RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3781
(183 letters)
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 100 bits (252), Expect = 2e-27
Identities = 12/145 (8%), Positives = 42/145 (28%), Gaps = 3/145 (2%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
Y L + + + ++ +L + + L + L + +L +
Sbjct: 10 QEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAV 69
Query: 72 -NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLS 130
+L + ++ + L L ++ E+ + ++ + + L
Sbjct: 70 GELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTEL--KAAVGELPEKSKLQEI 127
Query: 131 NNNIRKIPYELGLAQQLHHLNLVGN 155
+ ++ +G +
Sbjct: 128 YQELTQLKAAVGELPDQSKQQQIYQ 152
Score = 94.4 bits (236), Expect = 3e-25
Identities = 11/139 (7%), Positives = 39/139 (28%), Gaps = 6/139 (4%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
Y L + + + ++ +L + + L + L + +L +
Sbjct: 33 QEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAV 92
Query: 72 -NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLS 130
+L + ++ + L L ++ ++ + ++ +
Sbjct: 93 GELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQL--KAAVGELPDQSKQQQI 150
Query: 131 NNNIRKIPYELGLAQQLHH 149
+ + +L H
Sbjct: 151 YQELTDLKTAFE---RLGH 166
Score = 92.9 bits (232), Expect = 2e-24
Identities = 10/130 (7%), Positives = 38/130 (29%), Gaps = 3/130 (2%)
Query: 27 DITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNK 85
++ +L + + L + L + +L + +L +
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQE 61
Query: 86 FQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQ 145
++ + L L ++ + + ++ + + L + ++ +G
Sbjct: 62 LTRLKAAVGELPEKSKLQEIYQELTRL--KAAVGELPEKSKLQEIYQELTELKAAVGELP 119
Query: 146 QLHHLNLVGN 155
+ L +
Sbjct: 120 EKSKLQEIYQ 129
Score = 47.1 bits (113), Expect = 3e-07
Identities = 5/63 (7%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Query: 96 LDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
L L ++ + + ++ + + L + ++ +G + L +
Sbjct: 3 LPEKSKLQEIYQELTRL--KAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQ 60
Query: 156 CFK 158
Sbjct: 61 ELT 63
Score = 34.7 bits (81), Expect = 0.007
Identities = 3/39 (7%), Positives = 13/39 (33%)
Query: 120 KMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFK 158
++ + + L + ++ +G + L +
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELT 40
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 99 bits (249), Expect = 6e-25
Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 19/161 (11%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL--------NLRHLVYMNLENN 62
LSYN + ++LF + I + LS+NL+ ++P + L N L ++L N
Sbjct: 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738
Query: 63 KLETIDIDFNFG---HLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQ----- 114
KL ++ DF +L +++S N F P + L+ + + E N+
Sbjct: 739 KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798
Query: 115 PEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
P + L L + +N+IRK+ +L QL+ L++ N
Sbjct: 799 PTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADN 837
Score = 94.9 bits (236), Expect = 3e-23
Identities = 28/177 (15%), Positives = 64/177 (36%), Gaps = 19/177 (10%)
Query: 12 DLSYNRLHVVNSKLFDITSI----------RELDLSHNLIQNLPP--DLLNLRHLVYMNL 59
+++ NR D T + + + +N ++ P L + L ++
Sbjct: 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDC 580
Query: 60 ENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKL 118
+NK+ ++ L +L L N+ ++IP+ D +E L ++N ++ I
Sbjct: 581 VHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNA 640
Query: 119 VKMQKLTVLDLSNNNIRKIPYELGLAQ------QLHHLNLVGNCFKYPRQDILQKGT 169
+ + +D S N I + + + L N + ++ G+
Sbjct: 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697
Score = 90.7 bits (225), Expect = 9e-22
Identities = 24/162 (14%), Positives = 58/162 (35%), Gaps = 18/162 (11%)
Query: 12 DLSYNRLHVVNSKLF--DITSIRELDLSHNLIQNLPPDL------LNLRHLVYMNLENNK 63
S+N+L + + + + +D S+N I + ++ + + L N+
Sbjct: 625 GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684
Query: 64 LETIDIDF--NFGHLRELNLSSNKFQQIPK--------CIFHLDNLEILILNNNDIEEIN 113
++ + + + LS+N IP+ + L + L N + ++
Sbjct: 685 IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS 744
Query: 114 QPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
+ + L+ +D+S N P + + QL +
Sbjct: 745 DDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ 786
Score = 87.2 bits (216), Expect = 1e-20
Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 12/157 (7%)
Query: 12 DLSYNRLHVV--NSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDI 69
+ YN L ++ L + + LD HN +++L L + L+ N++E I
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQIEEIPE 612
Query: 70 DF--NFGHLRELNLSSNKFQQIPKCIF--HLDNLEILILNNNDI----EEINQPEKLVKM 121
DF + L S NK + IP + + + + N I I+ K
Sbjct: 613 DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672
Query: 122 QKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCF 157
+ + LS N I+K P E + + L N
Sbjct: 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709
Score = 81.1 bits (200), Expect = 2e-18
Identities = 30/176 (17%), Positives = 63/176 (35%), Gaps = 33/176 (18%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHN--------------------LIQNLPPDLLNL 51
NR+ ++ + +T ++ + +++ +N NL
Sbjct: 431 GNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL 490
Query: 52 RHLVYMNL-ENNKLETIDIDF-NFGHLRELNLSSNKFQ----------QIPKCIFHLDNL 99
+ L + L + + + L+ LN++ N+ ++ +
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550
Query: 100 EILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
+I + N++EE L KM KL +LD +N +R + G +L L L N
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYN 605
Score = 76.8 bits (189), Expect = 6e-17
Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 22/145 (15%)
Query: 12 DLSYNRL--------HVVNSKLFDITSIRELDLSHNLIQNLPPDLL--NLRHLVYMNLEN 61
LS N + + + + +DL N + +L D L +L M++
Sbjct: 703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSY 762
Query: 62 NKLETIDID-FNFGHLRELNLSSNKF-------QQIPKCIFHLDNLEILILNNNDIEEIN 113
N + N L+ + + +Q P I +L L + +NDI ++
Sbjct: 763 NCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV- 821
Query: 114 QPEKLVKMQKLTVLDLSNNNIRKIP 138
EKL +L +LD+++N I
Sbjct: 822 -DEKL--TPQLYILDIADNPNISID 843
Score = 64.5 bits (157), Expect = 1e-12
Identities = 27/163 (16%), Positives = 51/163 (31%), Gaps = 15/163 (9%)
Query: 13 LSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-------DLLNLRHLVYMNLENNKLE 65
R+H L + DL + I P ++L+ NL N++
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL-TNRIT 438
Query: 66 TIDIDF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKL 124
I L+ + +++ F + D N+ ++ L
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE-----NEELSWSNLKDL 493
Query: 125 TVLDLSNNN-IRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQ 166
T ++L N + ++P L +L LN+ N Q
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD 536
Score = 59.1 bits (143), Expect = 7e-11
Identities = 20/170 (11%), Positives = 51/170 (30%), Gaps = 11/170 (6%)
Query: 24 KLFDITSIRELDLSHN-LIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLS 82
L + + L L+ +P + L L ++ + T+ ++S
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSE-TVSGRLFGDEELTPDMS 376
Query: 83 SNKFQQIPKCIF-----HLDNLEILILNNNDIEEINQPEKLVKMQKL----TVLDLSNNN 133
+ +I + L + L + I + + + K ++ T + N
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR 436
Query: 134 IRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKLPST 183
I I + +L + + F Y + + + + +
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS 486
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 97.5 bits (243), Expect = 3e-24
Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 7/150 (4%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
DL NR+ +N F + EL+L+ N++ + P NL +L + L +N+L+ I +
Sbjct: 38 DLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL 97
Query: 70 DF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
+L +L++S NK + +F L NL+ L + +ND+ I + L
Sbjct: 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI-SHRAFSGLNSLEQ 156
Query: 127 LDLSNNNIRKIPYE-LGLAQQLHHLNLVGN 155
L L N+ IP E L L L L
Sbjct: 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186
Score = 94.0 bits (234), Expect = 5e-23
Identities = 40/150 (26%), Positives = 61/150 (40%), Gaps = 10/150 (6%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
R V + T R LDL N I+ L D + HL + L N + ++
Sbjct: 17 LCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG 74
Query: 71 F--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
N +LR L L SN+ + IP +F L NL L ++ N I + + L L
Sbjct: 75 AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSL 133
Query: 128 DLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
++ +N++ I + GL L L L
Sbjct: 134 EVGDNDLVYISHRAFSGL-NSLEQLTLEKC 162
