
Q ss_pred CCCccEEecCCCcce-----ecccccccCCCccEEEcCCCcCC----CCCc-------cccCCCCCceEEcCCCccccc-
Q psy3781 5 EAQVEQADLSYNRLH-----VVNSKLFDITSIRELDLSHNLIQ----NLPP-------DLLNLRHLVYMNLENNKLETI- 67 (183)
Q Consensus 5 ~~~l~~l~l~~~~i~-----~l~~~~~~~~~l~~l~l~~~~l~----~l~~-------~~~~~~~L~~L~l~~n~l~~~- 67 (183)
+..+..+++++|.|. .+...+.+-.+|+..+++..-.. .+++ .+..+|+++.+++++|-+..-
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 556777788888777 33444445567777777665333 2222 244577788888888776622
Q ss_pred cCc----c-ccCCCCeEeCCCCCCCCcch--------------hccCCCCCcEEEcCCCccccccCchhhh----cCCCc
Q psy3781 68 DID----F-NFGHLRELNLSSNKFQQIPK--------------CIFHLDNLEILILNNNDIEEINQPEKLV----KMQKL 124 (183)
Q Consensus 68 ~~~----~-~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~L~~l~l~~n~~~~~~~~~~~~----~~~~L 124 (183)
+.. + ....+.+|.+++|.+..+.. ....-|.|+.+..++|++..-+ ...+. .-..|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs-~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS-KELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc-HHHHHHHHHhhcCc
Confidence 221 1 55667778888777663211 1223466777777777776543 22221 22367
Q ss_pred cEEeCCCCCCc--cCC----hhccccCcccEEeccCCcCCCCcHHHhhhChHH
Q psy3781 125 TVLDLSNNNIR--KIP----YELGLAQQLHHLNLVGNCFKYPRQDILQKGTPF 171 (183)
Q Consensus 125 ~~l~l~~n~l~--~~~----~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~ 171 (183)
+.+.+..|.|. .+. ..+..+.+|+.|++.+|-++-.+..++....+.
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~ 240 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE 240 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcc
Confidence 77777777665 111 114566777888888887777777776665444
No 59
>KOG2120|consensus
Probab=98.18 E-value=2.5e-08 Score=71.44 Aligned_cols=150 Identities=20% Similarity=0.236 Sum_probs=93.9
Q ss_pred CccEEecCCCcce--ecccccccCCCccEEEcCCCcCC-CCCccccCCCCCceEEcCCCc-cccccCcc---ccCCCCeE
Q psy3781 7 QVEQADLSYNRLH--VVNSKLFDITSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLENNK-LETIDIDF---NFGHLREL 79 (183)
Q Consensus 7 ~l~~l~l~~~~i~--~l~~~~~~~~~l~~l~l~~~~l~-~l~~~~~~~~~L~~L~l~~n~-l~~~~~~~---~~~~L~~L 79 (183)
.++.+|+++..|+ .+...+.++.+|+.+.+.++++. .+...+....+|+.++++.++ ++...... ++..|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4666777777766 45555566777777777777666 333345566778888887765 44333322 66778888
Q ss_pred eCCCCCCCC--cchhccC-CCCCcEEEcCCCcc--ccccCchhhhcCCCccEEeCCCCC-Cc-cCChhccccCcccEEec
Q psy3781 80 NLSSNKFQQ--IPKCIFH-LDNLEILILNNNDI--EEINQPEKLVKMQKLTVLDLSNNN-IR-KIPYELGLAQQLHHLNL 152 (183)
Q Consensus 80 ~l~~~~~~~--~~~~~~~-~~~L~~l~l~~n~~--~~~~~~~~~~~~~~L~~l~l~~n~-l~-~~~~~~~~~~~L~~l~l 152 (183)
+++||.+.. +--.+.+ -+++..|+++++.- ..-........++++.+||++++. ++ +.-..+..++.|+++.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 888886651 1111222 35677788877742 121214555678889999988874 44 22233567778888888
Q ss_pred cCCc
Q psy3781 153 VGNC 156 (183)
Q Consensus 153 ~~n~ 156 (183)
+.+.
