RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3781
(183 letters)
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 56.0 bits (135), Expect = 1e-09
Identities = 54/150 (36%), Positives = 76/150 (50%), Gaps = 9/150 (6%)
Query: 13 LSYNRLH-VVNSKLFDITSIRELDLSHN-LIQNLPPDLLNLRHLVYMNLENNKLETIDID 70
L YN L + ++ +TS+ LDL +N L +P L NL++L Y+ L NKL + I
Sbjct: 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL-SGPIP 277
Query: 71 ---FNFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
F+ L L+LS N +IP+ + L NLEIL L +N+ P L + +L V
Sbjct: 278 PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG-KIPVALTSLPRLQV 336
Query: 127 LDL-SNNNIRKIPYELGLAQQLHHLNLVGN 155
L L SN +IP LG L L+L N
Sbjct: 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366
Score = 49.1 bits (117), Expect = 3e-07
Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 12 DLSYNRLH-VVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKL-ETIDI 69
D+S N L +NS+ +D+ S++ L L+ N PD + L ++L N+ +
Sbjct: 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR 493
Query: 70 DF-NFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIE-EINQPEKLVKMQKLTV 126
+ L +L LS NK +IP + L L L++N + +I P +M L+
Sbjct: 494 KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI--PASFSEMPVLSQ 551
Query: 127 LDLSNNNIR-KIPYELGLAQQLHHLNLVGNCF 157
LDLS N + +IP LG + L +N+ N
Sbjct: 552 LDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583
Score = 39.1 bits (91), Expect = 7e-04
Identities = 46/136 (33%), Positives = 64/136 (47%), Gaps = 11/136 (8%)
Query: 27 DITSIRELDLS-HNLIQNLPPDLLNLRHLVYMNLENNKLE---TIDIDFNFGHLRELNLS 82
+ + + +DLS N+ + + L ++ +NL NN+L DI LR LNLS
Sbjct: 67 NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126
Query: 83 SNKFQ-QIPKCIFHLDNLEILILNNNDIE-EINQPEKLVKMQKLTVLDLSNNNIR-KIPY 139
+N F IP+ + NLE L L+NN + EI P + L VLDL N + KIP
Sbjct: 127 NNNFTGSIPRG--SIPNLETLDLSNNMLSGEI--PNDIGSFSSLKVLDLGGNVLVGKIPN 182
Query: 140 ELGLAQQLHHLNLVGN 155
L L L L N
Sbjct: 183 SLTNLTSLEFLTLASN 198
Score = 38.7 bits (90), Expect = 0.001
Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 41/177 (23%)
Query: 29 TSIRELDLSHN-LIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLREL-------- 79
+S++ LDL N L+ +P L NL L ++ L +N+L I G ++ L
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL-VGQIPRELGQMKSLKWIYLGYN 222
Query: 80 NLS--------------------SNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLV 119
NLS +N IP + +L NL+ L L N + P +
Sbjct: 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG-PIPPSIF 281
Query: 120 KMQKLTVLDLSNNNIR-KIPYELGLAQQLHHLNLVGNCF---------KYPRQDILQ 166
+QKL LDLS+N++ +IP + Q L L+L N F PR +LQ
Sbjct: 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQ 338
Score = 36.0 bits (83), Expect = 0.008
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 37 SHNLIQNLPPDLLNLRHLVYMNLENNKL--ETIDIDFNFGHLRELNLSSNKFQ-QIPKCI 93
S+ +P +L +L ++L N L E + + G+L +L L SN + +IPK +
Sbjct: 341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400
Query: 94 FHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR-KIPYELGLAQQLHHLNL 152
+L + L +N P + K+ + LD+SNNN++ +I L L+L
Sbjct: 401 GACRSLRRVRLQDNSFSG-ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459
Query: 153 VGNCF 157
N F
Sbjct: 460 ARNKF 464
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 53.0 bits (127), Expect = 1e-08
Identities = 44/129 (34%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 29 TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETI--DIDFNFGHLRELNLSSNKF 86
+ LDL+ N +++ +LL L +L ++L+NN + I I +L+EL+LS NK
Sbjct: 93 LPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI 152
Query: 87 QQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQ 146
+ +P + +L NL+ L L+ ND+ ++ P+ L + L LDLS N I +P E+ L