Score = 93.6 bits (233), Expect = 6e-23
Identities = 31/153 (20%), Positives = 64/153 (41%), Gaps = 9/153 (5%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSH-NLIQNLPPDLLNLRHLVYMNLENNKLETIDI 69
L + ++ + F + ++ L++SH + + P+ L +L +++ + L +
Sbjct: 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241
Query: 70 D--FNFGHLRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
+ +LR LNLS N I + H L L+ + L + + +P + L V
Sbjct: 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV-EPYAFRGLNYLRV 300
Query: 127 LDLSNNNIRKIPYEL--GLAQQLHHLNLVGNCF 157
L++S N + + + + L L L N
Sbjct: 301 LNVSGNQLTTLEESVFHSV-GNLETLILDSNPL 332
Score = 90.9 bits (226), Expect = 5e-22
Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 9/151 (5%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNL-ENNKLETID 68
L L + ++ + + L L H I + L L + + L+T+
Sbjct: 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217
Query: 69 IDFNFG-HLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
+ +G +L L+++ +P HL L L L+ N I I + L ++ +L
Sbjct: 218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI-EGSMLHELLRLQE 276
Query: 127 LDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
+ L + + GL L LN+ GN
Sbjct: 277 IQLVGGQLAVVEPYAFRGL-NYLRVLNVSGN 306
Score = 79.0 bits (195), Expect = 8e-18
Identities = 24/129 (18%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
Query: 12 DLSY-NRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
++S+ L + ++ L ++H + +P + +L +L ++NL N + TI+
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265
Query: 70 D--FNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
L+E+ L + + F L+ L +L ++ N + + + + L
Sbjct: 266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL-EESVFHSVGNLET 324
Query: 127 LDLSNNNIR 135
L L +N +
Sbjct: 325 LILDSNPLA 333
Score = 74.8 bits (184), Expect = 2e-16
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 11/130 (8%)
Query: 32 RELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID--FNFGHLRELNLSSNKFQQ 88
R + +P + R L +L N+++T++ D +F HL EL L+ N
Sbjct: 14 RAVLCHRKRFVAVPEGIPTETRLL---DLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70
Query: 89 IPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYEL--GLAQ 145
+ F +L NL L L +N ++ I + LT LD+S N I + + L
Sbjct: 71 VEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLDISENKIVILLDYMFQDL-Y 128
Query: 146 QLHHLNLVGN 155
L L + N
Sbjct: 129 NLKSLEVGDN 138
Score = 46.2 bits (110), Expect = 2e-06
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 6/96 (6%)
Query: 73 FGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNN 132
R + +F +P+ I +L L N I+ + ++ L L+L+ N
Sbjct: 10 SAQDRAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNEN 66
Query: 133 NIRKIPYEL--GLAQQLHHLNLVGNCFKYPRQDILQ 166
+ + L L L L N K +
Sbjct: 67 IVSAVEPGAFNNL-FNLRTLGLRSNRLKLIPLGVFT 101
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 97.1 bits (242), Expect = 3e-24
Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 6/149 (4%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSH-NLIQNLPPDLL-NLRHLVYMNLENNKLETID 68
L N + + S F + S+ LDL ++ + L +L Y+NL ++ +
Sbjct: 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212
Query: 69 IDFNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
L EL +S N F +I F L +L+ L + N+ + I + + L L
Sbjct: 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI-ERNAFDGLASLVEL 271
Query: 128 DLSNNNIRKIPYE-LGLAQQLHHLNLVGN 155
+L++NN+ +P++ + L L+L N
Sbjct: 272 NLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 76.7 bits (189), Expect = 4e-17
Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 6/126 (4%)
Query: 14 SYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID-- 70
+L ++ F + +++ L+L I+++P +L L L + + N I
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSF 238
Query: 71 FNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDL 129
L++L + +++ I + F L +L L L +N++ + + ++ L L L
Sbjct: 239 HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL-PHDLFTPLRYLVELHL 297
Query: 130 SNNNIR 135
+N
Sbjct: 298 HHNPWN 303
Score = 73.6 bits (181), Expect = 7e-16
Identities = 35/147 (23%), Positives = 50/147 (34%), Gaps = 28/147 (19%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
+ L V + ++ R L+L N IQ + D
Sbjct: 60 VCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFR--------------------- 96
Query: 72 NFGHLRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLS 130
+ HL L L N +QI F+ L +L L L +N + I + KL L L
Sbjct: 97 HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRELWLR 155
Query: 131 NNNIRKIPYEL--GLAQQLHHLNLVGN 155
NN I IP + L L+L
Sbjct: 156 NNPIESIPSYAFNRV-PSLMRLDLGEL 181
Score = 49.7 bits (119), Expect = 1e-07
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 73 FGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNN 132
++ + ++P+ I N L L N+I+ I Q + + L VL L N
Sbjct: 53 SNQFSKVVCTRRGLSEVPQGIPS--NTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRN 109
Query: 133 NIRKIPYEL--GLAQQLHHLNLVGN 155
+IR+I GL L+ L L N
Sbjct: 110 SIRQIEVGAFNGL-ASLNTLELFDN 133
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 96.7 bits (241), Expect = 4e-24
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 6/149 (4%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSH-NLIQNLPPDLL-NLRHLVYMNLENNKLETID 68
L N + + S F I S+R LDL + + L +L Y+NL L I
Sbjct: 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201
Query: 69 IDFNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
L EL+LS N I F L +L+ L + + I+ I + +Q L +
Sbjct: 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI-ERNAFDNLQSLVEI 260
Query: 128 DLSNNNIRKIPYE-LGLAQQLHHLNLVGN 155
+L++NN+ +P++ L ++L N
Sbjct: 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 90.2 bits (224), Expect = 8e-22
Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 12/152 (7%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
LS N + + F+ + ++ L+L N + +P L L + L NN +E+I
Sbjct: 94 QLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS 153
Query: 70 D-FNF-GHLRELNLSS-NKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKLT 125
FN LR L+L + I + F L NL L L ++ EI L + KL
Sbjct: 154 YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN---LTPLIKLD 210
Query: 126 VLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
LDLS N++ I GL L L ++ +
Sbjct: 211 ELDLSGNHLSAIRPGSFQGL-MHLQKLWMIQS 241
Score = 87.5 bits (217), Expect = 8e-21
Identities = 45/151 (29%), Positives = 62/151 (41%), Gaps = 11/151 (7%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
L V + T+ R L+L N IQ + + +LRHL + L N + TI+I
Sbjct: 49 ICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG 106
Query: 71 --FNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
+L L L N+ IP F +L L+ L L NN IE I ++ L L
Sbjct: 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRL 165
Query: 128 DLSNNN-IRKIPYEL--GLAQQLHHLNLVGN 155
DL + I GL L +LNL
Sbjct: 166 DLGELKRLSYISEGAFEGL-SNLRYLNLAMC 195
Score = 76.7 bits (189), Expect = 5e-17
Identities = 27/126 (21%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 14 SYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID-- 70
RL ++ F ++++R L+L+ ++ +P +L L L ++L N L I
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSF 227
Query: 71 FNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDL 129
HL++L + ++ Q I + F +L +L + L +N++ + + + L + L
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL-PHDLFTPLHHLERIHL 286
Query: 130 SNNNIR 135
+N
Sbjct: 287 HHNPWN 292
Score = 48.6 bits (116), Expect = 2e-07
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 73 FGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNN 132
++ +++P I N +L L+ N I+ I + ++ L +L LS N
Sbjct: 42 SNQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRN 98
Query: 133 NIRKIPYEL--GLAQQLHHLNLVGN 155
+IR I GL L+ L L N
Sbjct: 99 HIRTIEIGAFNGL-ANLNTLELFDN 122
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 94.3 bits (235), Expect = 7e-24
Identities = 38/176 (21%), Positives = 72/176 (40%), Gaps = 14/176 (7%)
Query: 9 EQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETI 67
+ + L V + + +S L+L N +Q+LP + L L ++L +N L
Sbjct: 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67
Query: 68 DID----FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQK 123
F L+ L+LS N + L+ LE L +++++++++ + ++
Sbjct: 68 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127
Query: 124 LTVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLR 177
L LD+S+ + R + GL L L + GN Q+ L L
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGN----SFQENFLPDIFTELRNLT 178
Score = 91.6 bits (228), Expect = 7e-23
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 12 DLSYNRL---HVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETID 68
LS N L + F TS++ LDLS N + + + L L L +++ +++ L+ +
Sbjct: 58 SLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 117