T Consensus 346 sRCY 349 (419)
T KOG2120|consen 346 SRCY 349 (419)
T ss_pred hhhc
Confidence 8773
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.06 E-value=2.5e-05 Score=49.99 Aligned_cols=117 Identities=19% Similarity=0.357 Sum_probs=43.2
Q ss_pred CCCCCCccEEecCCCcceecccccc-cCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCC
Q psy3781 2 IAKEAQVEQADLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLR 77 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~l~~~~~-~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~ 77 (183)
|..+.+|+.+.+.. .+..+....+ .+.+++.+.+..+ +..++.. |.....++.+.+.+ .+..++... .+..++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 45555666666553 4555555544 3446666666553 4544443 33444566666644 444444433 355666
Q ss_pred eEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCc
Q psy3781 78 ELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKL 124 (183)
Q Consensus 78 ~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L 124 (183)
.+.+..+ +..++...+.-..++.+.+.. .+..+. ...|.++++|
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~~l~~i~~~~-~~~~i~-~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNCNLKEINIPS-NITKIE-ENAFKNCTKL 128 (129)
T ss_dssp EEEETTT--BEEHTTTTTT-T--EEE-TT-B-SS-----GGG-----
T ss_pred ccccCcc-ccEEchhhhcCCCceEEEECC-CccEEC-CccccccccC
Confidence 6666543 444443322222555555543 333333 3444444443
No 61
>KOG2982|consensus
Probab=98.05 E-value=6.9e-07 Score=64.26 Aligned_cols=83 Identities=28% Similarity=0.369 Sum_probs=59.8
Q ss_pred CCCccEEEcCCCcCC---CCCccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCC--CcchhccCCCCCc
Q psy3781 28 ITSIRELDLSHNLIQ---NLPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQ--QIPKCIFHLDNLE 100 (183)
Q Consensus 28 ~~~l~~l~l~~~~l~---~l~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~ 100 (183)
...++++++.+|.++ ++...+..+|.+++|.++.|++...-... ...+|+.|.+++..+. .....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 567888899999887 45555677899999999999877433322 5668888888888766 3334455677788
Q ss_pred EEEcCCCccc
Q psy3781 101 ILILNNNDIE 110 (183)
Q Consensus 101 ~l~l~~n~~~ 110 (183)
.+.++.|..+
T Consensus 150 elHmS~N~~r 159 (418)
T KOG2982|consen 150 ELHMSDNSLR 159 (418)
T ss_pred hhhhccchhh
Confidence 8888887443
No 62
>KOG2123|consensus
Probab=97.89 E-value=3.1e-07 Score=65.37 Aligned_cols=99 Identities=25% Similarity=0.248 Sum_probs=63.6
Q ss_pred CCCceEEcCCCccccccCccccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCC
Q psy3781 52 RHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131 (183)
Q Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~ 131 (183)
.+.+.|.+.+|.+.++..-..++.|+.|.++-|.++.+.+ +..+.+|+.|++..|.|.++.....+.++++|+.|++..
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 4456666777777666544467777777777777777643 445677777777777777765445566777777777777
Q ss_pred CCCcc--CCh----hccccCcccEEe
Q psy3781 132 NNIRK--IPY----ELGLAQQLHHLN 151 (183)
Q Consensus 132 n~l~~--~~~----~~~~~~~L~~l~ 151 (183)
|.-.. -+. .+..+++|+.||
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhcc
Confidence 75441 111 144556666554
No 63
>KOG2739|consensus
Probab=97.78 E-value=1.7e-05 Score=55.92 Aligned_cols=39 Identities=31% Similarity=0.504 Sum_probs=16.4
Q ss_pred CCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc
Q psy3781 97 DNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR 135 (183)
Q Consensus 97 ~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~ 135 (183)
++|+++++++|.+..+.-......+++|..|++..|..+
T Consensus 91 P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 444444444444443321223333344444444444433
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.53 E-value=0.00035 Score=53.24 Aligned_cols=117 Identities=21% Similarity=0.300 Sum_probs=73.9
Q ss_pred cCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCc-cccccCccccCCCCeEeCCCC-CCCCcchhccCCCCCcEEEc
Q psy3781 27 DITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNK-LETIDIDFNFGHLRELNLSSN-KFQQIPKCIFHLDNLEILIL 104 (183)
Q Consensus 27 ~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~L~~l~l 104 (183)