Sbjct: 153 ESLPSPLRNLPNLKNLDLSFNDLSDL--PKLLSNLSNLNNLDLSGNKISDLPPEIELLSA 210
Query: 147 LHHLNLVGN 155
L L+L N
Sbjct: 211 LEELDLSNN 219
Score = 50.7 bits (121), Expect = 8e-08
Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 4/153 (2%)
Query: 5 EAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNL-RHLVYMNLENNK 63
+ DL+ NRL S+L ++T++ LDL +N I ++PP + L +L ++L +NK
Sbjct: 92 LLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK 151
Query: 64 LETIDID-FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQ 122
+E++ N +L+ L+LS N +PK + +L NL L L+ N I ++ P ++ +
Sbjct: 152 IESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDL--PPEIELLS 209
Query: 123 KLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
L LDLSNN+I ++ L + L L L N
Sbjct: 210 ALEELDLSNNSIIELLSSLSNLKNLSGLELSNN 242
Score = 45.7 bits (108), Expect = 4e-06
Identities = 51/142 (35%), Positives = 77/142 (54%), Gaps = 4/142 (2%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNK-LETIDID 70
DLS+N L + L +++++ LDLS N I +LPP++ L L ++L NN +E +
Sbjct: 169 DLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSL 228
Query: 71 FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLS 130
N +L L LS+NK + +P+ I +L NLE L L+NN I I+ L + L LDLS
Sbjct: 229 SNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS---SLGSLTNLRELDLS 285
Query: 131 NNNIRKIPYELGLAQQLHHLNL 152
N++ + L L L L
Sbjct: 286 GNSLSNALPLIALLLLLLELLL 307
Score = 33.8 bits (77), Expect = 0.041
Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 3/144 (2%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
DLS N + + S L ++ ++ L+LS+N +++LP + NL +L ++L NN++ +I
Sbjct: 215 DLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLG 274
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
+ +LREL+LS N I L L L+LN + +L L ++ +
Sbjct: 275 SLTNLRELDLSGNSLSNALPLIALLLLLLELLLNL---LLTLKALELKLNSILLNNNILS 331
Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
N P L + + L++L + N
Sbjct: 332 NGETSSPEALSILESLNNLWTLDN 355
Score = 32.6 bits (74), Expect = 0.091
Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 5/151 (3%)
Query: 6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLE 65
+ + DLS N++ + ++ ++++ ELDLS+N I L L NL++L + L NNKLE
Sbjct: 186 SNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE 245
Query: 66 -TIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKL 124
+ N +L L+LS+N+ I + L NL L L+ N + L+ + L
Sbjct: 246 DLPESIGNLSNLETLDLSNNQISSIS-SLGSLTNLRELDLSGNSLSNA---LPLIALLLL 301
Query: 125 TVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
+ L N + EL L L + N++ N
Sbjct: 302 LLELLLNLLLTLKALELKLNSILLNNNILSN 332
Score = 26.5 bits (58), Expect = 8.9
Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 1/107 (0%)
Query: 1 MIAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLE 60
++ + +LS N+L + + +++++ LDLS+N I ++ L +L +L ++L
Sbjct: 227 SLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLS 285
Query: 61 NNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNN 107
N L L L + + L + +N
Sbjct: 286 GNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSN 332
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 44.8 bits (107), Expect = 4e-07
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 75 HLRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNN 133
+L+ L+LS+N+ IP F L NL++L L+ N++ I+ PE + L LDLS NN
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSIS-PEAFSGLPSLRSLDLSGNN 59
Query: 134 I 134
+
Sbjct: 60 L 60
Score = 41.0 bits (97), Expect = 1e-05
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 30 SIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDID--FNFGHLRELNLSSNKF 86
+++ LDLS+N + +P L +L ++L N L +I + LR L+LS N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 37.1 bits (87), Expect = 3e-04