Query: 69 IDFNFGH---LRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKL 124
F L L++S + IF L +LE+L + N +E P+ +++ L
Sbjct: 118 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177
Query: 125 TVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
T LDLS + ++ L L LN+ N
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSL-SSLQVLNMSHN 209
Score = 88.9 bits (221), Expect = 8e-22
Identities = 32/153 (20%), Positives = 63/153 (41%), Gaps = 10/153 (6%)
Query: 12 DLSYNRLHVVNSK--LFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETID 68
D ++ L ++ + ++ LD+SH + + L L + + N +
Sbjct: 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166
Query: 69 IDFNF---GHLRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKL 124
+ F +L L+LS + +Q+ F+ L +L++L +++N+ + + L
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSL 225
Query: 125 TVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
VLD S N+I + L LNL N
Sbjct: 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
Score = 77.0 bits (190), Expect = 2e-17
Identities = 32/130 (24%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHN-LIQNLPPDLL-NLRHLVYMNLENNKLETID 68
D+S+ V + +F+ ++S+ L ++ N +N PD+ LR+L +++L +LE +
Sbjct: 132 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 191
Query: 69 ID--FNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
+ L+ LN+S N F + + L++L++L + N I + E L
Sbjct: 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 251
Query: 126 VLDLSNNNIR 135
L+L+ N+
Sbjct: 252 FLNLTQNDFA 261
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 93.5 bits (233), Expect = 2e-23
Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 8/175 (4%)
Query: 9 EQADLSYNRLHVVNSKLF-DITSIRELDLSHNLIQN--LPPDLL-NLRHLVYMNLENNKL 64
++ + N + V +F + + ++L N +++ + ++ L Y+ + + +
Sbjct: 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183
Query: 65 ETIDIDFNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQK 123
TI L EL+L NK ++ L+NL L L+ N I + L
Sbjct: 184 TTIP-QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV-DNGSLANTPH 241
Query: 124 LTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKY-PRQDILQKGTPFLLSYLR 177
L L L+NN + K+P L + + + L N D G +
Sbjct: 242 LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296
Score = 91.6 bits (228), Expect = 1e-22
Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 7/148 (4%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
DL N++ + F + ++ L L +N I + P L L + L N+L+ +
Sbjct: 58 DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE 117
Query: 70 DFNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEIN-QPEKLVKMQKLTVL 127
L+EL + N+ ++ K +F L+ + ++ L N ++ + M+KL+ +
Sbjct: 118 KM-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176
Query: 128 DLSNNNIRKIPYELGLAQQLHHLNLVGN 155
+++ NI IP GL L L+L GN
Sbjct: 177 RIADTNITTIP--QGLPPSLTELHLDGN 202
Score = 87.4 bits (217), Expect = 4e-21
Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 13/155 (8%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
++ + + L S+ EL L N I + L L +L + L N + +D
Sbjct: 177 RIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234
Query: 71 --FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEIN-----QPEKLVKMQK 123
N HLREL+L++NK ++P + ++++ L+NN+I I P K
Sbjct: 235 SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294
Query: 124 LTVLDLSNNNIRKIPYELGL---AQQLHHLNLVGN 155
+ + L +N ++ + + L
Sbjct: 295 YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 78.9 bits (195), Expect = 5e-18
Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 11/150 (7%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDID 70
S L V L LDL +N I + NL++L + L NNK+ I
Sbjct: 37 QCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG 94
Query: 71 F--NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
L L LS N+ +++P+ + L+ L ++ N+I ++ + + ++ V++
Sbjct: 95 AFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKV-RKSVFNGLNQMIVVE 151
Query: 129 LSNNNIRKIPYELGL---AQQLHHLNLVGN 155
L N ++ E G ++L ++ +
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADT 181
Score = 54.2 bits (131), Expect = 3e-09
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 11/85 (12%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD-------LLNLRHLVYMNLENNKL 64
L+ N+L V L D I+ + L +N I + + ++L +N +
Sbjct: 246 HLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305
Query: 65 ETIDID----FNFGHLRELNLSSNK 85
+ +I + L + K
Sbjct: 306 QYWEIQPSTFRCVYVRAAVQLGNYK 330
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 94.0 bits (234), Expect = 6e-23
Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 13/159 (8%)
Query: 12 DLSYNRLHVVN--SKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETI-- 67
+ YN L + L + + L+ +N ++ P + L +NL N++ I
Sbjct: 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPA 370
Query: 68 DIDFNFGHLRELNLSSNKFQQIPKCIFH--LDNLEILILNNNDIEEINQ------PEKLV 119
+ + L+ + NK + IP + + + + N+I ++
Sbjct: 371 NFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430
Query: 120 KMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCF 157
K ++ ++LSNN I K P E L +NL+GN
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469
Score = 92.0 bits (229), Expect = 3e-22
Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 19/161 (11%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL--------NLRHLVYMNLENN 62
+LS N++ +LF + + ++L N++ +P + L N L ++L N
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498
Query: 63 KLETIDIDFNFG---HLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQ----- 114
KL + DF +L ++LS N F + P + L+ + N + N+
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558
Query: 115 PEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
PE + LT L + +N+IRK+ ++ + L++ N
Sbjct: 559 PEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDN 597
Score = 85.9 bits (213), Expect = 4e-20
Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 20/164 (12%)
Query: 12 DLSYNRLHVVNSKLF--DITSIRELDLSHNLI--------QNLPPDLLNLRHLVYMNLEN 61
++N+L + + ++ + +D S+N I L P ++ +NL N
Sbjct: 383 SFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442
Query: 62 NKLETI--DIDFNFGHLRELNLSSNKFQQIPK--------CIFHLDNLEILILNNNDIEE 111
N++ ++ L +NL N +IPK + L + L N + +
Sbjct: 443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502
Query: 112 INQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
++ + + L +DLS N+ K P + + L +
Sbjct: 503 LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ 546
Score = 79.7 bits (197), Expect = 6e-18
Identities = 25/175 (14%), Positives = 59/175 (33%), Gaps = 31/175 (17%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHN--------------------LIQNLPPDLLNL 51
N + V+ + +T +R+ + ++ + NL
Sbjct: 189 GQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL 248
Query: 52 RHLVYMNL-ENNKLETIDIDF-NFGHLRELNLSSNKFQQIPKC---------IFHLDNLE 100
+ L + + L + ++ +N++ N+ + + ++
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308
Query: 101 ILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
I+ + N+++ L KM+KL +L+ N + G +L LNL N
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN 363
Score = 73.5 bits (181), Expect = 6e-16
Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 23/163 (14%)
Query: 12 DLSYNRLH--------VVNSKLFDITSIRELDLSHNLIQNLPPDL--LNLRHLVYMNLEN 61
+L N L N + + +DL N + L D L +LV ++L
Sbjct: 463 NLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSY 522
Query: 62 NKLETIDID-FNFGHLRELNLSSNK-------FQQIPKCIFHLDNLEILILNNNDIEEIN 113
N N L+ + + + ++ P+ I +L L + +NDI ++
Sbjct: 523 NSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV- 581
Query: 114 QPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGN 155
EK+ ++VLD+ +N I + + L +
Sbjct: 582 -NEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621
Score = 63.1 bits (154), Expect = 3e-12
Identities = 23/195 (11%), Positives = 49/195 (25%), Gaps = 29/195 (14%)
Query: 12 DLSYNRLHVVN-----SKLFDITSIRELDLSHNLIQNLPPD---LLNLRHLVYMNLENNK 63
L + V + S + Q D + L+ + ++
Sbjct: 111 ALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDP 170
Query: 64 LETI--DIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLV-- 119
+ ++ SN + K + L L + N+ N E
Sbjct: 171 QQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230
Query: 120 ----------------KMQKLTVLDLSNNN-IRKIPYELGLAQQLHHLNLVGNCFKYPRQ 162
++ LT +++ N + K+P L ++ +N+ N Q
Sbjct: 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290
Query: 163 DILQKGTPFLLSYLR 177
Sbjct: 291 LKDDWQALADAPVGE 305
Score = 59.7 bits (145), Expect = 5e-11
Identities = 16/140 (11%), Positives = 38/140 (27%), Gaps = 13/140 (9%)
Query: 27 DITSIRELDLSHN-LIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFG------HLREL 79
+ L L +P + L L + L ++ + + F +
Sbjct: 79 SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138
