Query psy3781
Match_columns 183
No_of_seqs 143 out of 1933
Neff 10.9
Searched_HMMs 29240
Date Fri Aug 16 17:14:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3781.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3781hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-22 5.7E-27 146.0 17.6 165 2-167 52-223 (285)
2 4fcg_A Uncharacterized protein 99.9 2.5E-23 8.4E-28 153.2 13.2 164 3-167 101-299 (328)
3 1p9a_G Platelet glycoprotein I 99.9 1.9E-22 6.4E-27 146.2 17.3 158 2-161 51-211 (290)
4 2o6q_A Variable lymphocyte rec 99.9 3.1E-22 1.1E-26 143.6 17.9 159 2-161 57-221 (270)
5 4fcg_A Uncharacterized protein 99.9 6.7E-23 2.3E-27 150.9 13.3 158 5-164 80-248 (328)
6 3rfs_A Internalin B, repeat mo 99.9 5.2E-22 1.8E-26 142.6 17.3 159 2-162 59-222 (272)
7 3m19_A Variable lymphocyte rec 99.9 9.6E-22 3.3E-26 139.6 17.5 156 6-162 35-196 (251)
8 2o6q_A Variable lymphocyte rec 99.9 1.1E-21 3.7E-26 140.8 17.3 161 6-167 37-203 (270)
9 1p9a_G Platelet glycoprotein I 99.9 7.9E-22 2.7E-26 142.9 15.6 159 6-166 31-193 (290)
10 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-21 4.7E-26 141.2 16.4 161 1-162 75-242 (285)
11 3rfs_A Internalin B, repeat mo 99.9 1.8E-21 6.2E-26 139.8 15.4 162 3-167 38-203 (272)
12 2z62_A TOLL-like receptor 4, v 99.9 1.5E-21 5.2E-26 140.3 14.5 159 2-161 48-240 (276)
13 2z66_A Variable lymphocyte rec 99.9 8.4E-22 2.9E-26 143.6 13.1 152 7-159 79-237 (306)
14 3m19_A Variable lymphocyte rec 99.9 4.9E-21 1.7E-25 136.0 16.5 159 6-167 14-177 (251)
15 1h6u_A Internalin H; cell adhe 99.9 6.1E-21 2.1E-25 139.3 17.0 152 3-161 60-211 (308)
16 1xeu_A Internalin C; cellular 99.9 1.1E-21 3.9E-26 140.2 12.6 155 2-164 37-191 (263)
17 1ogq_A PGIP-2, polygalacturona 99.9 5.9E-22 2E-26 145.0 10.9 69 93-163 217-286 (313)
18 1h6t_A Internalin B; cell adhe 99.9 3.5E-21 1.2E-25 139.6 14.8 153 3-162 65-217 (291)
19 3e6j_A Variable lymphocyte rec 99.9 1.3E-20 4.4E-25 132.1 17.0 152 7-162 20-176 (229)
20 2v70_A SLIT-2, SLIT homolog 2 99.9 7.1E-21 2.4E-25 132.7 15.5 152 8-162 13-170 (220)
21 2v9t_B SLIT homolog 2 protein 99.9 6.7E-21 2.3E-25 132.8 15.2 151 8-161 13-168 (220)
22 4ezg_A Putative uncharacterize 99.9 2E-21 6.8E-26 133.3 12.3 150 4-159 42-195 (197)
23 3zyj_A Leucine-rich repeat-con 99.9 4.2E-21 1.4E-25 146.5 15.2 163 2-166 84-276 (440)
24 2z66_A Variable lymphocyte rec 99.9 1.5E-21 5.1E-26 142.3 12.1 166 2-167 48-221 (306)
25 3zyi_A Leucine-rich repeat-con 99.9 7.7E-21 2.6E-25 145.5 15.7 162 2-165 95-286 (452)
26 1xku_A Decorin; proteoglycan, 99.9 1.7E-20 5.9E-25 138.0 16.7 164 2-167 72-285 (330)
27 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-20 3.8E-25 139.2 15.6 165 2-167 74-286 (332)
28 1ogq_A PGIP-2, polygalacturona 99.9 2.8E-21 9.4E-26 141.5 12.2 165 2-168 97-267 (313)
29 1h6u_A Internalin H; cell adhe 99.9 1E-20 3.5E-25 138.1 14.7 152 4-162 39-190 (308)
30 2z62_A TOLL-like receptor 4, v 99.9 1.2E-20 4.1E-25 135.7 13.4 160 7-166 29-221 (276)
31 3o6n_A APL1; leucine-rich repe 99.9 3.9E-20 1.3E-24 139.0 16.7 161 2-163 89-313 (390)
32 3rgz_A Protein brassinosteroid 99.9 1.2E-20 4E-25 152.9 14.3 89 74-163 632-722 (768)
33 3rgz_A Protein brassinosteroid 99.9 2.1E-20 7.3E-25 151.3 15.8 165 3-168 463-703 (768)
34 2xwt_C Thyrotropin receptor; s 99.9 4.7E-21 1.6E-25 135.1 10.4 161 2-164 51-224 (239)
35 2xwt_C Thyrotropin receptor; s 99.9 3E-21 1E-25 136.1 9.3 161 6-168 31-203 (239)
36 2xot_A Amphoterin-induced prot 99.8 3E-20 1E-24 138.5 15.2 157 9-168 21-186 (361)
37 1h6t_A Internalin B; cell adhe 99.8 2.7E-20 9.3E-25 134.9 14.5 153 3-162 43-195 (291)
38 2o6s_A Variable lymphocyte rec 99.8 1E-19 3.5E-24 125.7 16.5 152 8-162 9-165 (208)
39 3zyj_A Leucine-rich repeat-con 99.8 4.7E-20 1.6E-24 140.7 15.8 159 2-161 108-295 (440)
40 1m9s_A Internalin B; cell inva 99.8 2.9E-20 1E-24 146.6 14.9 155 2-163 61-215 (605)
41 3oja_B Anopheles plasmodium-re 99.8 6.1E-20 2.1E-24 145.0 16.7 161 2-163 95-319 (597)
42 3o53_A Protein LRIM1, AGAP0063 99.8 2.5E-20 8.4E-25 136.6 13.3 170 3-175 77-268 (317)
43 3zyi_A Leucine-rich repeat-con 99.8 7.1E-20 2.4E-24 140.1 16.2 160 2-162 119-307 (452)
44 4fmz_A Internalin; leucine ric 99.8 6.8E-20 2.3E-24 135.6 15.5 155 2-162 173-328 (347)
45 4g8a_A TOLL-like receptor 4; l 99.8 6.6E-20 2.2E-24 145.0 15.0 152 10-164 35-192 (635)
46 3vq2_A TLR4, TOLL-like recepto 99.8 3.1E-20 1.1E-24 146.6 12.9 158 3-161 396-561 (606)
47 3o6n_A APL1; leucine-rich repe 99.8 7.9E-20 2.7E-24 137.4 14.5 159 2-162 113-335 (390)
48 2z80_A TOLL-like receptor 2, v 99.8 1.9E-20 6.4E-25 139.1 10.8 158 6-164 52-217 (353)
49 2o6s_A Variable lymphocyte rec 99.8 3.9E-20 1.3E-24 127.8 11.6 155 5-166 27-186 (208)
50 3vq2_A TLR4, TOLL-like recepto 99.8 9.8E-20 3.3E-24 143.8 15.2 160 3-163 373-539 (606)
51 2z80_A TOLL-like receptor 2, v 99.8 6.8E-21 2.3E-25 141.4 8.0 83 2-84 72-159 (353)
52 1xku_A Decorin; proteoglycan, 99.8 1.2E-19 4.1E-24 133.5 14.5 128 6-135 52-184 (330)
53 4eco_A Uncharacterized protein 99.8 7.6E-21 2.6E-25 151.1 8.7 158 2-161 202-393 (636)
54 1wwl_A Monocyte differentiatio 99.8 5.5E-20 1.9E-24 134.5 12.5 156 3-160 118-289 (312)
55 4g8a_A TOLL-like receptor 4; l 99.8 7E-20 2.4E-24 144.8 13.6 160 7-166 53-222 (635)
56 4ecn_A Leucine-rich repeat pro 99.8 2.5E-20 8.6E-25 151.8 11.1 157 2-161 444-635 (876)
57 2id5_A Lingo-1, leucine rich r 99.8 7.5E-20 2.6E-24 140.8 13.0 159 6-165 32-196 (477)
58 3v47_A TOLL-like receptor 5B a 99.8 2.4E-19 8.3E-24 137.0 15.7 111 51-162 298-412 (455)
59 2z7x_B TOLL-like receptor 1, v 99.8 2.1E-19 7.2E-24 139.6 15.5 156 3-162 321-485 (520)
60 1ziw_A TOLL-like receptor 3; i 99.8 4.6E-19 1.6E-23 141.7 17.7 121 45-166 473-605 (680)
61 2xot_A Amphoterin-induced prot 99.8 1.1E-19 3.9E-24 135.3 13.2 155 6-161 39-205 (361)
62 2z63_A TOLL-like receptor 4, v 99.8 1E-19 3.6E-24 142.5 13.3 159 4-163 371-536 (570)
63 3v47_A TOLL-like receptor 5B a 99.8 1.3E-19 4.5E-24 138.5 13.4 115 52-167 275-393 (455)
64 3oja_B Anopheles plasmodium-re 99.8 1.8E-19 6.1E-24 142.3 14.5 160 2-163 119-342 (597)
65 3oja_A Leucine-rich immune mol 99.8 1.1E-19 3.7E-24 140.4 12.9 120 48-170 140-263 (487)
66 3t6q_A CD180 antigen; protein- 99.8 3.1E-19 1E-23 141.0 15.7 164 2-166 274-446 (606)
67 4fmz_A Internalin; leucine ric 99.8 1.2E-18 4E-23 129.0 17.6 158 4-168 153-310 (347)
68 1wwl_A Monocyte differentiatio 99.8 6.8E-20 2.3E-24 134.0 10.3 161 4-164 93-272 (312)
69 3cvr_A Invasion plasmid antige 99.8 3.5E-19 1.2E-23 139.4 14.9 147 5-167 99-252 (571)
70 4eco_A Uncharacterized protein 99.8 3E-19 1E-23 141.9 14.5 134 28-163 432-584 (636)
71 2z81_A CD282 antigen, TOLL-lik 99.8 9.8E-19 3.4E-23 136.6 16.8 151 5-162 360-514 (549)
72 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.1E-18 3.8E-23 136.8 16.7 156 3-162 350-514 (562)
73 4glp_A Monocyte differentiatio 99.8 8.6E-20 2.9E-24 133.3 9.7 155 3-160 114-287 (310)
74 1m9s_A Internalin B; cell inva 99.8 4E-19 1.4E-23 140.1 14.1 152 3-161 40-191 (605)
75 2id5_A Lingo-1, leucine rich r 99.8 6.3E-19 2.1E-23 135.6 14.5 133 2-135 52-189 (477)
76 2z63_A TOLL-like receptor 4, v 99.8 2.1E-19 7.2E-24 140.8 11.8 165 3-167 344-516 (570)
77 3e6j_A Variable lymphocyte rec 99.8 1.3E-18 4.4E-23 121.9 14.6 131 6-137 40-174 (229)
78 4ecn_A Leucine-rich repeat pro 99.8 5.4E-19 1.8E-23 144.1 14.1 87 4-91 546-636 (876)
79 1xeu_A Internalin C; cellular 99.8 1.5E-19 5E-24 129.2 9.1 146 6-160 19-165 (263)
80 2ell_A Acidic leucine-rich nuc 99.8 3.8E-19 1.3E-23 118.9 10.5 133 28-161 23-163 (168)
81 2z81_A CD282 antigen, TOLL-lik 99.8 8.2E-19 2.8E-23 137.0 14.0 156 4-167 332-495 (549)
82 2ft3_A Biglycan; proteoglycan, 99.8 8.1E-19 2.8E-23 129.2 13.2 161 6-167 54-239 (332)
83 1o6v_A Internalin A; bacterial 99.8 1.9E-18 6.6E-23 132.6 15.8 151 4-161 219-369 (466)
84 2ell_A Acidic leucine-rich nuc 99.8 5.9E-19 2E-23 117.9 11.1 135 4-140 22-165 (168)
85 3t6q_A CD180 antigen; protein- 99.8 2.9E-18 1E-22 135.4 16.7 65 96-162 475-540 (606)
86 4b8c_D Glucose-repressible alc 99.8 4.9E-19 1.7E-23 142.4 12.0 171 6-178 173-350 (727)
87 1ziw_A TOLL-like receptor 3; i 99.8 2.2E-18 7.5E-23 137.8 15.7 161 6-167 25-193 (680)
88 3o53_A Protein LRIM1, AGAP0063 99.8 8.1E-19 2.8E-23 128.5 12.1 158 2-163 54-232 (317)
89 1o6v_A Internalin A; bacterial 99.8 5.5E-18 1.9E-22 130.1 17.2 151 3-160 174-346 (466)
90 4glp_A Monocyte differentiatio 99.8 2.5E-19 8.6E-24 130.8 9.3 150 5-159 144-308 (310)
91 2v9t_B SLIT homolog 2 protein 99.8 2.2E-18 7.4E-23 120.1 13.5 129 6-135 32-165 (220)
92 3bz5_A Internalin-J, INLJ; leu 99.8 5.8E-18 2E-22 129.7 16.3 152 2-165 81-253 (457)
93 2z7x_B TOLL-like receptor 1, v 99.8 1.5E-18 5E-23 134.8 12.8 153 9-167 3-162 (520)
94 2je0_A Acidic leucine-rich nuc 99.8 1.7E-18 5.8E-23 113.4 10.4 126 28-154 16-149 (149)
95 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.3E-18 1.1E-22 134.2 13.1 157 5-167 30-193 (562)
96 3bz5_A Internalin-J, INLJ; leu 99.8 1.5E-17 5.3E-22 127.4 16.5 101 4-111 40-141 (457)
97 2v70_A SLIT-2, SLIT homolog 2 99.8 6.7E-18 2.3E-22 117.6 13.1 129 6-135 32-166 (220)
98 3oja_A Leucine-rich immune mol 99.8 1.7E-18 5.8E-23 133.7 11.1 157 4-163 32-209 (487)
99 3cvr_A Invasion plasmid antige 99.8 1.3E-17 4.4E-22 130.5 15.5 139 8-165 82-227 (571)
100 1w8a_A SLIT protein; signaling 99.8 1.1E-17 3.7E-22 114.2 13.3 125 33-160 12-141 (192)
101 4ezg_A Putative uncharacterize 99.8 3.7E-18 1.3E-22 116.9 10.3 133 26-161 41-175 (197)
102 1w8a_A SLIT protein; signaling 99.8 2.7E-18 9.2E-23 117.2 9.5 125 8-135 10-139 (192)
103 3g06_A SSPH2 (leucine-rich rep 99.8 2.4E-17 8.2E-22 130.3 16.3 86 74-167 221-306 (622)
104 1a9n_A U2A', U2A'; complex (nu 99.8 4.7E-18 1.6E-22 114.4 10.6 134 25-159 15-154 (176)
105 2wfh_A SLIT homolog 2 protein 99.8 1.7E-17 5.8E-22 113.3 13.4 124 9-135 13-139 (193)
106 2je0_A Acidic leucine-rich nuc 99.8 7.8E-18 2.7E-22 110.3 10.8 126 4-131 15-149 (149)
107 2wfh_A SLIT homolog 2 protein 99.8 2.9E-17 9.8E-22 112.2 13.5 127 32-161 13-142 (193)
108 1a9n_A U2A', U2A'; complex (nu 99.8 7.7E-18 2.6E-22 113.3 10.2 130 3-136 16-154 (176)
109 2o6r_A Variable lymphocyte rec 99.7 8.3E-17 2.8E-21 108.3 14.7 128 32-162 10-141 (177)
110 1dce_A Protein (RAB geranylger 99.7 6.9E-19 2.4E-23 137.9 3.3 157 3-163 346-551 (567)
111 3j0a_A TOLL-like receptor 5; m 99.7 3.4E-17 1.2E-21 133.9 13.3 131 6-136 24-162 (844)
112 3j0a_A TOLL-like receptor 5; m 99.7 4.8E-17 1.6E-21 133.0 14.1 165 2-167 44-226 (844)
113 1jl5_A Outer protein YOPM; leu 99.7 1.6E-16 5.5E-21 121.6 16.0 78 30-111 132-209 (454)
114 4b8c_D Glucose-repressible alc 99.7 1.3E-18 4.6E-23 139.9 4.5 143 18-162 213-358 (727)
115 1jl5_A Outer protein YOPM; leu 99.7 1.8E-16 6.1E-21 121.4 15.7 140 6-159 131-271 (454)
116 3goz_A Leucine-rich repeat-con 99.7 4.3E-18 1.5E-22 126.8 6.5 159 7-166 52-246 (362)
117 2ca6_A RAN GTPase-activating p 99.7 3.3E-18 1.1E-22 128.4 5.5 159 2-160 56-259 (386)
118 2ca6_A RAN GTPase-activating p 99.7 2.6E-18 8.7E-23 129.0 4.8 115 48-162 183-320 (386)
119 2ast_B S-phase kinase-associat 99.7 1.9E-17 6.4E-22 121.9 8.5 152 4-155 91-257 (336)
120 2ast_B S-phase kinase-associat 99.7 6.2E-18 2.1E-22 124.5 5.2 163 6-168 70-246 (336)
121 2o6r_A Variable lymphocyte rec 99.7 5.1E-16 1.7E-20 104.4 13.9 129 7-138 8-140 (177)
122 3g06_A SSPH2 (leucine-rich rep 99.7 6.6E-16 2.3E-20 122.1 15.1 95 7-112 62-156 (622)
123 1ds9_A Outer arm dynein; leuci 99.7 3.5E-19 1.2E-23 122.1 -3.5 150 8-161 25-188 (198)
124 4ay9_X Follicle-stimulating ho 99.7 1.5E-16 5.2E-21 118.0 9.7 160 6-167 30-224 (350)
125 1z7x_W Ribonuclease inhibitor; 99.7 6.6E-18 2.3E-22 129.2 2.1 162 4-166 225-419 (461)
126 1dce_A Protein (RAB geranylger 99.7 1.2E-15 4.2E-20 119.6 13.0 121 30-152 442-567 (567)
127 3sb4_A Hypothetical leucine ri 99.6 1.5E-15 5.1E-20 111.7 9.9 94 73-169 225-321 (329)
128 3goz_A Leucine-rich repeat-con 99.6 7.6E-16 2.6E-20 114.7 8.4 164 4-167 20-218 (362)
129 4ay9_X Follicle-stimulating ho 99.6 1.6E-15 5.4E-20 112.5 9.6 157 8-167 11-200 (350)
130 1z7x_W Ribonuclease inhibitor; 99.6 6.4E-17 2.2E-21 123.8 1.4 134 29-163 199-359 (461)
131 3g39_A Variable lymphocyte rec 99.6 1.6E-14 5.5E-19 96.6 12.2 103 31-136 11-116 (170)
132 2r9u_A Variable lymphocyte rec 99.6 1.9E-14 6.5E-19 96.6 12.2 105 32-139 15-122 (174)
133 3g39_A Variable lymphocyte rec 99.6 3.3E-14 1.1E-18 95.0 11.3 104 7-112 10-117 (170)
134 2r9u_A Variable lymphocyte rec 99.6 4.9E-14 1.7E-18 94.6 11.5 102 9-112 15-120 (174)
135 1ds9_A Outer arm dynein; leuci 99.6 5.1E-17 1.7E-21 111.3 -3.6 130 2-136 44-186 (198)
136 3un9_A NLR family member X1; l 99.5 7.4E-16 2.5E-20 115.1 1.6 164 5-168 71-262 (372)
137 3sb4_A Hypothetical leucine ri 99.5 8.2E-14 2.8E-18 102.4 11.7 99 51-152 225-328 (329)
138 4fdw_A Leucine rich hypothetic 99.4 2.8E-12 9.7E-17 96.6 11.9 161 1-167 175-367 (401)
139 2ifg_A High affinity nerve gro 99.4 4.4E-12 1.5E-16 93.7 11.2 100 33-135 12-116 (347)
140 2ifg_A High affinity nerve gro 99.4 3.2E-12 1.1E-16 94.4 10.0 102 9-111 11-117 (347)
141 3ogk_B Coronatine-insensitive 99.3 3.2E-13 1.1E-17 106.3 2.9 142 27-168 376-536 (592)
142 4fdw_A Leucine rich hypothetic 99.3 4.7E-11 1.6E-15 90.0 12.0 76 7-84 158-236 (401)
143 3un9_A NLR family member X1; l 99.2 2.3E-12 7.7E-17 96.3 2.7 140 28-167 71-233 (372)
144 3ogk_B Coronatine-insensitive 99.2 4.8E-12 1.6E-16 99.6 4.3 57 4-60 190-251 (592)
145 2ra8_A Uncharacterized protein 99.1 1.7E-11 5.8E-16 91.1 3.6 162 3-167 136-329 (362)
146 2p1m_B Transport inhibitor res 99.1 1.8E-11 6.1E-16 96.3 2.9 104 4-107 103-221 (594)
147 2p1m_B Transport inhibitor res 99.1 4.7E-11 1.6E-15 93.9 2.4 80 4-84 128-221 (594)
148 1io0_A Tropomodulin; LRR prote 99.0 1E-10 3.6E-15 79.0 3.1 113 23-135 30-164 (185)
149 1io0_A Tropomodulin; LRR prote 99.0 4.7E-10 1.6E-14 75.8 4.7 115 47-161 31-167 (185)
150 2ra8_A Uncharacterized protein 98.6 4.2E-08 1.4E-12 72.9 5.6 151 3-156 169-341 (362)
151 3rw6_A Nuclear RNA export fact 98.6 3E-08 1E-12 70.5 3.0 62 73-135 169-233 (267)
152 4h09_A Hypothetical leucine ri 98.5 1.5E-06 5.1E-11 64.8 12.0 135 28-168 216-355 (379)
153 4fs7_A Uncharacterized protein 98.5 1.7E-06 5.9E-11 64.9 10.9 143 5-155 229-376 (394)
154 4h09_A Hypothetical leucine ri 98.4 5.2E-06 1.8E-10 61.9 11.9 138 3-146 214-357 (379)
155 4gt6_A Cell surface protein; l 98.4 1.6E-05 5.6E-10 59.6 14.5 80 72-155 286-367 (394)
156 3rw6_A Nuclear RNA export fact 98.3 1.4E-07 4.8E-12 67.0 1.5 78 50-128 168-257 (267)
157 4gt6_A Cell surface protein; l 98.3 1.5E-05 5.2E-10 59.7 12.1 125 27-157 263-390 (394)
158 3e4g_A ATP synthase subunit S, 98.3 4.2E-07 1.4E-11 60.5 3.2 60 95-155 83-149 (176)
159 4fs7_A Uncharacterized protein 98.3 2.3E-05 7.9E-10 58.8 12.6 159 1-168 203-365 (394)
160 3e4g_A ATP synthase subunit S, 98.2 8.2E-07 2.8E-11 59.0 3.3 92 44-136 53-154 (176)
161 1pgv_A TMD-1, tropomodulin TMD 98.1 2.5E-06 8.5E-11 57.8 3.7 108 27-134 39-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 98.0 6.7E-06 2.3E-10 55.7 4.6 110 48-158 37-170 (197)
163 3rfe_A Platelet glycoprotein I 97.7 0.0001 3.4E-09 46.6 6.5 55 78-135 12-68 (130)
164 3rfe_A Platelet glycoprotein I 97.7 0.0001 3.6E-09 46.5 6.3 53 10-64 12-67 (130)
165 2lz0_A Uncharacterized protein 83.1 1.8 6.1E-05 25.5 3.9 37 93-131 16-52 (100)
No 1
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=1.7e-22 Score=145.98 Aligned_cols=165 Identities=22% Similarity=0.308 Sum_probs=116.3
Q ss_pred CCCCCCccEEecCCCcceec-ccccccCCCccEEEcCCCc-CCCC-CccccCCCCCceEEcCCCccccccCcc--ccCCC
Q psy3781 2 IAKEAQVEQADLSYNRLHVV-NSKLFDITSIRELDLSHNL-IQNL-PPDLLNLRHLVYMNLENNKLETIDIDF--NFGHL 76 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~l-~~~~~~~~~l~~l~l~~~~-l~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L 76 (183)
|..+++|+.|++++|.+..+ +..+..+++|+.|++++|. ++.+ +..+..+++|++|++++|.++.+++.. .+++|
T Consensus 52 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 131 (285)
T 1ozn_A 52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence 55677777777777777766 3445567777777777776 6665 445666777777777777777665443 67777
Q ss_pred CeEeCCCCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccC-ChhccccCcccEEeccC
Q psy3781 77 RELNLSSNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI-PYELGLAQQLHHLNLVG 154 (183)
Q Consensus 77 ~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~-~~~~~~~~~L~~l~l~~ 154 (183)
++|++++|.++.++. .+..+++|+.|++++|.++++. +..+..+++|+.|++++|.++++ |..+..+++|+.|++++
T Consensus 132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence 777777777776654 3556777777777777777764 44567777777777777777755 55577777777777777
Q ss_pred CcCCCCcHHHhhh
Q psy3781 155 NCFKYPRQDILQK 167 (183)
Q Consensus 155 n~~~~~~~~~~~~ 167 (183)
|.+++.+++.+..
T Consensus 211 n~l~~~~~~~~~~ 223 (285)
T 1ozn_A 211 NNLSALPTEALAP 223 (285)
T ss_dssp SCCSCCCHHHHTT
T ss_pred CcCCcCCHHHccc
Confidence 7777777665544
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=2.5e-23 Score=153.25 Aligned_cols=164 Identities=17% Similarity=0.263 Sum_probs=92.2
Q ss_pred CCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCC--------------------
Q psy3781 3 AKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENN-------------------- 62 (183)
Q Consensus 3 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n-------------------- 62 (183)
.++++|+.|++++|.+..+|..+..+++|++|++++|.++.+|..+..+++|++|++++|
T Consensus 101 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~ 180 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180 (328)
T ss_dssp GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence 345566666666666666666666666666666666666666655555555555555554
Q ss_pred -------------ccccccCcc-ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEe
Q psy3781 63 -------------KLETIDIDF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128 (183)
Q Consensus 63 -------------~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~ 128 (183)
.++.++..+ .+++|++|++++|.++.++..+..+++|+.|++++|.+.+.. +..++.+++|+.|+
T Consensus 181 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~-p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY-PPIFGGRAPLKRLI 259 (328)
T ss_dssp ESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBC-CCCTTCCCCCCEEE
T ss_pred cCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhh-HHHhcCCCCCCEEE
Confidence 443333333 444555555555555555444445555555555555544433 44555555566666
Q ss_pred CCCCCCc-cCChhccccCcccEEeccCCcCCCCcHHHhhh
Q psy3781 129 LSNNNIR-KIPYELGLAQQLHHLNLVGNCFKYPRQDILQK 167 (183)
Q Consensus 129 l~~n~l~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 167 (183)
+++|.+. .+|..+..+++|+.|++++|++.+..+..+.+
T Consensus 260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 6555433 45555666666666666666665555555444
No 3
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.9e-22 Score=146.18 Aligned_cols=158 Identities=26% Similarity=0.339 Sum_probs=119.4
Q ss_pred CCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc--ccCCCCeE
Q psy3781 2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLREL 79 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L 79 (183)
|..+++|+.|++++|.++.++.. ..+++|+.|++++|.++.+|..+..+++|++|++++|.++.+++.. .+++|++|
T Consensus 51 ~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L 129 (290)
T 1p9a_G 51 LMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129 (290)
T ss_dssp GTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred hhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEE
Confidence 45567777777777777766554 5677777888888877777777777788888888888888777654 77788888
Q ss_pred eCCCCCCCCcchh-ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCC
Q psy3781 80 NLSSNKFQQIPKC-IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFK 158 (183)
Q Consensus 80 ~l~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~ 158 (183)
++++|+++.++.. +..+++|+.|++++|.++.+. +..+..+++|+.|++++|.++.+|..+....+|+.+++++|++.
T Consensus 130 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred ECCCCCCCccChhhcccccCCCEEECCCCcCCccC-HHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 8888888877654 346778888888888888775 45567788888888888888888877777778888888888877
Q ss_pred CCc
Q psy3781 159 YPR 161 (183)
Q Consensus 159 ~~~ 161 (183)
...
T Consensus 209 C~c 211 (290)
T 1p9a_G 209 CNC 211 (290)
T ss_dssp CSG
T ss_pred CcC
Confidence 653
No 4
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=3.1e-22 Score=143.59 Aligned_cols=159 Identities=24% Similarity=0.394 Sum_probs=107.5
Q ss_pred CCCCCCccEEecCCCcceecccccc-cCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCC
Q psy3781 2 IAKEAQVEQADLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLR 77 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~l~~~~~-~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~ 77 (183)
|..+++|+.|++++|.+..++..++ .+++|++|++++|.++.++.. +..+++|++|++++|.++.++... .+++|+
T Consensus 57 ~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 136 (270)
T 2o6q_A 57 FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136 (270)
T ss_dssp SSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCC
Confidence 4556667777777776666666553 566777777777776665543 455667777777777777666543 666777
Q ss_pred eEeCCCCCCCCcchh-ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCC
Q psy3781 78 ELNLSSNKFQQIPKC-IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGN 155 (183)
Q Consensus 78 ~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n 155 (183)
+|++++|.++.++.. +..+++|+.|++++|.++.+. +..+..+++|+.|++++|.++.++.. +..+++|+.|++++|
T Consensus 137 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP-EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC-hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 777777777766553 455677777777777777764 45566677777777777777766654 566777777777777
Q ss_pred cCCCCc
Q psy3781 156 CFKYPR 161 (183)
Q Consensus 156 ~~~~~~ 161 (183)
++....
T Consensus 216 ~~~c~c 221 (270)
T 2o6q_A 216 PWDCTC 221 (270)
T ss_dssp CBCCSS
T ss_pred CeeCCC
Confidence 776654
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=6.7e-23 Score=150.93 Aligned_cols=158 Identities=19% Similarity=0.293 Sum_probs=117.7
Q ss_pred CCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCC
Q psy3781 5 EAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSS 83 (183)
Q Consensus 5 ~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~ 83 (183)
...++.|++++|.+..+|+.++++++|++|++++|.++.+|..+..+++|++|++++|.++.++..+ .+++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 4789999999999999999999999999999999999999999999999999999999999888776 777888888877
Q ss_pred CCCC-Ccchhcc---------CCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEecc
Q psy3781 84 NKFQ-QIPKCIF---------HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLV 153 (183)
Q Consensus 84 ~~~~-~~~~~~~---------~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~ 153 (183)
|++. .+|..+. .+++|+.|++++|.++.+ +..++.+++|+.|++++|.++.+|..+..+++|+.|+++
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL--PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC--CGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc--hHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence 5443 4444333 256666666666666644 455666666666666666666665555566666666666
Q ss_pred CCcCCCCcHHH
Q psy3781 154 GNCFKYPRQDI 164 (183)
Q Consensus 154 ~n~~~~~~~~~ 164 (183)
+|.+.+..+..
T Consensus 238 ~n~~~~~~p~~ 248 (328)
T 4fcg_A 238 GCTALRNYPPI 248 (328)
T ss_dssp TCTTCCBCCCC
T ss_pred CCcchhhhHHH
Confidence 65555544443
No 6
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=5.2e-22 Score=142.57 Aligned_cols=159 Identities=26% Similarity=0.342 Sum_probs=134.9
Q ss_pred CCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCCe
Q psy3781 2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLRE 78 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~ 78 (183)
+..+++|+.|++++|.+..++ .+..+++|++|++++|.++.+++. +..+++|++|++++|.++.+++.. .+++|++
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence 456888999999999888764 566889999999999999977665 677899999999999999887764 7889999
Q ss_pred EeCCCCCCCCcchh-ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCc
Q psy3781 79 LNLSSNKFQQIPKC-IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNC 156 (183)
Q Consensus 79 L~l~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~ 156 (183)
|++++|.++.++.. +..+++|+.|++++|.++++. +..++.+++|+.|++++|.++.++.. +..+++|+.|++++|+
T Consensus 138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCccCHHHhccCccCCEEECCCCCcCccC-HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 99999999988664 467899999999999999875 56678899999999999999987755 6889999999999999
Q ss_pred CCCCcH
Q psy3781 157 FKYPRQ 162 (183)
Q Consensus 157 ~~~~~~ 162 (183)
+.+..+
T Consensus 217 ~~~~~~ 222 (272)
T 3rfs_A 217 WDCTCP 222 (272)
T ss_dssp BCCCTT
T ss_pred ccccCc
Confidence 887755
No 7
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=9.6e-22 Score=139.61 Aligned_cols=156 Identities=27% Similarity=0.430 Sum_probs=135.4
Q ss_pred CCccEEecCCCcceecccc-cccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCCeEeC
Q psy3781 6 AQVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNL 81 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l 81 (183)
+.++.|++++|.+..+++. +..+++|+.|++++|.++.+++. +..+++|++|++++|.++.++... .+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 4689999999999977664 55789999999999999977654 778999999999999999888765 8899999999
Q ss_pred CCCCCCCcchh-ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh-hccccCcccEEeccCCcCCC
Q psy3781 82 SSNKFQQIPKC-IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY-ELGLAQQLHHLNLVGNCFKY 159 (183)
Q Consensus 82 ~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~L~~l~l~~n~~~~ 159 (183)
++|.++.++.. +..+++|+.|++++|.++++. +..++.+++|+.|++++|.++.++. .+..+++|+.|++++|++.+
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP-AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccC-HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 99999988765 467899999999999999885 5678899999999999999998876 57889999999999999988
Q ss_pred CcH
Q psy3781 160 PRQ 162 (183)
Q Consensus 160 ~~~ 162 (183)
...