.+.+++.|++++|.++.+|. + .++|+.|.+++|. ++.++..+ ..+|++|.+++| .+..+|. +|+.|++
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L 119 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPE------SVRSLEI 119 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccccc------ccceEEe
Confidence 46889999999999998872 2 3469999998854 55555433 457999999988 6665554 3555555
Q ss_pred CCCcccccc-Cchhhhc------------------CCCccEEeCCCCCCccCChhccccCcccEEeccCC
Q psy3781 105 NNNDIEEIN-QPEKLVK------------------MQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155 (183)
Q Consensus 105 ~~n~~~~~~-~~~~~~~------------------~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n 155 (183)
..+....+. .|..+.. .++|++|++++|....+|.. -..+|+.|+++.+
T Consensus 120 ~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~--LP~SLk~L~ls~n 187 (426)
T PRK15386 120 KGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEK--LPESLQSITLHIE 187 (426)
T ss_pred CCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccc--ccccCcEEEeccc
Confidence 544322211 0221111 13677777777765555532 3557888887765
No 65
>KOG2739|consensus
Probab=97.22 E-value=0.00033 Score=49.62 Aligned_cols=87 Identities=23% Similarity=0.238 Sum_probs=60.8
Q ss_pred ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCcccccc-CchhhhcCCCccEEeCCCCCCccCC--hhccccCccc
Q psy3781 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEIN-QPEKLVKMQKLTVLDLSNNNIRKIP--YELGLAQQLH 148 (183)
Q Consensus 72 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~~~L~~l~l~~n~l~~~~--~~~~~~~~L~ 148 (183)
....++.+.+.+..++.+ ..+..+++|+.|.++.|...... +......+++|+++++++|.+..+. +.+..+.+|.
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 344555555666666655 23446789999999999544322 2455556799999999999988542 2367788899
Q ss_pred EEeccCCcCCC
Q psy3781 149 HLNLVGNCFKY 159 (183)
Q Consensus 149 ~l~l~~n~~~~ 159 (183)
.|++.+|..+.
T Consensus 120 ~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 120 SLDLFNCSVTN 130 (260)
T ss_pred hhhcccCCccc
Confidence 99999987766
No 66
>KOG2123|consensus
Probab=96.95 E-value=6.3e-05 Score=53.97 Aligned_cols=87 Identities=23% Similarity=0.192 Sum_probs=70.3
Q ss_pred cCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh--ccccCcccEE
Q psy3781 73 FGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE--LGLAQQLHHL 150 (183)
Q Consensus 73 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~--~~~~~~L~~l 150 (183)
+.+.+.|++-+|.++.+.- ...|+.|+.|.++-|.|+.+ ..+..|++|+.|++..|.|.++.+. +.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 4456778888888887733 44689999999999999886 5678899999999999999988654 7899999999
Q ss_pred eccCCcCCCCcHH
Q psy3781 151 NLVGNCFKYPRQD 163 (183)
Q Consensus 151 ~l~~n~~~~~~~~ 163 (183)
-+..|+=-+....
T Consensus 94 WL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 94 WLDENPCCGEAGQ 106 (388)
T ss_pred hhccCCcccccch
Confidence 9999876555443
No 67
>KOG4308|consensus
Probab=96.74 E-value=6.7e-06 Score=63.99 Aligned_cols=165 Identities=24% Similarity=0.249 Sum_probs=79.8
Q ss_pred CCCCCccEEecCCCcce-----ecccccccC-CCccEEEcCCCcCCC-----CCccccCCCCCceEEcCCCcccccc---
Q psy3781 3 AKEAQVEQADLSYNRLH-----VVNSKLFDI-TSIRELDLSHNLIQN-----LPPDLLNLRHLVYMNLENNKLETID--- 68 (183)
Q Consensus 3 ~~~~~l~~l~l~~~~i~-----~l~~~~~~~-~~l~~l~l~~~~l~~-----l~~~~~~~~~L~~L~l~~n~l~~~~--- 68 (183)
..+..++.|++++|.+. .+...+... ..++.+.+..|.++. +...+.....++.++++.|.+....
T Consensus 112 ~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~ 191 (478)
T KOG4308|consen 112 KTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLV 191 (478)
T ss_pred cccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHH
Confidence 33445555666665555 112222222 344445555555541 2222333455666666666553111
Q ss_pred --Cc----c-ccCCCCeEeCCCCCCCC-----cchhccCCCC-CcEEEcCCCccccccCc---hhhhcC-CCccEEeCCC
Q psy3781 69 --ID----F-NFGHLRELNLSSNKFQQ-----IPKCIFHLDN-LEILILNNNDIEEINQP---EKLVKM-QKLTVLDLSN 131 (183)
Q Consensus 69 --~~----~-~~~~L~~L~l~~~~~~~-----~~~~~~~~~~-L~~l~l~~n~~~~~~~~---~~~~~~-~~L~~l~l~~ 131 (183)
.. + ...+++++.+++|.++. +...+...+. +..+++..|.+.+.+.. ..+..+ ..++.+++..