Query: 80 NLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQ----PEKLVKMQKLTVLDLSNNNIR 135
+ + + + L + I Q + K T + +NNI
Sbjct: 139 QKMRMHY--QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196
Query: 136 KIPYELGLAQQLHHLNLVGN 155
+ + +L + +
Sbjct: 197 FVSKAVMRLTKLRQFYMGNS 216
Score = 59.3 bits (144), Expect = 5e-11
Identities = 18/156 (11%), Positives = 48/156 (30%), Gaps = 14/156 (8%)
Query: 12 DLSYNRLH-VVNSKLFDITSIRELDLSHNLIQ-----NLPPDLLNLRHLVYMNLENNKLE 65
L V + +T + L L + + P + +
Sbjct: 87 SLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQ 146
Query: 66 TIDIDF----NFGHLRELNLSSN-KFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVK 120
+D+ +F L + ++S+ + + I K + +N+I + + +++
Sbjct: 147 KTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV--SKAVMR 204
Query: 121 MQKLTVLDLSNNNIR-KIPYELGLAQQLHHLNLVGN 155
+ KL + N+ + E + +
Sbjct: 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240
Score = 45.0 bits (107), Expect = 5e-06
Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 6/110 (5%)
Query: 72 NFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDI---EEINQPEKLVKMQKLTVL 127
+ G + L+L ++P I L LE+L L ++ E + P+ +
Sbjct: 79 SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138
Query: 128 DLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLR 177
+ + + +L+ +C Q K + +
Sbjct: 139 QKMRMHY--QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 91.4 bits (227), Expect = 1e-22
Identities = 51/176 (28%), Positives = 74/176 (42%), Gaps = 12/176 (6%)
Query: 11 ADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD--LLNLRHLVYMNLENNKLETID 68
S +L V L + LDLSHN + L + L +L + L +N L I
Sbjct: 23 LSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS 80
Query: 69 IDF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
+ +LR L+LSSN + + +F L LE+L+L NN I + M +L
Sbjct: 81 SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVV-DRNAFEDMAQLQ 139
Query: 126 VLDLSNNNIRKIPYE----LGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLR 177
L LS N I + P E +L L+L N K LQK ++ + L
Sbjct: 140 KLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195
Score = 78.7 bits (194), Expect = 7e-18
Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 11/134 (8%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
LS+N L+ ++S+ F + ++R LDLS N + L L +L+ L + L NN + +D
Sbjct: 70 LLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR 129
Query: 70 D-F-NFGHLRELNLSSNKFQQIPKCIF----HLDNLEILILNNNDIEEINQPEKLVKMQK 123
+ F + L++L LS N+ + P + L L +L L++N ++++ L K+
Sbjct: 130 NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL-PLTDLQKLPA 188
Query: 124 LTV--LDLSNNNIR 135
L L NN +
Sbjct: 189 WVKNGLYLHNNPLE 202
Score = 44.8 bits (106), Expect = 5e-06
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 77 RELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRK 136
L+ S + +P+ + +L L++N++ + ++ L L LS+N++
Sbjct: 21 NILSCSKQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF 78
Query: 137 IPYEL--GLAQQLHHLNLVGN 155
I E + L +L+L N
Sbjct: 79 ISSEAFVPV-PNLRYLDLSSN 98
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 89.7 bits (223), Expect = 3e-22
Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 8/151 (5%)
Query: 12 DLSYN-RLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETID 68
DLS N +L V+ F + + L L +Q L P L L L Y+ L++N L+ +
Sbjct: 86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145
Query: 69 IDF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
D + G+L L L N+ +P+ F L +L+ L+L+ N + + P + +L
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV-HPHAFRDLGRLM 204
Query: 126 VLDLSNNNIRKIPYE-LGLAQQLHHLNLVGN 155
L L NN+ +P E L + L +L L N
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 65.8 bits (161), Expect = 2e-13
Identities = 30/148 (20%), Positives = 48/148 (32%), Gaps = 29/148 (19%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
L V + + + + L N I ++P
Sbjct: 17 SCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFR--------------------- 53
Query: 72 NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILIL-NNNDIEEINQPEKLVKMQKLTVLDL 129
+L L L SN +I F L LE L L +N + + P + +L L L
Sbjct: 54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHTLHL 112
Query: 130 SNNNIRKIPYEL--GLAQQLHHLNLVGN 155
++++ L GL L +L L N
Sbjct: 113 DRCGLQELGPGLFRGL-AALQYLYLQDN 139
Score = 41.9 bits (99), Expect = 3e-05
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 77 RELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRK 136
+ Q +P I + + L+ N I + + LT+L L +N + +
Sbjct: 14 VTTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLAR 70
Query: 137 IPYEL--GLAQQLHHLNLVGNC 156
I GL L L+L N
Sbjct: 71 IDAAAFTGL-ALLEQLDLSDNA 91
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 90.1 bits (224), Expect = 4e-22
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 6/147 (4%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDI 69
DL N + + F + + L L +N I + LR L + + N L I
Sbjct: 60 DLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP 119
Query: 70 DFNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
+ L EL + N+ +++PK +F L N+ + + N +E KL L
Sbjct: 120 NL-PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178
Query: 129 LSNNNIRKIPYELGLAQQLHHLNLVGN 155
+S + IP L + L+ L+L N
Sbjct: 179 ISEAKLTGIP--KDLPETLNELHLDHN 203
Score = 88.2 bits (219), Expect = 2e-21
Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 6/151 (3%)
Query: 9 EQADLSYNRLHVVNSKLF-DITSIRELDLSHNLIQN--LPPDLLNLRHLVYMNLENNKLE 65
+ + NR+ V +F + ++ +++ N ++N P + L Y+ + KL
Sbjct: 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT 185
Query: 66 TIDIDFNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKL 124
I D L EL+L NK Q I L L L +N I I + L + L
Sbjct: 186 GIPKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI-ENGSLSFLPTL 243
Query: 125 TVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
L L NN + ++P L + L + L N
Sbjct: 244 RELHLDNNKLSRVPAGLPDLKLLQVVYLHTN 274
Score = 82.4 bits (204), Expect = 2e-19
Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 10/147 (6%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
+S +L + L ++ EL L HN IQ + + L L + L +N++ I+
Sbjct: 178 RISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG 235
Query: 71 --FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQ-----PEKLVKMQK 123
LREL+L +NK ++P + L L+++ L+ N+I ++ VK
Sbjct: 236 SLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295
Query: 124 LTVLDLSNNNIRKIPYELGLAQQLHHL 150
+ L NN + + + +
Sbjct: 296 YNGISLFNNPVPYWEVQPATFRCVTDR 322
Score = 78.5 bits (194), Expect = 7e-18
Identities = 34/161 (21%), Positives = 66/161 (40%), Gaps = 10/161 (6%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDID 70
S L V ++ LDL +N I L D L+HL + L NNK+ I
Sbjct: 39 QCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK 96
Query: 71 --FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
L++L +S N +IP + +L L +++N I ++ ++ + ++
Sbjct: 97 AFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKV-PKGVFSGLRNMNCIE 153
Query: 129 LSNNNIRKIPYELGLAQ--QLHHLNLVGNCFKYPRQDILQK 167
+ N + +E G +L++L + +D+ +
Sbjct: 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET 194
Score = 71.6 bits (176), Expect = 2e-15
Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 11/132 (8%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
L +N++ + + + + L L HN I+ + L L L ++L+NNKL +
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA 258
Query: 70 DF-NFGHLRELNLSSNKFQQIPKCIF-------HLDNLEILILNNNDIEEIN-QPEKLVK 120
+ L+ + L +N ++ F + L NN + QP
Sbjct: 259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318
Query: 121 MQKLTVLDLSNN 132
+ + N
Sbjct: 319 VTDRLAIQFGNY 330
Score = 51.2 bits (123), Expect = 3e-08
Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 11/85 (12%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD-------LLNLRHLVYMNLENNKL 64
L N+L V + L D+ ++ + L N I + + + + ++L NN +
Sbjct: 247 HLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306
Query: 65 ETIDID----FNFGHLRELNLSSNK 85
++ + + K
Sbjct: 307 PYWEVQPATFRCVTDRLAIQFGNYK 331
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 90.9 bits (226), Expect = 6e-22
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 8/164 (4%)
Query: 12 DLSYNRLHVVNSKLFDI---TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETID 68
DLS N L TS++ LDLS N + + + L L L +++ +++ L+ +
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 412
Query: 69 IDFNFGH---LRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKL 124
F L L++S + IF L +LE+L + N +E P+ +++ L
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472
Query: 125 TVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYPRQDILQK 167
T LDLS + ++ L LN+ N K I +
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516
Score = 87.1 bits (216), Expect = 2e-20
Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 10/154 (6%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
DLS+N L + S F ++ LDLS IQ + +L HL + L N ++++ +
Sbjct: 34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93
Query: 70 DF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
L++L + HL L+ L + +N I+ PE + L
Sbjct: 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153
Query: 127 LDLSNNNIRKIPYEL-----GLAQQLHHLNLVGN 155
LDLS+N I+ I + L+L N
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187
Score = 85.2 bits (211), Expect = 7e-20
Identities = 32/162 (19%), Positives = 67/162 (41%), Gaps = 9/162 (5%)
Query: 11 ADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
+ + L S + LDLS N +++L + L ++L +++TI+
Sbjct: 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69
Query: 70 DF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
+ HL L L+ N Q + F L +L+ L+ ++ + + + ++ L
Sbjct: 70 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKE 128
Query: 127 LDLSNNNIRKIPYELGLAQ--QLHHLNLVGNCFKYPRQDILQ 166
L++++N I+ + L HL+L N + L+
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170
Score = 82.1 bits (203), Expect = 9e-19
Identities = 32/149 (21%), Positives = 62/149 (41%), Gaps = 8/149 (5%)
Query: 13 LSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDI--- 69
L + S++ L + N N ++L L +++L N L
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQ 367
Query: 70 -DFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
DF L+ L+LS N + L+ LE L +++++++++ + ++ L LD
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427
Query: 129 LSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
+S+ + R + GL L L + GN
Sbjct: 428 ISHTHTRVAFNGIFNGL-SSLEVLKMAGN 455
Score = 73.2 bits (180), Expect = 1e-15
Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 8/130 (6%)
Query: 12 DLSYNRLHVV-NSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETID 68
D ++ L + +F + ++ LD+SH + + L L + + N +
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461
Query: 69 IDFNFGH---LRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKL 124
+ F L L+LS + +Q+ F L +L++L + +N ++ + ++ L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP-DGIFDRLTSL 520
Query: 125 TVLDLSNNNI 134
+ L N
Sbjct: 521 QKIWLHTNPW 530
Score = 62.8 bits (153), Expect = 3e-12
Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 9/136 (6%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPD--LLNLRHLVYMNLENNKLETI- 67
L + + + +++EL+++HNLIQ+ NL +L +++L +NK+++I
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Query: 68 DIDFNF-----GHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQ 122
D L+LS N I F L L L NN + +
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA 225
Query: 123 KLTVLDLSNNNIRKIP 138
L V L R
Sbjct: 226 GLEVHRLVLGEFRNEG 241
Score = 56.6 bits (137), Expect = 4e-10
Identities = 31/165 (18%), Positives = 54/165 (32%), Gaps = 24/165 (14%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
+ L + + + + LD + I +L L N+ +L + +E +
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS---FSLVSVTIERVKDFS 301
Query: 72 NFGHLRELNLSSNKFQQIPKCIF--------------------HLDNLEILILNNNDIEE 111
+ L L + KF Q P L +LE L L+ N +
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 361
Query: 112 IN-QPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
+ L LDLS N + + +QL HL+ +
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406
Score = 49.7 bits (119), Expect = 1e-07
Identities = 16/81 (19%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 12 DLSYNRLH-VVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETID 68
++ N +F + ++ LDLS ++ L P +L L +N+ +N+L+++
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510
Query: 69 IDF--NFGHLRELNLSSNKFQ 87
L+++ L +N +
Sbjct: 511 DGIFDRLTSLQKIWLHTNPWD 531
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 89.3 bits (222), Expect = 1e-21
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 9/145 (6%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
++SYN L S L ++ ELD SHN I + + L + L++N L
Sbjct: 192 NVSYNLL----STLAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLTDTAWLL 245
Query: 72 NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLS 130
N+ L E++LS N+ ++I F + LE L ++NN + + + L VLDLS
Sbjct: 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLS 303
Query: 131 NNNIRKIPYELGLAQQLHHLNLVGN 155
+N++ + +L +L L N
Sbjct: 304 HNHLLHVERNQPQFDRLENLYLDHN 328
Score = 86.3 bits (214), Expect = 2e-20
Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 9/156 (5%)
Query: 2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLEN 61
+A VE+ D S+N ++VV + + L L HN + + LLN LV ++L
Sbjct: 201 LAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLTDT-AWLLNYPGLVEVDLSY 257
Query: 62 NKLETIDIDF--NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLV 119
N+LE I L L +S+N+ + + L++L L++N + +
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV--ERNQP 315
Query: 120 KMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
+ +L L L +N+I + L L +L L N
Sbjct: 316 QFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 349
Score = 84.3 bits (209), Expect = 8e-20
Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 8/149 (5%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
+ + + + L D + L+L+ I+ + + + + N + +
Sbjct: 51 TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 110
Query: 70 DF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
N L L L N +P+ IF + L L ++NN++E I + + L
Sbjct: 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQN 169
Query: 127 LDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
L LS+N + + L L L H N+ N
Sbjct: 170 LQLSSNRLTHVD--LSLIPSLFHANVSYN 196
Score = 81.6 bits (202), Expect = 8e-19
Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 8/146 (5%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
L +N L L + + E+DLS+N ++ + ++ L + + NN+L +++
Sbjct: 232 KLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 290
Query: 71 F-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDL 129
L+ L+LS N + + D LE L L++N I + L L L L
Sbjct: 291 GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTL 346
Query: 130 SNNNIRKIPYELGLAQQLHHLNLVGN 155
S+N+ L + + +
Sbjct: 347 SHNDWDCNSL-RALFRNVARPAVDDA 371
Score = 80.5 bits (199), Expect = 2e-18
Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 12/146 (8%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
L N L + +F + + L +S+N ++ + D L + L +N+L +D+
Sbjct: 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL 182
Query: 70 DFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDL 129
L N+S N + I +E L ++N I + P +LT+L L
Sbjct: 183 S-LIPSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVVRGP----VNVELTILKL 233
Query: 130 SNNNIRKIPYELGLAQQLHHLNLVGN 155
+NN+ + L L ++L N
Sbjct: 234 QHNNLTDTAWLLNY-PGLVEVDLSYN 258
Score = 80.1 bits (198), Expect = 3e-18
Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 6/139 (4%)
Query: 22 NSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDIDF--NFGHLRE 78
+ + + + + ++ ++ LP LL + R + +NL + ++E ID +++
Sbjct: 38 GFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQK 97
Query: 79 LNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI 137
L + N + +P +F ++ L +L+L ND+ + KLT L +SNNN+ +I
Sbjct: 98 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERI 156
Query: 138 PYELGLA-QQLHHLNLVGN 155
+ A L +L L N
Sbjct: 157 EDDTFQATTSLQNLQLSSN 175
Score = 70.8 bits (174), Expect = 4e-15
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 6/133 (4%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID 70
DLSYN L + F + + L +S+N + L + L ++L +N L ++ +
Sbjct: 254 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERN 313
Query: 71 -FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDL 129
F L L L N + H L+ L L++ND + + + + V D
Sbjct: 314 QPQFDRLENLYLDHNSIVTLKLSTHH--TLKNLTLSHNDWDCNSLRALFRNVARPAVDD- 370
Query: 130 SNNNIRKIPYELG 142
+ KI Y+L
Sbjct: 371 -ADQHCKIDYQLE 382
Score = 55.1 bits (133), Expect = 1e-09
Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 5/115 (4%)
Query: 43 NLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFH-LDNLEI 101
NL D + V+++++ + D + + + ++ +++P + +E+
Sbjct: 16 NLQYDCVFYD--VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73
Query: 102 LILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGL-AQQLHHLNLVGN 155
L LN+ IEEI+ + L + N IR +P + L L L N
Sbjct: 74 LNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 88.9 bits (221), Expect = 3e-21
Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 9/155 (5%)
Query: 12 DLSYNRLHVVNSKLFDI---TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETI 67
++ +F+ S+ ++L + N+ + L ++L L +
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL 293
Query: 68 DIDF-NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