T Consensus 194 ~~~ 196 (251)
T 3m19_A 194 SRC 196 (251)
T ss_dssp TST
T ss_pred Ccc
Confidence 743
No 8
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.1e-21 Score=140.79 Aligned_cols=161 Identities=27% Similarity=0.427 Sum_probs=140.3
Q ss_pred CCccEEecCCCcceecccc-cccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCCeEeC
Q psy3781 6 AQVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNL 81 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l 81 (183)
++++.|++++|.+..+++. +..+++|++|++++|.++.++.. |..+++|++|++++|.++.++... .+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 4689999999999988764 55899999999999999988776 467999999999999999888765 7899999999
Q ss_pred CCCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCcCCC
Q psy3781 82 SSNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKY 159 (183)
Q Consensus 82 ~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~~~ 159 (183)
++|.++.++. .+..+++|+.|++++|.++++. +..++.+++|+.|++++|.++.++.. +..+++|+.|++++|.+++
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP-KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccC-HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 9999998865 4567899999999999999885 56688899999999999999988765 7889999999999999999
Q ss_pred CcHHHhhh
Q psy3781 160 PRQDILQK 167 (183)
Q Consensus 160 ~~~~~~~~ 167 (183)
.++..+..
T Consensus 196 ~~~~~~~~ 203 (270)
T 2o6q_A 196 VPEGAFDS 203 (270)
T ss_dssp CCTTTTTT
T ss_pred CCHHHhcc
Confidence 88876654
No 9
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=7.9e-22 Score=142.90 Aligned_cols=159 Identities=25% Similarity=0.329 Sum_probs=116.9
Q ss_pred CCccEEecCCCcceeccc-ccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCC
Q psy3781 6 AQVEQADLSYNRLHVVNS-KLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSS 83 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l~~-~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~ 83 (183)
+.++.|++++|.+..+++ .+..+++|+.|++++|.++.++.. ..+++|++|++++|.++.++..+ .+++|++|++++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF 109 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCC
Confidence 356666666666665443 344667777777777777765543 55677778888888777777666 777888888888
Q ss_pred CCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCcCCCCc
Q psy3781 84 NKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYPR 161 (183)
Q Consensus 84 ~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~~~~~ 161 (183)
|+++.++. .+..+++|+.|++++|.++.+. +..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|.++..+
T Consensus 110 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip 188 (290)
T 1p9a_G 110 NRLTSLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188 (290)
T ss_dssp SCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CcCcccCHHHHcCCCCCCEEECCCCCCCccC-hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccC
Confidence 88887764 4666788888888888888775 56677788888888888888888765 567888888888888888777
Q ss_pred HHHhh
Q psy3781 162 QDILQ 166 (183)
Q Consensus 162 ~~~~~ 166 (183)
..++.
T Consensus 189 ~~~~~ 193 (290)
T 1p9a_G 189 KGFFG 193 (290)
T ss_dssp TTTTT
T ss_pred hhhcc
Confidence 66554
No 10
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=1.4e-21 Score=141.19 Aligned_cols=161 Identities=27% Similarity=0.401 Sum_probs=142.3
Q ss_pred CCCCCCCccEEecCCCc-ceec-ccccccCCCccEEEcCCCcCCCCC-ccccCCCCCceEEcCCCccccccCcc--ccCC
Q psy3781 1 MIAKEAQVEQADLSYNR-LHVV-NSKLFDITSIRELDLSHNLIQNLP-PDLLNLRHLVYMNLENNKLETIDIDF--NFGH 75 (183)
Q Consensus 1 ~l~~~~~l~~l~l~~~~-i~~l-~~~~~~~~~l~~l~l~~~~l~~l~-~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~ 75 (183)
+|..+++|+.|++++|. +..+ +..+..+++|+.|++++|.++.++ ..+..+++|++|++++|.++.++... .+++
T Consensus 75 ~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 154 (285)
T 1ozn_A 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154 (285)
T ss_dssp TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC
Confidence 36778999999999997 8887 445668999999999999999774 45778999999999999999888764 7899
Q ss_pred CCeEeCCCCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEecc
Q psy3781 76 LRELNLSSNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLV 153 (183)
Q Consensus 76 L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~ 153 (183)
|++|++++|.++.++. .+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|.+++++.. +..+++|+.++++
T Consensus 155 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH-PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred ccEEECCCCcccccCHHHhcCccccCEEECCCCcccccC-HhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence 9999999999998876 4677999999999999999987 78889999999999999999998865 8899999999999
Q ss_pred CCcCCCCcH
Q psy3781 154 GNCFKYPRQ 162 (183)
Q Consensus 154 ~n~~~~~~~ 162 (183)
+|++.....
T Consensus 234 ~N~~~c~~~ 242 (285)
T 1ozn_A 234 DNPWVCDCR 242 (285)
T ss_dssp SSCEECSGG
T ss_pred CCCccCCCC
Confidence 999987553
No 11
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=1.8e-21 Score=139.76 Aligned_cols=162 Identities=25% Similarity=0.395 Sum_probs=142.8
Q ss_pred CCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc--ccCCCCeEe
Q psy3781 3 AKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELN 80 (183)
Q Consensus 3 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~ 80 (183)
..+++|+.|++.++.+..++. +..+++|+.|++++|.++.++ .+..+++|++|++++|.++.+++.. .+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 346789999999999987654 678999999999999999864 6888999999999999999888765 889999999
Q ss_pred CCCCCCCCcchh-ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCcCC
Q psy3781 81 LSSNKFQQIPKC-IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFK 158 (183)
Q Consensus 81 l~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~~ 158 (183)
+++|+++.++.. +..+++|+.|++++|.++++. +..++.+++|+.|++++|.++.++.. +..+++|+.|++++|.+.
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP-KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccC-HHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 999999988664 567899999999999999886 66678999999999999999988765 688999999999999999
Q ss_pred CCcHHHhhh
Q psy3781 159 YPRQDILQK 167 (183)
Q Consensus 159 ~~~~~~~~~ 167 (183)
+.++..+..
T Consensus 195 ~~~~~~~~~ 203 (272)
T 3rfs_A 195 SVPDGVFDR 203 (272)
T ss_dssp CCCTTTTTT
T ss_pred ccCHHHHhC
Confidence 998876654
No 12
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=1.5e-21 Score=140.31 Aligned_cols=159 Identities=23% Similarity=0.314 Sum_probs=96.0
Q ss_pred CCCCCCccEEecCCCcceecccc-cccCCCccEEEcCCCcCCCCC-ccccCCCCCceEEcCCCccccccCc-c-ccCCCC
Q psy3781 2 IAKEAQVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNLIQNLP-PDLLNLRHLVYMNLENNKLETIDID-F-NFGHLR 77 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~l~~l~-~~~~~~~~L~~L~l~~n~l~~~~~~-~-~~~~L~ 77 (183)
|..+++|+.|++++|.+..+++. +..+++|+.|++++|.++.++ ..+..+++|++|++++|.+..++.. + .+++|+
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 127 (276)
T 2z62_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (276)
T ss_dssp TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCC
Confidence 44566666666666666655543 335666667777766666544 3355666677777766666665553 2 666777
Q ss_pred eEeCCCCCCCC--cchhccCCCCCcEEEcCCCccccccCchhhhcC---------------------------CCccEEe
Q psy3781 78 ELNLSSNKFQQ--IPKCIFHLDNLEILILNNNDIEEINQPEKLVKM---------------------------QKLTVLD 128 (183)
Q Consensus 78 ~L~l~~~~~~~--~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~---------------------------~~L~~l~ 128 (183)
+|++++|.++. ++..+..+++|+.|++++|.++++. +..+..+ .+|+.|+
T Consensus 128 ~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~ 206 (276)
T 2z62_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELA 206 (276)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEE
T ss_pred EEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC-HHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEE
Confidence 77777777664 4555666677777777777666543 2222221 2455566
Q ss_pred CCCCCCccCChh-ccccCcccEEeccCCcCCCCc
Q psy3781 129 LSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYPR 161 (183)
Q Consensus 129 l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~~~~~ 161 (183)
+++|.++.++.. +..+++|+.+++++|++.+..
T Consensus 207 L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred CCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 666666655544 455666666666666666544
No 13
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=8.4e-22 Score=143.60 Aligned_cols=152 Identities=23% Similarity=0.423 Sum_probs=61.7
Q ss_pred CccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCc--cccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCC
Q psy3781 7 QVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP--DLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLS 82 (183)
Q Consensus 7 ~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~--~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~ 82 (183)
+|+.|++++|.+..++..+..+++|+.|++++|.++.++. .+..+++|++|++++|.+....+.. .+++|++|+++
T Consensus 79 ~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 79 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp CCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred ccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence 3444444444444344333344444444444444443332 2333444444444444443322221 33344444444
Q ss_pred CCCCCC--cchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh-hccccCcccEEeccCCcCCC
Q psy3781 83 SNKFQQ--IPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY-ELGLAQQLHHLNLVGNCFKY 159 (183)
Q Consensus 83 ~~~~~~--~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~L~~l~l~~n~~~~ 159 (183)
+|.++. ++..+..+++|+.|++++|.+++.. +..+..+++|+.|++++|.+++++. .+..+++|+.|++++|.+.+
T Consensus 159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred CCccccccchhHHhhCcCCCEEECCCCCcCCcC-HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence 444332 2233333444444444444444433 3334444444444444444443332 23334444444444444433
No 14
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=4.9e-21 Score=135.97 Aligned_cols=159 Identities=23% Similarity=0.380 Sum_probs=141.0
Q ss_pred CCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCC
Q psy3781 6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLS 82 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~ 82 (183)
...+.++++++.+..+|..+. +.++.|++++|.++.+++ .+..+++|++|++++|.++.+++.. .+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 356889999999999998775 689999999999997765 4888999999999999999888764 88999999999
Q ss_pred CCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh-hccccCcccEEeccCCcCCCC
Q psy3781 83 SNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY-ELGLAQQLHHLNLVGNCFKYP 160 (183)
Q Consensus 83 ~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~L~~l~l~~n~~~~~ 160 (183)
+|.++.++. .+..+++|+.|++++|.++.+. +..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+++.
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP-SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcC-hhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 999998865 4567999999999999999886 5667889999999999999999887 588999999999999999999
Q ss_pred cHHHhhh
Q psy3781 161 RQDILQK 167 (183)
Q Consensus 161 ~~~~~~~ 167 (183)
++..+..
T Consensus 171 ~~~~~~~ 177 (251)
T 3m19_A 171 PHGAFDR 177 (251)
T ss_dssp CTTTTTT
T ss_pred CHHHHhC
Confidence 8876654
No 15
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=6.1e-21 Score=139.31 Aligned_cols=152 Identities=23% Similarity=0.335 Sum_probs=90.7
Q ss_pred CCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCC
Q psy3781 3 AKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLS 82 (183)
Q Consensus 3 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~ 82 (183)
..+++|+.|++++|.+..+++ +..+++|+.|++++|.++.++ .+..+++|++|++++|.++.++....+++|++|+++
T Consensus 60 ~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~ 137 (308)
T 1h6u_A 60 QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD 137 (308)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECC
T ss_pred hccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECC
Confidence 445666666666666666555 556666666666666666553 455566666666666666655442255666666666
Q ss_pred CCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCc
Q psy3781 83 SNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPR 161 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~ 161 (183)
+|.++.++. +..+++|+.|++++|.+++.. . +..+++|+.|++++|.+++++. +..+++|+.|++++|.+.+.+
T Consensus 138 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 138 LNQITNISP-LAGLTNLQYLSIGNAQVSDLT--P-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp SSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG
T ss_pred CCccCcCcc-ccCCCCccEEEccCCcCCCCh--h-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc
Confidence 666665543 445566666666666665542 2 5556666666666666665544 555566666666666665554
No 16
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.87 E-value=1.1e-21 Score=140.19 Aligned_cols=155 Identities=27% Similarity=0.374 Sum_probs=138.0
Q ss_pred CCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeC
Q psy3781 2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNL 81 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l 81 (183)
+..+++|+.|++++|.+..++ .+..+++|+.|++++|+++.+++ +..+++|++|++++|.++.++.... ++|++|++
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L 113 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFL 113 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEEC
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc-CcccEEEc
Confidence 346789999999999999887 67789999999999999998887 8899999999999999998876546 89999999
Q ss_pred CCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCc
Q psy3781 82 SSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPR 161 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~ 161 (183)
++|+++.++ .+..+++|+.|++++|.++++ + .++.+++|+.|++++|.++++ ..+..+++|+.|++++|++.+.+
T Consensus 114 ~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~--~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 114 DNNELRDTD-SLIHLKNLEILSIRNNKLKSI--V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CSSCCSBSG-GGTTCTTCCEEECTTSCCCBC--G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred cCCccCCCh-hhcCcccccEEECCCCcCCCC--h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCc
Confidence 999999885 477899999999999999987 3 688899999999999999988 66889999999999999988776
Q ss_pred HHH
Q psy3781 162 QDI 164 (183)
Q Consensus 162 ~~~ 164 (183)
...
T Consensus 189 ~~~ 191 (263)
T 1xeu_A 189 VKY 191 (263)
T ss_dssp EEC
T ss_pred ccc
Confidence 543
No 17
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=5.9e-22 Score=144.99 Aligned_cols=69 Identities=26% Similarity=0.172 Sum_probs=38.8
Q ss_pred ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc-cCChhccccCcccEEeccCCcCCCCcHH
Q psy3781 93 IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR-KIPYELGLAQQLHHLNLVGNCFKYPRQD 163 (183)
Q Consensus 93 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 163 (183)
+..+++|+.|++++|.+++. ...+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+++..+.
T Consensus 217 ~~~l~~L~~L~L~~N~l~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 217 FGSDKNTQKIHLAKNSLAFD--LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp CCTTSCCSEEECCSSEECCB--GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred HhcCCCCCEEECCCCceeee--cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 33445555555555555443 223445566666666666665 5555566666666666666666544443
No 18
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.87 E-value=3.5e-21 Score=139.58 Aligned_cols=153 Identities=27% Similarity=0.331 Sum_probs=98.1
Q ss_pred CCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCC
Q psy3781 3 AKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLS 82 (183)
Q Consensus 3 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~ 82 (183)
..+++|+.|++++|.+..+++ +..+++|+.|++++|.++.++. +..+++|++|++++|.++.++....+++|++|+++
T Consensus 65 ~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~ 142 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLG 142 (291)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECC
T ss_pred hcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCChhhcCCCCCCEEEcc
Confidence 445666666666666666555 5566666666666666665543 55666667777776666665322266667777777
Q ss_pred CCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcH
Q psy3781 83 SNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQ 162 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 162 (183)
+|.++.+ ..+..+++|+.|++++|.+++.. . +..+++|+.|++++|.+++++. +..+++|+.|++++|++...+.
T Consensus 143 ~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 143 NNKITDI-TVLSRLTKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp SSCCCCC-GGGGGCTTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCCE
T ss_pred CCcCCcc-hhhccCCCCCEEEccCCccccch--h-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCCcc
Confidence 7766665 34556667777777777776653 2 6666777777777777776654 6667777777777776655443
No 19
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.87 E-value=1.3e-20 Score=132.12 Aligned_cols=152 Identities=25% Similarity=0.358 Sum_probs=135.1
Q ss_pred CccEEecCCCcceecccccccCCCccEEEcCCCcCCCC-CccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCC
Q psy3781 7 QVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNL-PPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSS 83 (183)
Q Consensus 7 ~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~ 83 (183)
.-+.++++++.+..+|..+. ++++.|++++|.++.+ +..|..+++|++|++++|.+..++... .+++|++|++++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 45789999999999998774 8999999999999977 555888999999999999999988765 889999999999
Q ss_pred CCCCCcchh-ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCcCCCCc
Q psy3781 84 NKFQQIPKC-IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYPR 161 (183)
Q Consensus 84 ~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~~~~~ 161 (183)
|.++.++.. +..+++|+.|++++|.++.+ +..+..+++|+.|++++|.++.++.. +..+++|+.|++++|++.+..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l--p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTEL--PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSC--CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CcCCccChhHhCcchhhCeEeccCCccccc--CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 999988764 56799999999999999977 67889999999999999999988854 888999999999999999876
Q ss_pred H
Q psy3781 162 Q 162 (183)
Q Consensus 162 ~ 162 (183)
+
T Consensus 176 ~ 176 (229)
T 3e6j_A 176 R 176 (229)
T ss_dssp G
T ss_pred c
Confidence 4
No 20
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.87 E-value=7.1e-21 Score=132.66 Aligned_cols=152 Identities=24% Similarity=0.349 Sum_probs=134.4
Q ss_pred ccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCc--cccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCC
Q psy3781 8 VEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP--DLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSS 83 (183)
Q Consensus 8 l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~--~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~ 83 (183)
-+.++++++.++.+|..+. ..++.|++++|.++.+++ .|..+++|++|++++|.++.++... .+++|++|++++
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4689999999999988764 467899999999997743 3788999999999999999988754 889999999999
Q ss_pred CCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccC-ChhccccCcccEEeccCCcCCCCc
Q psy3781 84 NKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI-PYELGLAQQLHHLNLVGNCFKYPR 161 (183)
Q Consensus 84 ~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~-~~~~~~~~~L~~l~l~~n~~~~~~ 161 (183)
|.++.++. .+..+++|+.|++++|.++++. +..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|++.+..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVG-NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBC-TTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeEC-HhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 99998866 4667999999999999999987 78889999999999999999988 567899999999999999998765
Q ss_pred H
Q psy3781 162 Q 162 (183)
Q Consensus 162 ~ 162 (183)
.
T Consensus 170 ~ 170 (220)
T 2v70_A 170 Y 170 (220)
T ss_dssp G
T ss_pred c
Confidence 4
No 21
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.87 E-value=6.7e-21 Score=132.80 Aligned_cols=151 Identities=25% Similarity=0.407 Sum_probs=134.1
Q ss_pred ccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCccccccCc-c-ccCCCCeEeCCCC
Q psy3781 8 VEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDID-F-NFGHLRELNLSSN 84 (183)
Q Consensus 8 l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~-~-~~~~L~~L~l~~~ 84 (183)
-+.+++.++.++.+|..+. ++++.|++++|.++.++. .|..+++|++|++++|.++.+.+. + .+++|++|++++|
T Consensus 13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 3678999999999998764 689999999999998776 578899999999999999988554 4 8899999999999
Q ss_pred CCCCcchh-ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCcCCCCc
Q psy3781 85 KFQQIPKC-IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYPR 161 (183)
Q Consensus 85 ~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~~~~~ 161 (183)
.++.++.. +..+++|+.|++++|.++.+. +..+..+++|+.|++++|.++.++.. +..+++|+.+++++|++....
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLR-VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeC-HHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence 99999775 456999999999999999987 78899999999999999999988764 888999999999999998754
No 22
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.87 E-value=2e-21 Score=133.25 Aligned_cols=150 Identities=14% Similarity=0.172 Sum_probs=128.9
Q ss_pred CCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCcccc-ccCcc-ccCCCCeEeC
Q psy3781 4 KEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLET-IDIDF-NFGHLRELNL 81 (183)
Q Consensus 4 ~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~-~~~~~-~~~~L~~L~l 81 (183)
++++|+.|++++|.+..++ ++..+++|+.|++++|.++.++ .+..+++|++|++++|.++. .+..+ .+++|++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 4578999999999999888 6788999999999999887664 67889999999999999986 34445 8899999999
Q ss_pred CCCCCCC-cchhccCCCCCcEEEcCCCc-cccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCC
Q psy3781 82 SSNKFQQ-IPKCIFHLDNLEILILNNND-IEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKY 159 (183)
Q Consensus 82 ~~~~~~~-~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~ 159 (183)
++|.++. .+..+..+++|+.|++++|. ++++ + .+..+++|+.|++++|.+++++ .+..+++|+.|++++|++.+
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--M-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC--G-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcccc--H-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 9999995 46678889999999999998 7776 3 6888999999999999999987 68899999999999999865
No 23
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=4.2e-21 Score=146.47 Aligned_cols=163 Identities=24% Similarity=0.346 Sum_probs=104.4
Q ss_pred CCCCCCccEEecCCCcceecccc-cccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--------
Q psy3781 2 IAKEAQVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF-------- 71 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~-------- 71 (183)
|..+++|+.|++++|.+..+++. +..+++|+.|++++|+++.++.. |..+++|++|++++|.+..++...
T Consensus 84 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 163 (440)
T 3zyj_A 84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR 163 (440)
T ss_dssp TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccC
Confidence 55667777777777777766544 33567777777777777766553 556666777777666665444321
Q ss_pred -------------------ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCC
Q psy3781 72 -------------------NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNN 132 (183)
Q Consensus 72 -------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n 132 (183)
.+++|++|++++|+++.++. +..+++|+.|++++|.++++. +..+..+++|+.|++++|
T Consensus 164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIR-PGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp EEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTC
T ss_pred EeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccC-hhhhccCccCCEEECCCC
Confidence 34455555555555555542 445566667777777666665 566666777777777777
Q ss_pred CCccCC-hhccccCcccEEeccCCcCCCCcHHHhh
Q psy3781 133 NIRKIP-YELGLAQQLHHLNLVGNCFKYPRQDILQ 166 (183)
Q Consensus 133 ~l~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 166 (183)
.++.++ ..+..+++|+.|++++|.+++.+++.+.
T Consensus 242 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 276 (440)
T 3zyj_A 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276 (440)
T ss_dssp CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence 776553 3366677777777777777777666554
No 24
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=1.5e-21 Score=142.26 Aligned_cols=166 Identities=25% Similarity=0.333 Sum_probs=122.7
Q ss_pred CCCCCCccEEecCCCcceec---ccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccC--cc-ccCC
Q psy3781 2 IAKEAQVEQADLSYNRLHVV---NSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDI--DF-NFGH 75 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~l---~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~--~~-~~~~ 75 (183)
|.++++|+.|++++|.+..+ +..+..+++|+.|++++|.++.++..+..+++|++|++++|.++.++. .+ .+++
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 127 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT
T ss_pred hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccC
Confidence 45666677777777766633 344445667777777777777666677778888888888888877665 33 7788
Q ss_pred CCeEeCCCCCCCCc-chhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccC-ChhccccCcccEEecc
Q psy3781 76 LRELNLSSNKFQQI-PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI-PYELGLAQQLHHLNLV 153 (183)
Q Consensus 76 L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~-~~~~~~~~~L~~l~l~ 153 (183)
|++|++++|.++.. +..+..+++|+.|++++|.+.+...+..+..+++|+.|++++|.++++ +..+..+++|+.|+++
T Consensus 128 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207 (306)
T ss_dssp CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence 88888888887754 345666788888888888887622267788888999999999988876 5568888899999999
Q ss_pred CCcCCCCcHHHhhh
Q psy3781 154 GNCFKYPRQDILQK 167 (183)
Q Consensus 154 ~n~~~~~~~~~~~~ 167 (183)
+|.+.+.++..+..
T Consensus 208 ~N~l~~~~~~~~~~ 221 (306)
T 2z66_A 208 HNNFFSLDTFPYKC 221 (306)
T ss_dssp TSCCSBCCSGGGTT
T ss_pred CCccCccChhhccC
Confidence 99988877765543
No 25
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=7.7e-21 Score=145.47 Aligned_cols=162 Identities=24% Similarity=0.319 Sum_probs=93.7
Q ss_pred CCCCCCccEEecCCCcceecccc-cccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCc---------
Q psy3781 2 IAKEAQVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDID--------- 70 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~--------- 70 (183)
|..+++|+.|++++|.+..+++. +..+++|+.|++++|.++.++.. |..+++|++|++++|.+..++..
T Consensus 95 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 174 (452)
T 3zyi_A 95 FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM 174 (452)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCccc
Confidence 45566666666666666655433 33566666666666666655544 44566666666666655544431
Q ss_pred -----------------c-ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCC
Q psy3781 71 -----------------F-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNN 132 (183)
Q Consensus 71 -----------------~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n 132 (183)
+ .+++|++|++++|+++.++ .+..+++|+.|++++|.++++. +..+..+++|+.|++++|
T Consensus 175 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp EEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEEC-GGGGTTCTTCCEEECTTS
T ss_pred EEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccC-cccccCccCCCEEEeCCC
Confidence 1 3445555555555555443 2344556666666666666554 555666666666666666
Q ss_pred CCccCC-hhccccCcccEEeccCCcCCCCcHHHh
Q psy3781 133 NIRKIP-YELGLAQQLHHLNLVGNCFKYPRQDIL 165 (183)
Q Consensus 133 ~l~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~ 165 (183)
.++.++ ..+..+++|+.|++++|.+++.+++.+
T Consensus 253 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 286 (452)
T 3zyi_A 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF 286 (452)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred cCceECHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence 666443 335566666666666666666665544
No 26
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=1.7e-20 Score=138.03 Aligned_cols=164 Identities=23% Similarity=0.308 Sum_probs=109.8
Q ss_pred CCCCCCccEEecCCCcceec-ccccccCCCccEEEcCCCcCCCCCc---------------------c-ccCCCCCceEE
Q psy3781 2 IAKEAQVEQADLSYNRLHVV-NSKLFDITSIRELDLSHNLIQNLPP---------------------D-LLNLRHLVYMN 58 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~l-~~~~~~~~~l~~l~l~~~~l~~l~~---------------------~-~~~~~~L~~L~ 58 (183)
|..+++|+.|++++|.+..+ +..+..+++|+.|++++|.++.+|. . +..+++|++|+
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 151 (330)
T 1xku_A 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 151 (330)
T ss_dssp TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEE
Confidence 34455566666666555544 3334455555555555554443321 1 33455555566
Q ss_pred cCCCccc--------------------------cccCccccCCCCeEeCCCCCCCCc-chhccCCCCCcEEEcCCCcccc
Q psy3781 59 LENNKLE--------------------------TIDIDFNFGHLRELNLSSNKFQQI-PKCIFHLDNLEILILNNNDIEE 111 (183)
Q Consensus 59 l~~n~l~--------------------------~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~ 111 (183)
+++|.+. .++... .++|++|++++|.++.+ +..+..+++|+.|++++|.+++
T Consensus 152 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp CCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc-cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence 5555553 332222 14566666666666655 3456678889999999998888
Q ss_pred ccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcHHHhhh
Q psy3781 112 INQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQK 167 (183)
Q Consensus 112 ~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 167 (183)
.. +..+..+++|+.|++++|.++.+|..+..+++|+.|++++|++++.+...|..
T Consensus 231 ~~-~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~ 285 (330)
T 1xku_A 231 VD-NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285 (330)
T ss_dssp EC-TTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred eC-hhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence 75 56788889999999999999999988899999999999999999988877643
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=1.1e-20 Score=139.17 Aligned_cols=165 Identities=23% Similarity=0.326 Sum_probs=107.3
Q ss_pred CCCCCCccEEecCCCcceec-ccccccCCCccEEEcCCCcCCCCCcc----------------------ccCCCCCceEE
Q psy3781 2 IAKEAQVEQADLSYNRLHVV-NSKLFDITSIRELDLSHNLIQNLPPD----------------------LLNLRHLVYMN 58 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~l-~~~~~~~~~l~~l~l~~~~l~~l~~~----------------------~~~~~~L~~L~ 58 (183)
|..+++|+.|++++|.+..+ +..+..+++|+.|++++|.++.+|.. +..+++|++|+
T Consensus 74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 153 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIE 153 (332)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEE
T ss_pred hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEE
Confidence 44555666666666666654 33344555566666555555544432 44455566666
Q ss_pred cCCCcccc--ccCc-c-cc--------------------CCCCeEeCCCCCCCCcc-hhccCCCCCcEEEcCCCcccccc
Q psy3781 59 LENNKLET--IDID-F-NF--------------------GHLRELNLSSNKFQQIP-KCIFHLDNLEILILNNNDIEEIN 113 (183)
Q Consensus 59 l~~n~l~~--~~~~-~-~~--------------------~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~ 113 (183)
+++|.++. ..+. + .+ ++|++|++++|.++.++ ..+..+++|+.|++++|.+++..
T Consensus 154 l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 233 (332)
T 2ft3_A 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE 233 (332)
T ss_dssp CCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred CCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence 66555532 1111 1 11 24445555555555443 34556778888888888888775
Q ss_pred CchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcHHHhhh
Q psy3781 114 QPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQK 167 (183)
Q Consensus 114 ~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 167 (183)
+..+..+++|+.|++++|.++.+|..+..+++|+.|++++|++++.+...+..
T Consensus 234 -~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 234 -NGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp -TTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred -hhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence 56788889999999999999999988889999999999999999888776654
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=2.8e-21 Score=141.45 Aligned_cols=165 Identities=22% Similarity=0.318 Sum_probs=143.8
Q ss_pred CCCCCCccEEecCCCcce-ecccccccCCCccEEEcCCCcCC-CCCccccCCCCCceEEcCCCccc-cccCcc-ccC-CC
Q psy3781 2 IAKEAQVEQADLSYNRLH-VVNSKLFDITSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLENNKLE-TIDIDF-NFG-HL 76 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~-~l~~~~~~~~~l~~l~l~~~~l~-~l~~~~~~~~~L~~L~l~~n~l~-~~~~~~-~~~-~L 76 (183)
|.++++|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .++..+ .+. .|
T Consensus 97 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L 176 (313)
T 1ogq_A 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176 (313)
T ss_dssp GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC
T ss_pred HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC
Confidence 567899999999999998 77888889999999999999998 78888999999999999999998 666666 666 89
Q ss_pred CeEeCCCCCCC-CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCC
Q psy3781 77 RELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155 (183)
Q Consensus 77 ~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n 155 (183)
++|++++|.++ .++..+..+. |+.|++++|.+++.. +..+..+++|+.|++++|.++..+..+..+++|++|++++|
T Consensus 177 ~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN 254 (313)
T ss_dssp CEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECC-GGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSS
T ss_pred cEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcC-CHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCC
Confidence 99999999998 5566777666 999999999998876 78888999999999999999966666888999999999999
Q ss_pred cCCCCcHHHhhhC
Q psy3781 156 CFKYPRQDILQKG 168 (183)
Q Consensus 156 ~~~~~~~~~~~~~ 168 (183)
.+.+..+..+.+.
T Consensus 255 ~l~~~~p~~l~~l 267 (313)
T 1ogq_A 255 RIYGTLPQGLTQL 267 (313)
T ss_dssp CCEECCCGGGGGC
T ss_pred cccCcCChHHhcC
Confidence 9997777766554
No 29
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1e-20 Score=138.12 Aligned_cols=152 Identities=20% Similarity=0.311 Sum_probs=137.3
Q ss_pred CCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCC
Q psy3781 4 KEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSS 83 (183)
Q Consensus 4 ~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~ 83 (183)
.+++|+.|++.++.+..++ .+..+++|+.|++++|.++.+++ +..+++|++|++++|.++.++....+++|++|++++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTS 116 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTT
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCC
Confidence 4678999999999999886 57789999999999999998887 889999999999999999886433899999999999
Q ss_pred CCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcH
Q psy3781 84 NKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQ 162 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 162 (183)
|.++.++. +..+++|+.|++++|.+++.. . ++.+++|+.|++++|.+++++. +..+++|+.|++++|.+++.++
T Consensus 117 n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 117 TQITDVTP-LAGLSNLQVLYLDLNQITNIS--P-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP 190 (308)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCSSCCCCCG--G-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred CCCCCchh-hcCCCCCCEEECCCCccCcCc--c-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh
Confidence 99998865 778999999999999999874 3 8889999999999999999877 8899999999999999998875
No 30
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=1.2e-20 Score=135.66 Aligned_cols=160 Identities=28% Similarity=0.393 Sum_probs=131.5
Q ss_pred CccEEecCCCcceeccc-ccccCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCC
Q psy3781 7 QVEQADLSYNRLHVVNS-KLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLS 82 (183)
Q Consensus 7 ~l~~l~l~~~~i~~l~~-~~~~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~ 82 (183)
+++.|++++|.+..+++ .+.++++|+.|++++|.++.++. .+..+++|++|++++|.++.++... .+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 69999999999998877 56689999999999999997765 5788999999999999999887654 88999999999
Q ss_pred CCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh-hcccc----------------
Q psy3781 83 SNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY-ELGLA---------------- 144 (183)
Q Consensus 83 ~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~---------------- 144 (183)
+|.++.++. .+..+++|+.|++++|.+++...+..++.+++|+.|++++|.+++++. .+..+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 999998765 577899999999999999885447889999999999999999886543 22222
Q ss_pred -----------CcccEEeccCCcCCCCcHHHhh
Q psy3781 145 -----------QQLHHLNLVGNCFKYPRQDILQ 166 (183)
Q Consensus 145 -----------~~L~~l~l~~n~~~~~~~~~~~ 166 (183)
.+|+.|++++|.+++.++..+.