T Consensus 192 l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ 271 (478)
T KOG4308|consen 192 LSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSR 271 (478)
T ss_pred HhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhc
Confidence 11 1 24455666666666551 1112222233 44466666666554311 222222 3456677777
Q ss_pred CCCc-----cCChhccccCcccEEeccCCcCCCCcHHHhhh
Q psy3781 132 NNIR-----KIPYELGLAQQLHHLNLVGNCFKYPRQDILQK 167 (183)
Q Consensus 132 n~l~-----~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 167 (183)
|.++ .+.+.+..++.++.+.+..|++.........+
T Consensus 272 nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~ 312 (478)
T KOG4308|consen 272 NSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLE 312 (478)
T ss_pred CCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHH
Confidence 7666 23444556666777777777766665554433
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.72 E-value=0.00067 Score=29.16 Aligned_cols=15 Identities=47% Similarity=0.419 Sum_probs=6.1
Q ss_pred cEEecCCCcceeccc
Q psy3781 9 EQADLSYNRLHVVNS 23 (183)
Q Consensus 9 ~~l~l~~~~i~~l~~ 23 (183)
++|++++|.++.+|+
T Consensus 3 ~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 3 EYLDLSGNNLTSIPS 17 (22)
T ss_dssp SEEEETSSEESEEGT
T ss_pred cEEECCCCcCEeCCh
Confidence 344444444443333
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.47 E-value=0.0021 Score=27.55 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=17.9
Q ss_pred CccEEEcCCCcCCCCCccccC
Q psy3781 30 SIRELDLSHNLIQNLPPDLLN 50 (183)
Q Consensus 30 ~l~~l~l~~~~l~~l~~~~~~ 50 (183)
+|++|++++|+++.+|+.|.+
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 589999999999999887654
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.07 E-value=0.0036 Score=25.02 Aligned_cols=12 Identities=58% Similarity=0.811 Sum_probs=3.5
Q ss_pred ccEEeCCCCCCc
Q psy3781 124 LTVLDLSNNNIR 135 (183)
Q Consensus 124 L~~l~l~~n~l~ 135 (183)
|+.|++++|.++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 333444444333
No 71
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.52 E-value=0.011 Score=26.30 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=11.7
Q ss_pred CCccEEecCCCcceecccccc
Q psy3781 6 AQVEQADLSYNRLHVVNSKLF 26 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l~~~~~ 26 (183)
++|+.|++++|.+..+|++++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455556666666655555543
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.52 E-value=0.011 Score=26.30 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=11.7
Q ss_pred CCccEEecCCCcceecccccc
Q psy3781 6 AQVEQADLSYNRLHVVNSKLF 26 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l~~~~~ 26 (183)
++|+.|++++|.+..+|++++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455556666666655555543
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.44 E-value=0.018 Score=25.56 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=12.5
Q ss_pred CcccEEeccCCcCCCCcHHHhh
Q psy3781 145 QQLHHLNLVGNCFKYPRQDILQ 166 (183)
Q Consensus 145 ~~L~~l~l~~n~~~~~~~~~~~ 166 (183)
++|+.|++++|.+...+..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 3455666666666666555543
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.44 E-value=0.018 Score=25.56 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=12.5
Q ss_pred CcccEEeccCCcCCCCcHHHhh
Q psy3781 145 QQLHHLNLVGNCFKYPRQDILQ 166 (183)
Q Consensus 145 ~~L~~l~l~~n~~~~~~~~~~~ 166 (183)
++|+.|++++|.+...+..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 3455666666666666555543
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.70 E-value=0.0091 Score=26.05 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=13.3
Q ss_pred cCcccEEeccCCcCCCCcHHHhh
Q psy3781 144 AQQLHHLNLVGNCFKYPRQDILQ 166 (183)
Q Consensus 144 ~~~L~~l~l~~n~~~~~~~~~~~ 166 (183)
+++|+.|++++|.|++.+...+.