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKL 64
DLS NRL V+ F + +++ LDLS N + ++ P+ L L ++L N L
Sbjct: 6 DLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 36.0 bits (84), Expect = 9e-04
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 53 HLVYMNLENNKLETIDID--FNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDI 109
+L ++L NN+L I +L+ L+LS N I F L +L L L+ N++
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 35.2 bits (82), Expect = 0.002
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 98 NLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
NL+ L L+NN + I + L VLDLS NN+ I E GL L L+L GN
Sbjct: 1 NLKSLDLSNNRLTVIP-DGAFKGLPNLKVLDLSGNNLTSISPEAFSGL-PSLRSLDLSGN 58
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 41.3 bits (97), Expect = 1e-04
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 44 LPPDLLNLRHLVYMNLENNKLETIDIDFNFGH---LRELNLSSNKFQ-QIPKCIFHLDNL 99
+P D+ LRHL +NL N + +I + G L L+LS N F IP+ + L +L
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492
Query: 100 EILILNNN 107
IL LN N
Sbjct: 493 RILNLNGN 500
Score = 41.3 bits (97), Expect = 1e-04
Identities = 28/69 (40%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 88 QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR-KIPYELGLAQQ 146
IP I L +L+ + L+ N I N P L + L VLDLS N+ IP LG
Sbjct: 433 FIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491
Query: 147 LHHLNLVGN 155
L LNL GN
Sbjct: 492 LRILNLNGN 500
Score = 33.3 bits (76), Expect = 0.058
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 2 IAKEAQVEQADLSYNRLH-VVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNL 59
I+K ++ +LS N + + L ITS+ LDLS+N P+ L L L +NL
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497
Query: 60 ENNKL 64
N L
Sbjct: 498 NGNSL 502
Score = 30.6 bits (69), Expect = 0.51
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 115 PEKLVKMQKLTVLDLSNNNIR-KIPYELGLAQQLHHLNLVGNCF 157
P + K++ L ++LS N+IR IP LG L L+L N F
Sbjct: 435 PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 40.8 bits (95), Expect = 2e-04
Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 8 VEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETI 67
+++ +LS NR+ + +L ++++ LDL HN I LP +L L Y+++ +N + T+
Sbjct: 243 IQEMELSINRITELPERL--PSALQSLDLFHNKISCLPENLPE--ELRYLSVYDNSIRTL 298
Query: 68 DIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
G + LN+ SN +P+ + L+ L N + + P L +L VL
Sbjct: 299 PAHLPSG-ITHLNVQSNSLTALPETL--PPGLKTLEAGENALTSL--PASLPP--ELQVL 351
Query: 128 DLSNNNIRKIPYEL 141
D+S N I +P L
Sbjct: 352 DVSKNQITVLPETL 365
Score = 27.7 bits (61), Expect = 4.1
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDL 48
D+S N++ V+ L +I LD+S N + NLP +L
Sbjct: 352 DVSKNQITVLPETL--PPTITTLDVSRNALTNLPENL 386
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 34.0 bits (79), Expect = 0.003
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 98 NLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIP 138
NLE L L+NN I ++ L + L LDLS N I +
Sbjct: 2 NLETLDLSNNQITDLP---PLSNLPNLETLDLSGNKITDLS 39
Score = 31.3 bits (72), Expect = 0.023
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 75 HLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEK 117
+L L+LS+N+ +P + +L NLE L L+ N I +++
Sbjct: 2 NLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLSPLSN 43
Score = 31.3 bits (72), Expect = 0.026
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 29 TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETID 68
T++ LDLS+N I +LPP L NL +L ++L NK+ +
Sbjct: 1 TNLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLS 39
Score = 26.7 bits (60), Expect = 1.1
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 53 HLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIP 90