T Consensus 189 l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 221 (276)
T 2z62_A 189 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFD 221 (276)
T ss_dssp CCEECTTSSCSCCEEEEECCSSCCSCCCTTTTT
T ss_pred ccccCccccCCCcccEEECCCCceeecCHhHhc
Confidence 2566777777777777666554
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=3.9e-20 Score=139.03 Aligned_cols=161 Identities=24% Similarity=0.329 Sum_probs=85.0
Q ss_pred CCCCCCccEEecCCCcceecccc-cccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCC
Q psy3781 2 IAKEAQVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLR 77 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~ 77 (183)
|..+++|+.|++++|.+..+++. +..+++|+.|++++|.++.++.. |..+++|++|++++|.+..+++.. .+++|+
T Consensus 89 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 168 (390)
T 3o6n_A 89 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168 (390)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence 34455555555555555544433 23455555555555555555444 244555555555555555444332 444555
Q ss_pred eEeCCCCCCCCcc------------------------------------------------------------hhccCCC
Q psy3781 78 ELNLSSNKFQQIP------------------------------------------------------------KCIFHLD 97 (183)
Q Consensus 78 ~L~l~~~~~~~~~------------------------------------------------------------~~~~~~~ 97 (183)
+|++++|.++.++ ..+..++
T Consensus 169 ~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~ 248 (390)
T 3o6n_A 169 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYP 248 (390)
T ss_dssp EEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCT
T ss_pred EEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCC
Confidence 5555544443211 1122345
Q ss_pred CCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcHH
Q psy3781 98 NLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQD 163 (183)
Q Consensus 98 ~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 163 (183)
+|+.|++++|.+++.. +..+..+++|+.|++++|.++.++..+..+++|+.|++++|.+.+.+..
T Consensus 249 ~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 313 (390)
T 3o6n_A 249 GLVEVDLSYNELEKIM-YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERN 313 (390)
T ss_dssp TCSEEECCSSCCCEEE-SGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGG
T ss_pred CccEEECCCCcCCCcC-hhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCcc
Confidence 5555556666555554 4555666666666666666666555555566666666666666655443
No 32
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=1.2e-20 Score=152.85 Aligned_cols=89 Identities=31% Similarity=0.458 Sum_probs=56.3
Q ss_pred CCCCeEeCCCCCCC-CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc-cCChhccccCcccEEe
Q psy3781 74 GHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR-KIPYELGLAQQLHHLN 151 (183)
Q Consensus 74 ~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~-~~~~~~~~~~~L~~l~ 151 (183)
++++.|++++|+++ .+|..++.++.|+.|++++|.+++.. |..++.++.|+.|++++|.++ .+|..+..+++|++|+
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI-PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC-ChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 34556666666665 44555666666666666666666544 666666666666666666666 5566666666666666
Q ss_pred ccCCcCCCCcHH
Q psy3781 152 LVGNCFKYPRQD 163 (183)
Q Consensus 152 l~~n~~~~~~~~ 163 (183)
+++|+++|..|.
T Consensus 711 ls~N~l~g~iP~ 722 (768)
T 3rgz_A 711 LSNNNLSGPIPE 722 (768)
T ss_dssp CCSSEEEEECCS
T ss_pred CcCCcccccCCC
Confidence 666666655543
No 33
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=2.1e-20 Score=151.31 Aligned_cols=165 Identities=25% Similarity=0.335 Sum_probs=117.0
Q ss_pred CCCCCccEEecCCCcce-ecccccccCCCccEEEcCCCcCC-CCCccccCCCCCceEEcCCCccc-cccCcc-ccCCCCe
Q psy3781 3 AKEAQVEQADLSYNRLH-VVNSKLFDITSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLENNKLE-TIDIDF-NFGHLRE 78 (183)
Q Consensus 3 ~~~~~l~~l~l~~~~i~-~l~~~~~~~~~l~~l~l~~~~l~-~l~~~~~~~~~L~~L~l~~n~l~-~~~~~~-~~~~L~~ 78 (183)
..+++|+.|++++|.+. .+|..+..+++|+.|++++|+++ .+|..+..+++|++|++++|.+. .++..+ .+++|++
T Consensus 463 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 542 (768)
T 3rgz_A 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE
T ss_pred cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCE
Confidence 34556666666666666 45555556667777777777666 55666666777777777777766 444444 6677777
Q ss_pred EeCCCCCCC-Ccchhc----------------------------------------------------------------
Q psy3781 79 LNLSSNKFQ-QIPKCI---------------------------------------------------------------- 93 (183)
Q Consensus 79 L~l~~~~~~-~~~~~~---------------------------------------------------------------- 93 (183)
|++++|.++ .+|..+
T Consensus 543 L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g 622 (768)
T 3rgz_A 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622 (768)
T ss_dssp EECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred EECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence 777777655 333222
Q ss_pred ------cCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc-cCChhccccCcccEEeccCCcCCCCcHHHhh
Q psy3781 94 ------FHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR-KIPYELGLAQQLHHLNLVGNCFKYPRQDILQ 166 (183)
Q Consensus 94 ------~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 166 (183)
..+++|+.+++++|.+++.. |..++.++.|+.|++++|.++ .+|..++.+++|+.|++++|.+++..+..+.
T Consensus 623 ~~~~~~~~l~~L~~LdLs~N~l~g~i-p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 623 HTSPTFDNNGSMMFLDMSYNMLSGYI-PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp ECCCSCSSSBCCCEEECCSSCCBSCC-CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred cCchhhhccccccEEECcCCcccccC-CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence 12356777888888887665 788888888999999999888 7888888889999999999999888887766
Q ss_pred hC
Q psy3781 167 KG 168 (183)
Q Consensus 167 ~~ 168 (183)
+-
T Consensus 702 ~l 703 (768)
T 3rgz_A 702 AL 703 (768)
T ss_dssp GC
T ss_pred CC
Confidence 53
No 34
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=4.7e-21 Score=135.09 Aligned_cols=161 Identities=16% Similarity=0.212 Sum_probs=94.2
Q ss_pred CCCCCCccEEecCCCc-ceecccc-cccCCCccEEEcCC-CcCCCCCc-cccCCCCCceEEcCCCccccccCccccCCCC
Q psy3781 2 IAKEAQVEQADLSYNR-LHVVNSK-LFDITSIRELDLSH-NLIQNLPP-DLLNLRHLVYMNLENNKLETIDIDFNFGHLR 77 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~-i~~l~~~-~~~~~~l~~l~l~~-~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~ 77 (183)
|..+++|+.|++++|. ++.+++. +..+++|+.|++++ |.++.++. .|..+++|++|++++|.++.++....+.+|+
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~ 130 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTD 130 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCC
T ss_pred ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccc
Confidence 3455566666666664 5555543 33556666666665 56655543 3455666666666666666555411444554
Q ss_pred ---eEeCCCC-CCCCcch-hccCCCCCc-EEEcCCCccccccCchhhhcCCCccEEeCCCCC-CccCCh-hcccc-Cccc
Q psy3781 78 ---ELNLSSN-KFQQIPK-CIFHLDNLE-ILILNNNDIEEINQPEKLVKMQKLTVLDLSNNN-IRKIPY-ELGLA-QQLH 148 (183)
Q Consensus 78 ---~L~l~~~-~~~~~~~-~~~~~~~L~-~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~-l~~~~~-~~~~~-~~L~ 148 (183)
+|++++| .++.++. .+..+++|+ .+++++|.++.+. ...+.. ++|+.+++++|. ++.++. .+..+ ++|+
T Consensus 131 ~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~-~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~ 208 (239)
T 2xwt_C 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ-GYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208 (239)
T ss_dssp SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC-TTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCS
T ss_pred cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC-HhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCc
Confidence 6666666 6665544 344566666 7777777666553 333333 667777777773 666643 35666 6777
Q ss_pred EEeccCCcCCCCcHHH
Q psy3781 149 HLNLVGNCFKYPRQDI 164 (183)
Q Consensus 149 ~l~l~~n~~~~~~~~~ 164 (183)
.|++++|.+++.+...
T Consensus 209 ~L~l~~N~l~~l~~~~ 224 (239)
T 2xwt_C 209 LLDVSQTSVTALPSKG 224 (239)
T ss_dssp EEECTTCCCCCCCCTT
T ss_pred EEECCCCccccCChhH
Confidence 7777777776666553
No 35
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=3e-21 Score=136.10 Aligned_cols=161 Identities=19% Similarity=0.244 Sum_probs=140.7
Q ss_pred CCccEEecCCCcceecccc-cccCCCccEEEcCCCc-CCCCCc-cccCCCCCceEEcCC-CccccccCcc--ccCCCCeE
Q psy3781 6 AQVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNL-IQNLPP-DLLNLRHLVYMNLEN-NKLETIDIDF--NFGHLREL 79 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~-l~~l~~-~~~~~~~L~~L~l~~-n~l~~~~~~~--~~~~L~~L 79 (183)
.+++.|++++|.++.+++. +..+++|+.|++++|. ++.+++ .|..+++|++|++++ |.++.++... .+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 3799999999999998885 4589999999999997 998876 588899999999998 9999988765 88999999
Q ss_pred eCCCCCCCCcchhccCCCCCc---EEEcCCC-ccccccCchhhhcCCCcc-EEeCCCCCCccCChhccccCcccEEeccC
Q psy3781 80 NLSSNKFQQIPKCIFHLDNLE---ILILNNN-DIEEINQPEKLVKMQKLT-VLDLSNNNIRKIPYELGLAQQLHHLNLVG 154 (183)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~L~---~l~l~~n-~~~~~~~~~~~~~~~~L~-~l~l~~n~l~~~~~~~~~~~~L~~l~l~~ 154 (183)
++++|.++.+|. +..+++|+ .+++++| .++.+. +..+..+++|+ .+++++|.++.+|......++|+.|++++
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~-~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIP-VNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEEC-TTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTT
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcC-cccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCC
Confidence 999999999876 66778888 9999999 999886 66788999999 99999999999987654458999999999
Q ss_pred Cc-CCCCcHHHhhhC
Q psy3781 155 NC-FKYPRQDILQKG 168 (183)
Q Consensus 155 n~-~~~~~~~~~~~~ 168 (183)
|+ +++.++..+...
T Consensus 189 n~~l~~i~~~~~~~l 203 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGV 203 (239)
T ss_dssp CTTCCEECTTTTTTC
T ss_pred CCCcccCCHHHhhcc
Confidence 95 998887777654
No 36
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=3e-20 Score=138.45 Aligned_cols=157 Identities=32% Similarity=0.350 Sum_probs=107.1
Q ss_pred cEEecCCCcceecccccccCCCccEEEcCCCcCCCCCcc-cc-CCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCC
Q psy3781 9 EQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD-LL-NLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSN 84 (183)
Q Consensus 9 ~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~-~~-~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~ 84 (183)
+.++++++.+..+|..+. ..++.|++++|.++.++.. +. .+++|++|++++|.++.+++.. .+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 567777777777776553 3567777777777766554 33 6777777777777777766543 6677777777777
Q ss_pred CCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhc----cccCcccEEeccCCcCCC
Q psy3781 85 KFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYEL----GLAQQLHHLNLVGNCFKY 159 (183)
Q Consensus 85 ~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~----~~~~~L~~l~l~~n~~~~ 159 (183)
+++.++. .+..+++|+.|++++|.+..+. +..+..+++|+.|++++|.++.+|..+ ..+++|+.|++++|.++.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVD-RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEEC-HHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 7776654 3455777777777777777665 566777777777777777777776653 456777777777777777
Q ss_pred CcHHHhhhC
Q psy3781 160 PRQDILQKG 168 (183)
Q Consensus 160 ~~~~~~~~~ 168 (183)
.+...+...
T Consensus 178 l~~~~~~~l 186 (361)
T 2xot_A 178 LPLTDLQKL 186 (361)
T ss_dssp CCHHHHHHS
T ss_pred cCHHHhhhc
Confidence 776655443
No 37
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=2.7e-20 Score=134.87 Aligned_cols=153 Identities=27% Similarity=0.399 Sum_probs=136.6
Q ss_pred CCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCC
Q psy3781 3 AKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLS 82 (183)
Q Consensus 3 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~ 82 (183)
.++++|+.|++++|.+..++. +..+++|+.|++++|.++.+++ +..+++|++|++++|.++.++....+++|++|+++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 120 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECT
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECC
Confidence 346789999999999998854 6789999999999999998877 88899999999999999987764488999999999
Q ss_pred CCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcH
Q psy3781 83 SNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQ 162 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 162 (183)
+|.++.+ +.+..+++|+.|++++|.++++ ..+..+++|+.|++++|.+++++. +..+++|+.|++++|.+++.+.
T Consensus 121 ~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~ 195 (291)
T 1h6t_A 121 HNGISDI-NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA 195 (291)
T ss_dssp TSCCCCC-GGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG
T ss_pred CCcCCCC-hhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh
Confidence 9999987 4577889999999999999886 568889999999999999998877 8999999999999999988753
No 38
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=1e-19 Score=125.67 Aligned_cols=152 Identities=24% Similarity=0.314 Sum_probs=127.6
Q ss_pred ccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCC
Q psy3781 8 VEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSN 84 (183)
Q Consensus 8 l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~ 84 (183)
-+.+++.++.+..+|..+ .++++.|++++|+++.++.. +..+++|++|++++|.++.++... .+++|++|++++|
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 357788888888888766 45899999999999977765 667899999999999999887765 7889999999999
Q ss_pred CCCCcchh-ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCcCCCCcH
Q psy3781 85 KFQQIPKC-IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYPRQ 162 (183)
Q Consensus 85 ~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~~~~~~ 162 (183)
.++.++.. +..+++|+.|++++|.++++. +..+..+++|+.|++++|.+++++.. +..+++|+.+++++|++.+..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccC-HhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 99988664 567889999999999998875 56678899999999999999988765 7888999999999998887654
No 39
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=4.7e-20 Score=140.67 Aligned_cols=159 Identities=25% Similarity=0.358 Sum_probs=126.0
Q ss_pred CCCCCCccEEecCCCcceecccc-cccCCCccEEEcCCCcCCCCC-------------------------c-cccCCCCC
Q psy3781 2 IAKEAQVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNLIQNLP-------------------------P-DLLNLRHL 54 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~l~~l~-------------------------~-~~~~~~~L 54 (183)
|..+++|+.|++++|.+..+++. +..+++|+.|++++|.++.++ . .|..+++|
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 187 (440)
T 3zyj_A 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187 (440)
T ss_dssp GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC
T ss_pred ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc
Confidence 44566666666666666665554 335666666666666554332 2 35567889
Q ss_pred ceEEcCCCccccccCccccCCCCeEeCCCCCCCCc-chhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCC
Q psy3781 55 VYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQI-PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNN 133 (183)
Q Consensus 55 ~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~ 133 (183)
++|++++|.++.++....+++|++|++++|.++.+ +..+..+++|+.|++++|.++++. +..+..+++|+.|++++|.
T Consensus 188 ~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 188 RYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE-RNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp CEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTSSTTCTTCCEEECTTSC
T ss_pred CeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC-hhhhcCCCCCCEEECCCCC
Confidence 99999999998887544889999999999999987 456778999999999999999987 7888999999999999999
Q ss_pred CccCChh-ccccCcccEEeccCCcCCCCc
Q psy3781 134 IRKIPYE-LGLAQQLHHLNLVGNCFKYPR 161 (183)
Q Consensus 134 l~~~~~~-~~~~~~L~~l~l~~n~~~~~~ 161 (183)
++.++.. +..+++|+.|++++|++...-
T Consensus 267 l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 267 LTLLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp CCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred CCccChhHhccccCCCEEEcCCCCccCCC
Confidence 9988765 688999999999999987654
No 40
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.85 E-value=2.9e-20 Score=146.58 Aligned_cols=155 Identities=28% Similarity=0.347 Sum_probs=124.6
Q ss_pred CCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeC
Q psy3781 2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNL 81 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l 81 (183)
|..+++|+.|++++|.+..+++ +..+++|+.|++++|.++.++ .+..+++|+.|++++|.+..++....+++|+.|++
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L 138 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYL 138 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEEC
T ss_pred HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCccccCCCccCEEEC
Confidence 4567888888888888887776 667888888888888888765 57778888888888888887654337888888888
Q ss_pred CCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCc
Q psy3781 82 SSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPR 161 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~ 161 (183)
++|.++.+ ..+..+++|+.|++++|.+.+.. . +..+++|+.|++++|.+++++ .+..+++|+.|++++|++.+.+
T Consensus 139 s~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 139 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CSSCCCCC-GGGGSCTTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred CCCccCCc-hhhcccCCCCEEECcCCcCCCch--h-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence 88888877 55677888899999988888874 3 778888999999999888874 4788888999999988887765
Q ss_pred HH
Q psy3781 162 QD 163 (183)
Q Consensus 162 ~~ 163 (183)
..
T Consensus 214 ~~ 215 (605)
T 1m9s_A 214 IN 215 (605)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=6.1e-20 Score=144.95 Aligned_cols=161 Identities=24% Similarity=0.329 Sum_probs=85.9
Q ss_pred CCCCCCccEEecCCCcceeccccc-ccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCC
Q psy3781 2 IAKEAQVEQADLSYNRLHVVNSKL-FDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLR 77 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~l~~~~-~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~ 77 (183)
|..+++|+.|++++|.+..+++.. ..+++|+.|++++|.++.+|+. |..+++|++|++++|.+..+++.. .+++|+
T Consensus 95 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 174 (597)
T 3oja_B 95 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174 (597)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred hcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCc
Confidence 344555555555555555444433 3455555555555555555444 344555555555555555444432 444555
Q ss_pred eEeCCCCCCCCcc------------------------------------------------------------hhccCCC
Q psy3781 78 ELNLSSNKFQQIP------------------------------------------------------------KCIFHLD 97 (183)
Q Consensus 78 ~L~l~~~~~~~~~------------------------------------------------------------~~~~~~~ 97 (183)
+|++++|.++.++ ..+..++
T Consensus 175 ~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~ 254 (597)
T 3oja_B 175 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYP 254 (597)
T ss_dssp EEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCT
T ss_pred EEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCC
Confidence 5555555443221 1123345
Q ss_pred CCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcHH
Q psy3781 98 NLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQD 163 (183)
Q Consensus 98 ~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 163 (183)
+|+.|++++|.+.+.. +..++.+++|+.|++++|.++.+|..+..+++|+.|++++|.+.+.+..
T Consensus 255 ~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~ 319 (597)
T 3oja_B 255 GLVEVDLSYNELEKIM-YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERN 319 (597)
T ss_dssp TCSEEECCSSCCCEEE-SGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGG
T ss_pred CCCEEECCCCccCCCC-HHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcc
Confidence 5555556666555554 4556666666666666666666555555566666666666666655443
No 42
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=2.5e-20 Score=136.60 Aligned_cols=170 Identities=21% Similarity=0.249 Sum_probs=130.1
Q ss_pred CCCCCccEEecCCCcceecccc-----------------cccCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCcc
Q psy3781 3 AKEAQVEQADLSYNRLHVVNSK-----------------LFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKL 64 (183)
Q Consensus 3 ~~~~~l~~l~l~~~~i~~l~~~-----------------~~~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l 64 (183)
..+++|+.|++++|.+..++.. ...+++|+.|++++|.++.+++ .+..+++|++|++++|.+
T Consensus 77 ~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 77 ESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp TTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred hhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence 4456666666666665543321 0125678888888888886654 566788999999999998
Q ss_pred ccccCcc---ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhc
Q psy3781 65 ETIDIDF---NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYEL 141 (183)
Q Consensus 65 ~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~ 141 (183)
+.++... .+++|++|++++|.++.++... .+++|+.|++++|.++++ +..+..+++|+.|++++|.++.+|..+
T Consensus 157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~L~~N~l~~l~~~~ 233 (317)
T 3o53_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFM--GPEFQSAAGVTWISLRNNKLVLIEKAL 233 (317)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCEE--CGGGGGGTTCSEEECTTSCCCEECTTC
T ss_pred CcccHHHHhhccCcCCEEECCCCcCccccccc-ccccCCEEECCCCcCCcc--hhhhcccCcccEEECcCCcccchhhHh
Confidence 8765443 5688999999999998775433 478999999999999988 456888999999999999999999989
Q ss_pred cccCcccEEeccCCcCC-CCcHHHhhhChHHHHHH
Q psy3781 142 GLAQQLHHLNLVGNCFK-YPRQDILQKGTPFLLSY 175 (183)
Q Consensus 142 ~~~~~L~~l~l~~n~~~-~~~~~~~~~~~~~~~~~ 175 (183)
..+++|+.+++++|++. +..+..+...+.....+
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~ 268 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHH
T ss_pred hcCCCCCEEEccCCCccCcCHHHHHhccccceEEE
Confidence 99999999999999998 55666666655443333
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=7.1e-20 Score=140.13 Aligned_cols=160 Identities=26% Similarity=0.363 Sum_probs=129.7
Q ss_pred CCCCCCccEEecCCCcceecccccc-cCCCccEEEcCCCcCCCCCc--------------------------cccCCCCC
Q psy3781 2 IAKEAQVEQADLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPP--------------------------DLLNLRHL 54 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~l~~~~~-~~~~l~~l~l~~~~l~~l~~--------------------------~~~~~~~L 54 (183)
|..+++|+.|++++|.+..+++..+ .+++|++|++++|.++.++. .|..+++|
T Consensus 119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 198 (452)
T 3zyi_A 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198 (452)
T ss_dssp TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC
T ss_pred ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC
Confidence 4566777777777777776666533 56777777777776664433 25567788
Q ss_pred ceEEcCCCccccccCccccCCCCeEeCCCCCCCCc-chhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCC
Q psy3781 55 VYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQI-PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNN 133 (183)
Q Consensus 55 ~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~ 133 (183)
++|++++|.++.++....+++|++|++++|.++.+ +..+..+++|+.|++++|.++.+. +..+..+++|+.|++++|.
T Consensus 199 ~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 199 KYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE-RNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp CEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC-HHHhcCCCCCCEEECCCCc
Confidence 89999999988886544889999999999999987 556778999999999999999987 7889999999999999999
Q ss_pred CccCChh-ccccCcccEEeccCCcCCCCcH
Q psy3781 134 IRKIPYE-LGLAQQLHHLNLVGNCFKYPRQ 162 (183)
Q Consensus 134 l~~~~~~-~~~~~~L~~l~l~~n~~~~~~~ 162 (183)
++.++.. +..+++|+.|++++|++...-.
T Consensus 278 l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 278 LSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp CSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred CCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 9988765 6789999999999999877653
No 44
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=6.8e-20 Score=135.61 Aligned_cols=155 Identities=25% Similarity=0.359 Sum_probs=116.3
Q ss_pred CCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeC
Q psy3781 2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNL 81 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l 81 (183)
+..+++|+.|++++|.+..++. +..+++++.+++++|.++.++. +..+++|++|++++|.++.++....+++|++|++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 250 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEI 250 (347)
T ss_dssp GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEEC
Confidence 4567888899999888887766 5677888888888888776655 6677788888888888877766227778888888
Q ss_pred CCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCC-hhccccCcccEEeccCCcCCCC
Q psy3781 82 SSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIP-YELGLAQQLHHLNLVGNCFKYP 160 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~-~~~~~~~~L~~l~l~~n~~~~~ 160 (183)
++|.++.+ +.+..+++|+.|++++|.++++ ..+..+++|+.|++++|.+++.+ ..+..+++|+.|++++|++++.
T Consensus 251 ~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 251 GTNQISDI-NAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp CSSCCCCC-GGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred CCCccCCC-hhHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence 88877776 3455677888888888877775 34667778888888888777543 4467778888888888887777
Q ss_pred cH
Q psy3781 161 RQ 162 (183)
Q Consensus 161 ~~ 162 (183)
++
T Consensus 327 ~~ 328 (347)
T 4fmz_A 327 RP 328 (347)
T ss_dssp GG
T ss_pred cC
Confidence 65
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=6.6e-20 Score=144.98 Aligned_cols=152 Identities=20% Similarity=0.278 Sum_probs=84.2
Q ss_pred EEecCCCcceecccccccCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCC
Q psy3781 10 QADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKF 86 (183)
Q Consensus 10 ~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~ 86 (183)
++++++..++.+|..+. ++++.|++++|+++.+++ .|.++++|++|++++|.++.+++++ .+++|++|++++|++
T Consensus 35 ~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 34444445555555431 355666666666665543 3555666666666666666555543 555666666666666
Q ss_pred CCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCcc--CChhccccCcccEEeccCCcCCCCcHH
Q psy3781 87 QQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRK--IPYELGLAQQLHHLNLVGNCFKYPRQD 163 (183)
Q Consensus 87 ~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~--~~~~~~~~~~L~~l~l~~n~~~~~~~~ 163 (183)
+.++. .+..+++|+.|++++|.++++. +..++.+++|++|++++|.++. +|..+..+++|++|++++|.+++..+.
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~-~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCST-TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCC-hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 65544 2344556666666666665553 3445556666666666665553 344455556666666666665555444
Q ss_pred H
Q psy3781 164 I 164 (183)
Q Consensus 164 ~ 164 (183)
.
T Consensus 192 ~ 192 (635)
T 4g8a_A 192 D 192 (635)
T ss_dssp G
T ss_pred c
Confidence 3
No 46
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=3.1e-20 Score=146.62 Aligned_cols=158 Identities=21% Similarity=0.251 Sum_probs=91.6
Q ss_pred CCCCCccEEecCCCcceeccc--ccccCCCccEEEcCCCcCCC-CCccccCCCCCceEEcCCCcccc--ccCcc-ccCCC
Q psy3781 3 AKEAQVEQADLSYNRLHVVNS--KLFDITSIRELDLSHNLIQN-LPPDLLNLRHLVYMNLENNKLET--IDIDF-NFGHL 76 (183)
Q Consensus 3 ~~~~~l~~l~l~~~~i~~l~~--~~~~~~~l~~l~l~~~~l~~-l~~~~~~~~~L~~L~l~~n~l~~--~~~~~-~~~~L 76 (183)
..+++|+.|++++|.+..+++ .+..+++|+.|++++|.++. .+..+..+++|++|++++|.+.. ++..+ .+++|
T Consensus 396 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 475 (606)
T 3vq2_A 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475 (606)
T ss_dssp TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC
Confidence 344455555555555443332 23345555555555555542 33345555666666666666554 33334 56666
Q ss_pred CeEeCCCCCCCCcc-hhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccC-cccEEeccC
Q psy3781 77 RELNLSSNKFQQIP-KCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQ-QLHHLNLVG 154 (183)
Q Consensus 77 ~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~-~L~~l~l~~ 154 (183)
++|++++|.++.++ ..+..+++|+.|++++|.+++.. +..+..+++|+.|++++|.++.+|..+..++ +|+.+++++
T Consensus 476 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD-SSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE-GGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCS
T ss_pred CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcC-HHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccC
Confidence 66666666666543 34555666677777766666655 5666666677777777777766666666665 477777777
Q ss_pred CcCCCCc
Q psy3781 155 NCFKYPR 161 (183)
Q Consensus 155 n~~~~~~ 161 (183)
|++.+..
T Consensus 555 N~~~c~c 561 (606)
T 3vq2_A 555 NSVACIC 561 (606)
T ss_dssp CCCCCSS
T ss_pred CCcccCC
Confidence 7766543
No 47
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=7.9e-20 Score=137.35 Aligned_cols=159 Identities=21% Similarity=0.286 Sum_probs=118.7
Q ss_pred CCCCCCccEEecCCCcceeccccc-ccCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCccccccC----------
Q psy3781 2 IAKEAQVEQADLSYNRLHVVNSKL-FDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDI---------- 69 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~l~~~~-~~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~---------- 69 (183)
|..+++|+.|++++|.+..++..+ ..+++|++|++++|.++.+++ .+..+++|++|++++|.++.++.
T Consensus 113 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~ 192 (390)
T 3o6n_A 113 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN 192 (390)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEE
T ss_pred hcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceee
Confidence 566777888888888888777765 467788888888887776544 35666777777777766553221
Q ss_pred --------------------------------------------------cc-ccCCCCeEeCCCCCCCCc-chhccCCC
Q psy3781 70 --------------------------------------------------DF-NFGHLRELNLSSNKFQQI-PKCIFHLD 97 (183)
Q Consensus 70 --------------------------------------------------~~-~~~~L~~L~l~~~~~~~~-~~~~~~~~ 97 (183)
.+ .+++|++|++++|.++.+ +..+..++
T Consensus 193 l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (390)
T 3o6n_A 193 VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272 (390)
T ss_dssp CCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred cccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccc
Confidence 11 456788888888888866 45677788
Q ss_pred CCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcH
Q psy3781 98 NLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQ 162 (183)
Q Consensus 98 ~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 162 (183)
+|+.|++++|.++++ +..+..+++|+.|++++|.++.+|..+..+++|+.|++++|+++..+.
T Consensus 273 ~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 335 (390)
T 3o6n_A 273 RLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL 335 (390)
T ss_dssp SCCEEECCSSCCCEE--ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCC
T ss_pred cCCEEECCCCcCccc--CcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCc
Confidence 999999999998887 555677888999999999888888878888888888888888877653
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=139.06 Aligned_cols=158 Identities=23% Similarity=0.317 Sum_probs=103.6
Q ss_pred CCccEEecCCCcceeccc-ccccCCCccEEEcCCCcCCCCC-ccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeC
Q psy3781 6 AQVEQADLSYNRLHVVNS-KLFDITSIRELDLSHNLIQNLP-PDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNL 81 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l~~-~~~~~~~l~~l~l~~~~l~~l~-~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l 81 (183)
++++.|++++|.+..++. .+.++++|+.|++++|.++.++ ..|..+++|++|++++|.++.++... .+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 367777777777776665 3456777777777777777554 34666777777777777777666653 6667777777
Q ss_pred CCCCCCCcch--hccCCCCCcEEEcCCC-ccccccCchhhhcCCCccEEeCCCCCCccC-ChhccccCcccEEeccCCcC
Q psy3781 82 SSNKFQQIPK--CIFHLDNLEILILNNN-DIEEINQPEKLVKMQKLTVLDLSNNNIRKI-PYELGLAQQLHHLNLVGNCF 157 (183)
Q Consensus 82 ~~~~~~~~~~--~~~~~~~L~~l~l~~n-~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~-~~~~~~~~~L~~l~l~~n~~ 157 (183)
++|.++.++. .+..+++|+.|++++| .+..+. +..++.+++|+.+++++|.++.+ |..+..+++|++|++++|.+
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 7777776654 4555677777777776 355554 45666677777777777776644 45566666666666666666
Q ss_pred CCCcHHH
Q psy3781 158 KYPRQDI 164 (183)
Q Consensus 158 ~~~~~~~ 164 (183)
...+...
T Consensus 211 ~~~~~~~ 217 (353)
T 2z80_A 211 ILLLEIF 217 (353)
T ss_dssp TTHHHHH
T ss_pred ccchhhh
Confidence 5544433
No 49
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=3.9e-20 Score=127.75 Aligned_cols=155 Identities=25% Similarity=0.312 Sum_probs=133.1
Q ss_pred CCCccEEecCCCcceeccccc-ccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCCeEe
Q psy3781 5 EAQVEQADLSYNRLHVVNSKL-FDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLRELN 80 (183)
Q Consensus 5 ~~~l~~l~l~~~~i~~l~~~~-~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~ 80 (183)
.++++.|++++|.+..+++.. ..+++|++|++++|+++.++.. |..+++|++|++++|.++.++... .+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 457999999999999888775 4799999999999999988776 578999999999999999888764 889999999
Q ss_pred CCCCCCCCcchh-ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCC
Q psy3781 81 LSSNKFQQIPKC-IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKY 159 (183)
Q Consensus 81 l~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~ 159 (183)
+++|.++.++.. +..+++|+.|++++|.++++. +..+..+++|+.+++++|.+.. .++.++.++++.|.+++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBCC------CTTTTHHHHHHHHHCTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEecCCCeec------CCCCHHHHHHHHHhCCc
Confidence 999999988764 567899999999999999885 5668889999999999997653 45678888888888887
Q ss_pred CcHHHhh
Q psy3781 160 PRQDILQ 166 (183)
Q Consensus 160 ~~~~~~~ 166 (183)
..+..+.
T Consensus 180 ~ip~~~~ 186 (208)
T 2o6s_A 180 VVRNSAG 186 (208)
T ss_dssp TBBCTTS
T ss_pred eeeccCc
Confidence 7765544
No 50
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=9.8e-20 Score=143.78 Aligned_cols=160 Identities=19% Similarity=0.339 Sum_probs=143.1
Q ss_pred CCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCc--cccCCCCCceEEcCCCccccccCc-c-ccCCCCe
Q psy3781 3 AKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP--DLLNLRHLVYMNLENNKLETIDID-F-NFGHLRE 78 (183)
Q Consensus 3 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~--~~~~~~~L~~L~l~~n~l~~~~~~-~-~~~~L~~ 78 (183)
..+++|+.|++++|.+..++..+..+++|+.|++++|.++.+++ .+..+++|++|++++|.+....+. + .+++|++
T Consensus 373 ~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 452 (606)
T 3vq2_A 373 LGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452 (606)
T ss_dssp HCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred ccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCE
Confidence 46789999999999999999888899999999999999986654 688899999999999999875554 4 8899999
Q ss_pred EeCCCCCCCC--cchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccC-ChhccccCcccEEeccCC
Q psy3781 79 LNLSSNKFQQ--IPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI-PYELGLAQQLHHLNLVGN 155 (183)
Q Consensus 79 L~l~~~~~~~--~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~-~~~~~~~~~L~~l~l~~n 155 (183)
|++++|.++. ++..+..+++|+.|++++|.+++.. +..++.+++|+.|++++|.++++ |..+..+++|+.|++++|
T Consensus 453 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS-WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred EECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccC-hhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence 9999999985 5667788999999999999999886 78899999999999999999976 677899999999999999
Q ss_pred cCCCCcHH
Q psy3781 156 CFKYPRQD 163 (183)
Q Consensus 156 ~~~~~~~~ 163 (183)
.++..+..