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 35677777777777666655543
No 76
>KOG4308|consensus
Probab=94.60 E-value=0.00033 Score=54.78 Aligned_cols=164 Identities=24% Similarity=0.239 Sum_probs=107.6
Q ss_pred ccEEecCCCcce-----ecccccccCCCccEEEcCCCcCCC-----CCccccCC-CCCceEEcCCCccccccCc-----c
Q psy3781 8 VEQADLSYNRLH-----VVNSKLFDITSIRELDLSHNLIQN-----LPPDLLNL-RHLVYMNLENNKLETIDID-----F 71 (183)
Q Consensus 8 l~~l~l~~~~i~-----~l~~~~~~~~~l~~l~l~~~~l~~-----l~~~~~~~-~~L~~L~l~~n~l~~~~~~-----~ 71 (183)
+..+++.+|.+. .+...+...+.+..+++++|.+.. +...+... +.+++|++..|.++..... +
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 566777777766 334444567788999999998872 11222222 4677888888887744332 2
Q ss_pred -ccCCCCeEeCCCCCCC-----Ccchhc----cCCCCCcEEEcCCCccccccC---chhhhcCCC-ccEEeCCCCCCccC
Q psy3781 72 -NFGHLRELNLSSNKFQ-----QIPKCI----FHLDNLEILILNNNDIEEINQ---PEKLVKMQK-LTVLDLSNNNIRKI 137 (183)
Q Consensus 72 -~~~~L~~L~l~~~~~~-----~~~~~~----~~~~~L~~l~l~~n~~~~~~~---~~~~~~~~~-L~~l~l~~n~l~~~ 137 (183)
....++.++++.|.+. .++..+ ....+++++.+.+|.++.... ...+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 4567888888888774 122222 246778889999988875431 122223333 55688888877633
Q ss_pred -----Chhcccc-CcccEEeccCCcCCCCcHHHhhhChHH
Q psy3781 138 -----PYELGLA-QQLHHLNLVGNCFKYPRQDILQKGTPF 171 (183)
Q Consensus 138 -----~~~~~~~-~~L~~l~l~~n~~~~~~~~~~~~~~~~ 171 (183)
.+.+..+ ..++.+++..|.+...+...+.+....
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~ 288 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVS 288 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhh
Confidence 3445566 678999999999999998887776443
No 77
>KOG1947|consensus
Probab=94.49 E-value=0.01 Score=46.41 Aligned_cols=61 Identities=26% Similarity=0.285 Sum_probs=27.3
Q ss_pred cCCCCeEeCCCCC-CCCcc-hhcc-CCCCCcEEEcCCCc-cccccCchhhhcCCCccEEeCCCCC
Q psy3781 73 FGHLRELNLSSNK-FQQIP-KCIF-HLDNLEILILNNND-IEEINQPEKLVKMQKLTVLDLSNNN 133 (183)
Q Consensus 73 ~~~L~~L~l~~~~-~~~~~-~~~~-~~~~L~~l~l~~n~-~~~~~~~~~~~~~~~L~~l~l~~n~ 133 (183)
+.++++++++++. ++... ..+. .+++|+.|.+.++. +++.+.......++.|+.++++++.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 3455555555554 33211 1111 14455555555444 4444423333345555555555543
No 78
>KOG4341|consensus
Probab=93.89 E-value=0.016 Score=44.13 Aligned_cols=147 Identities=16% Similarity=0.187 Sum_probs=88.8
Q ss_pred CCccEEecCCC-ccee--cccccccCCCccEEEcCCCcCCCCCcc-----ccCCCCCceEEcCCCc-cccccCc--c-cc
Q psy3781 6 AQVEQADLSYN-RLHV--VNSKLFDITSIRELDLSHNLIQNLPPD-----LLNLRHLVYMNLENNK-LETIDID--F-NF 73 (183)
Q Consensus 6 ~~l~~l~l~~~-~i~~--l~~~~~~~~~l~~l~l~~~~l~~l~~~-----~~~~~~L~~L~l~~n~-l~~~~~~--~-~~ 73 (183)
..+..+++.+| .+++ +......+..++.+..+++.. +++. ..+.++|+.+.+.+|+ +++.... . .+
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~--~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~ 345 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD--ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNC 345 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC--CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCC
Confidence 33445555454 3442 222222466778887777743 2221 3356788999988886 4433222 1 67
Q ss_pred CCCCeEeCCCCCCCC---cchhccCCCCCcEEEcCCCcc-ccccCchhh----hcCCCccEEeCCCCCCc--cCChhccc
Q psy3781 74 GHLRELNLSSNKFQQ---IPKCIFHLDNLEILILNNNDI-EEINQPEKL----VKMQKLTVLDLSNNNIR--KIPYELGL 143 (183)
Q Consensus 74 ~~L~~L~l~~~~~~~---~~~~~~~~~~L~~l~l~~n~~-~~~~~~~~~----~~~~~L~~l~l~~n~l~--~~~~~~~~ 143 (183)
+.|+.+++.++.... +..--.+++.|+.+.++++.. ++.+ ...+ .+...++.+-++++..+ .....+..