L++L LS+NKF+ + + + +L L + N L ++ L
Sbjct: 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353
Query: 126 VLDLSNNNIRKIPYELGLAQ---QLHHLNLVGNCF 157
LDLS+++I + L LNL N
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388
Score = 85.5 bits (212), Expect = 5e-20
Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 32/180 (17%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL---------------------- 49
DL+ L + S L ++++++L LS N +NL
Sbjct: 284 DLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343
Query: 50 ----NLRHLVYMNLENNKLETIDID----FNFGHLRELNLSSNKFQQIPKCIF-HLDNLE 100
NL +L ++L ++ +ET D N HL+ LNLS N+ + F LE
Sbjct: 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE 403
Query: 101 ILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKY 159
+L L ++ + + L VL+LS++ + + L HLNL GN F
Sbjct: 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463
Score = 85.5 bits (212), Expect = 6e-20
Identities = 38/164 (23%), Positives = 65/164 (39%), Gaps = 10/164 (6%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPD--LLNLRHLVYMNLENNKLETID 68
+LSYN + ++ F + + LDL+ ++ NL L +NL ++ L+
Sbjct: 382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS 441
Query: 69 IDF--NFGHLRELNLSSNKFQQIPKCIF----HLDNLEILILNNNDIEEINQPEKLVKMQ 122
L+ LNL N F + L LEIL+L+ D+ I ++
Sbjct: 442 EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI-DQHAFTSLK 500
Query: 123 KLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQ 166
+ +DLS+N + E + +LNL N +L
Sbjct: 501 MMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLP 544
Score = 85.1 bits (211), Expect = 7e-20
Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 8/154 (5%)
Query: 11 ADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDI 69
+ L+ + L S L+ S N++ + L +L +++L ++ I
Sbjct: 17 YNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74
Query: 70 DF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
D + L L L++N + + L+ L I I L + L
Sbjct: 75 DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI-DFIPLHNQKTLES 133
Query: 127 LDLSNNNIRKIPY-ELGLAQQLHHLNLVGNCFKY 159
L L +N+I I + ++L L+ N Y
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167
Score = 82.4 bits (204), Expect = 7e-19
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 12/154 (7%)
Query: 12 DLSYNRLHVVNSKLF--DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETID 68
DL++ RL V +++ ++ ++ L+LSH+L+ L L L ++NL+ N +
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465
Query: 69 IDF-----NFGHLRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQ 122
I G L L LS I + F L + + L++N + E L ++
Sbjct: 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS-SIEALSHLK 524
Query: 123 KLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGN 155
+ L+L++N+I I L + Q +NL N
Sbjct: 525 GI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557
Score = 82.4 bits (204), Expect = 7e-19
Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
DL+ +++ ++ F + L L+ N + + L + L ++ + +ID
Sbjct: 63 DLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF 122
Query: 70 DF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
N L L L SN I + L++L NN I + E + +Q+ T
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL-SKEDMSSLQQATN 181
Query: 127 --LDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLR 177
L+L+ N+I I + LN G L+ T L
Sbjct: 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234
Score = 77.7 bits (192), Expect = 2e-17
Identities = 30/157 (19%), Positives = 59/157 (37%), Gaps = 11/157 (7%)
Query: 12 DLSYNRLHVV---NSKLFDITSIRELDLSHNLIQNLPPDL---LNLRHLVYMNLENNKLE 65
+ + +V K I S+ +++ P + L + +NL+ +
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267
Query: 66 TIDID--FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQK 123
I + F L+EL+L++ ++P + L L+ L+L+ N E +
Sbjct: 268 NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPS 326
Query: 124 LTVLDLSNNNIRK--IPYELGLAQQLHHLNLVGNCFK 158
LT L + N R L + L L+L + +
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363
Score = 75.1 bits (185), Expect = 2e-16
Identities = 26/158 (16%), Positives = 50/158 (31%), Gaps = 11/158 (6%)
Query: 12 DLSYNRLHVVNSKLFDI---TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETID 68
D N +H ++ + + L+L+ N I + P + +N + +
Sbjct: 159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVI 218
Query: 69 ID----FNFGHLRELNLSSNKFQQIPKCIF---HLDNLEILILNNNDIEEINQPEKLVKM 121
L + I +F ++E + L + I
Sbjct: 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI-SSNTFHCF 277
Query: 122 QKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKY 159
L LDL+ ++ ++P L L L L N F+
Sbjct: 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN 315
Score = 73.9 bits (182), Expect = 5e-16
Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 8/130 (6%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPD----LLNLRHLVYMNLENNKLET 66
+LS++ L + + +LFD + +++ L+L N L L L + L L +
Sbjct: 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490
Query: 67 IDIDF--NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKL 124
ID + + ++LS N+ L L +N I I P L + +
Sbjct: 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIIL-PSLLPILSQQ 549
Query: 125 TVLDLSNNNI 134
++L N +
Sbjct: 550 RTINLRQNPL 559
Score = 72.0 bits (177), Expect = 3e-15
Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 7/128 (5%)
Query: 32 RELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID--FNFGHLRELNLSSNKFQQI 89
+ + + + +P L N + N L TI +L L+L+ + I
Sbjct: 15 KTYNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72
Query: 90 PKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI-PYELGLAQQL 147
+ F L+ L+L N + + L + L L I I L + L
Sbjct: 73 HEDTFQSQHRLDTLVLTANPLIFMA-ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131
Query: 148 HHLNLVGN 155
L L N
Sbjct: 132 ESLYLGSN 139
Score = 55.0 bits (133), Expect = 2e-09
Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 14/128 (10%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID 70
LS+ L ++ F + + +DLSHN + + + L+ +Y+NL +N + I
Sbjct: 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPS 541
Query: 71 F--NFGHLRELNLSSNKFQQIPKCIFHL-DNLEILILNNNDIEEINQ-----PEKLVKMQ 122
R +NL N C LE N +E+ P L +
Sbjct: 542 LLPILSQQRTINLRQNPLD----CTCSNIYFLEWYKENMQKLEDTEDTLCENPPLL-RGV 596
Query: 123 KLTVLDLS 130
+L+ + LS
Sbjct: 597 RLSDVTLS 604
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 87.0 bits (216), Expect = 4e-21
Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 6/168 (3%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL--NLRHLVYMNLENNKLETID 68
L+ N++ ++ + ++ LDL N I + L + L ++NL+ N + +
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185
Query: 69 IDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
F L+ L+LSSNK + + + L NN + I + L Q L D
Sbjct: 186 GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI--EKALRFSQNLEHFD 243
Query: 129 LSNNNIRKIPYELGLAQQLHHLNLVGNCFKY-PRQDILQKGTPFLLSY 175
L N ++ + K Q+ + P L Y
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291
Score = 78.1 bits (193), Expect = 8e-18
Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 11/147 (7%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
++ + L + L +++ELDLS N + + L L +NL +N L
Sbjct: 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD 75
Query: 70 DFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDL 129
+ LR L+L++N Q++ ++E L NN+I ++ + Q + L
Sbjct: 76 LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCS----RGQGKKNIYL 127
Query: 130 SNNNIRKIP-YELGLAQQLHHLNLVGN 155
+NN I + + G ++ +L+L N
Sbjct: 128 ANNKITMLRDLDEGCRSRVQYLDLKLN 154
Score = 76.2 bits (188), Expect = 4e-17
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 12/130 (9%)
Query: 29 TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNK 85
+ ++ + ++ L + ++ ++L N L I F L LNLSSN
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 86 FQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQ 145
+ + L L L LNNN ++E+ + L +NNNI ++ G Q
Sbjct: 70 LYETL-DLESLSTLRTLDLNNNYVQELLV------GPSIETLHAANNNISRVSCSRG--Q 120
Query: 146 QLHHLNLVGN 155
++ L N
Sbjct: 121 GKKNIYLANN 130
Score = 56.9 bits (138), Expect = 3e-10
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 68 DIDFNFGHLRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
+I N + ++ + +Q + N++ L L+ N + +I L KL +
Sbjct: 4 EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLEL 62
Query: 127 LDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
L+LS+N + + +L L L+L N
Sbjct: 63 LNLSSNVLYETL-DLESLSTLRTLDLNNN 90
Score = 40.0 bits (94), Expect = 2e-04
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 89 IPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQL 147
I + + + +I + ++ +++ + LDLS N + +I L +L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 148 HHLNLVGN 155
LNL N
Sbjct: 61 ELLNLSSN 68