+L ++L NN++ + N +L L+LS NK +
Sbjct: 2 NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLS 39
Score = 26.7 bits (60), Expect = 1.4
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 122 QKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
L LDLSNN I +P L L L+L GN
Sbjct: 1 TNLETLDLSNNQITDLPPLSNL-PNLETLDLSGN 33
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 35.8 bits (83), Expect = 0.007
Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 26/155 (16%)
Query: 28 ITSIRELDLSHN---------LIQNLPPDLLNLRHLV--YMNLENNKLETIDIDFNF-GH 75
+S++EL L++N L + L L LV LE E +
Sbjct: 107 SSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRD 166
Query: 76 LRELNLSSNK-----FQQIPKCIFHLDNLEILILNNNDIEEINQ---PEKLVKMQKLTVL 127
L+ELNL++N + + + + NLE+L LNNN + + E L ++ L VL
Sbjct: 167 LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVL 226
Query: 128 DLSNNNIR-KIPYEL-----GLAQQLHHLNLVGNC 156
+L +NN+ L L L+L N
Sbjct: 227 NLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261
Score = 34.6 bits (80), Expect = 0.018
Identities = 35/146 (23%), Positives = 52/146 (35%), Gaps = 25/146 (17%)
Query: 12 DLSYNRLHVVNSK-----LFDITSIRELDLSHN-----LIQNLPPDLLNLRHLVYMNLEN 61
L NRL + + L ++EL+L++N I+ L L +L ++L N
Sbjct: 143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN 202
Query: 62 NKLETIDIDF------NFGHLRELNLSSNKFQQIPKCIFHLDNLEILI------LNNNDI 109
N L + L LNL N L I L+ NDI
Sbjct: 203 NGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262
Query: 110 EE---INQPEKLVKMQKLTVLDLSNN 132
+ + E L + + L LDL N
Sbjct: 263 TDDGAKDLAEVLAEKESLLELDLRGN 288
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 28.5 bits (65), Expect = 0.18
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 74 GHLRELNLSSNKFQQIPKCIFH 95
+LREL+LS+N+ +P F
Sbjct: 2 PNLRELDLSNNQLSSLPPGAFQ 23
Score = 26.5 bits (60), Expect = 1.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 121 MQKLTVLDLSNNNIRKIP 138
+ L LDLSNN + +P
Sbjct: 1 LPNLRELDLSNNQLSSLP 18
Score = 25.8 bits (58), Expect = 1.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 29 TSIRELDLSHNLIQNLPPDLLN 50
++RELDLS+N + +LPP
Sbjct: 2 PNLRELDLSNNQLSSLPPGAFQ 23
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most
populated) subfamily.
Length = 24
Score = 28.5 bits (65), Expect = 0.18
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 74 GHLRELNLSSNKFQQIPKCIFH 95
+LREL+LS+N+ +P F
Sbjct: 2 PNLRELDLSNNQLSSLPPGAFQ 23
Score = 26.5 bits (60), Expect = 1.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 121 MQKLTVLDLSNNNIRKIP 138
+ L LDLSNN + +P
Sbjct: 1 LPNLRELDLSNNQLSSLP 18
Score = 25.8 bits (58), Expect = 1.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 29 TSIRELDLSHNLIQNLPPDLLN 50
++RELDLS+N + +LPP
Sbjct: 2 PNLRELDLSNNQLSSLPPGAFQ 23
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
Length = 1153
Score = 31.8 bits (72), Expect = 0.18
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 30 SIRELDLSHN-LIQNLPPDLLNLRHLVYMNLENNK-LETIDIDFNFGHLRELNLSS-NKF 86
S+ L LS + LP + NL L ++ +EN LET+ N L L+LS ++
Sbjct: 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRL 838
Query: 87 QQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNN 133
+ P N+ L L+ IEE+ P + K L+ LD++ N
Sbjct: 839 RTFPDIS---TNISDLNLSRTGIEEV--PWWIEKFSNLSFLDMNGCN 880
>gnl|CDD|181061 PRK07631, PRK07631, amidophosphoribosyltransferase; Provisional.
Length = 475
Score = 30.2 bits (68), Expect = 0.63
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 137 IPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLR 177
IPYELGL + + VG F P Q + ++G LS +R
Sbjct: 307 IPYELGLIKNRY----VGRTFIQPSQALREQGVKMKLSPVR 343
>gnl|CDD|235735 PRK06195, PRK06195, DNA polymerase III subunit epsilon; Validated.