T Consensus 346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~g-i~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEG-IRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhh-hhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 788888888876552 333333578888888887754 3332 1222 23456888888888755 34455778
Q ss_pred cCcccEEeccCC
Q psy3781 144 AQQLHHLNLVGN 155 (183)
Q Consensus 144 ~~~L~~l~l~~n 155 (183)
+++|+.+++-++
T Consensus 425 c~~Leri~l~~~ 436 (483)
T KOG4341|consen 425 CRNLERIELIDC 436 (483)
T ss_pred Ccccceeeeech
Confidence 888888887765
No 79
>KOG1947|consensus
Probab=93.44 E-value=0.026 Score=44.13 Aligned_cols=109 Identities=20% Similarity=0.179 Sum_probs=74.0
Q ss_pred CCCCCceEEcCCCc-ccc--ccCcc-ccCCCCeEeCCCC--CCCCcc----hhccCCCCCcEEEcCCCc-cccccCchhh
Q psy3781 50 NLRHLVYMNLENNK-LET--IDIDF-NFGHLRELNLSSN--KFQQIP----KCIFHLDNLEILILNNND-IEEINQPEKL 118 (183)
Q Consensus 50 ~~~~L~~L~l~~n~-l~~--~~~~~-~~~~L~~L~l~~~--~~~~~~----~~~~~~~~L~~l~l~~n~-~~~~~~~~~~ 118 (183)
..+.++.+.+.++. +.. +.... ..+.|+.++++++ .+...+ .....+.+++.++++++. +++.+.....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 36778888888774 443 22333 7889999999873 222111 122236889999999988 7777633333
Q ss_pred hcCCCccEEeCCCCC-Cc--cCChhccccCcccEEeccCCcCC
Q psy3781 119 VKMQKLTVLDLSNNN-IR--KIPYELGLAQQLHHLNLVGNCFK 158 (183)
Q Consensus 119 ~~~~~L~~l~l~~n~-l~--~~~~~~~~~~~L~~l~l~~n~~~ 158 (183)
..+++|+.+.+.++. ++ .+......+++|+.|+++++...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 348999999988776 66 34444677889999999987544
No 80
>KOG0473|consensus
Probab=93.08 E-value=0.0015 Score=45.90 Aligned_cols=82 Identities=21% Similarity=0.205 Sum_probs=44.7
Q ss_pred CCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCC
Q psy3781 28 ITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNN 106 (183)
Q Consensus 28 ~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~ 106 (183)
+...+.|+++.|++-.+...|+-++.+..++++.|.+..+|.++ +...++.++...|+.++.|..+...+.+++++.-+
T Consensus 41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred cceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhcc
Confidence 34455555555555555555555555555555555555555555 44445555555555555555555555555555555
Q ss_pred Ccc
Q psy3781 107 NDI 109 (183)
Q Consensus 107 n~~ 109 (183)
+.+
T Consensus 121 ~~~ 123 (326)
T KOG0473|consen 121 TEF 123 (326)
T ss_pred Ccc
Confidence 543
No 81
>KOG4341|consensus
Probab=92.80 E-value=0.042 Score=42.00 Aligned_cols=146 Identities=21% Similarity=0.124 Sum_probs=92.4
Q ss_pred CCCccEEecCCC-ccee-cccccc-cCCCccEEEcCCCc-CCC--CCccccCCCCCceEEcCCCccccc---cCcc-ccC
Q psy3781 5 EAQVEQADLSYN-RLHV-VNSKLF-DITSIRELDLSHNL-IQN--LPPDLLNLRHLVYMNLENNKLETI---DIDF-NFG 74 (183)
Q Consensus 5 ~~~l~~l~l~~~-~i~~-l~~~~~-~~~~l~~l~l~~~~-l~~--l~~~~~~~~~L~~L~l~~n~l~~~---~~~~-~~~ 74 (183)
+..++.++.+++ .++. .-..+. +.++|+.+.+.+|+ ++. +...-.+.+.|+.+++.++....- .... ..+
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 456777777776 4442 222333 67899999999985 442 222234577899999988875422 2222 778
Q ss_pred CCCeEeCCCCCCC------CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCC-Cc--cCChhccccC
Q psy3781 75 HLRELNLSSNKFQ------QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNN-IR--KIPYELGLAQ 145 (183)
Q Consensus 75 ~L~~L~l~~~~~~------~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~-l~--~~~~~~~~~~ 145 (183)
.++.+.++.+... .+......+..+..+.+.+++.......+.+..++.|+.+++-+++ ++ .+.+.-.+++
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp 452 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLP 452 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCc
Confidence 8999999877433 2223333467788888988887654435777788899988887764 33 2333344566
Q ss_pred cccEE
Q psy3781 146 QLHHL 150 (183)
Q Consensus 146 ~L~~l 150 (183)
++++.