T Consensus 532 ~l~~~p~~ 539 (606)
T 3vq2_A 532 RIETSKGI 539 (606)
T ss_dssp CCCCEESC
T ss_pred cCcccCHh
Confidence 99977765
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=6.8e-21 Score=141.43 Aligned_cols=83 Identities=23% Similarity=0.378 Sum_probs=50.4
Q ss_pred CCCCCCccEEecCCCcceecccc-cccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccC--cc-ccCCC
Q psy3781 2 IAKEAQVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDI--DF-NFGHL 76 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~--~~-~~~~L 76 (183)
|.++++|+.|++++|.+..+++. +.++++|++|++++|.++.++.. +..+++|++|++++|.++.++. .+ .+++|
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L 151 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCC
Confidence 45566666777766666655433 44566666666666666666554 5556666666666666665554 22 55555
Q ss_pred CeEeCCCC
Q psy3781 77 RELNLSSN 84 (183)
Q Consensus 77 ~~L~l~~~ 84 (183)
++|++++|
T Consensus 152 ~~L~l~~n 159 (353)
T 2z80_A 152 QILRVGNM 159 (353)
T ss_dssp CEEEEEES
T ss_pred cEEECCCC
Confidence 66655555
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=1.2e-19 Score=133.52 Aligned_cols=128 Identities=21% Similarity=0.371 Sum_probs=88.8
Q ss_pred CCccEEecCCCcceeccc-ccccCCCccEEEcCCCcCCCC-CccccCCCCCceEEcCCCccccccCccccCCCCeEeCCC
Q psy3781 6 AQVEQADLSYNRLHVVNS-KLFDITSIRELDLSHNLIQNL-PPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSS 83 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l~~-~~~~~~~l~~l~l~~~~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~ 83 (183)
+.++.|++++|.+..+++ .+.++++|++|++++|.++.+ |..+..+++|++|++++|.++.++.... ++|++|++++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~~L~~L~l~~ 130 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVHE 130 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC-TTCCEEECCS
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc-ccccEEECCC
Confidence 579999999999998877 466899999999999999977 6678899999999999999987765542 5667777777
Q ss_pred CCCCCcch-hccCCCCCcEEEcCCCcccc--ccCchhhhcCCCccEEeCCCCCCc
Q psy3781 84 NKFQQIPK-CIFHLDNLEILILNNNDIEE--INQPEKLVKMQKLTVLDLSNNNIR 135 (183)
Q Consensus 84 ~~~~~~~~-~~~~~~~L~~l~l~~n~~~~--~~~~~~~~~~~~L~~l~l~~n~l~ 135 (183)
|.++.++. .+..+++|+.|++++|.+.. .. +..+..+++|+.+++++|.++
T Consensus 131 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE-NGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC-TTGGGGCTTCCEEECCSSCCC
T ss_pred CcccccCHhHhcCCccccEEECCCCcCCccCcC-hhhccCCCCcCEEECCCCccc
Confidence 76665543 34445555555555555542 11 233444444444444444333
No 53
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=7.6e-21 Score=151.05 Aligned_cols=158 Identities=18% Similarity=0.289 Sum_probs=118.7
Q ss_pred CCCCCCccEEecCCCccee------------------cccccc--cCCCccEEEcCCCcCC-CCCccccCCCCCceEEcC
Q psy3781 2 IAKEAQVEQADLSYNRLHV------------------VNSKLF--DITSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLE 60 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~------------------l~~~~~--~~~~l~~l~l~~~~l~-~l~~~~~~~~~L~~L~l~ 60 (183)
|+++++|+.|++++|.+.. +|..+. ++++|++|++++|.+. .+|..+..+++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 5678889999999998887 888888 8889999999998866 678788888889999998
Q ss_pred CCc-ccc--ccCcc-cc------CCCCeEeCCCCCCCCcch--hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEe
Q psy3781 61 NNK-LET--IDIDF-NF------GHLRELNLSSNKFQQIPK--CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128 (183)
Q Consensus 61 ~n~-l~~--~~~~~-~~------~~L~~L~l~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~ 128 (183)
+|. ++. +|..+ .+ ++|++|++++|+++.+|. .+..+++|+.|++++|.+.+.. + .++.+++|+.|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~i-p-~~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-P-AFGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEEC-C-CCEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccch-h-hhCCCCCCCEEE
Confidence 887 764 66555 43 788888888888887777 7777888888888888887332 4 566666666666
Q ss_pred CCCCCCccCChhccccCc-ccEEeccCCcCCCCc
Q psy3781 129 LSNNNIRKIPYELGLAQQ-LHHLNLVGNCFKYPR 161 (183)
Q Consensus 129 l~~n~l~~~~~~~~~~~~-L~~l~l~~n~~~~~~ 161 (183)
+++|.++.+|..+..+++ |+.|++++|.++..+
T Consensus 360 L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp 393 (636)
T 4eco_A 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLKYIP 393 (636)
T ss_dssp CCSSEEEECCTTSEEECTTCCEEECCSSCCSSCC
T ss_pred CCCCccccccHhhhhhcccCcEEEccCCcCcccc
Confidence 666666666666666666 666666666665433
No 54
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=5.5e-20 Score=134.48 Aligned_cols=156 Identities=17% Similarity=0.168 Sum_probs=75.6
Q ss_pred CCCCCccEEecCCCcceecccccccC-----CCccEEEcCCCcCCCCC-ccccCCCCCceEEcCCCccccc---c-Cc--
Q psy3781 3 AKEAQVEQADLSYNRLHVVNSKLFDI-----TSIRELDLSHNLIQNLP-PDLLNLRHLVYMNLENNKLETI---D-ID-- 70 (183)
Q Consensus 3 ~~~~~l~~l~l~~~~i~~l~~~~~~~-----~~l~~l~l~~~~l~~l~-~~~~~~~~L~~L~l~~n~l~~~---~-~~-- 70 (183)
..+++|+.|++++|.+..+|..+..+ ++|++|++++|+++.++ ..+..+++|++|++++|.+... + ..
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 34445555555555554443333333 45555555555555443 3344455555555555553321 1 11
Q ss_pred cccCCCCeEeCCCCCCCCcc---hh-ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCc
Q psy3781 71 FNFGHLRELNLSSNKFQQIP---KC-IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQ 146 (183)
Q Consensus 71 ~~~~~L~~L~l~~~~~~~~~---~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~ 146 (183)
..+++|++|++++|.++.++ .. +..+++|+.|++++|.+++......+..+++|+.|++++|.++.+|..+. ++
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~ 275 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AK 275 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SE
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CC
Confidence 13445555555555555322 11 12345555555555555554311333445556666666666665555443 55
Q ss_pred ccEEeccCCcCCCC
Q psy3781 147 LHHLNLVGNCFKYP 160 (183)
Q Consensus 147 L~~l~l~~n~~~~~ 160 (183)
|+.|++++|.+++.
T Consensus 276 L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 276 LSVLDLSYNRLDRN 289 (312)
T ss_dssp EEEEECCSSCCCSC
T ss_pred ceEEECCCCCCCCC
Confidence 66666666666555
No 55
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=7e-20 Score=144.82 Aligned_cols=160 Identities=26% Similarity=0.379 Sum_probs=136.2
Q ss_pred CccEEecCCCcceecccc-cccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCC
Q psy3781 7 QVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLS 82 (183)
Q Consensus 7 ~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~ 82 (183)
+++.|++++|.|+.+++. +.++++|++|++++|+++.+++. |.++++|++|++++|+++.++... .+.+|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 799999999999999875 55899999999999999988765 788999999999999999998765 88999999999
Q ss_pred CCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh-hccccCc----ccEEeccCCc
Q psy3781 83 SNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY-ELGLAQQ----LHHLNLVGNC 156 (183)
Q Consensus 83 ~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~----L~~l~l~~n~ 156 (183)
+|+++.++. .+..+++|+.|++++|.++....+..++.++.|++|++++|.++.++. .+..+.+ ...++++.|.
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence 999999876 467899999999999999887657888999999999999999997653 3444433 3468888888
Q ss_pred CCCCcHHHhh
Q psy3781 157 FKYPRQDILQ 166 (183)
Q Consensus 157 ~~~~~~~~~~ 166 (183)
+...++..+.
T Consensus 213 l~~i~~~~~~ 222 (635)
T 4g8a_A 213 MNFIQPGAFK 222 (635)
T ss_dssp CCEECTTTTT
T ss_pred ccccCccccc
Confidence 8776665543
No 56
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=2.5e-20 Score=151.82 Aligned_cols=157 Identities=19% Similarity=0.304 Sum_probs=119.8
Q ss_pred CCCCCCccEEecCCCccee------------------cccccc--cCCCccEEEcCCCcCC-CCCccccCCCCCceEEcC
Q psy3781 2 IAKEAQVEQADLSYNRLHV------------------VNSKLF--DITSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLE 60 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~------------------l~~~~~--~~~~l~~l~l~~~~l~-~l~~~~~~~~~L~~L~l~ 60 (183)
|.++++|+.|++++|.+.. +|..+. ++++|+.|++++|.+. .+|..+..+++|++|+++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 4667888888888888887 788876 8888888888888765 677778888888888888
Q ss_pred CCc-ccc--ccCcc-c-------cCCCCeEeCCCCCCCCcch--hccCCCCCcEEEcCCCccccccCchhhhcCCCccEE
Q psy3781 61 NNK-LET--IDIDF-N-------FGHLRELNLSSNKFQQIPK--CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127 (183)
Q Consensus 61 ~n~-l~~--~~~~~-~-------~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l 127 (183)
+|. ++. +|..+ . +++|++|++++|.++.+|. .+..+++|+.|++++|.++.+ + .++.+++|+.|
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~l--p-~~~~L~~L~~L 600 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL--E-AFGTNVKLTDL 600 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBC--C-CCCTTSEESEE
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccc--h-hhcCCCcceEE
Confidence 887 664 55443 3 3478888888888887777 677788888888888887744 4 67777778888
Q ss_pred eCCCCCCccCChhccccCc-ccEEeccCCcCCCCc
Q psy3781 128 DLSNNNIRKIPYELGLAQQ-LHHLNLVGNCFKYPR 161 (183)
Q Consensus 128 ~l~~n~l~~~~~~~~~~~~-L~~l~l~~n~~~~~~ 161 (183)
++++|.++.+|..+..+++ |+.|++++|.+...+
T Consensus 601 ~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp 635 (876)
T 4ecn_A 601 KLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP 635 (876)
T ss_dssp ECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCC
T ss_pred ECcCCccccchHHHhhccccCCEEECcCCCCCcCc
Confidence 8888877777777777777 777777777776444
No 57
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=7.5e-20 Score=140.75 Aligned_cols=159 Identities=26% Similarity=0.368 Sum_probs=114.8
Q ss_pred CCccEEecCCCcceeccc-ccccCCCccEEEcCCCcCCCC-CccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeC
Q psy3781 6 AQVEQADLSYNRLHVVNS-KLFDITSIRELDLSHNLIQNL-PPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNL 81 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l~~-~~~~~~~l~~l~l~~~~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l 81 (183)
+.++.|++++|.+..+++ .+.++++|++|++++|.++.+ +..|..+++|++|++++|.++.++... .+++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 367778888888876654 455677888888888877755 455777788888888888887777654 6777888888
Q ss_pred CCCCCCCc-chhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCcCCC
Q psy3781 82 SSNKFQQI-PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKY 159 (183)
Q Consensus 82 ~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~~~ 159 (183)
++|.+..+ +..+..+++|+.|++++|.+..+. +..+..+++|+.|++++|.++.++.. +..+++|+.|++++|.+.+
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS-HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC-TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeC-hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 88877765 335566777888888888777765 56677777788888877777777653 6677777777777777666
Q ss_pred CcHHHh
Q psy3781 160 PRQDIL 165 (183)
Q Consensus 160 ~~~~~~ 165 (183)
.++..+
T Consensus 191 ~~~~~~ 196 (477)
T 2id5_A 191 IRDYSF 196 (477)
T ss_dssp ECTTCS
T ss_pred eChhhc
Confidence 555443
No 58
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=2.4e-19 Score=137.04 Aligned_cols=111 Identities=26% Similarity=0.401 Sum_probs=53.9
Q ss_pred CCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCCCc-chhccCCCCCcEEEcCCCccccccCchhhhcCCCccEE
Q psy3781 51 LRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQI-PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127 (183)
Q Consensus 51 ~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l 127 (183)
+++|++|++++|.+..+++.. .+++|++|++++|.++.+ +..+..+++|+.|++++|.+++.. +..+..+++|++|
T Consensus 298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L 376 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG-DQSFLGLPNLKEL 376 (455)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccC-hhhccccccccEE
Confidence 334444444444444333222 444455555555544443 223344455555555555555443 4445555555555
Q ss_pred eCCCCCCccCChh-ccccCcccEEeccCCcCCCCcH
Q psy3781 128 DLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYPRQ 162 (183)
Q Consensus 128 ~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~~~~~~ 162 (183)
++++|.++++|.. +..+++|+.|++++|++.+..+
T Consensus 377 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 377 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 5555555555433 3455555555555555555443
No 59
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.83 E-value=2.1e-19 Score=139.58 Aligned_cols=156 Identities=23% Similarity=0.315 Sum_probs=134.2
Q ss_pred CCCCCccEEecCCCccee-cccccccCCCccEEEcCCCcCCCC---CccccCCCCCceEEcCCCcccc-ccCcc--ccCC
Q psy3781 3 AKEAQVEQADLSYNRLHV-VNSKLFDITSIRELDLSHNLIQNL---PPDLLNLRHLVYMNLENNKLET-IDIDF--NFGH 75 (183)
Q Consensus 3 ~~~~~l~~l~l~~~~i~~-l~~~~~~~~~l~~l~l~~~~l~~l---~~~~~~~~~L~~L~l~~n~l~~-~~~~~--~~~~ 75 (183)
..+++|+.|++++|.+.. ++..+..+++|+.|++++|+++.+ |..+..+++|++|++++|.+.. ++... .+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 578899999999999996 677777899999999999999854 4568889999999999999997 77763 7789
Q ss_pred CCeEeCCCCCCCC-cchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEecc
Q psy3781 76 LRELNLSSNKFQQ-IPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLV 153 (183)
Q Consensus 76 L~~L~l~~~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~ 153 (183)
|++|++++|.++. ++..+. ++|+.|++++|.++.+ +..+..+++|+.|++++|.++.+|.. +..+++|+.++++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~i--p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSI--PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCC--CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccccc--chhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECc
Confidence 9999999999974 344332 6899999999999977 66677999999999999999999987 8889999999999
Q ss_pred CCcCCCCcH
Q psy3781 154 GNCFKYPRQ 162 (183)
Q Consensus 154 ~n~~~~~~~ 162 (183)
+|++.+..+
T Consensus 477 ~N~~~c~c~ 485 (520)
T 2z7x_B 477 TNPWDCSCP 485 (520)
T ss_dssp SSCBCCCHH
T ss_pred CCCCcccCC
Confidence 999998754
No 60
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=4.6e-19 Score=141.67 Aligned_cols=121 Identities=28% Similarity=0.443 Sum_probs=78.7
Q ss_pred CccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCCCcch---------hccCCCCCcEEEcCCCcccccc
Q psy3781 45 PPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQIPK---------CIFHLDNLEILILNNNDIEEIN 113 (183)
Q Consensus 45 ~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~---------~~~~~~~L~~l~l~~n~~~~~~ 113 (183)
|..+..+++|++|++++|.++.+++.. .+++|++|++++|.++.++. .+..+++|+.|++++|.++.+.
T Consensus 473 p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~ 552 (680)
T 1ziw_A 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCC
T ss_pred CcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCC
Confidence 444556666777777777776666553 66677777777776664421 1345666777777777776654
Q ss_pred CchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCcCCCCcHHHhh
Q psy3781 114 QPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYPRQDILQ 166 (183)
Q Consensus 114 ~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~ 166 (183)
+..+..+++|+.+++++|.++.+|.. +..+++|+.|++++|.+++.++..+.
T Consensus 553 -~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 553 -VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp -TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred -HHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence 44566777777777777777766654 45667777777777777777666543
No 61
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=1.1e-19 Score=135.32 Aligned_cols=155 Identities=27% Similarity=0.372 Sum_probs=133.7
Q ss_pred CCccEEecCCCcceecccccc--cCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCccccccCcc--ccCCCCeEe
Q psy3781 6 AQVEQADLSYNRLHVVNSKLF--DITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELN 80 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l~~~~~--~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~ 80 (183)
..++.|++++|.++.++...+ .+++|+.|++++|+++.+++ .|..+++|++|++++|.++.++... .+++|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 358999999999999887765 79999999999999998875 4888999999999999999988765 889999999
Q ss_pred CCCCCCCCcc-hhccCCCCCcEEEcCCCccccccCchhh---hcCCCccEEeCCCCCCccCChh-ccccCc--ccEEecc
Q psy3781 81 LSSNKFQQIP-KCIFHLDNLEILILNNNDIEEINQPEKL---VKMQKLTVLDLSNNNIRKIPYE-LGLAQQ--LHHLNLV 153 (183)
Q Consensus 81 l~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~---~~~~~L~~l~l~~n~l~~~~~~-~~~~~~--L~~l~l~ 153 (183)
+++|.++.++ ..+..+++|+.|++++|.++.+. ...+ ..+++|+.|++++|.++.++.. +..++. ++.|+++
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP-VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeC-HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEec
Confidence 9999999874 46778999999999999999985 4444 5689999999999999999854 677776 4889999
Q ss_pred CCcCCCCc
Q psy3781 154 GNCFKYPR 161 (183)
Q Consensus 154 ~n~~~~~~ 161 (183)
+|++...-
T Consensus 198 ~N~~~C~C 205 (361)
T 2xot_A 198 NNPLECDC 205 (361)
T ss_dssp SSCEECCH
T ss_pred CCCccCCc
Confidence 99998764
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=142.51 Aligned_cols=159 Identities=21% Similarity=0.428 Sum_probs=116.7
Q ss_pred CCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCc--cccCCCCCceEEcCCCccccccCcc--ccCCCCeE
Q psy3781 4 KEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP--DLLNLRHLVYMNLENNKLETIDIDF--NFGHLREL 79 (183)
Q Consensus 4 ~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~--~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L 79 (183)
.+++|+.|++++|.+..+++.+..+++|+.|++++|.++..++ .+..+++|++|++++|.+....+.. .+++|++|
T Consensus 371 ~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 450 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450 (570)
T ss_dssp TCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred ccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence 4566666666666666666655567777777777777665433 4666777788888777777554433 67788888
Q ss_pred eCCCCCCC--CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCc
Q psy3781 80 NLSSNKFQ--QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNC 156 (183)
Q Consensus 80 ~l~~~~~~--~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~ 156 (183)
++++|.++ .+|..+..+++|+.|++++|.+++.. +..+..+++|+.|++++|.+++++.. +..+++|+.+++++|+
T Consensus 451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECcCCcCccccchhhhhcccCCCEEECCCCccccCC-hhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 88888776 35666777888888888888888776 67778888888888888888877644 7788888888888888
Q ss_pred CCCCcHH
Q psy3781 157 FKYPRQD 163 (183)
Q Consensus 157 ~~~~~~~ 163 (183)
+.+..+.
T Consensus 530 ~~~~~~~ 536 (570)
T 2z63_A 530 WDCSCPR 536 (570)
T ss_dssp BCCCTTT
T ss_pred ccCCCcc
Confidence 8876543
No 63
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=1.3e-19 Score=138.52 Aligned_cols=115 Identities=26% Similarity=0.342 Sum_probs=100.8
Q ss_pred CCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCCCcc-hhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEe
Q psy3781 52 RHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQIP-KCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128 (183)
Q Consensus 52 ~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~ 128 (183)
++|++|++++|.+....+.. .+++|++|++++|.++.++ ..+..+++|+.|++++|.++++. +..++.+++|+.|+
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID-SRMFENLDKLEVLD 353 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-GGGGTTCTTCCEEE
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC-hhHhcCcccCCEEE
Confidence 68999999999998776554 8899999999999999774 46778999999999999998886 78889999999999
Q ss_pred CCCCCCccC-ChhccccCcccEEeccCCcCCCCcHHHhhh
Q psy3781 129 LSNNNIRKI-PYELGLAQQLHHLNLVGNCFKYPRQDILQK 167 (183)
Q Consensus 129 l~~n~l~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 167 (183)
+++|.++.+ |..+..+++|++|++++|.+++.++..+..
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 393 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhcc
Confidence 999999976 567899999999999999999988876654
No 64
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=1.8e-19 Score=142.27 Aligned_cols=160 Identities=21% Similarity=0.285 Sum_probs=125.1
Q ss_pred CCCCCCccEEecCCCcceeccccc-ccCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCccccccC----------
Q psy3781 2 IAKEAQVEQADLSYNRLHVVNSKL-FDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDI---------- 69 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~l~~~~-~~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~---------- 69 (183)
|+.+++|+.|++++|.+..+|+.+ ..+++|+.|++++|.++.+++ .+..+++|++|++++|.++.++.
T Consensus 119 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~ 198 (597)
T 3oja_B 119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN 198 (597)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEE
T ss_pred HcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhh
Confidence 567788888888888888887775 478888888888888876554 46677777777777776654321
Q ss_pred --------------------------------------------------cc-ccCCCCeEeCCCCCCCCc-chhccCCC
Q psy3781 70 --------------------------------------------------DF-NFGHLRELNLSSNKFQQI-PKCIFHLD 97 (183)
Q Consensus 70 --------------------------------------------------~~-~~~~L~~L~l~~~~~~~~-~~~~~~~~ 97 (183)
.+ .+++|++|++++|.++.+ +..+..++
T Consensus 199 l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 278 (597)
T 3oja_B 199 VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278 (597)
T ss_dssp CCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred cccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence 12 456788888888888866 55677889
Q ss_pred CCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcHH
Q psy3781 98 NLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQD 163 (183)
Q Consensus 98 ~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 163 (183)
+|+.|++++|.++++ +..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+.+.+..
T Consensus 279 ~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~ 342 (597)
T 3oja_B 279 RLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLS 342 (597)
T ss_dssp SCCEEECTTSCCCEE--ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCC
T ss_pred CCCEEECCCCCCCCC--CcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChh
Confidence 999999999999887 5666778899999999999998888888888888888888888776543
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=1.1e-19 Score=140.36 Aligned_cols=120 Identities=23% Similarity=0.331 Sum_probs=73.5
Q ss_pred ccCCCCCceEEcCCCccccccCc-c--ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCc
Q psy3781 48 LLNLRHLVYMNLENNKLETIDID-F--NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKL 124 (183)
Q Consensus 48 ~~~~~~L~~L~l~~n~l~~~~~~-~--~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L 124 (183)
+..+++|++|++++|.++..++. + .+++|++|++++|.++.++. ...+++|+.|++++|.++++ +..+..+++|
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L 216 (487)
T 3oja_A 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFM--GPEFQSAAGV 216 (487)
T ss_dssp GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEE--CGGGGGGTTC
T ss_pred hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCC--CHhHcCCCCc
Confidence 34445555555555555543222 1 34555555555555554433 22356677777777777766 4457777788
Q ss_pred cEEeCCCCCCccCChhccccCcccEEeccCCcCC-CCcHHHhhhChH
Q psy3781 125 TVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFK-YPRQDILQKGTP 170 (183)
Q Consensus 125 ~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~~ 170 (183)
+.|++++|.++.+|..+..+++|+.+++++|++. +..+..+.....
T Consensus 217 ~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~ 263 (487)
T 3oja_A 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (487)
T ss_dssp SEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHH
T ss_pred cEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCC
Confidence 8888888888877777777788888888888877 344445544433
No 66
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.82 E-value=3.1e-19 Score=140.96 Aligned_cols=164 Identities=21% Similarity=0.302 Sum_probs=107.1
Q ss_pred CCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCC-CccccCCCCCceEEcCCCccc-cccCcc--ccCCCC
Q psy3781 2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNL-PPDLLNLRHLVYMNLENNKLE-TIDIDF--NFGHLR 77 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l-~~~~~~~~~L~~L~l~~n~l~-~~~~~~--~~~~L~ 77 (183)
|..+++|+.|++++|.+..+|..+..+++|+.|++++|.++.+ +..+..+++|++|++++|.+. .++... .+++|+
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 5667888888888888888888887888888888888888765 335666777777777777665 444442 666777
Q ss_pred eEeCCCCCCCCc---chhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccC-C-hhccccCcccEEec
Q psy3781 78 ELNLSSNKFQQI---PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI-P-YELGLAQQLHHLNL 152 (183)
Q Consensus 78 ~L~l~~~~~~~~---~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~-~-~~~~~~~~L~~l~l 152 (183)
+|++++|.++.+ +..+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|.++.. + ..+..+++|+.|++
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK-TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEEC-TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCC-HHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence 777777766644 234555666666666666666554 45555566666666666665533 1 22555556666666
Q ss_pred cCCcCCCCcHHHhh
Q psy3781 153 VGNCFKYPRQDILQ 166 (183)
Q Consensus 153 ~~n~~~~~~~~~~~ 166 (183)
++|.+.+..+..+.
T Consensus 433 ~~n~l~~~~~~~~~ 446 (606)
T 3t6q_A 433 SHSLLDISSEQLFD 446 (606)
T ss_dssp TTCCCBTTCTTTTT
T ss_pred CCCccCCcCHHHHh
Confidence 66655555544443
No 67
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.82 E-value=1.2e-18 Score=128.96 Aligned_cols=158 Identities=23% Similarity=0.353 Sum_probs=111.5
Q ss_pred CCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCC
Q psy3781 4 KEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSS 83 (183)
Q Consensus 4 ~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~ 83 (183)
.+++|+.|++++|.+..++. +..+++|+.+++++|.++.++. +..+++|+++++++|.+..++....+++|++|++++
T Consensus 153 ~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~ 230 (347)
T 4fmz_A 153 NMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGN 230 (347)
T ss_dssp TCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCS
T ss_pred hCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccC
Confidence 44455555555555554443 4455666666666666665544 555666666666666666555422677888888888
Q ss_pred CCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcHH
Q psy3781 84 NKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQD 163 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 163 (183)
|.++.++. +..+++|+.|++++|.++++ ..+..+++|+.+++++|.+++++ .+..+++|+.|++++|.+.+..+.
T Consensus 231 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 231 NKITDLSP-LANLSQLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHH
T ss_pred CccCCCcc-hhcCCCCCEEECCCCccCCC---hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChh
Confidence 88887765 66778888888888888775 35777888999999999888874 478888999999999998888877
Q ss_pred HhhhC
Q psy3781 164 ILQKG 168 (183)
Q Consensus 164 ~~~~~ 168 (183)
.+...
T Consensus 306 ~l~~l 310 (347)
T 4fmz_A 306 VIGGL 310 (347)
T ss_dssp HHHTC
T ss_pred Hhhcc
Confidence 76654
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.82 E-value=6.8e-20 Score=133.98 Aligned_cols=161 Identities=19% Similarity=0.195 Sum_probs=133.5
Q ss_pred CCCCccEEecCCCcce-eccccc--ccCCCccEEEcCCCcCCCCCccccCC-----CCCceEEcCCCccccccCc-c-cc
Q psy3781 4 KEAQVEQADLSYNRLH-VVNSKL--FDITSIRELDLSHNLIQNLPPDLLNL-----RHLVYMNLENNKLETIDID-F-NF 73 (183)
Q Consensus 4 ~~~~l~~l~l~~~~i~-~l~~~~--~~~~~l~~l~l~~~~l~~l~~~~~~~-----~~L~~L~l~~n~l~~~~~~-~-~~ 73 (183)
.+++|++|++++|.+. .+|..+ ..+++|+.|++++|.++.+|..+..+ ++|++|++++|.+..+++. + .+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 5789999999999998 577776 67999999999999999887777665 8999999999999988854 4 89
Q ss_pred CCCCeEeCCCCCCCC---cchhc--cCCCCCcEEEcCCCccccccC--chhhhcCCCccEEeCCCCCCccCC--hhcccc
Q psy3781 74 GHLRELNLSSNKFQQ---IPKCI--FHLDNLEILILNNNDIEEINQ--PEKLVKMQKLTVLDLSNNNIRKIP--YELGLA 144 (183)
Q Consensus 74 ~~L~~L~l~~~~~~~---~~~~~--~~~~~L~~l~l~~n~~~~~~~--~~~~~~~~~L~~l~l~~n~l~~~~--~~~~~~ 144 (183)
++|++|++++|++.. ++..+ ..+++|+.|++++|.++++.. ...+..+++|+.|++++|.+++.+ ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 999999999999763 23344 678999999999999985420 234467899999999999999755 346678
Q ss_pred CcccEEeccCCcCCCCcHHH
Q psy3781 145 QQLHHLNLVGNCFKYPRQDI 164 (183)
Q Consensus 145 ~~L~~l~l~~n~~~~~~~~~ 164 (183)
++|++|++++|.++..+..+
T Consensus 253 ~~L~~L~Ls~N~l~~ip~~~ 272 (312)
T 1wwl_A 253 SQLNSLNLSFTGLKQVPKGL 272 (312)
T ss_dssp TTCCEEECTTSCCSSCCSSC
T ss_pred CCCCEEECCCCccChhhhhc
Confidence 99999999999999766544
No 69
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=3.5e-19 Score=139.36 Aligned_cols=147 Identities=24% Similarity=0.299 Sum_probs=106.0
Q ss_pred CCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCC
Q psy3781 5 EAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSN 84 (183)
Q Consensus 5 ~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~ 84 (183)
+++|+.|++++|.++.+|. +.. +|+.|++++|.++.+|. .+++|++|++++|.++.++. .+++|++|++++|
T Consensus 99 l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 99 PASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNN 170 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSS
T ss_pred cCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCC
Confidence 3455556666655555555 332 56666666666666555 45667777777777776655 4567888888888
Q ss_pred CCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCc-------cEEeCCCCCCccCChhccccCcccEEeccCCcC
Q psy3781 85 KFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKL-------TVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCF 157 (183)
Q Consensus 85 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L-------~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~ 157 (183)
.++.+|. +. ++|+.|++++|.++.++ . +.. +| +.|++++|.++.+|..+..+++|+.|++++|++
T Consensus 171 ~L~~lp~-l~--~~L~~L~Ls~N~L~~lp--~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 171 QLTFLPE-LP--ESLEALDVSTNLLESLP--A-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CCSCCCC-CC--TTCCEEECCSSCCSSCC--C-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred CCCCcch-hh--CCCCEEECcCCCCCchh--h-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence 8888776 44 78889999999888763 3 433 66 999999999999999888899999999999999
Q ss_pred CCCcHHHhhh
Q psy3781 158 KYPRQDILQK 167 (183)
Q Consensus 158 ~~~~~~~~~~ 167 (183)
++..+..+.+
T Consensus 243 ~~~~p~~l~~ 252 (571)
T 3cvr_A 243 SSRIRESLSQ 252 (571)
T ss_dssp CHHHHHHHHH
T ss_pred CCcCHHHHHH
Confidence 9888776655
No 70
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=3e-19 Score=141.92 Aligned_cols=134 Identities=21% Similarity=0.272 Sum_probs=79.9
Q ss_pred CCCccEEEcCCCcCCCCCcccc-CCCCCceEEcCCCccccccCcc-c-cC-------CCCeEeCCCCCCCCcchhcc--C
Q psy3781 28 ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDIDF-N-FG-------HLRELNLSSNKFQQIPKCIF--H 95 (183)
Q Consensus 28 ~~~l~~l~l~~~~l~~l~~~~~-~~~~L~~L~l~~n~l~~~~~~~-~-~~-------~L~~L~l~~~~~~~~~~~~~--~ 95 (183)
+.+|+.|++++|.++.+|..+. .+++|++|++++|.++.++... . .. +|++|++++|+++.+|..++ .
T Consensus 432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~ 511 (636)
T 4eco_A 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511 (636)
T ss_dssp CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTT
T ss_pred CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhcc
Confidence 3455555555555555554432 3566666666666666555544 1 11 66666666666666666555 5
Q ss_pred CCCCcEEEcCCCccccccCchhhhcCCCccEEeCC------CCCCc-cCChhccccCcccEEeccCCcCCCCcHH
Q psy3781 96 LDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLS------NNNIR-KIPYELGLAQQLHHLNLVGNCFKYPRQD 163 (183)
Q Consensus 96 ~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~------~n~l~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 163 (183)
+++|+.|++++|.++++ +..+..+++|+.|+++ +|.+. .+|..+..+++|+.|++++|.++..+..
T Consensus 512 l~~L~~L~Ls~N~l~~i--p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~ 584 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSKF--PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK 584 (636)
T ss_dssp CTTCCEEECCSSCCSSC--CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC
T ss_pred CCCcCEEECCCCCCCCc--ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHh
Confidence 66667777777766664 5566666677777663 34433 5566666677777777777776544443
No 71
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=9.8e-19 Score=136.55 Aligned_cols=151 Identities=19% Similarity=0.336 Sum_probs=87.8
Q ss_pred CCCccEEecCCCcceeccc---ccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeC
Q psy3781 5 EAQVEQADLSYNRLHVVNS---KLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNL 81 (183)
Q Consensus 5 ~~~l~~l~l~~~~i~~l~~---~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l 81 (183)
+++|+.|++++|.+..++. .+..+++|+.|++++|+++.+|..+..+++|++|++++|.++.++... .++|++|++
T Consensus 360 l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~-~~~L~~L~L 438 (549)
T 2z81_A 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI-PQTLEVLDV 438 (549)
T ss_dssp STTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTS-CTTCSEEEC
T ss_pred cccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchh-cCCceEEEC
Confidence 3444444444444443321 133344444444444444444444444444444444444444333222 134555555
Q ss_pred CCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCcCCCC
Q psy3781 82 SSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYP 160 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~~~~ 160 (183)
++|+++.++ ..+++|+.|++++|.++.+ +. ...+++|+.|++++|.++.++.. +..+++|+.+++++|++.+.