Length = 309
Score = 27.8 bits (62), Expect = 3.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 101 ILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR 135
L+ N DIE++N+ E K++K L NI+
Sbjct: 261 YLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIK 295
>gnl|CDD|233685 TIGR02013, rpoB, DNA-directed RNA polymerase, beta subunit. This
model describes orthologs of the beta subunit of
Bacterial RNA polymerase. The core enzyme consists of
two alpha chains, one beta chain, and one beta' subunit
[Transcription, DNA-dependent RNA polymerase].
Length = 1065
Score = 27.7 bits (62), Expect = 4.2
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 22 NSKLFDITSIRELDLSHNLIQNLPPDLLNLRH-------LVYMNLENNKLETIDIDFNFG 74
+ K +D+ + ++ L ++P D+ L + L N K E DID + G
Sbjct: 267 DPKRYDLGRVGRYKMNKKLGLDVPEDIGVLTKEDIIATIKYLIKLRNGKGEVDDID-HLG 325
Query: 75 HLR 77
+ R
Sbjct: 326 NRR 328
>gnl|CDD|130619 TIGR01556, rhamnosyltran, L-rhamnosyltransferase. This model
subfamily is comprised of gamma proteobacteria whose
proteins function as L-rhamnosyltransferases in the
synthesis of their respective surface polysaccharides.
Rhamnolipids are glycolipids containing mono- or di-
L-rhamnose molecules. Rhamnolipid synthesis occurs by
sequential glycosyltransferase reactions involving two
distinct rhamnosyltransferase enzymes. In P.aeruginosa,
the synthesis of mono-rhamnolipids is catalyzed by
rhamnosyltransferase 1, and proceeds by a
glycosyltransfer reaction catalyzed by
rhamnosyltransferase 2 to yield di-rhamnolipids [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 281
Score = 27.4 bits (61), Expect = 4.5
Identities = 6/35 (17%), Positives = 17/35 (48%)
Query: 98 NLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNN 132
I+ ++N+ + ++ QK+ ++ L +N
Sbjct: 21 VDRIIAVDNSPHSDQPLKNARLRGQKIALIHLGDN 55
>gnl|CDD|201305 pfam00560, LRR_1, Leucine Rich Repeat. CAUTION: This Pfam may
not find all Leucine Rich Repeats in a protein. Leucine
Rich Repeats are short sequence motifs present in a
number of proteins with diverse functions and cellular
locations. These repeats are usually involved in
protein-protein interactions. Each Leucine Rich Repeat
is composed of a beta-alpha unit. These units form
elongated non-globular structures. Leucine Rich Repeats
are often flanked by cysteine rich domains.
Length = 22
Score = 24.1 bits (53), Expect = 6.5
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 30 SIRELDLSHNLIQNLPPDLLNL 51
++ ELDLS+N + +LPP L NL
Sbjct: 1 NLEELDLSNNNLSSLPPSLGNL 22
Score = 24.1 bits (53), Expect = 7.1
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 75 HLRELNLSSNKFQQIPKCIFHL 96
+L EL+LS+N +P + +L
Sbjct: 1 NLEELDLSNNNLSSLPPSLGNL 22
Score = 24.1 bits (53), Expect = 7.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 123 KLTVLDLSNNNIRKIPYELG 142
L LDLSNNN+ +P LG
Sbjct: 1 NLEELDLSNNNLSSLPPSLG 20
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and
metabolism].
Length = 390
Score = 26.5 bits (59), Expect = 8.6
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNL 59
A+ E+A L V L D+T E I+ P RH+V N
Sbjct: 232 AECEEA---AEFLGVSIKSLRDVTD-EEFAALQAEIEVDPKIARRARHVVTENQ 281
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.139 0.396
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,449,659
Number of extensions: 889042
Number of successful extensions: 840
Number of sequences better than 10.0: 1
Number of HSP's gapped: 783
Number of HSP's successfully gapped: 85
Length of query: 183
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 92
Effective length of database: 6,901,388
Effective search space: 634927696
Effective search space used: 634927696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.0 bits)