T Consensus 453 ~i~v~ 457 (483)
T KOG4341|consen 453 NIKVH 457 (483)
T ss_pred cceeh
Confidence 55543
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=92.52 E-value=0.1 Score=23.70 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=17.5
Q ss_pred CcccEEeccCCcCCCCcHHHhhh
Q psy3781 145 QQLHHLNLVGNCFKYPRQDILQK 167 (183)
Q Consensus 145 ~~L~~l~l~~n~~~~~~~~~~~~ 167 (183)
++|++|++++|.+...+...+.+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 46788888888888777766654
No 83
>KOG0473|consensus
Probab=92.29 E-value=0.0026 Score=44.78 Aligned_cols=86 Identities=16% Similarity=0.235 Sum_probs=70.3
Q ss_pred ccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccE
Q psy3781 48 LLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126 (183)
Q Consensus 48 ~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~ 126 (183)
+..+...+.||++.|.+..+...+ -+..+..++++.|.+...|..+.+...++.++...|..+.. |.+++..+.++.
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~--p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQ--PKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhC--CccccccCCcch
Confidence 455778888999999888777777 67788889999998888888877777777777777877777 788888999999
Q ss_pred EeCCCCCCc
Q psy3781 127 LDLSNNNIR 135 (183)
Q Consensus 127 l~l~~n~l~ 135 (183)
++..++.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 998888765
No 84
>KOG3864|consensus
Probab=91.42 E-value=0.025 Score=38.97 Aligned_cols=79 Identities=22% Similarity=0.187 Sum_probs=45.5
Q ss_pred CCCeEeCCCCCCCCcc-hhccCCCCCcEEEcCCCc-cccccCchhhh-cCCCccEEeCCCC-CCccCC-hhccccCcccE
Q psy3781 75 HLRELNLSSNKFQQIP-KCIFHLDNLEILILNNND-IEEINQPEKLV-KMQKLTVLDLSNN-NIRKIP-YELGLAQQLHH 149 (183)
Q Consensus 75 ~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~-~~~~L~~l~l~~n-~l~~~~-~~~~~~~~L~~ 149 (183)
.++.++.+++.+.... ..+..++.++.|.+.++. +.+.. ..-++ -.++|+.|++++| .||+.. .++..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~-L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC-LERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH-HHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 4566777776655321 234455666666666653 33332 12222 3467888888877 466443 44677777777
Q ss_pred EeccC
Q psy3781 150 LNLVG 154 (183)
Q Consensus 150 l~l~~ 154 (183)
|++.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 77665
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=88.60 E-value=0.5 Score=21.07 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=5.5
Q ss_pred CCceEEcCCCccc
Q psy3781 53 HLVYMNLENNKLE 65 (183)
Q Consensus 53 ~L~~L~l~~n~l~ 65 (183)
+|+.|+++.|.|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 3444444444443
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=88.52 E-value=0.36 Score=21.53 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=12.2
Q ss_pred CCccEEeCCCCCCccCCh
Q psy3781 122 QKLTVLDLSNNNIRKIPY 139 (183)
Q Consensus 122 ~~L~~l~l~~n~l~~~~~ 139 (183)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356667777777777765
No 87
>KOG3763|consensus
Probab=82.92 E-value=0.87 Score=36.36 Aligned_cols=61 Identities=28% Similarity=0.283 Sum_probs=38.4
Q ss_pred ccCCCCeEeCCCCCCCCcc---hhccCCCCCcEEEcCCC--ccccccCchhhh--cCCCccEEeCCCCCCc
Q psy3781 72 NFGHLRELNLSSNKFQQIP---KCIFHLDNLEILILNNN--DIEEINQPEKLV--KMQKLTVLDLSNNNIR 135 (183)
Q Consensus 72 ~~~~L~~L~l~~~~~~~~~---~~~~~~~~L~~l~l~~n--~~~~~~~~~~~~--~~~~L~~l~l~~n~l~ 135 (183)