T Consensus 439 s~N~l~~~~---~~l~~L~~L~Ls~N~l~~i--p~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 439 SNNNLDSFS---LFLPRLQELYISRNKLKTL--PD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp CSSCCSCCC---CCCTTCCEEECCSSCCSSC--CC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred CCCChhhhc---ccCChhcEEECCCCccCcC--CC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 555554432 2567788888888888765 33 45678888888888888876654 77888888888888888776
Q ss_pred cH
Q psy3781 161 RQ 162 (183)
Q Consensus 161 ~~ 162 (183)
.+
T Consensus 513 ~~ 514 (549)
T 2z81_A 513 CP 514 (549)
T ss_dssp HH
T ss_pred Cc
Confidence 65
No 72
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.81 E-value=1.1e-18 Score=136.84 Aligned_cols=156 Identities=21% Similarity=0.241 Sum_probs=134.1
Q ss_pred CCCCCccEEecCCCccee-cccccccCCCccEEEcCCCcCCCCC---ccccCCCCCceEEcCCCcccc-ccCcc--ccCC
Q psy3781 3 AKEAQVEQADLSYNRLHV-VNSKLFDITSIRELDLSHNLIQNLP---PDLLNLRHLVYMNLENNKLET-IDIDF--NFGH 75 (183)
Q Consensus 3 ~~~~~l~~l~l~~~~i~~-l~~~~~~~~~l~~l~l~~~~l~~l~---~~~~~~~~L~~L~l~~n~l~~-~~~~~--~~~~ 75 (183)
..+++|+.|++++|.+.. ++..+..+++|+.|++++|+++.++ ..+..+++|++|++++|.++. ++... .+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 567899999999999996 6667778999999999999999765 457889999999999999987 77764 7899
Q ss_pred CCeEeCCCCCCCCc-chhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEecc
Q psy3781 76 LRELNLSSNKFQQI-PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLV 153 (183)
Q Consensus 76 L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~ 153 (183)
|++|++++|.++.. +..+. ++|+.|++++|.++.+ +..+..+++|+.|++++|.++.+|.. +..+++|+.++++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~i--p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSI--PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCC--CTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCccc--ChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEec
Confidence 99999999999743 33332 6899999999999987 56666999999999999999999987 8899999999999
Q ss_pred CCcCCCCcH
Q psy3781 154 GNCFKYPRQ 162 (183)
Q Consensus 154 ~n~~~~~~~ 162 (183)
+|++.+..+
T Consensus 506 ~N~~~c~c~ 514 (562)
T 3a79_B 506 DNPWDCTCP 514 (562)
T ss_dssp SCCBCCCHH
T ss_pred CCCcCCCcc
Confidence 999998654
No 73
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=8.6e-20 Score=133.32 Aligned_cols=155 Identities=14% Similarity=0.150 Sum_probs=109.2
Q ss_pred CCCCCccEEecCCCcceecc-----cccccCCCccEEEcCCCcCCCCC-ccccCCCCCceEEcCCCcccc---ccCcc--
Q psy3781 3 AKEAQVEQADLSYNRLHVVN-----SKLFDITSIRELDLSHNLIQNLP-PDLLNLRHLVYMNLENNKLET---IDIDF-- 71 (183)
Q Consensus 3 ~~~~~l~~l~l~~~~i~~l~-----~~~~~~~~l~~l~l~~~~l~~l~-~~~~~~~~L~~L~l~~n~l~~---~~~~~-- 71 (183)
..+++|+.|++++|.+.... ..+..+++|+.|++++|.++.++ ..+..+++|++|++++|.+.. ++...
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 56778888888888877421 22335778888888888887655 456678888888888887653 22222
Q ss_pred -ccCCCCeEeCCCCCCCCcchh----ccCCCCCcEEEcCCCccccccCchhhhcC---CCccEEeCCCCCCccCChhccc
Q psy3781 72 -NFGHLRELNLSSNKFQQIPKC----IFHLDNLEILILNNNDIEEINQPEKLVKM---QKLTVLDLSNNNIRKIPYELGL 143 (183)
Q Consensus 72 -~~~~L~~L~l~~~~~~~~~~~----~~~~~~L~~l~l~~n~~~~~~~~~~~~~~---~~L~~l~l~~n~l~~~~~~~~~ 143 (183)
.+++|++|++++|+++.++.. +..+++|+.|++++|.+++.. +..+..+ ++|++|++++|.++.+|..+.
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~-p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~- 271 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATV-NPSAPRCMWSSALNSLNLSFAGLEQVPKGLP- 271 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCC-CSCCSSCCCCTTCCCEECCSSCCCSCCSCCC-
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccc-hhhHHhccCcCcCCEEECCCCCCCchhhhhc-
Confidence 567788888888888765442 345678888888888887764 4445554 578888888888887776653
Q ss_pred cCcccEEeccCCcCCCC
Q psy3781 144 AQQLHHLNLVGNCFKYP 160 (183)
Q Consensus 144 ~~~L~~l~l~~n~~~~~ 160 (183)
++|+.|++++|.+++.
T Consensus 272 -~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 272 -AKLRVLDLSSNRLNRA 287 (310)
T ss_dssp -SCCSCEECCSCCCCSC
T ss_pred -CCCCEEECCCCcCCCC
Confidence 6788888888887774
No 74
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=4e-19 Score=140.12 Aligned_cols=152 Identities=28% Similarity=0.397 Sum_probs=136.1
Q ss_pred CCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCC
Q psy3781 3 AKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLS 82 (183)
Q Consensus 3 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~ 82 (183)
..+..|+.|++.+|.+..++ .+..+++|+.|++++|.++.+++ +..+++|+.|++++|.+..++....+++|++|+++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLE 117 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECT
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEec
Confidence 34678999999999999886 47789999999999999998877 88899999999999999987743389999999999
Q ss_pred CCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCc
Q psy3781 83 SNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPR 161 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~ 161 (183)
+|.++.++ .+..+++|+.|++++|.++++ ..+..+++|+.|++++|.+++++. +..+++|+.|++++|.+.+.+
T Consensus 118 ~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 118 HNGISDIN-GLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR 191 (605)
T ss_dssp TSCCCCCG-GGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred CCCCCCCc-cccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh
Confidence 99999874 477899999999999999886 568889999999999999998877 899999999999999998874
No 75
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=6.3e-19 Score=135.62 Aligned_cols=133 Identities=24% Similarity=0.363 Sum_probs=84.8
Q ss_pred CCCCCCccEEecCCCcceec-ccccccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCC
Q psy3781 2 IAKEAQVEQADLSYNRLHVV-NSKLFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLR 77 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~l-~~~~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~ 77 (183)
|..+++|+.|++++|.+..+ +..+.++++|+.|++++|.++.++.. |..+++|++|++++|.+..+.+.. .+++|+
T Consensus 52 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 131 (477)
T 2id5_A 52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131 (477)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCC
Confidence 56677888888888888766 44455777888888888887777654 566777777777777777654433 666677
Q ss_pred eEeCCCCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc
Q psy3781 78 ELNLSSNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR 135 (183)
Q Consensus 78 ~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~ 135 (183)
+|++++|.++.++. .+..+++|+.|++++|.++++. +..+..+++|+.|++++|.++
T Consensus 132 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp EEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCCC
T ss_pred EEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcCc
Confidence 77777666665432 4445566666666666665543 333444444444444444443
No 76
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=2.1e-19 Score=140.78 Aligned_cols=165 Identities=25% Similarity=0.376 Sum_probs=141.6
Q ss_pred CCCCCccEEecCCCcceec---ccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccC--cc-ccCCC
Q psy3781 3 AKEAQVEQADLSYNRLHVV---NSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDI--DF-NFGHL 76 (183)
Q Consensus 3 ~~~~~l~~l~l~~~~i~~l---~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~--~~-~~~~L 76 (183)
..+++|+.|++++|.+... +..+..+++|+.+++++|.++.++..+..+++|++|++++|.+...++ .+ .+++|
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 4578899999999988855 556668999999999999999888778899999999999999987654 33 88999
Q ss_pred CeEeCCCCCCCCc-chhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccC-ChhccccCcccEEeccC
Q psy3781 77 RELNLSSNKFQQI-PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI-PYELGLAQQLHHLNLVG 154 (183)
Q Consensus 77 ~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~-~~~~~~~~~L~~l~l~~ 154 (183)
++|++++|.+... +..+..+++|+.|++++|.+.+...+..+..+++|+.|++++|.++++ |..+..+++|+.|++++
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 9999999999865 456777999999999999997422278889999999999999999977 67789999999999999
Q ss_pred CcCCCCcHHHhhh
Q psy3781 155 NCFKYPRQDILQK 167 (183)
Q Consensus 155 n~~~~~~~~~~~~ 167 (183)
|.+++.++..+.+
T Consensus 504 n~l~~~~~~~~~~ 516 (570)
T 2z63_A 504 NQLKSVPDGIFDR 516 (570)
T ss_dssp SCCSCCCTTTTTT
T ss_pred CcCCCCCHHHhhc
Confidence 9999998876654
No 77
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=1.3e-18 Score=121.91 Aligned_cols=131 Identities=24% Similarity=0.335 Sum_probs=118.2
Q ss_pred CCccEEecCCCcceecccc-cccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCCeEeC
Q psy3781 6 AQVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNL 81 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l 81 (183)
++++.|++++|.+..+++. +..+++|+.|++++|+++.++.. |..+++|++|++++|.++.++... .+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 5799999999999987554 55899999999999999988865 678999999999999999988765 7899999999
Q ss_pred CCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccC
Q psy3781 82 SSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI 137 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~ 137 (183)
++|+++.+|..+..+++|+.|++++|.++.+. +..+..+++|+.+++++|.++.-
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIP-HGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECTTSCBCTT
T ss_pred cCCcccccCcccccCCCCCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCCCccCC
Confidence 99999999988889999999999999999886 57788899999999999998843
No 78
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=5.4e-19 Score=144.06 Aligned_cols=87 Identities=26% Similarity=0.415 Sum_probs=47.8
Q ss_pred CCCCccEEecCCCcceeccc--ccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCC-CCeE
Q psy3781 4 KEAQVEQADLSYNRLHVVNS--KLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGH-LREL 79 (183)
Q Consensus 4 ~~~~l~~l~l~~~~i~~l~~--~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~-L~~L 79 (183)
.+++|+.|++++|.+..+|. .+..+++|+.|++++|.++.+| .+..+++|+.|++++|.+..++..+ .+++ |++|
T Consensus 546 ~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L 624 (876)
T 4ecn_A 546 TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL 624 (876)
T ss_dssp TTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEE
T ss_pred ccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEE
Confidence 34455555555555555555 4555555555555555555555 4555555555555555555555444 4444 5555
Q ss_pred eCCCCCCCCcch
Q psy3781 80 NLSSNKFQQIPK 91 (183)
Q Consensus 80 ~l~~~~~~~~~~ 91 (183)
++++|.++.+|.
T Consensus 625 ~Ls~N~L~~lp~ 636 (876)
T 4ecn_A 625 GFSHNKLKYIPN 636 (876)
T ss_dssp ECCSSCCCSCCS
T ss_pred ECcCCCCCcCch
Confidence 555555554443
No 79
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=1.5e-19 Score=129.24 Aligned_cols=146 Identities=21% Similarity=0.393 Sum_probs=129.1
Q ss_pred CCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCC
Q psy3781 6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSN 84 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~ 84 (183)
.++..+++.++.+.+++ .+.++++|+.|++++|.++.++ .+..+++|++|++++|.++.+++ + .+++|++|++++|
T Consensus 19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS
T ss_pred HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC
Confidence 34556778888888777 4668999999999999999887 68889999999999999999887 6 8999999999999
Q ss_pred CCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCC
Q psy3781 85 KFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYP 160 (183)
Q Consensus 85 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~ 160 (183)
+++.++.... ++|+.|++++|.++++ ..+..+++|+.|++++|.+++++ .+..+++|+.|++++|.+.+.
T Consensus 96 ~l~~l~~~~~--~~L~~L~L~~N~l~~~---~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 96 RLKNLNGIPS--ACLSRLFLDNNELRDT---DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CCSCCTTCCC--SSCCEEECCSSCCSBS---GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred ccCCcCcccc--CcccEEEccCCccCCC---hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch
Confidence 9998866433 8999999999999986 35888999999999999999986 588999999999999999887
No 80
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.80 E-value=3.8e-19 Score=118.85 Aligned_cols=133 Identities=24% Similarity=0.267 Sum_probs=103.3
Q ss_pred CCCccEEEcCCCcCC--CCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCCCCC-cchhccCCCCCcEEE
Q psy3781 28 ITSIRELDLSHNLIQ--NLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQQ-IPKCIFHLDNLEILI 103 (183)
Q Consensus 28 ~~~l~~l~l~~~~l~--~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~l~ 103 (183)
.++++.|++++|.++ .+|..+..+++|++|++++|.++.+ ..+ .+++|++|++++|.++. ++..+..+++|+.|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 467888888888887 7777777788888888888888877 444 77888888888888886 555555578888888
Q ss_pred cCCCccccccCchhhhcCCCccEEeCCCCCCccCCh----hccccCcccEEeccCCcCCCCc
Q psy3781 104 LNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY----ELGLAQQLHHLNLVGNCFKYPR 161 (183)
Q Consensus 104 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~----~~~~~~~L~~l~l~~n~~~~~~ 161 (183)
+++|.++++.....+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+...+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 888888876423677788888888888888887776 5778888888888888776654
No 81
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.80 E-value=8.2e-19 Score=137.00 Aligned_cols=156 Identities=24% Similarity=0.320 Sum_probs=106.9
Q ss_pred CCCCccEEecCCCccee-cc---cccccCCCccEEEcCCCcCCCCCc---cccCCCCCceEEcCCCccccccCcc-ccCC
Q psy3781 4 KEAQVEQADLSYNRLHV-VN---SKLFDITSIRELDLSHNLIQNLPP---DLLNLRHLVYMNLENNKLETIDIDF-NFGH 75 (183)
Q Consensus 4 ~~~~l~~l~l~~~~i~~-l~---~~~~~~~~l~~l~l~~~~l~~l~~---~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~ 75 (183)
.+++|+.|++++|.+.. ++ ..+..+++|+.|++++|+++.++. .+..+++|++|++++|.++.++..+ .+++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~ 411 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK 411 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhccccc
Confidence 35566666666666653 22 123455666666666666665442 3555666667777666666666555 5566
Q ss_pred CCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCC
Q psy3781 76 LRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155 (183)
Q Consensus 76 L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n 155 (183)
|++|++++|.++.++..+. ++|+.|++++|.+++. + ..+++|++|++++|.++.+|. ...+++|+.|++++|
T Consensus 412 L~~L~Ls~N~l~~l~~~~~--~~L~~L~Ls~N~l~~~--~---~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 412 MRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSF--S---LFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRN 483 (549)
T ss_dssp CCEEECTTSCCSCCCTTSC--TTCSEEECCSSCCSCC--C---CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSS
T ss_pred ccEEECCCCCcccccchhc--CCceEEECCCCChhhh--c---ccCChhcEEECCCCccCcCCC-cccCccCCEEecCCC
Confidence 6777777766665554332 4677777777766654 2 467899999999999999987 567899999999999
Q ss_pred cCCCCcHHHhhh
Q psy3781 156 CFKYPRQDILQK 167 (183)
Q Consensus 156 ~~~~~~~~~~~~ 167 (183)
.+++.++..+..
T Consensus 484 ~l~~~~~~~~~~ 495 (549)
T 2z81_A 484 QLKSVPDGIFDR 495 (549)
T ss_dssp CCCCCCTTGGGG
T ss_pred ccCCcCHHHHhc
Confidence 999998876654
No 82
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=8.1e-19 Score=129.24 Aligned_cols=161 Identities=22% Similarity=0.308 Sum_probs=114.4
Q ss_pred CCccEEecCCCcceeccc-ccccCCCccEEEcCCCcCCCC-CccccCCCCCceEEcCCCccccccCccccCCCCeEeCCC
Q psy3781 6 AQVEQADLSYNRLHVVNS-KLFDITSIRELDLSHNLIQNL-PPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSS 83 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l~~-~~~~~~~l~~l~l~~~~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~ 83 (183)
++++.|++++|.+..+++ .+.++++|+.|++++|.++.+ +..+..+++|++|++++|.++.++.... ++|++|++++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~ 132 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-SSLVELRIHD 132 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC-TTCCEEECCS
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc-ccCCEEECCC
Confidence 467888888888887755 456788888888888888866 5567778888888888888887776554 6788888888
Q ss_pred CCCCCcch-hccCCCCCcEEEcCCCccccccC-chhhhcC--------------------CCccEEeCCCCCCccCC-hh
Q psy3781 84 NKFQQIPK-CIFHLDNLEILILNNNDIEEINQ-PEKLVKM--------------------QKLTVLDLSNNNIRKIP-YE 140 (183)
Q Consensus 84 ~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~--------------------~~L~~l~l~~n~l~~~~-~~ 140 (183)
|.++.++. .+..+++|+.|++++|.++..+. +..+..+ ++|+.|++++|.++.++ ..
T Consensus 133 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~ 212 (332)
T 2ft3_A 133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELED 212 (332)
T ss_dssp SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTS
T ss_pred CccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHH
Confidence 88887765 35668888888888888754210 2333332 34555666666666554 34
Q ss_pred ccccCcccEEeccCCcCCCCcHHHhhh
Q psy3781 141 LGLAQQLHHLNLVGNCFKYPRQDILQK 167 (183)
Q Consensus 141 ~~~~~~L~~l~l~~n~~~~~~~~~~~~ 167 (183)
+..+++|+.|++++|.+.+.++..+..
T Consensus 213 l~~l~~L~~L~L~~N~l~~~~~~~~~~ 239 (332)
T 2ft3_A 213 LLRYSKLYRLGLGHNQIRMIENGSLSF 239 (332)
T ss_dssp STTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred hcCCCCCCEEECCCCcCCcCChhHhhC
Confidence 667777778888888777777655544
No 83
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=1.9e-18 Score=132.64 Aligned_cols=151 Identities=28% Similarity=0.395 Sum_probs=73.2
Q ss_pred CCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCC
Q psy3781 4 KEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSS 83 (183)
Q Consensus 4 ~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~ 83 (183)
.+++|+.|++++|.+..++ .+..+++|+.|++++|.++.+++ +..+++|++|++++|.+..++....+++|++|++++
T Consensus 219 ~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~ 296 (466)
T 1o6v_A 219 ILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 296 (466)
T ss_dssp GCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred ccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCC
Confidence 3455666666666555442 23445555555555555554433 444555555555555555444422445555555555
Q ss_pred CCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCc
Q psy3781 84 NKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPR 161 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~ 161 (183)
|.++.++. +..+++|+.|++++|.+.+.. + +..+++|+.|++++|.+++++ .+..+++|+.|++++|.+.+..
T Consensus 297 n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~-~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 297 NQLEDISP-ISNLKNLTYLTLYFNNISDIS-P--VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp SCCSCCGG-GGGCTTCSEEECCSSCCSCCG-G--GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCG
T ss_pred CcccCchh-hcCCCCCCEEECcCCcCCCch-h--hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccc
Confidence 55554433 334445555555555544442 1 334444444444444444432 2344444444444444444433
No 84
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.80 E-value=5.9e-19 Score=117.89 Aligned_cols=135 Identities=22% Similarity=0.260 Sum_probs=119.3
Q ss_pred CCCCccEEecCCCcce--ecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccc-cCcc-ccCCCCeE
Q psy3781 4 KEAQVEQADLSYNRLH--VVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETI-DIDF-NFGHLREL 79 (183)
Q Consensus 4 ~~~~l~~l~l~~~~i~--~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~-~~~~-~~~~L~~L 79 (183)
..++++.|++++|.+. .+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+... +..+ .+++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 3478999999999998 8888878899999999999999988 7788899999999999999984 4444 69999999
Q ss_pred eCCCCCCCCcc--hhccCCCCCcEEEcCCCccccccCc---hhhhcCCCccEEeCCCCCCccCChh
Q psy3781 80 NLSSNKFQQIP--KCIFHLDNLEILILNNNDIEEINQP---EKLVKMQKLTVLDLSNNNIRKIPYE 140 (183)
Q Consensus 80 ~l~~~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~~~---~~~~~~~~L~~l~l~~n~l~~~~~~ 140 (183)
++++|.++.++ ..+..+++|+.|++++|.+++.. + ..+..+++|+.|++++|.++++|..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN-DYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST-THHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH-HHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 99999999876 57778999999999999999884 3 4788899999999999999988764
No 85
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.80 E-value=2.9e-18 Score=135.37 Aligned_cols=65 Identities=26% Similarity=0.358 Sum_probs=26.5
Q ss_pred CCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccC-ChhccccCcccEEeccCCcCCCCcH
Q psy3781 96 LDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI-PYELGLAQQLHHLNLVGNCFKYPRQ 162 (183)
Q Consensus 96 ~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~-~~~~~~~~~L~~l~l~~n~~~~~~~ 162 (183)
+++|+.|++++|.+++.. +..++.+++|+.|++++|.++.+ |..+..++.| .|++++|.+++.++
T Consensus 475 l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 475 LGRLEILVLSFCDLSSID-QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540 (606)
T ss_dssp CTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred CCCccEEECCCCccCccC-hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH
Confidence 344444444444444333 33344444444444444444422 2233444444 44444444444433
No 86
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=4.9e-19 Score=142.44 Aligned_cols=171 Identities=23% Similarity=0.312 Sum_probs=113.6
Q ss_pred CCccEEecCCCcceecccccccCCCccE-----EEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeE
Q psy3781 6 AQVEQADLSYNRLHVVNSKLFDITSIRE-----LDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLREL 79 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l~~~~~~~~~l~~-----l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L 79 (183)
+.++.+++.++.+...+..+.....|+. +++..+.+...+..+..++.|+.|++++|.+..++..+ .+++|++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL 252 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence 3467788888887776665554433333 33444555555666888999999999999999998877 89999999
Q ss_pred eCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCC
Q psy3781 80 NLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKY 159 (183)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~ 159 (183)
++++|.++.+|..+..+++|+.|++++|.++.+ +..++.+++|++|++++|.++.+|..+..+++|+.|++++|.+.+
T Consensus 253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l--p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL--PAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp BCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSC--CSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred EeeCCcCcccChhhhCCCCCCEEeCcCCcCCcc--ChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 999999999998888999999999999999976 788999999999999999999999999999999999999999999
Q ss_pred CcHHHhhhCh-HHHHHHHhh
Q psy3781 160 PRQDILQKGT-PFLLSYLRD 178 (183)
Q Consensus 160 ~~~~~~~~~~-~~~~~~l~~ 178 (183)
.++..+.... .....++++
T Consensus 331 ~~p~~~~~~~~~~~~l~l~~ 350 (727)
T 4b8c_D 331 QFLKILTEKSVTGLIFYLRD 350 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHhhcchhhhHHhhcc
Confidence 9988886653 333345554
No 87
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.79 E-value=2.2e-18 Score=137.76 Aligned_cols=161 Identities=27% Similarity=0.335 Sum_probs=135.4
Q ss_pred CCccEEecCCCcceecccc-cccCCCccEEEcCCCcCCCC-CccccCCCCCceEEcCCCccccccCc-c-ccCCCCeEeC
Q psy3781 6 AQVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNLIQNL-PPDLLNLRHLVYMNLENNKLETIDID-F-NFGHLRELNL 81 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~-~-~~~~L~~L~l 81 (183)
++++.|++++|.+..+++. +.++++|+.|++++|.++.+ +..+..+++|++|++++|.++.++.. + .+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 4789999999999987765 55789999999999999866 44577899999999999999988875 4 8889999999
Q ss_pred CCCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-c--cccCcccEEeccCCcC
Q psy3781 82 SSNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-L--GLAQQLHHLNLVGNCF 157 (183)
Q Consensus 82 ~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~--~~~~~L~~l~l~~n~~ 157 (183)
++|.++.+++ .+..+++|+.|++++|.+.+.. +..++.+++|++|++++|.++.++.. + ..+++|+.|++++|.+
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK-LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC-CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccC-chhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 9999988764 6778899999999999998876 67788899999999999999877654 3 3568899999999999
Q ss_pred CCCcHHHhhh
Q psy3781 158 KYPRQDILQK 167 (183)
Q Consensus 158 ~~~~~~~~~~ 167 (183)
.+.++..+..
T Consensus 184 ~~~~~~~~~~ 193 (680)
T 1ziw_A 184 KEFSPGCFHA 193 (680)
T ss_dssp CCBCTTGGGG
T ss_pred cccChhhhhh
Confidence 8888776654
No 88
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=8.1e-19 Score=128.54 Aligned_cols=158 Identities=25% Similarity=0.238 Sum_probs=121.1
Q ss_pred CCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCcc-----------------ccCCCCCceEEcCCCcc
Q psy3781 2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD-----------------LLNLRHLVYMNLENNKL 64 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~-----------------~~~~~~L~~L~l~~n~l 64 (183)
|..+++|+.|++++|.+..+++ +..+++|++|++++|.++.++.. ...+++|++|++++|.+
T Consensus 54 ~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l 132 (317)
T 3o53_A 54 LAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKI 132 (317)
T ss_dssp HTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCC
T ss_pred hhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCC
Confidence 5678999999999999997665 67889999999999987754321 12355677777777777
Q ss_pred ccccCcc--ccCCCCeEeCCCCCCCCcc-hhcc-CCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh
Q psy3781 65 ETIDIDF--NFGHLRELNLSSNKFQQIP-KCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE 140 (183)
Q Consensus 65 ~~~~~~~--~~~~L~~L~l~~~~~~~~~-~~~~-~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~ 140 (183)
+.+++.. .+++|++|++++|.++.++ ..+. .+++|+.|++++|.++++. ....+++|+.|++++|.++.++..
T Consensus 133 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~l~~L~~L~Ls~N~l~~l~~~ 209 (317)
T 3o53_A 133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK---GQVVFAKLKTLDLSSNKLAFMGPE 209 (317)
T ss_dssp CSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE---CCCCCTTCCEEECCSSCCCEECGG
T ss_pred CCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc---cccccccCCEEECCCCcCCcchhh
Confidence 7766543 6788888888888888653 3343 5788888888888887762 223478899999999999888888
Q ss_pred ccccCcccEEeccCCcCCCCcHH
Q psy3781 141 LGLAQQLHHLNLVGNCFKYPRQD 163 (183)
Q Consensus 141 ~~~~~~L~~l~l~~n~~~~~~~~ 163 (183)
+..+++|+.|++++|.+++.+..
T Consensus 210 ~~~l~~L~~L~L~~N~l~~l~~~ 232 (317)
T 3o53_A 210 FQSAAGVTWISLRNNKLVLIEKA 232 (317)
T ss_dssp GGGGTTCSEEECTTSCCCEECTT
T ss_pred hcccCcccEEECcCCcccchhhH
Confidence 88889999999999988865543
No 89
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.79 E-value=5.5e-18 Score=130.11 Aligned_cols=151 Identities=28% Similarity=0.379 Sum_probs=77.4
Q ss_pred CCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCC
Q psy3781 3 AKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLS 82 (183)
Q Consensus 3 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~ 82 (183)
..+++|+.|++++|.+..++. +..+++|+.|++++|.++.+++ +..+++|++|++++|.++.++....+++|++|+++
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 174 ANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 251 (466)
T ss_dssp TTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred ccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECC
Confidence 445666666666666665432 4455666666666665554433 33445555555555554444321144444444444
Q ss_pred CC----------------------CCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh
Q psy3781 83 SN----------------------KFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE 140 (183)
Q Consensus 83 ~~----------------------~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~ 140 (183)
+| .++.++. +..+++|+.|++++|.+++.. . +..+++|+.|++++|.+++++.
T Consensus 252 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~L~~n~l~~~~~- 326 (466)
T 1o6v_A 252 NNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDIS--P-ISNLKNLTYLTLYFNNISDISP- 326 (466)
T ss_dssp SSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCG--G-GGGCTTCSEEECCSSCCSCCGG-
T ss_pred CCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCch--h-hcCCCCCCEEECcCCcCCCchh-
Confidence 44 4444433 334445555555555554442 1 4445555555555555554433
Q ss_pred ccccCcccEEeccCCcCCCC
Q psy3781 141 LGLAQQLHHLNLVGNCFKYP 160 (183)
Q Consensus 141 ~~~~~~L~~l~l~~n~~~~~ 160 (183)
+..+++|+.|++++|.+.+.
T Consensus 327 ~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC
T ss_pred hccCccCCEeECCCCccCCc
Confidence 44555555566655555554
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=2.5e-19 Score=130.82 Aligned_cols=150 Identities=23% Similarity=0.244 Sum_probs=71.9
Q ss_pred CCCccEEecCCCcceeccc-ccccCCCccEEEcCCCcCCC---CCcc--ccCCCCCceEEcCCCccccccCc----c-cc
Q psy3781 5 EAQVEQADLSYNRLHVVNS-KLFDITSIRELDLSHNLIQN---LPPD--LLNLRHLVYMNLENNKLETIDID----F-NF 73 (183)
Q Consensus 5 ~~~l~~l~l~~~~i~~l~~-~~~~~~~l~~l~l~~~~l~~---l~~~--~~~~~~L~~L~l~~n~l~~~~~~----~-~~ 73 (183)
+++|+.|++++|.+..+++ .+..+++|++|++++|++.. ++.. +..+++|++|++++|.++.++.. + .+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 4455555555555554433 23345555555555555431 2111 23445555555555555443332 1 34
Q ss_pred CCCCeEeCCCCCCCCc-chhccCC---CCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccE
Q psy3781 74 GHLRELNLSSNKFQQI-PKCIFHL---DNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHH 149 (183)
Q Consensus 74 ~~L~~L~l~~~~~~~~-~~~~~~~---~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~ 149 (183)
++|++|++++|.++.. |..+..+ ++|+.|++++|.++.+ +..+. ++|+.|++++|.++.+|. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l--p~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV--PKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC--CSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch--hhhhc--CCCCEEECCCCcCCCCch-hhhCCCccE
Confidence 5555555555555543 3333332 3555555555555544 22221 455555555555555433 344555555
Q ss_pred EeccCCcCCC
Q psy3781 150 LNLVGNCFKY 159 (183)
Q Consensus 150 l~l~~n~~~~ 159 (183)
|++++|+++.
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 5555555544
No 91
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=2.2e-18 Score=120.06 Aligned_cols=129 Identities=24% Similarity=0.380 Sum_probs=116.3
Q ss_pred CCccEEecCCCcceecccc-cccCCCccEEEcCCCcCCCC-CccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeC
Q psy3781 6 AQVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNLIQNL-PPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNL 81 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l 81 (183)
++++.|++++|.+..+++. +..+++|+.|++++|.++.+ +..|.++++|++|++++|.++.++... .+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 4799999999999988875 55799999999999999976 567889999999999999999999875 7899999999
Q ss_pred CCCCCCCcc-hhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc
Q psy3781 82 SSNKFQQIP-KCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR 135 (183)
Q Consensus 82 ~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~ 135 (183)
++|.++.++ ..+..+++|+.|++++|.++.+. +..+..+++|+.+++++|.+.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEeCCCCcC
Confidence 999999885 46778999999999999999986 667888999999999999986
No 92
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.79 E-value=5.8e-18 Score=129.72 Aligned_cols=152 Identities=23% Similarity=0.286 Sum_probs=103.3
Q ss_pred CCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccC------------
Q psy3781 2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDI------------ 69 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~------------ 69 (183)
+..+++|+.|++++|.+..++ +..+++|++|++++|.++.++ +..+++|++|++++|.++.++.
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~ 156 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCH 156 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECT
T ss_pred cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceeccccCCcCCEEECC
Confidence 345667777777777777653 556677777777777776654 5566666666666666654421
Q ss_pred --------cc-ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh
Q psy3781 70 --------DF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE 140 (183)
Q Consensus 70 --------~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~ 140 (183)
.+ .+++|++|++++|+++.++ +..+++|+.|++++|.++++ .++.+++|+.|++++|.++++|
T Consensus 157 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~l~~ip-- 228 (457)
T 3bz5_A 157 LNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTEID-- 228 (457)
T ss_dssp TCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSCCC--
T ss_pred CCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCCcccccC--
Confidence 12 4456666666666666654 45566777777777777665 2566788888888888888876
Q ss_pred ccccCcccEEeccCCcCCCCcHHHh
Q psy3781 141 LGLAQQLHHLNLVGNCFKYPRQDIL 165 (183)
Q Consensus 141 ~~~~~~L~~l~l~~n~~~~~~~~~~ 165 (183)
+..+++|+.|++++|.+++.+...+
T Consensus 229 ~~~l~~L~~L~l~~N~l~~~~~~~l 253 (457)
T 3bz5_A 229 VTPLTQLTYFDCSVNPLTELDVSTL 253 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCCCTTC
T ss_pred ccccCCCCEEEeeCCcCCCcCHHHC
Confidence 6778888888888888887765433
No 93
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=1.5e-18 Score=134.83 Aligned_cols=153 Identities=27% Similarity=0.267 Sum_probs=130.0
Q ss_pred cEEecCCCcceecccccccCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCccccccC-cc-ccCCCCeEeCCCCC
Q psy3781 9 EQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDI-DF-NFGHLRELNLSSNK 85 (183)
Q Consensus 9 ~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~-~~-~~~~L~~L~l~~~~ 85 (183)
+.+++++|.++.+|..+. ++++.|++++|.++.+++ .|..+++|++|++++|.++.+.+ .+ .+++|++|++++|+
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 578999999999998775 899999999999997764 68889999999999999998855 44 88999999999999
Q ss_pred CCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcc--cEEeccCCcC--CCCc
Q psy3781 86 FQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQL--HHLNLVGNCF--KYPR 161 (183)
Q Consensus 86 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L--~~l~l~~n~~--~~~~ 161 (183)
++.+|.. .+++|++|++++|.++++..+..++.+++|++|++++|.++. ..+..+++| +.+++++|.+ .+..