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 87.3 bits (217), Expect = 4e-21
Identities = 29/155 (18%), Positives = 61/155 (39%), Gaps = 13/155 (8%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
+L L + F ++ ++ + + + LP + L + L N L +
Sbjct: 87 ELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASI 146
Query: 72 -NFGHLRELNLSS-NKFQQIPKCI---------FHLDNLEILILNNNDIEEINQPEKLVK 120
+ LREL++ + + ++P+ + L NL+ L L I + P +
Sbjct: 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL--PASIAN 204
Query: 121 MQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
+Q L L + N+ + + + +L L+L G
Sbjct: 205 LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239
Score = 85.4 bits (212), Expect = 2e-20
Identities = 31/158 (19%), Positives = 51/158 (32%), Gaps = 11/158 (6%)
Query: 12 DLSYNRLHVVNSKLFDITSI--RELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDI 69
+ L L D T L+L + P L HL +M ++ L +
Sbjct: 62 TRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPD 121
Query: 70 DF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNN--------DIEEINQPEKLVK 120
F L L L+ N + +P I L+ L L + + + +
Sbjct: 122 TMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181
Query: 121 MQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFK 158
+ L L L IR +P + Q L L + +
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS 219
Score = 77.7 bits (192), Expect = 1e-17
Identities = 26/137 (18%), Positives = 60/137 (43%), Gaps = 6/137 (4%)
Query: 23 SKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNL 81
+ + +++ L L I++LP + NL++L + + N+ L + + L EL+L
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236
Query: 82 SS-NKFQQIPKCIFHLDNLEILIL-NNNDIEEINQPEKLVKMQKLTVLDLSNN-NIRKIP 138
+ P L+ LIL + +++ + P + ++ +L LDL N+ ++P
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL--PLDIHRLTQLEKLDLRGCVNLSRLP 294
Query: 139 YELGLAQQLHHLNLVGN 155
+ + + +
Sbjct: 295 SLIAQLPANCIILVPPH 311
Score = 77.3 bits (191), Expect = 2e-17
Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 15/157 (9%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSH-NLIQNLPPDLLN---------LRHLVYMNLEN 61
L+ N L + + + + +REL + + LP L + L +L + LE
Sbjct: 133 TLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192
Query: 62 NKLETIDIDF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILIL-NNNDIEEINQPEKLV 119
+ ++ N +L+ L + ++ + I HL LE L L + P
Sbjct: 193 TGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY--PPIFG 250
Query: 120 KMQKLTVLDLSN-NNIRKIPYELGLAQQLHHLNLVGN 155
L L L + +N+ +P ++ QL L+L G
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287
Score = 73.4 bits (181), Expect = 4e-16
Identities = 22/134 (16%), Positives = 46/134 (34%), Gaps = 8/134 (5%)
Query: 28 ITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDI------DFNFGHLRELNL 81
+ + +N +N + +E + D L L
Sbjct: 29 HDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALEL 88
Query: 82 SSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYEL 141
S Q P F L +L+ + ++ + E+ P+ + + L L L+ N +R +P +
Sbjct: 89 RSVPLPQFPDQAFRLSHLQHMTIDAAGLMEL--PDTMQQFAGLETLTLARNPLRALPASI 146
Query: 142 GLAQQLHHLNLVGN 155
+L L++
Sbjct: 147 ASLNRLRELSIRAC 160
Score = 68.8 bits (169), Expect = 2e-14
Identities = 20/134 (14%), Positives = 53/134 (39%), Gaps = 6/134 (4%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNL-ENNKLETIDID 70
L + + + + + ++ +++ L + ++ + L P + +L L ++L L
Sbjct: 189 RLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI 248
Query: 71 F-NFGHLRELNLSS-NKFQQIPKCIFHLDNLEILIL-NNNDIEEINQPEKLVKMQKLTVL 127
F L+ L L + +P I L LE L L ++ + P + ++ ++
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL--PSLIAQLPANCII 306
Query: 128 DLSNNNIRKIPYEL 141
+ + ++
Sbjct: 307 LVPPHLQAQLDQHR 320
Score = 66.1 bits (162), Expect = 2e-13
Identities = 14/133 (10%), Positives = 40/133 (30%), Gaps = 7/133 (5%)
Query: 29 TSIRELDLSH-NLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQ 87
+ L ++ L + N + N+ + N + + + +
Sbjct: 12 SGRENLYFQGSTALRPYHDVLSQWQRH--YNADRNRWHSAWRQANSNNPQIETRTGRALK 69
Query: 88 QIPKCIFHL--DNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQ 145
+ L L + + + P++ ++ L + + + ++P +
Sbjct: 70 ATADLLEDATQPGRVALELRSVPLPQF--PDQAFRLSHLQHMTIDAAGLMELPDTMQQFA 127
Query: 146 QLHHLNLVGNCFK 158
L L L N +
Sbjct: 128 GLETLTLARNPLR 140
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 88.6 bits (220), Expect = 5e-21
Identities = 30/162 (18%), Positives = 69/162 (42%), Gaps = 8/162 (4%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP--DLLNLRHLVYMNLENNKLETIDI 69
DLS+N ++++ + ++ LD H+ ++ + L+L L+Y+++ +
Sbjct: 382 DLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441
Query: 70 DF--NFGHLRELNLSSNKFQQ-IPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
L L ++ N F+ +F + NL L L+ +E+I+ + +L
Sbjct: 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS-WGVFDTLHRLQ 500
Query: 126 VLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYPRQDILQ 166
+L++S+NN+ + L L+ N + + +
Sbjct: 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH 542
Score = 87.8 bits (218), Expect = 7e-21
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 8/152 (5%)
Query: 12 DLSYNRLHVVNSKLFDI---TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETID 68
DLS N L + S+R LDLS N + + + L L +++ +++ L+ +
Sbjct: 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVT 415
Query: 69 IDFNFGH---LRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKL 124
F L L++S + IF L +L L + N ++ L
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475
Query: 125 TVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGN 155
T LDLS + +I + +L LN+ N
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507
Score = 87.4 bits (217), Expect = 1e-20
Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 9/162 (5%)
Query: 11 ADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDI 69
+L V + +S + +DLS N ++ L N L +++L ++ETI+
Sbjct: 16 YQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED 73
Query: 70 DF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
HL L L+ N Q F L +LE L+ + + + + ++ L
Sbjct: 74 KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL-ESFPIGQLITLKK 132
Query: 127 LDLSNNNIR--KIPYELGLAQQLHHLNLVGNCFKYPRQDILQ 166
L++++N I K+P L H++L N + + LQ
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174
Score = 84.7 bits (210), Expect = 8e-20
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 8/153 (5%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETID--- 68
+ +L + D+ ++ L L+ N ++ + L L Y++L N L
Sbjct: 313 SIIRCQLKQFPT--LDLPFLKSLTLTMNKG-SISFKKVALPSLSYLDLSRNALSFSGCCS 369
Query: 69 -IDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
D LR L+LS N + L+ L+ L ++ ++ + + + ++KL L
Sbjct: 370 YSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429
Query: 128 DLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKY 159
D+S N + L+ L + GN FK
Sbjct: 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462
Score = 83.9 bits (208), Expect = 2e-19
Identities = 36/154 (23%), Positives = 58/154 (37%), Gaps = 10/154 (6%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
DLS+N L ++ S F + + ++ LDLS I+ + L HL + L N +++
Sbjct: 38 DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP 97
Query: 70 DF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
L L K + L L+ L + +N I P + L
Sbjct: 98 GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 157
Query: 127 LDLSNNNIRKIPYEL-----GLAQQLHHLNLVGN 155
+DLS N I+ I Q L++ N
Sbjct: 158 VDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191
Score = 77.4 bits (191), Expect = 3e-17
Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 11/156 (7%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
DLS + + K + + + L L+ N IQ+ P L L + KL +++
Sbjct: 62 DLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES 121
Query: 70 DF--NFGHLRELNLSSNKFQQI--PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
L++LN++ N P +L NL + L+ N I+ I L +++
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI-TVNDLQFLRENP 180
Query: 126 ----VLDLSNNNIRKIPYELGLAQQLHHLNLVGNCF 157
LD+S N I I + +LH L L GN
Sbjct: 181 QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN 216
Score = 75.8 bits (187), Expect = 1e-16
Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 7/147 (4%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHN-LIQNLPPDLL-NLRHLVYMNLENNKLETID 68
D+SY + +F +TS+ L ++ N N ++ N +L +++L +LE I
Sbjct: 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS 489
Query: 69 IDF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
L+ LN+S N + + L +L L + N IE + + L
Sbjct: 490 WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS-KGILQHFPKSLA 548
Query: 126 VLDLSNNNIRKIPYELGLAQQLHHLNL 152
+L+NN++ I Q +
Sbjct: 549 FFNLTNNSVACICEHQKFLQWVKEQKQ 575
Score = 71.2 bits (175), Expect = 5e-15