..+.+..+.+++|++..+. .-....|+|+.|+|++| .+... .++. ....|+.|.+.||.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~---~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE---SELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch---hhhhhhcCCCHHHeeecCCccc
Confidence 5566777788888777442 22224678888888888 33332 2222 2346788888888776
No 88
>KOG3864|consensus
Probab=81.98 E-value=1.2 Score=30.93 Aligned_cols=75 Identities=21% Similarity=0.164 Sum_probs=53.9
Q ss_pred CCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCC-CccC--ChhccccCcccEEeccCCc-CCCCcHHHhhhChHH
Q psy3781 96 LDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNN-IRKI--PYELGLAQQLHHLNLVGNC-FKYPRQDILQKGTPF 171 (183)
Q Consensus 96 ~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~-l~~~--~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~~ 171 (183)
-..++.++.++..|...+ ...+..++.++.+.+..+. +.+. ..--.-.++|+.|++++|+ |++.+...+.+-++.
T Consensus 100 ~~~IeaVDAsds~I~~eG-le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 100 NVKIEAVDASDSSIMYEG-LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred cceEEEEecCCchHHHHH-HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 345788999999998888 7888889999999887774 4422 1112346799999999984 777776665554433
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=71.23 E-value=3.3 Score=18.07 Aligned_cols=11 Identities=45% Similarity=0.486 Sum_probs=5.1
Q ss_pred CCccEEeCCCC
Q psy3781 122 QKLTVLDLSNN 132 (183)
Q Consensus 122 ~~L~~l~l~~n 132 (183)
++|+.|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
No 90
>KOG3763|consensus
Probab=66.47 E-value=4 Score=32.81 Aligned_cols=35 Identities=26% Similarity=0.244 Sum_probs=14.8
Q ss_pred CCCccEEEcCCCcCCCCC---ccccCCCCCceEEcCCC
Q psy3781 28 ITSIRELDLSHNLIQNLP---PDLLNLRHLVYMNLENN 62 (183)
Q Consensus 28 ~~~l~~l~l~~~~l~~l~---~~~~~~~~L~~L~l~~n 62 (183)
.+.+..+.+++|++..+. ...+..|++..|++++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 334444445555444221 11223444555555554
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=37.23 E-value=27 Score=34.18 Aligned_cols=31 Identities=35% Similarity=0.447 Sum_probs=24.1
Q ss_pred eCCCCCCCCcchhcc-CCCCCcEEEcCCCccc
Q psy3781 80 NLSSNKFQQIPKCIF-HLDNLEILILNNNDIE 110 (183)
Q Consensus 80 ~l~~~~~~~~~~~~~-~~~~L~~l~l~~n~~~ 110 (183)
+|++|+|+.++...+ .+++|+.|+|.+|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 578888988877444 5888999999888774
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=36.62 E-value=23 Score=34.51 Aligned_cols=31 Identities=26% Similarity=0.545 Sum_probs=25.2
Q ss_pred ecCCCcceecccccc-cCCCccEEEcCCCcCC
Q psy3781 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQ 42 (183)
Q Consensus 12 ~l~~~~i~~l~~~~~-~~~~l~~l~l~~~~l~ 42 (183)
||++|+|..++...+ .+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 578888888888877 5788889999888765
No 93
>TIGR02167 Liste_lipo_26 bacterial surface protein 26-residue repeat. This model describes a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, L. innocua, Enterococcus faecalis, Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=25.27 E-value=40 Score=14.81 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=8.1
Q ss_pred CCCCCCccEEecCC
Q psy3781 2 IAKEAQVEQADLSY 15 (183)
Q Consensus 2 l~~~~~l~~l~l~~ 15 (183)
|..+.++..|+++.
T Consensus 2 F~~~~~~~~ldls~ 15 (26)
T TIGR02167 2 FSGCSSLTSLDVSN 15 (26)
T ss_pred CCcccccccccccc
Confidence 45566666666554
Done!