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~ 156 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKED 156 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCC
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccc
Confidence 9988776 789999999999999886546889999999999999999886 346777778 9999999988 6665
Q ss_pred HHHhhh
Q psy3781 162 QDILQK 167 (183)
Q Consensus 162 ~~~~~~ 167 (183)
+..+..
T Consensus 157 ~~~l~~ 162 (520)
T 2z7x_B 157 PEGLQD 162 (520)
T ss_dssp TTTTTT
T ss_pred cccccc
Confidence 555544
No 94
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.78 E-value=1.7e-18 Score=113.44 Aligned_cols=126 Identities=25% Similarity=0.310 Sum_probs=101.8
Q ss_pred CCCccEEEcCCCcCC--CCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCCCCC-cchhccCCCCCcEEE
Q psy3781 28 ITSIRELDLSHNLIQ--NLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQQ-IPKCIFHLDNLEILI 103 (183)
Q Consensus 28 ~~~l~~l~l~~~~l~--~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~l~ 103 (183)
.++++.+++++|.++ .+|..+..+++|++|++++|.++.+ ..+ .+++|++|++++|.++. ++..+..+++|+.|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 467888888888887 7777777888888888888888877 444 78888899999988887 666666688899999
Q ss_pred cCCCccccccCchhhhcCCCccEEeCCCCCCccCCh----hccccCcccEEeccC
Q psy3781 104 LNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY----ELGLAQQLHHLNLVG 154 (183)
Q Consensus 104 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~----~~~~~~~L~~l~l~~ 154 (183)
+++|.+++...+..++.+++|+++++++|.+++++. .+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999998886324778888999999999999888776 578888999888763
No 95
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.77 E-value=3.3e-18 Score=134.16 Aligned_cols=157 Identities=27% Similarity=0.322 Sum_probs=131.7
Q ss_pred CCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCccccccCcc--ccCCCCeEeC
Q psy3781 5 EAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNL 81 (183)
Q Consensus 5 ~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l 81 (183)
+...+.++++++.++.+|..+. ++++.|++++|.++.+++ .|..+++|++|++++|.++.+++.. .+++|++|++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 3445789999999999998774 799999999999998874 6889999999999999999886654 8899999999
Q ss_pred CCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcc--cEEeccCCcC--
Q psy3781 82 SSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQL--HHLNLVGNCF-- 157 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L--~~l~l~~n~~-- 157 (183)
++|.++.+|.. .+++|+.|++++|.++++..+..++.+++|++|++++|.++.. .+..++++ +.+++++|.+
T Consensus 108 s~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 108 SHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp TTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCC
T ss_pred CCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccc
Confidence 99999988776 7899999999999999875457899999999999999998863 34555666 9999999988
Q ss_pred CCCcHHHhhh
Q psy3781 158 KYPRQDILQK 167 (183)
Q Consensus 158 ~~~~~~~~~~ 167 (183)
.+..+..+..
T Consensus 184 ~~~~~~~l~~ 193 (562)
T 3a79_B 184 KGGETESLQI 193 (562)
T ss_dssp CSSSCCEEEE
T ss_pred cccCcccccc
Confidence 6665555443
No 96
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.77 E-value=1.5e-17 Score=127.38 Aligned_cols=101 Identities=23% Similarity=0.294 Sum_probs=56.5
Q ss_pred CCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCC
Q psy3781 4 KEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLS 82 (183)
Q Consensus 4 ~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~ 82 (183)
++++|+.|++++|.+..+| .+..+++|+.|++++|.++.++ +..+++|++|++++|.++.++ + .+++|++|+++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCD 114 (457)
T ss_dssp HHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECC
T ss_pred HcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECC
Confidence 3556666666666666554 4555666666666666666553 455556666666666555543 3 45555555555
Q ss_pred CCCCCCcchhccCCCCCcEEEcCCCcccc
Q psy3781 83 SNKFQQIPKCIFHLDNLEILILNNNDIEE 111 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 111 (183)
+|.++.++ +..+++|+.|++++|.+++
T Consensus 115 ~N~l~~l~--~~~l~~L~~L~l~~N~l~~ 141 (457)
T 3bz5_A 115 TNKLTKLD--VSQNPLLTYLNCARNTLTE 141 (457)
T ss_dssp SSCCSCCC--CTTCTTCCEEECTTSCCSC
T ss_pred CCcCCeec--CCCCCcCCEEECCCCccce
Confidence 55555442 3344555555555554443
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=6.7e-18 Score=117.57 Aligned_cols=129 Identities=20% Similarity=0.366 Sum_probs=115.3
Q ss_pred CCccEEecCCCcceeccc-c-cccCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCccccccCcc--ccCCCCeEe
Q psy3781 6 AQVEQADLSYNRLHVVNS-K-LFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELN 80 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l~~-~-~~~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~ 80 (183)
..++.|++++|.+..+++ . +..+++|+.|++++|.++.+++ .|..+++|++|++++|.++.++... .+++|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 357899999999998743 3 5589999999999999998776 5888999999999999999988864 889999999
Q ss_pred CCCCCCCCc-chhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc
Q psy3781 81 LSSNKFQQI-PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR 135 (183)
Q Consensus 81 l~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~ 135 (183)
+++|+++.+ +..+..+++|+.|++++|.++++. +..+..+++|+.+++++|.++
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSCCEE
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCcCCc
Confidence 999999988 456778999999999999999987 788999999999999999987
No 98
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=1.7e-18 Score=133.65 Aligned_cols=157 Identities=23% Similarity=0.244 Sum_probs=120.4
Q ss_pred CCCCccEEecCCCcceeccc-ccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCc------------
Q psy3781 4 KEAQVEQADLSYNRLHVVNS-KLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID------------ 70 (183)
Q Consensus 4 ~~~~l~~l~l~~~~i~~l~~-~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~------------ 70 (183)
.+++|+.|++++|.+..+++ .+..+++|+.|++++|.++..++ +..+++|++|++++|.++.++..
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~ 110 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN 110 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCc
Confidence 34578888888888887654 45578888888888888875554 67777888888888777654421
Q ss_pred ------cccCCCCeEeCCCCCCCCcc-hhccCCCCCcEEEcCCCccccccCchhhh-cCCCccEEeCCCCCCccCChhcc
Q psy3781 71 ------FNFGHLRELNLSSNKFQQIP-KCIFHLDNLEILILNNNDIEEINQPEKLV-KMQKLTVLDLSNNNIRKIPYELG 142 (183)
Q Consensus 71 ------~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~-~~~~L~~l~l~~n~l~~~~~~~~ 142 (183)
..+++|++|++++|.++.++ ..+..+++|+.|++++|.+++.. +..+. .++.|+.|++++|.++.++. ..
T Consensus 111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~ 188 (487)
T 3oja_A 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-FAELAASSDTLEHLNLQYNFIYDVKG-QV 188 (487)
T ss_dssp CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE-GGGGGGGTTTCCEEECTTSCCCEEEC-CC
T ss_pred CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC-hHHHhhhCCcccEEecCCCccccccc-cc
Confidence 03567788888888888764 35667888999999999998875 55554 68899999999999887754 34
Q ss_pred ccCcccEEeccCCcCCCCcHH
Q psy3781 143 LAQQLHHLNLVGNCFKYPRQD 163 (183)
Q Consensus 143 ~~~~L~~l~l~~n~~~~~~~~ 163 (183)
.+++|+.|++++|.+++.++.
T Consensus 189 ~l~~L~~L~Ls~N~l~~~~~~ 209 (487)
T 3oja_A 189 VFAKLKTLDLSSNKLAFMGPE 209 (487)
T ss_dssp CCTTCCEEECCSSCCCEECGG
T ss_pred cCCCCCEEECCCCCCCCCCHh
Confidence 688999999999999988776
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=1.3e-17 Score=130.55 Aligned_cols=139 Identities=24% Similarity=0.317 Sum_probs=74.2
Q ss_pred ccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCCCCC
Q psy3781 8 VEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQ 87 (183)
Q Consensus 8 l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~~~ 87 (183)
|+.|++++|.++.+| ..+++|+.|++++|.++.+|. +.. +|++|++++|.++.++. .+++|+.|++++|.++
T Consensus 82 L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 82 ITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLT 153 (571)
T ss_dssp CSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCS
T ss_pred CCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCccC
Confidence 444444444444444 123444455555554444444 322 55555555555555444 3455566666666655
Q ss_pred CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcc-------cEEeccCCcCCCC
Q psy3781 88 QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQL-------HHLNLVGNCFKYP 160 (183)
Q Consensus 88 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L-------~~l~l~~n~~~~~ 160 (183)
.+|. .+++|+.|++++|.+++++ . +. ++|+.|++++|.++.+|. +.. +| +.|++++|.++.+
T Consensus 154 ~lp~---~l~~L~~L~Ls~N~L~~lp--~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~l 222 (571)
T 3cvr_A 154 MLPE---LPTSLEVLSVRNNQLTFLP--E-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHI 222 (571)
T ss_dssp CCCC---CCTTCCEEECCSSCCSCCC--C-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCC
T ss_pred cCCC---cCCCcCEEECCCCCCCCcc--h-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceec
Confidence 5544 3456666666666666652 3 33 667777777777766665 433 55 7777777777766
Q ss_pred cHHHh
Q psy3781 161 RQDIL 165 (183)
Q Consensus 161 ~~~~~ 165 (183)
+..++
T Consensus 223 p~~l~ 227 (571)
T 3cvr_A 223 PENIL 227 (571)
T ss_dssp CGGGG
T ss_pred CHHHh
Confidence 65443
No 100
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=1.1e-17 Score=114.18 Aligned_cols=125 Identities=28% Similarity=0.445 Sum_probs=56.5
Q ss_pred EEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCc--c-ccCCCCeEeCCCCCCCCc-chhccCCCCCcEEEcCCCc
Q psy3781 33 ELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID--F-NFGHLRELNLSSNKFQQI-PKCIFHLDNLEILILNNND 108 (183)
Q Consensus 33 ~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~--~-~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~n~ 108 (183)
.++++++.++.+|..+.. ++++|++++|.++.++.. + .+++|++|++++|.++.+ +..+..+++|+.|++++|.
T Consensus 12 ~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp EEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 344444444444433321 444444444444444332 2 444444444444444443 2233444455555555555
Q ss_pred cccccCchhhhcCCCccEEeCCCCCCccC-ChhccccCcccEEeccCCcCCCC
Q psy3781 109 IEEINQPEKLVKMQKLTVLDLSNNNIRKI-PYELGLAQQLHHLNLVGNCFKYP 160 (183)
Q Consensus 109 ~~~~~~~~~~~~~~~L~~l~l~~n~l~~~-~~~~~~~~~L~~l~l~~n~~~~~ 160 (183)
++++. +..+..+++|++|++++|.++.+ |..+..+++|++|++++|++.+.
T Consensus 90 l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 90 IKEIS-NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCEEC-SSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCccC-HHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 54443 33344455555555555555433 33344455555555555555443
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=3.7e-18 Score=116.89 Aligned_cols=133 Identities=17% Similarity=0.198 Sum_probs=118.2
Q ss_pred ccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCCCCCC-cchhccCCCCCcEEEc
Q psy3781 26 FDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQ-IPKCIFHLDNLEILIL 104 (183)
Q Consensus 26 ~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~l~l 104 (183)
.++++++.+++++|.++.++ .+..+++|++|++++|.+..++....+++|++|++++|.++. .+..+..+++|+.|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 35679999999999999888 688899999999999988877643388999999999999985 4667788999999999
Q ss_pred CCCccccccCchhhhcCCCccEEeCCCCC-CccCChhccccCcccEEeccCCcCCCCc
Q psy3781 105 NNNDIEEINQPEKLVKMQKLTVLDLSNNN-IRKIPYELGLAQQLHHLNLVGNCFKYPR 161 (183)
Q Consensus 105 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~-l~~~~~~~~~~~~L~~l~l~~n~~~~~~ 161 (183)
++|.+++.. +..++.+++|+.|++++|. +++++ .+..+++|+.|++++|.+++.+
T Consensus 120 s~n~i~~~~-~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 120 SHSAHDDSI-LTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp CSSBCBGGG-HHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT
T ss_pred cCCccCcHh-HHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH
Confidence 999999865 7888999999999999998 88887 6899999999999999998865
No 102
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=2.7e-18 Score=117.19 Aligned_cols=125 Identities=28% Similarity=0.410 Sum_probs=111.8
Q ss_pred ccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCcc--ccCCCCCceEEcCCCccccccCc-c-ccCCCCeEeCCC
Q psy3781 8 VEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD--LLNLRHLVYMNLENNKLETIDID-F-NFGHLRELNLSS 83 (183)
Q Consensus 8 l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~--~~~~~~L~~L~l~~n~l~~~~~~-~-~~~~L~~L~l~~ 83 (183)
-+.++++++.++.+|..+.. +++.|++++|.++.++.. +..+++|++|++++|.++.+.+. + .+++|++|++++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 47899999999999987754 999999999999988764 88899999999999999988654 4 889999999999
Q ss_pred CCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc
Q psy3781 84 NKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR 135 (183)
Q Consensus 84 ~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~ 135 (183)
|+++.++. .+..+++|+.|++++|.+++.. +..+..+++|+++++++|.++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeC-HHHhhcCCCCCEEEeCCCCcc
Confidence 99998865 4667999999999999999986 788899999999999999988
No 103
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=2.4e-17 Score=130.31 Aligned_cols=86 Identities=22% Similarity=0.313 Sum_probs=68.8
Q ss_pred CCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEecc
Q psy3781 74 GHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLV 153 (183)
Q Consensus 74 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~ 153 (183)
++|++|++++|.++.+| ..+++|+.|++++|.++.+. . .+++|+.|++++|.++.+|..+..+++|+.|+++
T Consensus 221 ~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp--~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLP--M---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCC--C---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECC
T ss_pred CCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCC--c---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEec
Confidence 55677777777777665 23467888888888888763 3 5688999999999999999999999999999999
Q ss_pred CCcCCCCcHHHhhh
Q psy3781 154 GNCFKYPRQDILQK 167 (183)
Q Consensus 154 ~n~~~~~~~~~~~~ 167 (183)
+|++.+..+..+.+
T Consensus 293 ~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 293 GNPLSERTLQALRE 306 (622)
T ss_dssp SCCCCHHHHHHHHH
T ss_pred CCCCCCcCHHHHHh
Confidence 99999887776553
No 104
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.76 E-value=4.7e-18 Score=114.40 Aligned_cols=134 Identities=22% Similarity=0.253 Sum_probs=106.7
Q ss_pred cccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCCCCCcchhc-cCCCCCcEE
Q psy3781 25 LFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQQIPKCI-FHLDNLEIL 102 (183)
Q Consensus 25 ~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~l 102 (183)
+.++.+++.|++++|+++.++......++|++|++++|.++.+ ..+ .+++|++|++++|.++.+++.+ ..+++|+.|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 3457788899999998887754333344899999999998887 444 8888999999999998887654 678899999
Q ss_pred EcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh----ccccCcccEEeccCCcCCC
Q psy3781 103 ILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE----LGLAQQLHHLNLVGNCFKY 159 (183)
Q Consensus 103 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~----~~~~~~L~~l~l~~n~~~~ 159 (183)
++++|.+.++.....+..+++|+.+++++|.++.+|.. +..+++|+.+++++|...+
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99999998774123778889999999999999988875 7889999999999887544
No 105
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.76 E-value=1.7e-17 Score=113.30 Aligned_cols=124 Identities=27% Similarity=0.386 Sum_probs=85.2
Q ss_pred cEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCC
Q psy3781 9 EQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKF 86 (183)
Q Consensus 9 ~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~ 86 (183)
+.++++++.+..+|..+. ++++.|++++|.++.+|..|..+++|++|++++|.++.++... .+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 567777777777776553 4677777777777777766777777777777777777666543 667777777777777
Q ss_pred CCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc
Q psy3781 87 QQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR 135 (183)
Q Consensus 87 ~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~ 135 (183)
+.+++ .+..+++|+.|++++|.++.+. +..+..+++|+.+++++|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVP-EGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeC-hhhhhcCccccEEEeCCCCee
Confidence 76644 4555677777777777777664 445666677777777777664
No 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.76 E-value=7.8e-18 Score=110.27 Aligned_cols=126 Identities=21% Similarity=0.297 Sum_probs=110.8
Q ss_pred CCCCccEEecCCCcce--ecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCcccc-ccCcc-ccCCCCeE
Q psy3781 4 KEAQVEQADLSYNRLH--VVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLET-IDIDF-NFGHLREL 79 (183)
Q Consensus 4 ~~~~l~~l~l~~~~i~--~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~-~~~~~-~~~~L~~L 79 (183)
..++++.|++++|.+. .++..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++. ++..+ .+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 3568999999999999 7888778899999999999999988 778889999999999999998 55545 69999999
Q ss_pred eCCCCCCCCcc--hhccCCCCCcEEEcCCCccccccCc---hhhhcCCCccEEeCCC
Q psy3781 80 NLSSNKFQQIP--KCIFHLDNLEILILNNNDIEEINQP---EKLVKMQKLTVLDLSN 131 (183)
Q Consensus 80 ~l~~~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~~~---~~~~~~~~L~~l~l~~ 131 (183)
++++|.++.++ ..+..+++|+.|++++|.+++.. + ..+..+++|+.+++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN-DYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST-THHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH-HHHHHHHHHCCCcccccCCC
Confidence 99999999875 67788999999999999999885 3 4788899999998763
No 107
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.75 E-value=2.9e-17 Score=112.17 Aligned_cols=127 Identities=23% Similarity=0.378 Sum_probs=114.4
Q ss_pred cEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCCCCCcch-hccCCCCCcEEEcCCCcc
Q psy3781 32 RELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQQIPK-CIFHLDNLEILILNNNDI 109 (183)
Q Consensus 32 ~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~n~~ 109 (183)
+.++++++.++.+|..+. +++++|++++|.++.++..+ .+++|++|++++|.++.++. .+..+++|+.|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 678999999999987663 68999999999999998766 89999999999999998865 577899999999999999
Q ss_pred ccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCcCCCCc
Q psy3781 110 EEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYPR 161 (183)
Q Consensus 110 ~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~~~~~ 161 (183)
+.+. +..+..+++|+.|++++|.++.++.. +..+++|+.+++++|++...-
T Consensus 91 ~~i~-~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 91 RCIP-PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CBCC-TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred CEeC-HHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 9987 67899999999999999999999875 788999999999999998754
No 108
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.75 E-value=7.7e-18 Score=113.33 Aligned_cols=130 Identities=22% Similarity=0.323 Sum_probs=114.2
Q ss_pred CCCCCccEEecCCCcceecccccccC-CCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc--ccCCCCeE
Q psy3781 3 AKEAQVEQADLSYNRLHVVNSKLFDI-TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLREL 79 (183)
Q Consensus 3 ~~~~~l~~l~l~~~~i~~l~~~~~~~-~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L 79 (183)
..+.+++.|++++|.+..++. +..+ ++|+.|++++|.++.+ ..+..+++|++|++++|.++.+++.. .+++|++|
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 457889999999999998854 4544 4999999999999987 67888999999999999999988765 88999999
Q ss_pred eCCCCCCCCcch--hccCCCCCcEEEcCCCccccccCch----hhhcCCCccEEeCCCCCCcc
Q psy3781 80 NLSSNKFQQIPK--CIFHLDNLEILILNNNDIEEINQPE----KLVKMQKLTVLDLSNNNIRK 136 (183)
Q Consensus 80 ~l~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~----~~~~~~~L~~l~l~~n~l~~ 136 (183)
++++|.++.++. .+..+++|+.+++++|.+... +. .+..+++|+.+++++|...+
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~--~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK--KHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS--TTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCc--HhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999998876 677899999999999999877 44 48889999999999998764
No 109
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.75 E-value=8.3e-17 Score=108.31 Aligned_cols=128 Identities=23% Similarity=0.377 Sum_probs=77.2
Q ss_pred cEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCCCcchh-ccCCCCCcEEEcCCCc
Q psy3781 32 RELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQIPKC-IFHLDNLEILILNNND 108 (183)
Q Consensus 32 ~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~n~ 108 (183)
+.+++++++++.+|..+. +++++|++++|.++.++... .+++|++|++++|.++.++.. +..+++|+.|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 445555555555554332 45566666666655555433 455666666666666655443 3456667777777776
Q ss_pred cccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCcCCCCcH
Q psy3781 109 IEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYPRQ 162 (183)
Q Consensus 109 ~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~~~~~~ 162 (183)
++++. +..+..+++|++|++++|.++.++.. +..+++|+.+++++|++.+..+
T Consensus 88 l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 88 LQSLP-NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccC-HHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 66654 44456666777777777777766654 4566677777777777766554
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=6.9e-19 Score=137.94 Aligned_cols=157 Identities=22% Similarity=0.306 Sum_probs=133.1
Q ss_pred CCCCCccEEecCCCcceecccccccCCCccEEEcCCCc-------------CC-CCCcc---------------------
Q psy3781 3 AKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNL-------------IQ-NLPPD--------------------- 47 (183)
Q Consensus 3 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~-------------l~-~l~~~--------------------- 47 (183)
..++.++.|++++|.+..+|..+..+.+|+.|++++|. .. ..|..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 45778899999999999999999888899988886653 11 11111
Q ss_pred ---------ccC--CCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCc
Q psy3781 48 ---------LLN--LRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQP 115 (183)
Q Consensus 48 ---------~~~--~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 115 (183)
+.. ...|+.|++++|.++.+|. + .+++|+.|++++|.++.+|..+..+++|+.|++++|.++++ +
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l--p 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV--D 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC--G
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCC--c
Confidence 111 1258899999999999987 6 89999999999999999999999999999999999999986 5
Q ss_pred hhhhcCCCccEEeCCCCCCccC--ChhccccCcccEEeccCCcCCCCcHH
Q psy3781 116 EKLVKMQKLTVLDLSNNNIRKI--PYELGLAQQLHHLNLVGNCFKYPRQD 163 (183)
Q Consensus 116 ~~~~~~~~L~~l~l~~n~l~~~--~~~~~~~~~L~~l~l~~n~~~~~~~~ 163 (183)
.++.+++|+.|++++|.++.+ |..+..+++|+.|++++|++++.++.
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 789999999999999999988 88899999999999999999888653
No 111
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.73 E-value=3.4e-17 Score=133.88 Aligned_cols=131 Identities=25% Similarity=0.303 Sum_probs=88.6
Q ss_pred CCccEEecCCCcceec-ccccccCCCccEEEcCCCcC-CCC-CccccCCCCCceEEcCCCccccccCc-c-ccCCCCeEe
Q psy3781 6 AQVEQADLSYNRLHVV-NSKLFDITSIRELDLSHNLI-QNL-PPDLLNLRHLVYMNLENNKLETIDID-F-NFGHLRELN 80 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l-~~~~~~~~~l~~l~l~~~~l-~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~-~-~~~~L~~L~ 80 (183)
++++.|++++|.+..+ +..+.++++|+.|++++|.. ..+ +..|..+++|++|++++|.+..+.+. + .+++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 4677777777777755 34455677777777777743 344 44567777777777777777766443 3 677777777
Q ss_pred CCCCCCCC-cchh--ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCcc
Q psy3781 81 LSSNKFQQ-IPKC--IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRK 136 (183)
Q Consensus 81 l~~~~~~~-~~~~--~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~ 136 (183)
+++|.++. ++.. +..+++|+.|++++|.+.+...+..++.+++|++|++++|.++.
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 77777764 3332 55677777777777777766533567777777777777777664
No 112
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.73 E-value=4.8e-17 Score=132.99 Aligned_cols=165 Identities=21% Similarity=0.301 Sum_probs=136.2
Q ss_pred CCCCCCccEEecCCC-cceec-ccccccCCCccEEEcCCCcCCCC-CccccCCCCCceEEcCCCcccc-ccCc--c-ccC
Q psy3781 2 IAKEAQVEQADLSYN-RLHVV-NSKLFDITSIRELDLSHNLIQNL-PPDLLNLRHLVYMNLENNKLET-IDID--F-NFG 74 (183)
Q Consensus 2 l~~~~~l~~l~l~~~-~i~~l-~~~~~~~~~l~~l~l~~~~l~~l-~~~~~~~~~L~~L~l~~n~l~~-~~~~--~-~~~ 74 (183)
|..+++|+.|++++| .+..+ +..+.++++|+.|++++|.++.+ |..|.++++|++|++++|.+.. ++.. + .++
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 678999999999999 44567 45566899999999999999966 6779999999999999999985 3333 4 889
Q ss_pred CCCeEeCCCCCCCCcc--hhccCCCCCcEEEcCCCccccccCchhhhcC--CCccEEeCCCCCCcc-CChhccccCc---
Q psy3781 75 HLRELNLSSNKFQQIP--KCIFHLDNLEILILNNNDIEEINQPEKLVKM--QKLTVLDLSNNNIRK-IPYELGLAQQ--- 146 (183)
Q Consensus 75 ~L~~L~l~~~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~--~~L~~l~l~~n~l~~-~~~~~~~~~~--- 146 (183)
+|++|++++|.++.++ ..+..+++|+.|++++|.+++.. +..++.+ ++|+.+++++|.++. .+..+..+++
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~-~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 202 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC-EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC-SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTT
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC-HHHcccccCCccceEECCCCccccccccchhhcCCccc
Confidence 9999999999998663 46788999999999999998876 6777766 899999999999884 4555555554
Q ss_pred ---ccEEeccCCcCCCCcHHHhhh
Q psy3781 147 ---LHHLNLVGNCFKYPRQDILQK 167 (183)
Q Consensus 147 ---L~~l~l~~n~~~~~~~~~~~~ 167 (183)
|+.|++++|.+.+..+..+.+
T Consensus 203 ~~~L~~L~Ls~n~l~~~~~~~~~~ 226 (844)
T 3j0a_A 203 NMVLEILDVSGNGWTVDITGNFSN 226 (844)
T ss_dssp TCCBSEEBCSSCCSSTTTTSGGGG
T ss_pred cCceeEEecCCCcCchhHHHHHHh
Confidence 999999999888776655543
No 113
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.73 E-value=1.6e-16 Score=121.63 Aligned_cols=78 Identities=23% Similarity=0.378 Sum_probs=35.9
Q ss_pred CccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCcc
Q psy3781 30 SIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDI 109 (183)
Q Consensus 30 ~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 109 (183)
+|++|++++|.++.+| .+..+++|++|++++|.++.++.. ..+|++|++++|.++.++ .+..+++|+.|++++|.+
T Consensus 132 ~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSL 207 (454)
T ss_dssp TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC
T ss_pred CCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcC
Confidence 4445555555544444 344455555555555554443322 124444444444444443 233444444444444444
Q ss_pred cc
Q psy3781 110 EE 111 (183)
Q Consensus 110 ~~ 111 (183)
++
T Consensus 208 ~~ 209 (454)
T 1jl5_A 208 KK 209 (454)
T ss_dssp SS
T ss_pred Cc
Confidence 43
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=1.3e-18 Score=139.93 Aligned_cols=143 Identities=21% Similarity=0.265 Sum_probs=104.9
Q ss_pred ceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCCCCCcchhccCC
Q psy3781 18 LHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQQIPKCIFHL 96 (183)
Q Consensus 18 i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~ 96 (183)
+...+..+..+..|+.|++++|.+..++..+..+++|++|++++|.++.++..+ .+++|++|++++|.++.+|..+..+
T Consensus 213 ~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l 292 (727)
T 4b8c_D 213 MVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSC 292 (727)
T ss_dssp ---------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGG
T ss_pred eecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCC
Confidence 333344555788899999999999988888888899999999999999888777 8889999999999999888888888
Q ss_pred CCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccC-ChhccccC-cccEEeccCCcCCCCcH
Q psy3781 97 DNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI-PYELGLAQ-QLHHLNLVGNCFKYPRQ 162 (183)
Q Consensus 97 ~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~-~~~~~~~~-~L~~l~l~~n~~~~~~~ 162 (183)
++|+.|++++|.++.+ +..++.+++|+.|++++|.++.. |..+.... ....+++++|.+.+..+
T Consensus 293 ~~L~~L~L~~N~l~~l--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTL--PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp TTCSEEECCSSCCCCC--CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCCCEEECCCCCCCcc--ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 9999999999999877 66688899999999999998843 33332221 11124445554444443
No 115
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.73 E-value=1.8e-16 Score=121.41 Aligned_cols=140 Identities=25% Similarity=0.395 Sum_probs=90.9
Q ss_pred CCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCC
Q psy3781 6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSN 84 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~ 84 (183)
++|++|++++|.+..+| .+.++++|+++++++|+++.+|..+ .+|++|++++|.++.++ .+ .+++|++|++++|
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCC
Confidence 47788888888887776 4667888888888888887766543 47777777777777766 34 6677777777777
Q ss_pred CCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCC
Q psy3781 85 KFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKY 159 (183)
Q Consensus 85 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~ 159 (183)
.++.++... ++|+.|++++|.++.+ + .++.+++|+++++++|.++.+|.. +++|+.|++++|.+.+
T Consensus 206 ~l~~l~~~~---~~L~~L~l~~n~l~~l--p-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 206 SLKKLPDLP---LSLESIVAGNNILEEL--P-ELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD 271 (454)
T ss_dssp CCSSCCCCC---TTCCEEECCSSCCSSC--C-CCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC
T ss_pred cCCcCCCCc---CcccEEECcCCcCCcc--c-ccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc
Confidence 766654422 3566666666666644 3 255666666666666666655532 2444555555554444
No 116
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.73 E-value=4.3e-18 Score=126.81 Aligned_cols=159 Identities=25% Similarity=0.359 Sum_probs=86.8
Q ss_pred CccEEecCCCcceec-ccccccC-----CCccEEEcCCCcCCCCCcc-----ccCC-CCCceEEcCCCccccccCcc---
Q psy3781 7 QVEQADLSYNRLHVV-NSKLFDI-----TSIRELDLSHNLIQNLPPD-----LLNL-RHLVYMNLENNKLETIDIDF--- 71 (183)
Q Consensus 7 ~l~~l~l~~~~i~~l-~~~~~~~-----~~l~~l~l~~~~l~~l~~~-----~~~~-~~L~~L~l~~n~l~~~~~~~--- 71 (183)
+|+.|++++|.++.. +..+..+ ++|++|++++|.++..... +..+ ++|++|++++|.++..+...
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 555555555555532 2222222 5556666666655533222 2333 56666666666665444322
Q ss_pred ---c-cCCCCeEeCCCCCCC-----CcchhccCCC-CCcEEEcCCCccccccCchhh----hcC-CCccEEeCCCCCCcc
Q psy3781 72 ---N-FGHLRELNLSSNKFQ-----QIPKCIFHLD-NLEILILNNNDIEEINQPEKL----VKM-QKLTVLDLSNNNIRK 136 (183)
Q Consensus 72 ---~-~~~L~~L~l~~~~~~-----~~~~~~~~~~-~L~~l~l~~n~~~~~~~~~~~----~~~-~~L~~l~l~~n~l~~ 136 (183)
. ..+|++|++++|.++ .++..+...+ +|+.|++++|.+++.+ +..+ ... ++|+.|++++|.+++
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN-CAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC-HHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh-HHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 1 246666666666666 2223333333 6777777777776654 3322 233 477777777777765
Q ss_pred -----CChhccc-cCcccEEeccCCcCCCCcHHHhh
Q psy3781 137 -----IPYELGL-AQQLHHLNLVGNCFKYPRQDILQ 166 (183)
Q Consensus 137 -----~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~ 166 (183)
++..+.. .++|+.|++++|.+++.+.+.+.
T Consensus 211 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 246 (362)
T 3goz_A 211 KSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK 246 (362)
T ss_dssp SCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH
T ss_pred hHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH
Confidence 4444444 34777777777777777664433
No 117
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=3.3e-18 Score=128.38 Aligned_cols=159 Identities=23% Similarity=0.209 Sum_probs=87.0
Q ss_pred CCCCCCccEEecCCCcce----eccccc-------ccCCCccEEEcCCCcCCC-----CCccccCCCCCceEEcCCCccc
Q psy3781 2 IAKEAQVEQADLSYNRLH----VVNSKL-------FDITSIRELDLSHNLIQN-----LPPDLLNLRHLVYMNLENNKLE 65 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~----~l~~~~-------~~~~~l~~l~l~~~~l~~-----l~~~~~~~~~L~~L~l~~n~l~ 65 (183)
|..+++|+.|++++|.+. .+|..+ ..+++|+.|++++|.++. ++..+..+++|++|++++|.++
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 445666666666665433 222222 355666777777766664 4445556666666666666665
Q ss_pred cccCc-----c-cc---------CCCCeEeCCCCCCC--Ccc---hhccCCCCCcEEEcCCCcccccc---C-chhhhcC
Q psy3781 66 TIDID-----F-NF---------GHLRELNLSSNKFQ--QIP---KCIFHLDNLEILILNNNDIEEIN---Q-PEKLVKM 121 (183)
Q Consensus 66 ~~~~~-----~-~~---------~~L~~L~l~~~~~~--~~~---~~~~~~~~L~~l~l~~n~~~~~~---~-~~~~~~~ 121 (183)
..... + .+ ++|++|++++|+++ .++ ..+..+++|+.|++++|.+++.+ . +..+..+
T Consensus 136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~ 215 (386)
T 2ca6_A 136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC
T ss_pred HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC
Confidence 32221 1 22 56666666666665 222 23344556666666666665321 0 1144555
Q ss_pred CCccEEeCCCCCCc-----cCChhccccCcccEEeccCCcCCCC
Q psy3781 122 QKLTVLDLSNNNIR-----KIPYELGLAQQLHHLNLVGNCFKYP 160 (183)
Q Consensus 122 ~~L~~l~l~~n~l~-----~~~~~~~~~~~L~~l~l~~n~~~~~ 160 (183)
++|+.|++++|.++ .+|..+..+++|+.|++++|.+++.
T Consensus 216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence 66666666666662 3455555566666666666665554
No 118
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=2.6e-18 Score=129.00 Aligned_cols=115 Identities=21% Similarity=0.228 Sum_probs=67.3
Q ss_pred ccCCCCCceEEcCCCcccc------ccCcc-ccCCCCeEeCCCCCCC-----CcchhccCCCCCcEEEcCCCccccccC-
Q psy3781 48 LLNLRHLVYMNLENNKLET------IDIDF-NFGHLRELNLSSNKFQ-----QIPKCIFHLDNLEILILNNNDIEEINQ- 114 (183)
Q Consensus 48 ~~~~~~L~~L~l~~n~l~~------~~~~~-~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~l~l~~n~~~~~~~- 114 (183)
+..+++|++|++++|.++. .+..+ .+++|++|++++|.++ .++..+..+++|+.|++++|.+++.+.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 3345556666666665551 12133 5566666666666663 344555556667777777766665420
Q ss_pred --chhhh--cCCCccEEeCCCCCCcc-----CChhc-cccCcccEEeccCCcCCCCcH
Q psy3781 115 --PEKLV--KMQKLTVLDLSNNNIRK-----IPYEL-GLAQQLHHLNLVGNCFKYPRQ 162 (183)
Q Consensus 115 --~~~~~--~~~~L~~l~l~~n~l~~-----~~~~~-~~~~~L~~l~l~~n~~~~~~~ 162 (183)
+..+. .+++|+.|++++|.++. +|..+ ..+++|+.|++++|++++..+
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 22232 26677777777777765 56555 446777777777777776663
No 119
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.71 E-value=1.9e-17 Score=121.94 Aligned_cols=152 Identities=22% Similarity=0.292 Sum_probs=74.6
Q ss_pred CCCCccEEecCCCccee--cccccccCCCccEEEcCCCcCC-CCCccccCCCCCceEEcCCC-cccc--ccCcc-ccCCC
Q psy3781 4 KEAQVEQADLSYNRLHV--VNSKLFDITSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLENN-KLET--IDIDF-NFGHL 76 (183)
Q Consensus 4 ~~~~l~~l~l~~~~i~~--l~~~~~~~~~l~~l~l~~~~l~-~l~~~~~~~~~L~~L~l~~n-~l~~--~~~~~-~~~~L 76 (183)
.+++|+.|++++|.+.. ++..+..+++|+.|++++|.++ ..+..+..+++|++|++++| .++. ++..+ .+++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 34556666666665552 4444445566666666666555 33344445555666666555 3442 22223 45555
Q ss_pred CeEeCCCC-CCCC--cchhccCCC-CCcEEEcCCC--ccccccCchhhhcCCCccEEeCCCCC-Cc-cCChhccccCccc
Q psy3781 77 RELNLSSN-KFQQ--IPKCIFHLD-NLEILILNNN--DIEEINQPEKLVKMQKLTVLDLSNNN-IR-KIPYELGLAQQLH 148 (183)
Q Consensus 77 ~~L~l~~~-~~~~--~~~~~~~~~-~L~~l~l~~n--~~~~~~~~~~~~~~~~L~~l~l~~n~-l~-~~~~~~~~~~~L~ 148 (183)
++|++++| .++. ++..+..++ +|+.|++++| .+++...+..+..+++|+.|++++|. ++ ..+..+..+++|+
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 250 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 250 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence 55555555 5542 233344444 5555555555 23221113344445555555555554 33 2333344445555
Q ss_pred EEeccCC
Q psy3781 149 HLNLVGN 155 (183)
Q Consensus 149 ~l~l~~n 155 (183)
.|++++|
T Consensus 251 ~L~l~~~ 257 (336)
T 2ast_B 251 HLSLSRC 257 (336)
T ss_dssp EEECTTC
T ss_pred EeeCCCC
Confidence 5555554
No 120
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.71 E-value=6.2e-18 Score=124.51 Aligned_cols=163 Identities=20% Similarity=0.198 Sum_probs=133.7
Q ss_pred CCccEEecCCCcceecccccccCCCccEEEcCCCcCCC--CCccccCCCCCceEEcCCCccccc-cCcc-ccCCCCeEeC
Q psy3781 6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQN--LPPDLLNLRHLVYMNLENNKLETI-DIDF-NFGHLRELNL 81 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~--l~~~~~~~~~L~~L~l~~n~l~~~-~~~~-~~~~L~~L~l 81 (183)
+.++.+++.++.+...++.++.+++|+.|++++|.++. ++..+..+++|++|++++|.++.. +..+ .+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 67899999999999877778889999999999999873 677788899999999999988743 3333 7899999999
Q ss_pred CCC-CCCC--cchhccCCCCCcEEEcCCC-ccccccCchhhhcCC-CccEEeCCCC--CCc--cCChhccccCcccEEec
Q psy3781 82 SSN-KFQQ--IPKCIFHLDNLEILILNNN-DIEEINQPEKLVKMQ-KLTVLDLSNN--NIR--KIPYELGLAQQLHHLNL 152 (183)
Q Consensus 82 ~~~-~~~~--~~~~~~~~~~L~~l~l~~n-~~~~~~~~~~~~~~~-~L~~l~l~~n--~l~--~~~~~~~~~~~L~~l~l 152 (183)
++| .++. ++..+..+++|+.|++++| .+++...+..+..++ +|++|++++| .++ .++..+..+++|+.|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 999 6773 5566777899999999999 888753367788899 9999999999 454 56777788999999999
Q ss_pred cCCc-CCCCcHHHhhhC
Q psy3781 153 VGNC-FKYPRQDILQKG 168 (183)
Q Consensus 153 ~~n~-~~~~~~~~~~~~ 168 (183)
++|. +++.....+.+.
T Consensus 230 ~~~~~l~~~~~~~l~~l 246 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQL 246 (336)
T ss_dssp TTCTTCCGGGGGGGGGC
T ss_pred CCCCcCCHHHHHHHhCC
Confidence 9998 666666555443
No 121
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=5.1e-16 Score=104.43 Aligned_cols=129 Identities=22% Similarity=0.288 Sum_probs=112.3
Q ss_pred CccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCC
Q psy3781 7 QVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSS 83 (183)
Q Consensus 7 ~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~ 83 (183)
..+.+++.++.+..+|..+. ++++.|++++|+++.++.. +..+++|++|++++|.++.++... .+++|++|++++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 45789999999999887664 7999999999999988765 678999999999999999888765 889999999999
Q ss_pred CCCCCcchh-ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCC
Q psy3781 84 NKFQQIPKC-IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIP 138 (183)
Q Consensus 84 ~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~ 138 (183)
|.++.++.. +..+++|+.|++++|.++.+. +..+..+++|+.+++++|.++...
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeC-HHHhcCCcccCEEEecCCCeeccC
Confidence 999988764 567899999999999999885 556788999999999999988543
No 122
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.69 E-value=6.6e-16 Score=122.13 Aligned_cols=95 Identities=19% Similarity=0.251 Sum_probs=48.3
Q ss_pred CccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCCCC
Q psy3781 7 QVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKF 86 (183)
Q Consensus 7 ~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~~ 86 (183)
+|+.|++++|.++.+|. .+++|+.|++++|+++.+|. .+++|++|++++|.++.++. .+.+|+.|++++|++
T Consensus 62 ~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l 133 (622)
T 3g06_A 62 HITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQL 133 (622)
T ss_dssp TCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCC
T ss_pred CCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCC
Confidence 44445555554444444 23445555555555554444 33455555555555554443 334555555555555
Q ss_pred CCcchhccCCCCCcEEEcCCCccccc
Q psy3781 87 QQIPKCIFHLDNLEILILNNNDIEEI 112 (183)
Q Consensus 87 ~~~~~~~~~~~~L~~l~l~~n~~~~~ 112 (183)
+.+|.. +++|+.|++++|.++++
T Consensus 134 ~~lp~~---l~~L~~L~Ls~N~l~~l 156 (622)
T 3g06_A 134 TSLPVL---PPGLQELSVSDNQLASL 156 (622)
T ss_dssp SCCCCC---CTTCCEEECCSSCCSCC
T ss_pred CcCCCC---CCCCCEEECcCCcCCCc
Confidence 555442 25566666666666554
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.69 E-value=3.5e-19 Score=122.10 Aligned_cols=150 Identities=24% Similarity=0.284 Sum_probs=120.5
Q ss_pred ccEEecCCC--cceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCC
Q psy3781 8 VEQADLSYN--RLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSN 84 (183)
Q Consensus 8 l~~l~l~~~--~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~ 84 (183)
++...+.+. .+..++..+..+++|+.|++++|.++.+| .+..+++|++|++++|.++.++... .+++|++|++++|
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC
Confidence 344444433 34455557778999999999999999988 8888999999999999999888766 6789999999999
Q ss_pred CCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh-----------hccccCcccEEecc
Q psy3781 85 KFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY-----------ELGLAQQLHHLNLV 153 (183)
Q Consensus 85 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-----------~~~~~~~L~~l~l~ 153 (183)
.++.++ .+..+++|+.|++++|.++++.....+..+++|+++++++|.+++.+. .+..+++|+.|+
T Consensus 104 ~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld-- 180 (198)
T 1ds9_A 104 QIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD-- 180 (198)
T ss_dssp ECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--
T ss_pred cCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--
Confidence 999886 567788999999999999987412578889999999999999875422 267889999886
Q ss_pred CCcCCCCc
Q psy3781 154 GNCFKYPR 161 (183)
Q Consensus 154 ~n~~~~~~ 161 (183)
+++++...
T Consensus 181 ~~~i~~~e 188 (198)
T 1ds9_A 181 GMPVDVDE 188 (198)
T ss_dssp CGGGTTTT
T ss_pred CcccCHHH
Confidence 77776543
No 124
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=1.5e-16 Score=117.96 Aligned_cols=160 Identities=21% Similarity=0.239 Sum_probs=105.9
Q ss_pred CCccEEecCCCcceeccccc-ccCCCccEEEcCCCcCC-CCCcc-ccCCCCCce-EEcCCCccccccCcc--ccCCCCeE
Q psy3781 6 AQVEQADLSYNRLHVVNSKL-FDITSIRELDLSHNLIQ-NLPPD-LLNLRHLVY-MNLENNKLETIDIDF--NFGHLREL 79 (183)
Q Consensus 6 ~~l~~l~l~~~~i~~l~~~~-~~~~~l~~l~l~~~~l~-~l~~~-~~~~~~L~~-L~l~~n~l~~~~~~~--~~~~L~~L 79 (183)
+++++|++++|.|+.+++.. .++++|+.|++++|++. .++.. |.+++++.. +...+|.+..+++.. .+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 36788888888888887764 46788888888888764 34432 455555443 444556666665443 55666666
Q ss_pred eCCCCCCCCc-------------------------chh-ccC-CCCCcEEEcCCCccccccCchhhhcCCCccEEeCCC-
Q psy3781 80 NLSSNKFQQI-------------------------PKC-IFH-LDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN- 131 (183)
Q Consensus 80 ~l~~~~~~~~-------------------------~~~-~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~- 131 (183)
++++|+++.+ +.. +.. ...++.|++++|.++.+ +.......+++.+++.+
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i--~~~~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI--HNSAFNGTQLDELNLSDN 187 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE--CTTSSTTEEEEEEECTTC
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC--ChhhccccchhHHhhccC
Confidence 6666655432 221 111 23466778888888877 34444556788888874
Q ss_pred CCCccCChh-ccccCcccEEeccCCcCCCCcHHHhhh
Q psy3781 132 NNIRKIPYE-LGLAQQLHHLNLVGNCFKYPRQDILQK 167 (183)
Q Consensus 132 n~l~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~ 167 (183)
|.++.+|.. +..+++|+.|++++|.++..+...+.+
T Consensus 188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~ 224 (350)
T 4ay9_X 188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224 (350)
T ss_dssp TTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT
T ss_pred CcccCCCHHHhccCcccchhhcCCCCcCccChhhhcc
Confidence 678888764 688889999999999998888766554
No 125
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.68 E-value=6.6e-18 Score=129.24 Aligned_cols=162 Identities=22% Similarity=0.205 Sum_probs=111.6
Q ss_pred CCCCccEEecCCCcceec-----ccccc-cCCCccEEEcCCCcCCC-----CCccccCCCCCceEEcCCCccccccCcc-
Q psy3781 4 KEAQVEQADLSYNRLHVV-----NSKLF-DITSIRELDLSHNLIQN-----LPPDLLNLRHLVYMNLENNKLETIDIDF- 71 (183)
Q Consensus 4 ~~~~l~~l~l~~~~i~~l-----~~~~~-~~~~l~~l~l~~~~l~~-----l~~~~~~~~~L~~L~l~~n~l~~~~~~~- 71 (183)
.+++|+.|++++|.+... .+.+. .+++|+.|++++|.++. ++..+..+++|++|++++|.++..+...
T Consensus 225 ~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 304 (461)
T 1z7x_W 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 304 (461)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence 356666666666665521 22222 35677777777777664 4555666777777887777766432211
Q ss_pred ------ccCCCCeEeCCCCCCCC-----cchhccCCCCCcEEEcCCCccccccCchhhhc-----CCCccEEeCCCCCCc
Q psy3781 72 ------NFGHLRELNLSSNKFQQ-----IPKCIFHLDNLEILILNNNDIEEINQPEKLVK-----MQKLTVLDLSNNNIR 135 (183)
Q Consensus 72 ------~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~-----~~~L~~l~l~~n~l~ 135 (183)
..++|++|++++|.++. ++..+..+++|+.|++++|.+++.+ +..+.. .+.|+.|++++|.++
T Consensus 305 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~-~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG-VRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH-HHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccccc-HHHHHHHHcCCCCceEEEECCCCCCC
Confidence 22578888888887773 3445556788999999999888765 343432 578999999999988
Q ss_pred -----cCChhccccCcccEEeccCCcCCCCcHHHhh
Q psy3781 136 -----KIPYELGLAQQLHHLNLVGNCFKYPRQDILQ 166 (183)
Q Consensus 136 -----~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 166 (183)
.++..+..+++|++|++++|++++.+...+.
T Consensus 384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~ 419 (461)
T 1z7x_W 384 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 419 (461)
T ss_dssp HHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHH
Confidence 5677788899999999999998877655544
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=1.2e-15 Score=119.58 Aligned_cols=121 Identities=21% Similarity=0.303 Sum_probs=105.5
Q ss_pred CccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCc
Q psy3781 30 SIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNND 108 (183)
Q Consensus 30 ~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~ 108 (183)
.|+.|++++|.++.+|. +..+++|+.|++++|.++.+|..+ .+++|+.|++++|.++.+| .+..+++|+.|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 58899999999999887 888999999999999999998877 8999999999999999987 78889999999999999
Q ss_pred cccccCchhhhcCCCccEEeCCCCCCccCChh----ccccCcccEEec
Q psy3781 109 IEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE----LGLAQQLHHLNL 152 (183)
Q Consensus 109 ~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~----~~~~~~L~~l~l 152 (183)
+++...+..++.+++|+.|++++|.++.+|.. +..+++|+.|++
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 98874357888999999999999999977654 344788888864
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=1.5e-15 Score=111.72 Aligned_cols=94 Identities=17% Similarity=0.252 Sum_probs=78.7
Q ss_pred cCCCCeEeCCCCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCcc-EEeCCCCCCccCC-hhccccCcccE
Q psy3781 73 FGHLRELNLSSNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT-VLDLSNNNIRKIP-YELGLAQQLHH 149 (183)
Q Consensus 73 ~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~-~l~l~~n~l~~~~-~~~~~~~~L~~ 149 (183)
+++|+++++.+|+++.++. .+..+.+|+.+++.+| +..++ ...|.++++|+ .+.+.+ .++.++ .++.+|++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~-~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIG-QRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEEC-TTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceeh-HHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 5688899999988988876 4556889999999887 77777 78889999999 999988 777776 45889999999
Q ss_pred EeccCCcCCCCcHHHhhhCh
Q psy3781 150 LNLVGNCFKYPRQDILQKGT 169 (183)
Q Consensus 150 l~l~~n~~~~~~~~~~~~~~ 169 (183)
+++.+|.++.++...|.+..
T Consensus 302 l~l~~n~i~~I~~~aF~~~~ 321 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGV 321 (329)
T ss_dssp EEECSSCCCEECTTTTCTTC
T ss_pred EEeCCCccCccchhhhcCCc
Confidence 99999999999988887653
No 128
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.63 E-value=7.6e-16 Score=114.68 Aligned_cols=164 Identities=21% Similarity=0.232 Sum_probs=123.7
Q ss_pred CCCCccEEecCCCcceecc-----cccccCC-CccEEEcCCCcCCCCC-ccccCC-----CCCceEEcCCCccccccCc-
Q psy3781 4 KEAQVEQADLSYNRLHVVN-----SKLFDIT-SIRELDLSHNLIQNLP-PDLLNL-----RHLVYMNLENNKLETIDID- 70 (183)
Q Consensus 4 ~~~~l~~l~l~~~~i~~l~-----~~~~~~~-~l~~l~l~~~~l~~l~-~~~~~~-----~~L~~L~l~~n~l~~~~~~- 70 (183)
..++|+.|++++|.++..+ ..+..++ +|++|++++|.++... ..+..+ ++|++|++++|.++..+..
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 3456999999999999765 3455677 8999999999998553 334432 8999999999999866554
Q ss_pred ----c-cc-CCCCeEeCCCCCCCCcch-h----ccC-CCCCcEEEcCCCccccccC---chhhhcCC-CccEEeCCCCCC
Q psy3781 71 ----F-NF-GHLRELNLSSNKFQQIPK-C----IFH-LDNLEILILNNNDIEEINQ---PEKLVKMQ-KLTVLDLSNNNI 134 (183)
Q Consensus 71 ----~-~~-~~L~~L~l~~~~~~~~~~-~----~~~-~~~L~~l~l~~n~~~~~~~---~~~~~~~~-~L~~l~l~~n~l 134 (183)
+ .. ++|++|++++|.++..+. . +.. ..+|+.|++++|.+++.+. +..+...+ +|++|++++|.+
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 2 33 799999999999985533 2 223 3689999999999986541 22334454 999999999999
Q ss_pred ccCCh-----hcccc-CcccEEeccCCcCCCCcHHHhhh
Q psy3781 135 RKIPY-----ELGLA-QQLHHLNLVGNCFKYPRQDILQK 167 (183)
Q Consensus 135 ~~~~~-----~~~~~-~~L~~l~l~~n~~~~~~~~~~~~ 167 (183)
++... .+..+ ++|+.|++++|.+++.+...+..
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~ 218 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY 218 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence 86553 34555 59999999999999877665444
No 129
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=1.6e-15 Score=112.49 Aligned_cols=157 Identities=20% Similarity=0.227 Sum_probs=116.7
Q ss_pred ccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccc-cccCcc--ccCCCCe-EeCC
Q psy3781 8 VEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLE-TIDIDF--NFGHLRE-LNLS 82 (183)
Q Consensus 8 l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~-~~~~~~--~~~~L~~-L~l~ 82 (183)
-++++++++.++++|..+ .+++++|++++|+++.++.. |.++++|++|++++|.+. .++... .++++++ +.+.
T Consensus 11 ~~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 11 NRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TTEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CCEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 367899999999999877 36899999999999999875 788999999999999975 466654 7777765 5667
Q ss_pred CCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcC--------------------------CCccEEeCCCCCCc
Q psy3781 83 SNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKM--------------------------QKLTVLDLSNNNIR 135 (183)
Q Consensus 83 ~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~--------------------------~~L~~l~l~~n~l~ 135 (183)
.|+++.+++ .+..+++|+.+++++|.+.... +..+... ..++.|++++|.++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCC-CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCchhhhhccccccccccccccccCC-chhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 789998855 5667999999999999887653 2222111 24566777777777
Q ss_pred cCChhccccCcccEEeccC-CcCCCCcHHHhhh
Q psy3781 136 KIPYELGLAQQLHHLNLVG-NCFKYPRQDILQK 167 (183)
Q Consensus 136 ~~~~~~~~~~~L~~l~l~~-n~~~~~~~~~~~~ 167 (183)
+++.......+++.+++.+ |.++.++.++|..
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~ 200 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG 200 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTT
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhcc
Confidence 7766655556677777753 5666666666544
No 130
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.62 E-value=6.4e-17 Score=123.77 Aligned_cols=134 Identities=16% Similarity=0.146 Sum_probs=67.0
Q ss_pred CCccEEEcCCCcCCC-----CCccccCCCCCceEEcCCCcccccc-----Ccc--ccCCCCeEeCCCCCCCC-----cch
Q psy3781 29 TSIRELDLSHNLIQN-----LPPDLLNLRHLVYMNLENNKLETID-----IDF--NFGHLRELNLSSNKFQQ-----IPK 91 (183)
Q Consensus 29 ~~l~~l~l~~~~l~~-----l~~~~~~~~~L~~L~l~~n~l~~~~-----~~~--~~~~L~~L~l~~~~~~~-----~~~ 91 (183)
++|+.|++++|.++. ++..+..+++|++|++++|.++... ... .+++|++|++++|.++. ++.
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 278 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence 355555555555543 2333444556666666666554321 111 24556666666666553 344
Q ss_pred hccCCCCCcEEEcCCCccccccCchhhhc-----CCCccEEeCCCCCCcc-----CChhccccCcccEEeccCCcCCCCc
Q psy3781 92 CIFHLDNLEILILNNNDIEEINQPEKLVK-----MQKLTVLDLSNNNIRK-----IPYELGLAQQLHHLNLVGNCFKYPR 161 (183)
Q Consensus 92 ~~~~~~~L~~l~l~~n~~~~~~~~~~~~~-----~~~L~~l~l~~n~l~~-----~~~~~~~~~~L~~l~l~~n~~~~~~ 161 (183)
.+..+++|+.|++++|.+++.+ +..+.. .++|+.|++++|.+++ ++..+..+++|+.|++++|.+.+.+
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~-~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 357 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEG-ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 357 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHH-HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH
T ss_pred HHhhCCCcceEECCCCCCchHH-HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccccc
Confidence 4444566666666666655432 222221 1355555555555542 2333445555666666665555444
Q ss_pred HH
Q psy3781 162 QD 163 (183)
Q Consensus 162 ~~ 163 (183)
..
T Consensus 358 ~~ 359 (461)
T 1z7x_W 358 VR 359 (461)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 131
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.61 E-value=1.6e-14 Score=96.55 Aligned_cols=103 Identities=21% Similarity=0.302 Sum_probs=65.0
Q ss_pred ccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCCCcchh-ccCCCCCcEEEcCCC
Q psy3781 31 IRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQIPKC-IFHLDNLEILILNNN 107 (183)
Q Consensus 31 l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~n 107 (183)
.+.++++++.++.+|..+. +++++|++++|.++.+++.. .+++|++|++++|+++.++.. +..+++|+.|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4567777777777766552 56777777777776664433 566666666666666666553 345666666666666
Q ss_pred ccccccCchhhhcCCCccEEeCCCCCCcc
Q psy3781 108 DIEEINQPEKLVKMQKLTVLDLSNNNIRK 136 (183)
Q Consensus 108 ~~~~~~~~~~~~~~~~L~~l~l~~n~l~~ 136 (183)
.++.+. +..+..+++|+.|++++|.++.
T Consensus 89 ~l~~~~-~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIP-RGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCC-TTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeC-HHHhcCCCCCCEEEeCCCCCCC
Confidence 666654 3446666666666666666653
No 132
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.60 E-value=1.9e-14 Score=96.55 Aligned_cols=105 Identities=22% Similarity=0.276 Sum_probs=73.5
Q ss_pred cEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCCCcchh-ccCCCCCcEEEcCCCc
Q psy3781 32 RELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQIPKC-IFHLDNLEILILNNND 108 (183)
Q Consensus 32 ~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~n~ 108 (183)
+.++++++.++.+|..+. +++++|++++|.++.+++.. .+++|++|++++|+++.++.. +..+++|+.|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 567788888877777653 67778888888777775543 677777777777777777654 3457777777777777
Q ss_pred cccccCchhhhcCCCccEEeCCCCCCccCCh
Q psy3781 109 IEEINQPEKLVKMQKLTVLDLSNNNIRKIPY 139 (183)
Q Consensus 109 ~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~ 139 (183)
++.+. +..+..+++|+.|++++|.+...+.
T Consensus 93 l~~l~-~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 93 LKSIP-RGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCC-TTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred cceeC-HHHhccccCCCEEEeCCCCcccccc
Confidence 77664 4446667777777777777765443
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.57 E-value=3.3e-14 Score=95.03 Aligned_cols=104 Identities=26% Similarity=0.316 Sum_probs=92.7
Q ss_pred CccEEecCCCcceecccccccCCCccEEEcCCCcCCCCC-ccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCC
Q psy3781 7 QVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLP-PDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSS 83 (183)
Q Consensus 7 ~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~-~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~ 83 (183)
..+.++++++.+..+|..+. ++++.|++++|.++.++ ..|..+++|++|++++|.++.++... .+++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 46889999999999998774 89999999999999884 45888999999999999999998875 889999999999
Q ss_pred CCCCCcchh-ccCCCCCcEEEcCCCccccc
Q psy3781 84 NKFQQIPKC-IFHLDNLEILILNNNDIEEI 112 (183)
Q Consensus 84 ~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~ 112 (183)
|+++.++.. +..+++|+.|++++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 999998774 66799999999999998754
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.56 E-value=4.9e-14 Score=94.55 Aligned_cols=102 Identities=25% Similarity=0.302 Sum_probs=70.4
Q ss_pred cEEecCCCcceecccccccCCCccEEEcCCCcCCCCC-ccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCC
Q psy3781 9 EQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLP-PDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNK 85 (183)
Q Consensus 9 ~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~-~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~ 85 (183)
+.++++++.+..+|..+. ++++.|++++|+++.++ ..|..+++|++|++++|.++.++... .+++|++|++++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 567777777777776653 67777777777777653 34666777777777777777776654 66777777777777
Q ss_pred CCCcchh-ccCCCCCcEEEcCCCccccc
Q psy3781 86 FQQIPKC-IFHLDNLEILILNNNDIEEI 112 (183)
Q Consensus 86 ~~~~~~~-~~~~~~L~~l~l~~n~~~~~ 112 (183)
++.++.. +..+++|+.|++++|.+...
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred cceeCHHHhccccCCCEEEeCCCCcccc
Confidence 7776654 55577777777777776543
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=5.1e-17 Score=111.32 Aligned_cols=130 Identities=22% Similarity=0.285 Sum_probs=111.7
Q ss_pred CCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEe
Q psy3781 2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELN 80 (183)
Q Consensus 2 l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~ 80 (183)
+..+++|+.|++++|.+..++ .+..+++|+.|++++|.++.+|..+..+++|++|++++|.++.++ .+ .+++|++|+
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY 121 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence 356789999999999999988 777899999999999999999887777899999999999999887 45 889999999
Q ss_pred CCCCCCCCcch--hccCCCCCcEEEcCCCccccccCc----------hhhhcCCCccEEeCCCCCCcc
Q psy3781 81 LSSNKFQQIPK--CIFHLDNLEILILNNNDIEEINQP----------EKLVKMQKLTVLDLSNNNIRK 136 (183)
Q Consensus 81 l~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~----------~~~~~~~~L~~l~l~~n~l~~ 136 (183)
+++|.++.++. .+..+++|+.+++++|.+.+.. + ..+..+++|+.++ ++.++.
T Consensus 122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY-KENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH-HTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc-ccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 99999998754 6778999999999999997652 2 2377899999987 666653
No 136
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.55 E-value=7.4e-16 Score=115.11 Aligned_cols=164 Identities=16% Similarity=0.140 Sum_probs=122.4
Q ss_pred CCCccEEecCCCcceec-----ccccc-cCCCccEEEcCCCcCCC--CCccccCCCCCceEEcCCCccccccCcc-----
Q psy3781 5 EAQVEQADLSYNRLHVV-----NSKLF-DITSIRELDLSHNLIQN--LPPDLLNLRHLVYMNLENNKLETIDIDF----- 71 (183)
Q Consensus 5 ~~~l~~l~l~~~~i~~l-----~~~~~-~~~~l~~l~l~~~~l~~--l~~~~~~~~~L~~L~l~~n~l~~~~~~~----- 71 (183)
++.++.|++++|.++.. ...+. ...+|+.|++++|.++. +......+.+|+.|++++|.+++.+...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35789999999998832 22222 23699999999999873 2222334568999999999987543322
Q ss_pred --ccCCCCeEeCCCCCCCC-----cchhccCCCCCcEEEcCCCccccccC---chhhhcCCCccEEeCCCCCCcc-----
Q psy3781 72 --NFGHLRELNLSSNKFQQ-----IPKCIFHLDNLEILILNNNDIEEINQ---PEKLVKMQKLTVLDLSNNNIRK----- 136 (183)
Q Consensus 72 --~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~~~~~L~~l~l~~n~l~~----- 136 (183)
..++|++|++++|.++. ++..+...++|+.|++++|.+++.+. ...+...+.|+.|++++|.+++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 35789999999999873 44455678899999999999987541 2345567899999999999983
Q ss_pred CChhccccCcccEEeccCCcCCCCcHHHhhhC
Q psy3781 137 IPYELGLAQQLHHLNLVGNCFKYPRQDILQKG 168 (183)
Q Consensus 137 ~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 168 (183)
++..+..+++|+.|++++|.++..+...+...
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 34456678899999999999998888777654
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=8.2e-14 Score=102.41 Aligned_cols=99 Identities=15% Similarity=0.155 Sum_probs=87.6
Q ss_pred CCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCCCcch-hccCCCCCc-EEEcCCCccccccCchhhhcCCCccE
Q psy3781 51 LRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQIPK-CIFHLDNLE-ILILNNNDIEEINQPEKLVKMQKLTV 126 (183)
Q Consensus 51 ~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~-~l~l~~n~~~~~~~~~~~~~~~~L~~ 126 (183)
+++|+.+++++|.++.++... .+.+|+++++..| +..++. .+..+.+|+ .+++.+ .++.++ ...|.++++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~-~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIE-FGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEEC-TTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEc-hhhhhCCccCCE
Confidence 678999999999999999887 8889999999997 888866 566788999 999988 888887 789999999999
Q ss_pred EeCCCCCCccCCh-hccccCcccEEec
Q psy3781 127 LDLSNNNIRKIPY-ELGLAQQLHHLNL 152 (183)
Q Consensus 127 l~l~~n~l~~~~~-~~~~~~~L~~l~l 152 (183)
+++.+|.++.++. .+.++++|+.++.
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEeCCCccCccchhhhcCCcchhhhcc
Confidence 9999999998876 4899999999874
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.41 E-value=2.8e-12 Score=96.64 Aligned_cols=161 Identities=17% Similarity=0.246 Sum_probs=93.0
Q ss_pred CCCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCc---------
Q psy3781 1 MIAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDID--------- 70 (183)
Q Consensus 1 ~l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~--------- 70 (183)
+|..|.+|+.+++.++.+..++...+.+.+|+.+.+..+ ++.++.. |.++++|+.+++..+ ++.++..
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~ 252 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITT 252 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSE
T ss_pred HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccE
Confidence 466778888888888777777777776677777777643 5555443 455666666666543 3333332
Q ss_pred -------------c--ccCCCCeEeCCCCCCC-----Ccch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeC
Q psy3781 71 -------------F--NFGHLRELNLSSNKFQ-----QIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDL 129 (183)
Q Consensus 71 -------------~--~~~~L~~L~l~~~~~~-----~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 129 (183)
+ .+.+|+.+.+.++.+. .++. .+..+++|+.+++. +.++.++ ...|.++++|+.+.+
T Consensus 253 i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~-~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 253 VKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILG-QGLLGGNRKVTQLTI 330 (401)
T ss_dssp EEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEEC-TTTTTTCCSCCEEEE
T ss_pred EEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEh-hhhhcCCCCccEEEE
Confidence 2 4445555555444333 2322 33345555555555 3355554 555666666666666
Q ss_pred CCCCCccCCh-hccccCcccEEeccCCcCCCCcHHHhhh
Q psy3781 130 SNNNIRKIPY-ELGLAQQLHHLNLVGNCFKYPRQDILQK 167 (183)
Q Consensus 130 ~~n~l~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 167 (183)
..+ ++.+.. ++.++ +|+.+++.+|.+.......|..
T Consensus 331 p~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~ 367 (401)
T 4fdw_A 331 PAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYG 367 (401)
T ss_dssp CTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCC
T ss_pred Ccc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccC
Confidence 443 554443 35666 7777777777665555554443
No 139
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.38 E-value=4.4e-12 Score=93.71 Aligned_cols=100 Identities=21% Similarity=0.329 Sum_probs=63.0
Q ss_pred EEEcCCC-cCCCCCccccCCCCCceEEcCC-CccccccCcc--ccCCCCeEeCCCCCCCCcch-hccCCCCCcEEEcCCC
Q psy3781 33 ELDLSHN-LIQNLPPDLLNLRHLVYMNLEN-NKLETIDIDF--NFGHLRELNLSSNKFQQIPK-CIFHLDNLEILILNNN 107 (183)
Q Consensus 33 ~l~l~~~-~l~~l~~~~~~~~~L~~L~l~~-n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~n 107 (183)
.++.+++ +++.+|. +..+++|+.|++++ |.++.+++.. .+.+|++|++++|+++.+++ .+..+++|+.|++++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3566666 6777777 66677777777774 7777666443 66667777777776666544 4455666666677666
Q ss_pred ccccccCchhhhcCCCccEEeCCCCCCc
Q psy3781 108 DIEEINQPEKLVKMQKLTVLDLSNNNIR 135 (183)
Q Consensus 108 ~~~~~~~~~~~~~~~~L~~l~l~~n~l~ 135 (183)
.++.+. +..+..++ |+.|++.+|.+.
T Consensus 91 ~l~~~~-~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLS-WKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCC-STTTCSCC-CCEEECCSSCCC
T ss_pred ccceeC-HHHcccCC-ceEEEeeCCCcc
Confidence 666653 33333333 666666666665
No 140
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.37 E-value=3.2e-12 Score=94.45 Aligned_cols=102 Identities=22% Similarity=0.224 Sum_probs=88.5
Q ss_pred cEEecCCC-cceecccccccCCCccEEEcCC-CcCCCCCc-cccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCC
Q psy3781 9 EQADLSYN-RLHVVNSKLFDITSIRELDLSH-NLIQNLPP-DLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSS 83 (183)
Q Consensus 9 ~~l~l~~~-~i~~l~~~~~~~~~l~~l~l~~-~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~ 83 (183)
..++++++ .+..+|. +..+.+|+.|+|++ |.++.+++ .|..+++|+.|++++|.++.+++.. .+++|++|++++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 45789888 8999999 88899999999996 99998875 5888999999999999999888765 899999999999
Q ss_pred CCCCCcchhccCCCCCcEEEcCCCcccc
Q psy3781 84 NKFQQIPKCIFHLDNLEILILNNNDIEE 111 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 111 (183)
|+++.++...+....|+.|++.+|.+.-
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCccC
Confidence 9999998766554459999999998863
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.34 E-value=3.2e-13 Score=106.26 Aligned_cols=142 Identities=15% Similarity=0.132 Sum_probs=96.4
Q ss_pred cCCCccEEEcCCCcCCC-CCcccc-CCCCCceEEcC----CCccccccCc------c-ccCCCCeEeCCCCC--CCC-cc
Q psy3781 27 DITSIRELDLSHNLIQN-LPPDLL-NLRHLVYMNLE----NNKLETIDID------F-NFGHLRELNLSSNK--FQQ-IP 90 (183)
Q Consensus 27 ~~~~l~~l~l~~~~l~~-l~~~~~-~~~~L~~L~l~----~n~l~~~~~~------~-~~~~L~~L~l~~~~--~~~-~~ 90 (183)
.+++|+.|+++.+.++. ....+. .+++|+.|+++ .+.++..+.. + .+++|++|++++|. ++. ..
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 46667777665555552 122233 36778888875 4555543221 2 57788888886543 442 22
Q ss_pred hhcc-CCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCcc--CChhccccCcccEEeccCCcCCCCcHHHhhh
Q psy3781 91 KCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRK--IPYELGLAQQLHHLNLVGNCFKYPRQDILQK 167 (183)
Q Consensus 91 ~~~~-~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~--~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 167 (183)
..+. .+++|+.|++++|.+++.+.+..+..+++|+.|++++|.+++ ++..+..+++|+.|++++|.++..+.+.+.+
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~ 535 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQM 535 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGG
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHH
Confidence 2232 478899999999998875534556788999999999999873 4444677899999999999998887766654
Q ss_pred C
Q psy3781 168 G 168 (183)
Q Consensus 168 ~ 168 (183)
.
T Consensus 536 ~ 536 (592)
T 3ogk_B 536 A 536 (592)
T ss_dssp C
T ss_pred h
Confidence 4
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.28 E-value=4.7e-11 Score=90.02 Aligned_cols=76 Identities=18% Similarity=0.289 Sum_probs=46.7
Q ss_pred CccEEecCCCcceecccccc-cCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCC
Q psy3781 7 QVEQADLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSS 83 (183)
Q Consensus 7 ~l~~l~l~~~~i~~l~~~~~-~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~ 83 (183)
+|+.+.+.+ .+..+....+ ++.+|+.+++.+++++.++.......+|+.+.+.. .++.++..+ .+.+|+.+++..
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCC
Confidence 355555553 4455554444 56677777777777776666544456677777763 366666655 666777777765
Q ss_pred C
Q psy3781 84 N 84 (183)
Q Consensus 84 ~ 84 (183)
+
T Consensus 236 ~ 236 (401)
T 4fdw_A 236 N 236 (401)
T ss_dssp T
T ss_pred C
Confidence 3
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=2.3e-12 Score=96.30 Aligned_cols=140 Identities=21% Similarity=0.234 Sum_probs=105.1
Q ss_pred CCCccEEEcCCCcCCCC-----CccccC-CCCCceEEcCCCccccccCc--c-ccCCCCeEeCCCCCCCCc-----chhc
Q psy3781 28 ITSIRELDLSHNLIQNL-----PPDLLN-LRHLVYMNLENNKLETIDID--F-NFGHLRELNLSSNKFQQI-----PKCI 93 (183)
Q Consensus 28 ~~~l~~l~l~~~~l~~l-----~~~~~~-~~~L~~L~l~~n~l~~~~~~--~-~~~~L~~L~l~~~~~~~~-----~~~~ 93 (183)
.+.++.+++++|.++.. ...+.. .++|++|++++|.++..... . .+.+|++|++++|.++.. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46799999999998832 222332 36899999999998753322 2 567899999999999843 2222
Q ss_pred -cCCCCCcEEEcCCCccccccC---chhhhcCCCccEEeCCCCCCcc-----CChhccccCcccEEeccCCcCCCCcHHH
Q psy3781 94 -FHLDNLEILILNNNDIEEINQ---PEKLVKMQKLTVLDLSNNNIRK-----IPYELGLAQQLHHLNLVGNCFKYPRQDI 164 (183)
Q Consensus 94 -~~~~~L~~l~l~~n~~~~~~~---~~~~~~~~~L~~l~l~~n~l~~-----~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 164 (183)
...++|+.|++++|.+++.+. ...+...++|++|++++|.+++ ++..+..+++|+.|++++|.++..+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 246789999999999987541 2334668899999999999983 3455778889999999999998877665
Q ss_pred hhh
Q psy3781 165 LQK 167 (183)
Q Consensus 165 ~~~ 167 (183)
+..
T Consensus 231 l~~ 233 (372)
T 3un9_A 231 LAR 233 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.23 E-value=4.8e-12 Score=99.57 Aligned_cols=57 Identities=9% Similarity=-0.000 Sum_probs=36.1
Q ss_pred CCCCccEEecCCCcce-----ecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcC
Q psy3781 4 KEAQVEQADLSYNRLH-----VVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLE 60 (183)
Q Consensus 4 ~~~~l~~l~l~~~~i~-----~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~ 60 (183)
.+++|+.|+++++.++ .++..+..+++|+.|++++|.+..++..+..+++|++|+++
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEEC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccc
Confidence 4677788888777765 23333446777788887777766555555555555555554
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.15 E-value=1.7e-11 Score=91.11 Aligned_cols=162 Identities=14% Similarity=0.132 Sum_probs=109.5
Q ss_pred CCCCCccEEecCCCcce----------ecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccC--c
Q psy3781 3 AKEAQVEQADLSYNRLH----------VVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDI--D 70 (183)
Q Consensus 3 ~~~~~l~~l~l~~~~i~----------~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~--~ 70 (183)
.++++|+.|.+.+.... .+...+..+++|+.|.++++.-..++. + ..++|++|++..+.+..-.. .
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence 34678999988654321 233334467899999998873223443 3 37899999999888763221 1
Q ss_pred c--ccCCCCeEeCCC--CC------CCCcchhc--cCCCCCcEEEcCCCccccccCchhhh---cCCCccEEeCCCCCCc
Q psy3781 71 F--NFGHLRELNLSS--NK------FQQIPKCI--FHLDNLEILILNNNDIEEINQPEKLV---KMQKLTVLDLSNNNIR 135 (183)
Q Consensus 71 ~--~~~~L~~L~l~~--~~------~~~~~~~~--~~~~~L~~l~l~~n~~~~~~~~~~~~---~~~~L~~l~l~~n~l~ 135 (183)
. .+++|++|+++. +. +..+...+ ..+++|+.|++.+|.+.+.. ...+. .+++|++|+++.|.++
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~-~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVV-VEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHH-HHHHHHCSSGGGCSEEECCSSCCB
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHH-HHHHHhCccCCCCCEEECCCCCCC
Confidence 1 578999998753 11 21222222 24789999999999887643 33333 4678999999999988
Q ss_pred c-----CChhccccCcccEEeccCCcCCCCcHHHhhh
Q psy3781 136 K-----IPYELGLAQQLHHLNLVGNCFKYPRQDILQK 167 (183)
Q Consensus 136 ~-----~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 167 (183)
+ ++..+..+++|+.|++++|.++....+.+.+
T Consensus 293 d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 293 DEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp HHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred hHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 4 3444567899999999999988777666654
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.12 E-value=1.8e-11 Score=96.31 Aligned_cols=104 Identities=17% Similarity=0.150 Sum_probs=63.4
Q ss_pred CCCCccEEecCCCccee-cccccc-cCCCccEEEcCCC-cCCC--CCccccCCCCCceEEcCCCccccccC-----cc-c
Q psy3781 4 KEAQVEQADLSYNRLHV-VNSKLF-DITSIRELDLSHN-LIQN--LPPDLLNLRHLVYMNLENNKLETIDI-----DF-N 72 (183)
Q Consensus 4 ~~~~l~~l~l~~~~i~~-l~~~~~-~~~~l~~l~l~~~-~l~~--l~~~~~~~~~L~~L~l~~n~l~~~~~-----~~-~ 72 (183)
.+++|+.|+++++.++. .+..+. .+++|+.|++++| .++. ++..+..+++|++|++++|.++.... .. .
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 46778888888877663 233333 4778888888877 4442 33444467788888888877654322 22 4
Q ss_pred cCCCCeEeCCCCC--CC--CcchhccCCCCCcEEEcCCC
Q psy3781 73 FGHLRELNLSSNK--FQ--QIPKCIFHLDNLEILILNNN 107 (183)
Q Consensus 73 ~~~L~~L~l~~~~--~~--~~~~~~~~~~~L~~l~l~~n 107 (183)
+++|++|++++|. ++ .+......+++|+.|++++|
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 5677777777775 22 11112233567777777766
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.05 E-value=4.7e-11 Score=93.95 Aligned_cols=80 Identities=16% Similarity=0.151 Sum_probs=48.4
Q ss_pred CCCCccEEecCCC-ccee--cccccccCCCccEEEcCCCcCCC-----CCccccCCCCCceEEcCCCccccccC-----c
Q psy3781 4 KEAQVEQADLSYN-RLHV--VNSKLFDITSIRELDLSHNLIQN-----LPPDLLNLRHLVYMNLENNKLETIDI-----D 70 (183)
Q Consensus 4 ~~~~l~~l~l~~~-~i~~--l~~~~~~~~~l~~l~l~~~~l~~-----l~~~~~~~~~L~~L~l~~n~l~~~~~-----~ 70 (183)
.+++|+.|++.+| .++. ++.....+++|++|++++|.++. ++.....+++|++|++++|. ..+.. .
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l 206 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERL 206 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHH
Confidence 4677888888777 5553 44444467788888888877653 22223346677777777775 21111 1
Q ss_pred c-ccCCCCeEeCCCC
Q psy3781 71 F-NFGHLRELNLSSN 84 (183)
Q Consensus 71 ~-~~~~L~~L~l~~~ 84 (183)
. .+++|++|++++|
T Consensus 207 ~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 207 VTRCPNLKSLKLNRA 221 (594)
T ss_dssp HHHCTTCCEEECCTT
T ss_pred HHhCCCCcEEecCCC
Confidence 1 4467777777766
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.03 E-value=1e-10 Score=79.00 Aligned_cols=113 Identities=12% Similarity=0.040 Sum_probs=83.9
Q ss_pred cccccCCCccEEEcCCC-cCC-----CCCccccCCCCCceEEcCCCcccccc-----Ccc-ccCCCCeEeCCCCCCCC--
Q psy3781 23 SKLFDITSIRELDLSHN-LIQ-----NLPPDLLNLRHLVYMNLENNKLETID-----IDF-NFGHLRELNLSSNKFQQ-- 88 (183)
Q Consensus 23 ~~~~~~~~l~~l~l~~~-~l~-----~l~~~~~~~~~L~~L~l~~n~l~~~~-----~~~-~~~~L~~L~l~~~~~~~-- 88 (183)
..+...+.|++|++++| .++ .+...+...+.|++|++++|.+.+-. ..+ ..++|++|++++|.++.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 33446788999999998 887 24445666788999999999887432 222 55789999999999883
Q ss_pred ---cchhccCCCCCcEEEc--CCCcccccc---CchhhhcCCCccEEeCCCCCCc
Q psy3781 89 ---IPKCIFHLDNLEILIL--NNNDIEEIN---QPEKLVKMQKLTVLDLSNNNIR 135 (183)
Q Consensus 89 ---~~~~~~~~~~L~~l~l--~~n~~~~~~---~~~~~~~~~~L~~l~l~~n~l~ 135 (183)
+...+...++|+.|++ ++|.+.+.+ ....+...+.|+.|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4556667788999999 889998754 1344455688999999999876
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.98 E-value=4.7e-10 Score=75.78 Aligned_cols=115 Identities=14% Similarity=0.052 Sum_probs=89.5
Q ss_pred cccCCCCCceEEcCCC-ccccc-----cCcc-ccCCCCeEeCCCCCCCC-----cchhccCCCCCcEEEcCCCccccccC
Q psy3781 47 DLLNLRHLVYMNLENN-KLETI-----DIDF-NFGHLRELNLSSNKFQQ-----IPKCIFHLDNLEILILNNNDIEEINQ 114 (183)
Q Consensus 47 ~~~~~~~L~~L~l~~n-~l~~~-----~~~~-~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~l~l~~n~~~~~~~ 114 (183)
.+...+.|++|++++| .+..- ...+ ..++|++|++++|.++. +...+...++|+.|++++|.+.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3556889999999999 88743 2222 56789999999999982 44455567899999999999987541
Q ss_pred ---chhhhcCCCccEEeC--CCCCCcc-----CChhccccCcccEEeccCCcCCCCc
Q psy3781 115 ---PEKLVKMQKLTVLDL--SNNNIRK-----IPYELGLAQQLHHLNLVGNCFKYPR 161 (183)
Q Consensus 115 ---~~~~~~~~~L~~l~l--~~n~l~~-----~~~~~~~~~~L~~l~l~~n~~~~~~ 161 (183)
...+...+.|++|++ ++|.+.+ +...+...++|+.|++++|.+...+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 344556788999999 8899983 5556778899999999999876543
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.63 E-value=4.2e-08 Score=72.92 Aligned_cols=151 Identities=13% Similarity=0.177 Sum_probs=99.2
Q ss_pred CCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCC-CCcccc--CCCCCceEEcCC--Cc------cccccCcc
Q psy3781 3 AKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQN-LPPDLL--NLRHLVYMNLEN--NK------LETIDIDF 71 (183)
Q Consensus 3 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~-l~~~~~--~~~~L~~L~l~~--n~------l~~~~~~~ 71 (183)
..+++|+.|++.++.-..+++ + .+++|+.|.+..+.++. ....+. .+++|++|+++. +. +..+...+
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred hcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 457899999998873223443 2 47899999999988762 112232 689999999853 11 22222222
Q ss_pred ---ccCCCCeEeCCCCCCCC-cchhc---cCCCCCcEEEcCCCccccccC---chhhhcCCCccEEeCCCCCCccC-Chh
Q psy3781 72 ---NFGHLRELNLSSNKFQQ-IPKCI---FHLDNLEILILNNNDIEEINQ---PEKLVKMQKLTVLDLSNNNIRKI-PYE 140 (183)
Q Consensus 72 ---~~~~L~~L~l~~~~~~~-~~~~~---~~~~~L~~l~l~~n~~~~~~~---~~~~~~~~~L~~l~l~~n~l~~~-~~~ 140 (183)
.+++|++|++.+|.++. .+..+ ..+++|+.|+++.|.+.+.+. ...+..+++|+.|++++|.+++- ...
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~ 326 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE 326 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHH
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHH
Confidence 47899999999998872 22222 247899999999999987541 12234578999999999988732 222
Q ss_pred ccccCcccEEeccCCc
Q psy3781 141 LGLAQQLHHLNLVGNC 156 (183)
Q Consensus 141 ~~~~~~L~~l~l~~n~ 156 (183)
+...- -..++++++.
T Consensus 327 l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 327 LQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHHHC-CSEEECCSBC
T ss_pred HHHHc-CCEEEecCCc
Confidence 32211 2457887765
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.56 E-value=3e-08 Score=70.49 Aligned_cols=62 Identities=29% Similarity=0.407 Sum_probs=27.2
Q ss_pred cCCCCeEeCCCCCCCCcc---hhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc
Q psy3781 73 FGHLRELNLSSNKFQQIP---KCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR 135 (183)
Q Consensus 73 ~~~L~~L~l~~~~~~~~~---~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~ 135 (183)
+++|++|++++|+++.++ ..+..+++|+.|++++|.+++......+..+ +|+.|++.+|.++
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence 444555555555554332 2222345555555555555443211222222 4555555555544
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.54 E-value=1.5e-06 Score=64.79 Aligned_cols=135 Identities=15% Similarity=0.300 Sum_probs=90.2
Q ss_pred CCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCCCcch-hccCCCCCcEEE
Q psy3781 28 ITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQIPK-CIFHLDNLEILI 103 (183)
Q Consensus 28 ~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~ 103 (183)
+.+++.+.+..+ ++.+.. .|..+..|+.+.+..+ ++.++..+ .+.+++.+.+..+ +..++. .+..+.+|+.+.
T Consensus 216 ~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 216 GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEE
T ss_pred ccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccc
Confidence 345555555433 333322 3556677888877664 66666655 6677888877543 555544 455678888888
Q ss_pred cCCCccccccCchhhhcCCCccEEeCCCCCCccCCh-hccccCcccEEeccCCcCCCCcHHHhhhC
Q psy3781 104 LNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY-ELGLAQQLHHLNLVGNCFKYPRQDILQKG 168 (183)
Q Consensus 104 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 168 (183)
+.++.++.++ ...|.++.+|+.+.+..+ ++.+.. ++.+|++|+.+.+..+ ++.++...|.+.
T Consensus 293 l~~~~i~~I~-~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 293 MDNSAIETLE-PRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp ECCTTCCEEC-TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred ccccccceeh-hhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 8888888777 778888888998888654 666654 4788888888888654 666666666554
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.47 E-value=1.7e-06 Score=64.91 Aligned_cols=143 Identities=15% Similarity=0.150 Sum_probs=95.0
Q ss_pred CCCccEEecCCCcceecccccc-cCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeC
Q psy3781 5 EAQVEQADLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNL 81 (183)
Q Consensus 5 ~~~l~~l~l~~~~i~~l~~~~~-~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l 81 (183)
+..++.+.+.+. +..+....+ .+..++.+.+..+...--...|.....++.+...... ++... .+.+|+.+.+
T Consensus 229 ~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 229 KTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKL 304 (394)
T ss_dssp TCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEE
T ss_pred cCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee---ecccccccccccccccc
Confidence 456777766543 344444444 6778888888776443333346667777777766543 33333 6778888887
Q ss_pred CCCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh-hccccCcccEEeccCC
Q psy3781 82 SSNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY-ELGLAQQLHHLNLVGN 155 (183)
Q Consensus 82 ~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~L~~l~l~~n 155 (183)
..+ +..++. .+..+.+|+.+++..+ ++.++ ...|.++.+|+.+.+..+ ++.+.. ++.+|.+|+.+++..+
T Consensus 305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~-~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIG-KRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC-TTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccc-cceechhhhcCCCCCCEEEeCCc-ccEEh-HHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 654 666654 4556788888888643 66676 677888888888888766 666654 4788888888888654
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.40 E-value=5.2e-06 Score=61.86 Aligned_cols=138 Identities=11% Similarity=0.213 Sum_probs=99.9
Q ss_pred CCCCCccEEecCCCcceecccccc-cCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCCe
Q psy3781 3 AKEAQVEQADLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLRE 78 (183)
Q Consensus 3 ~~~~~l~~l~l~~~~i~~l~~~~~-~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~ 78 (183)
..+.+++.+.+..+ +..+....+ .+..|+.+.+..+ ++.+... |..+.+++.+.+..+ +..++... .+.+|+.
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 44556666666543 444444443 6789999998775 6666554 667888999998654 67777766 7889999
Q ss_pred EeCCCCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh-hccccCc
Q psy3781 79 LNLSSNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY-ELGLAQQ 146 (183)
Q Consensus 79 L~l~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~ 146 (183)
+.+.++.++.++. .+..+.+|+.+.+..+ ++.++ ...|.+|.+|+.+.+..+ ++.+.. ++.+++.
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~-~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQ-VYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEEC-TTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEH-HHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 9999988988865 5567899999999754 77776 788999999999988654 665543 3555543
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.40 E-value=1.6e-05 Score=59.57 Aligned_cols=80 Identities=16% Similarity=0.357 Sum_probs=45.5
Q ss_pred ccCCCCeEeCCCCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh-hccccCcccE
Q psy3781 72 NFGHLRELNLSSNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY-ELGLAQQLHH 149 (183)
Q Consensus 72 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~L~~ 149 (183)
.+..|+.+.+. +.+..++. .+..+.+|+.+++..+ ++.++ ...|.+|.+|+.+.+..+ ++.+.. ++.+|++|+.
T Consensus 286 ~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~-~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 286 NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQIL-DDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNN 361 (394)
T ss_dssp TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEEC-TTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCE
T ss_pred cccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEeh-HhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCE
Confidence 34445555443 23444433 3334566777766543 55554 566666777777776543 555543 3667777777
Q ss_pred EeccCC
Q psy3781 150 LNLVGN 155 (183)
Q Consensus 150 l~l~~n 155 (183)
+++.++
T Consensus 362 i~~~~~ 367 (394)
T 4gt6_A 362 IEYSGS 367 (394)
T ss_dssp EEESSC
T ss_pred EEECCc
Confidence 777665
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.31 E-value=1.4e-07 Score=67.04 Aligned_cols=78 Identities=29% Similarity=0.374 Sum_probs=48.3
Q ss_pred CCCCCceEEcCCCccccccC---cc-ccCCCCeEeCCCCCCCCcchhccCCC--CCcEEEcCCCccccccC------chh
Q psy3781 50 NLRHLVYMNLENNKLETIDI---DF-NFGHLRELNLSSNKFQQIPKCIFHLD--NLEILILNNNDIEEINQ------PEK 117 (183)
Q Consensus 50 ~~~~L~~L~l~~n~l~~~~~---~~-~~~~L~~L~l~~~~~~~~~~~~~~~~--~L~~l~l~~n~~~~~~~------~~~ 117 (183)
.+++|+.|++++|.++.++. .+ .+++|+.|++++|.++.+.. +..+. +|+.|++.+|.+.+... ...
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 46677777777777765543 22 66777777777777775522 22222 77888888887764210 134
Q ss_pred hhcCCCccEEe
Q psy3781 118 LVKMQKLTVLD 128 (183)
Q Consensus 118 ~~~~~~L~~l~ 128 (183)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 56677888775
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.29 E-value=1.5e-05 Score=59.74 Aligned_cols=125 Identities=10% Similarity=0.197 Sum_probs=85.6
Q ss_pred cCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCCCcch-hccCCCCCcEEE
Q psy3781 27 DITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQIPK-CIFHLDNLEILI 103 (183)
Q Consensus 27 ~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~ 103 (183)
++..|+.+.+.....+--...|..+..|+.+.+. +.++.++..+ .+.+|+.+.+..+ ++.+.. .+..+.+|+.+.
T Consensus 263 ~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA 340 (394)
T ss_dssp TCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred ecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence 5677888887655332222346778899999986 4577888776 7789999999764 777755 566689999999
Q ss_pred cCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcC
Q psy3781 104 LNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCF 157 (183)
Q Consensus 104 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~ 157 (183)
+..+ ++.++ ...|.+|++|+.+.+.++.... ..+..+..|+.+.+..+.+
T Consensus 341 ip~s-v~~I~-~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 341 IPSS-VTKIP-ESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp ECTT-CCBCC-GGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC----------
T ss_pred ECcc-cCEEh-HhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCCE
Confidence 9654 77777 7889999999999999875331 3466778888888776543
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=4.2e-07 Score=60.45 Aligned_cols=60 Identities=18% Similarity=0.179 Sum_probs=25.0
Q ss_pred CCCCCcEEEcCCCc-cccccCchhhhcC----CCccEEeCCCCC-CccC-ChhccccCcccEEeccCC
Q psy3781 95 HLDNLEILILNNND-IEEINQPEKLVKM----QKLTVLDLSNNN-IRKI-PYELGLAQQLHHLNLVGN 155 (183)
Q Consensus 95 ~~~~L~~l~l~~n~-~~~~~~~~~~~~~----~~L~~l~l~~n~-l~~~-~~~~~~~~~L~~l~l~~n 155 (183)
.+++|+.|++++|. +++.+ ...++.. ++|+.|++++|. +|+- -..+..+++|+.|+++++
T Consensus 83 ~~~~L~~L~L~~C~~ItD~g-L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGC-LERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHH-HHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCCCCCEEEeCCCCccCHHH-HHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 34445555554442 44433 2233321 244555555442 4421 122344455555555544
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.26 E-value=2.3e-05 Score=58.75 Aligned_cols=159 Identities=16% Similarity=0.196 Sum_probs=103.6
Q ss_pred CCCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCccccccCcc--ccCCCC
Q psy3781 1 MIAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDIDF--NFGHLR 77 (183)
Q Consensus 1 ~l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~ 77 (183)
+|..+..|+.+.+..+. ..+....+....++.+.+... ++.+.. .+..+..++.+.+..+.. .+.... .+..++
T Consensus 203 ~F~~~~~L~~i~~~~~~-~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~ 279 (394)
T 4fs7_A 203 CFAECILLENMEFPNSL-YYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLK 279 (394)
T ss_dssp TTTTCTTCCBCCCCTTC-CEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCC
T ss_pred hhccccccceeecCCCc-eEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccc
Confidence 35566677776665542 233444455667888877653 344433 356677888888877643 344433 666777
Q ss_pred eEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCC-hhccccCcccEEeccCCc
Q psy3781 78 ELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIP-YELGLAQQLHHLNLVGNC 156 (183)
Q Consensus 78 ~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~-~~~~~~~~L~~l~l~~n~ 156 (183)
.+......+.. ..+..+.+|+.+.+..+ ++.++ ...|.++.+|+.+++..+ ++.+. .++.+|.+|+.+.+..+
T Consensus 280 ~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~-~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~- 353 (394)
T 4fs7_A 280 KVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIG-EEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS- 353 (394)
T ss_dssp EEEECSSEECT--TTTTTCTTCCEEEECTT-CCEEC-TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-
T ss_pred eeccCceeecc--ccccccccccccccccc-cceec-hhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-
Confidence 77665543221 24456778888888654 66666 677888899999988644 67665 34788889999988766
Q ss_pred CCCCcHHHhhhC
Q psy3781 157 FKYPRQDILQKG 168 (183)
Q Consensus 157 ~~~~~~~~~~~~ 168 (183)
++.++..+|...
T Consensus 354 l~~I~~~aF~~C 365 (394)
T 4fs7_A 354 LRKIGANAFQGC 365 (394)
T ss_dssp CCEECTTTBTTC
T ss_pred ccEehHHHhhCC
Confidence 777777777664
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.21 E-value=8.2e-07 Score=59.03 Aligned_cols=92 Identities=13% Similarity=0.196 Sum_probs=68.5
Q ss_pred CCccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCC-CCCc-chhccCC----CCCcEEEcCCCc-cccccC
Q psy3781 44 LPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNK-FQQI-PKCIFHL----DNLEILILNNND-IEEINQ 114 (183)
Q Consensus 44 l~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~-~~~~-~~~~~~~----~~L~~l~l~~n~-~~~~~~ 114 (183)
+|.....--.|+.|++++|.+++..-.. .+++|++|++++|. ++.- -..+..+ ++|+.|++++|. +++.+
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G- 131 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG- 131 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-
Confidence 3443333457999999999988654433 88999999999994 6621 1233332 479999999985 99887
Q ss_pred chhhhcCCCccEEeCCCCC-Ccc
Q psy3781 115 PEKLVKMQKLTVLDLSNNN-IRK 136 (183)
Q Consensus 115 ~~~~~~~~~L~~l~l~~n~-l~~ 136 (183)
...+..+++|+.|+++++. +++
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 6777889999999999985 664
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.08 E-value=2.5e-06 Score=57.76 Aligned_cols=108 Identities=16% Similarity=0.192 Sum_probs=74.8
Q ss_pred cCCCccEEEcCCC-cCC-----CCCccccCCCCCceEEcCCCccccccCcc------ccCCCCeEeCCCCCCC-----Cc
Q psy3781 27 DITSIRELDLSHN-LIQ-----NLPPDLLNLRHLVYMNLENNKLETIDIDF------NFGHLRELNLSSNKFQ-----QI 89 (183)
Q Consensus 27 ~~~~l~~l~l~~~-~l~-----~l~~~~~~~~~L~~L~l~~n~l~~~~~~~------~~~~L~~L~l~~~~~~-----~~ 89 (183)
.-+.|+.|+++++ .+. .+...+...+.|+.|++++|.+.+..... .-..|++|++++|.++ .+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4568889999885 766 24444666778999999999888443322 5568999999999988 34
Q ss_pred chhccCCCCCcEEEcCCC---cccccc---CchhhhcCCCccEEeCCCCCC
Q psy3781 90 PKCIFHLDNLEILILNNN---DIEEIN---QPEKLVKMQKLTVLDLSNNNI 134 (183)
Q Consensus 90 ~~~~~~~~~L~~l~l~~n---~~~~~~---~~~~~~~~~~L~~l~l~~n~l 134 (183)
...+.....|+.|+++++ .+.+.+ ....+..-+.|..++++.+.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 455666778999999765 444322 133445567889998876654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.01 E-value=6.7e-06 Score=55.66 Aligned_cols=110 Identities=12% Similarity=0.128 Sum_probs=81.4
Q ss_pred ccCCCCCceEEcCCC-cccccc-----Ccc-ccCCCCeEeCCCCCCC-----CcchhccCCCCCcEEEcCCCccccccCc
Q psy3781 48 LLNLRHLVYMNLENN-KLETID-----IDF-NFGHLRELNLSSNKFQ-----QIPKCIFHLDNLEILILNNNDIEEINQP 115 (183)
Q Consensus 48 ~~~~~~L~~L~l~~n-~l~~~~-----~~~-~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 115 (183)
+..-+.|+.|+++++ .+.+-. ..+ .-..|++|++++|.++ .+...+....+|+.|++++|.|.+.+ .
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G-a 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL-L 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH-H
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH-H
Confidence 345678999999985 776422 222 5678999999999998 45566667889999999999998765 3
Q ss_pred hh----hhcCCCccEEeCCCCC---Cc-----cCChhccccCcccEEeccCCcCC
Q psy3781 116 EK----LVKMQKLTVLDLSNNN---IR-----KIPYELGLAQQLHHLNLVGNCFK 158 (183)
Q Consensus 116 ~~----~~~~~~L~~l~l~~n~---l~-----~~~~~~~~~~~L~~l~l~~n~~~ 158 (183)
.. +..-+.|+.|+++++. +. .+...+...++|+.|+++.|.+.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 33 3344679999998653 33 34555778899999999876543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.74 E-value=0.0001 Score=46.55 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=26.6
Q ss_pred eEeCCCCCCC--CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc
Q psy3781 78 ELNLSSNKFQ--QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR 135 (183)
Q Consensus 78 ~L~l~~~~~~--~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~ 135 (183)
.++.++++++ .+|..+. ++++.|++++|.++.+. ...|..+++|+.|++.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALP-PGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCC-TTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccC-hhhhhhccccCEEEecCCCee
Confidence 4444444444 4443322 24555555555555554 444445555555555555443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.71 E-value=0.0001 Score=46.49 Aligned_cols=53 Identities=26% Similarity=0.263 Sum_probs=26.9
Q ss_pred EEecCCCcce--ecccccccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCcc
Q psy3781 10 QADLSYNRLH--VVNSKLFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKL 64 (183)
Q Consensus 10 ~l~l~~~~i~--~l~~~~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l 64 (183)
.++.+++.++ .+|..+. .+++.|+|++|+|+.++.. |..+++|++|++.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555555 5554431 2455555555555555443 33455555555555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=83.14 E-value=1.8 Score=25.50 Aligned_cols=37 Identities=14% Similarity=0.056 Sum_probs=18.6
Q ss_pred ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCC
Q psy3781 93 IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131 (183)
Q Consensus 93 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~ 131 (183)
+..+.+|+.+.+..+ ++.++ ...|.+|.+|+.+.+.+
T Consensus 16 F~~c~~L~~i~iP~~-v~~Ig-~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLLY-DGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCCC-TTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCc-hheEc-HHHHhccCCccEEEEcC
Confidence 334555555555432 33443 44555555555555544
Done!