Identities = 29/150 (19%), Positives = 55/150 (36%), Gaps = 12/150 (8%)
Query: 13 LSYNRLHVVNSKLFDI---TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETID 68
L + + + +I E L++ + L ++ M+L ++ ++
Sbjct: 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE 301
Query: 69 IDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
+ L++ + +Q P L L+ L L N + + K V + L+ LD
Sbjct: 302 DVPKHFKWQSLSIIRCQLKQFPT--LDLPFLKSLTLTMN---KGSISFKKVALPSLSYLD 356
Query: 129 LSNNNIRKIP---YELGLAQQLHHLNLVGN 155
LS N + Y L HL+L N
Sbjct: 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386
Score = 65.1 bits (159), Expect = 6e-13
Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 11/137 (8%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQ--NLPPDLLNLRHLVYMNLENNKLETID 68
+L + S + ++++L+++HN I LP NL +LV+++L N ++TI
Sbjct: 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169
Query: 69 IDFNFGHLR-------ELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKM 121
+ LR L++S N I F L L L N L +
Sbjct: 170 -VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL 228
Query: 122 QKLTVLDLSNNNIRKIP 138
L V L +
Sbjct: 229 AGLHVHRLILGEFKDER 245
Score = 62.4 bits (152), Expect = 6e-12
Identities = 21/178 (11%), Positives = 53/178 (29%), Gaps = 19/178 (10%)
Query: 12 DLSYNRL--HVVNSKLFDITSIRELDLSHNLIQNL-------PPDLLNLRHLVYMNLENN 62
L N +++ + L ++ + L ++ P + L +
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269
Query: 63 KLETIDIDF----NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKL 118
D ++ ++L+ + + H + L + +++
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF-KWQSLSIIRCQLKQFP----T 324
Query: 119 VKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYL 176
+ + L L L+ N ++ L L +L+L N + L +L
Sbjct: 325 LDLPFLKSLTLTMNKGSISFKKVAL-PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381
Score = 60.0 bits (146), Expect = 3e-11
Identities = 31/167 (18%), Positives = 68/167 (40%), Gaps = 18/167 (10%)
Query: 12 DLSYNRLHVVNSKLF--DITSIRELDLSHNLIQNLPPDLL-----NLRHLVYMNLENNKL 64
++++N +H + ++T++ +DLS+N IQ + + L N + + +++ N +
Sbjct: 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 193
Query: 65 ETIDID-FNFGHLRELNLSSNKF--QQIPKCIFHLDNLEILILNNNDIEEINQ-----PE 116
+ I F L EL L N + C+ +L L + L + ++ P
Sbjct: 194 DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253
Query: 117 KLVKMQKLTV--LDLSNNNIRKI-PYELGLAQQLHHLNLVGNCFKYP 160
+ + +T+ L+ N + + ++L G KY
Sbjct: 254 IMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL 300
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 88.5 bits (220), Expect = 5e-21
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 8/173 (4%)
Query: 9 EQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETI 67
E AD S+ +L V L T+I L+L+HN ++ LP + L +++ N + +
Sbjct: 7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL 64
Query: 68 DIDF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKL 124
+ + L+ LNL N+ Q+ F NL L L +N I++I + VK + L
Sbjct: 65 EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI-KNNPFVKQKNL 123
Query: 125 TVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYL 176
LDLS+N + + L L L N + + + L L L
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176
Score = 87.4 bits (217), Expect = 1e-20
Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 18/161 (11%)
Query: 12 DLSYNRLHVVNSKLFDI---TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETI 67
L L V+S ++ LDLS+N I N+ D+L L L ++L++N L +
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519
Query: 68 DIDFNFG----------HLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPE 116
N G HL LNL SN F +IP +F L L+I+ L N++ +
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL-PAS 578
Query: 117 KLVKMQKLTVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
L L+L N I + ++ + L L++ N
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619
Score = 84.7 bits (210), Expect = 9e-20
Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 10/154 (6%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
+S L ++ F + + L++ N I + ++ L +L Y++L N+ +
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370
Query: 70 DFN------FGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQ 122
L LNL+ NK +I F L +LE+L L N+I + ++ ++
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430
Query: 123 KLTVLDLSNNNIRKI-PYELGLAQQLHHLNLVGN 155
+ + LS N ++ L L L L
Sbjct: 431 NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464
Score = 83.5 bits (207), Expect = 2e-19
Identities = 38/160 (23%), Positives = 73/160 (45%), Gaps = 14/160 (8%)
Query: 12 DLSYNRLHVVNSKLFDI---TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKL--- 64
LS N++ + S+ DI +S+++L+LS N I+ P + L + L N +L
Sbjct: 151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS 210
Query: 65 --ETIDIDFNFGHLRELNLSSNKFQQIPKCIF---HLDNLEILILNNNDIEEINQPEKLV 119
E + ++ +R L+LS+++ F NL +L L+ N++ + +
Sbjct: 211 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG-NDSFA 269
Query: 120 KMQKLTVLDLSNNNIRKI-PYELGLAQQLHHLNLVGNCFK 158
+ +L L NNI+ + + L + +LNL + K
Sbjct: 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309
Score = 82.4 bits (204), Expect = 7e-19
Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 18/172 (10%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLI-QNLPPDLL-NLRHLVYMNLENNKLETID 68
+L+ N++ + S F + + LDL N I Q L L ++ + L NK +
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446
Query: 69 IDF--NFGHLRELNLSSNKFQQI---PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQK 123
+ L+ L L + + P L NL IL L+NN+I IN + L ++K
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN-DDMLEGLEK 505
Query: 124 LTVLDLSNNNIRKI---------PYELGLAQQLHHLNLVGNCFKYPRQDILQ 166
L +LDL +NN+ ++ Y L LH LNL N F ++ +
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557
Score = 78.1 bits (193), Expect = 2e-17
Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 12/159 (7%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPD---LLNLRHLVYMNLENNKLETI 67
DLS+N L + +++EL LS+N IQ L + + L + L +N+++
Sbjct: 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186
Query: 68 DID--FNFGHLRELNLSSNKFQ-QIPKCIF---HLDNLEILILNNNDIEEINQPE-KLVK 120
G L L L++ + + + + ++ L L+N+ + + +K
Sbjct: 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246
Query: 121 MQKLTVLDLSNNNIRKI-PYELGLAQQLHHLNLVGNCFK 158
LT+LDLS NN+ + QL + L N +
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285
Score = 74.3 bits (183), Expect = 5e-16
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 13/136 (9%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPD---------LLNLRHLVYMNLEN 61
DLS N + +N + + + LDL HN + L L L HL +NLE+
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545
Query: 62 NKLETIDIDF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKL 118
N + I ++ + L+ ++L N +P +F + +L+ L L N I + +
Sbjct: 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605
Query: 119 VKMQKLTVLDLSNNNI 134
+ LT LD+ N
Sbjct: 606 PAFRNLTELDMRFNPF 621
Score = 73.1 bits (180), Expect = 9e-16
Identities = 31/149 (20%), Positives = 59/149 (39%), Gaps = 11/149 (7%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDL-----LNLRHLVYMNLENNKLE 65
++ N + + S +F + +++ L LS++ L L +NL NK+
Sbjct: 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394
Query: 66 TIDID--FNFGHLRELNLSSNKFQQI--PKCIFHLDNLEILILNNNDIEEINQPEKLVKM 121
I+ D GHL L+L N+ Q + L+N+ + L+ N ++ +
Sbjct: 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT-RNSFALV 453
Query: 122 QKLTVLDLSNNNIRKIPYELGLAQQLHHL 150
L L L ++ + Q L +L
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNL 482
Score = 71.6 bits (176), Expect = 3e-15
Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 19/166 (11%)
Query: 12 DLSYNRLHVVNSKLFDI----TSIRELDLSHNLIQNLPPDL---LNLRHLVYMNLENNKL 64
L+ +L ++ + TSIR L LS++ + L +L ++L N L
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260
Query: 65 ETIDIDF--NFGHLRELNLSSNKFQQI-PKCIFHLDNLEILILNNNDIEEIN-------- 113
+ D L L N Q + + L N+ L L + ++
Sbjct: 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320
Query: 114 QPEKLVKMQKLTVLDLSNNNIRKI-PYELGLAQQLHHLNLVGNCFK 158
++ L L++ +N+I I L +L+L +
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366
Score = 71.6 bits (176), Expect = 3e-15
Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 9/135 (6%)
Query: 29 TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGH---LRELNLSSNK 85
S D SH + +P DL ++ +NL +N+L + NF L L++ N
Sbjct: 4 VSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNT 60
Query: 86 FQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI-PYELGL 143
++ + L L++L L +N++ +++ + LT L L +N+I+KI
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119
Query: 144 AQQLHHLNLVGNCFK 158
+ L L+L N
Sbjct: 120 QKNLITLDLSHNGLS 134
Score = 57.3 bits (139), Expect = 3e-10
Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 14/131 (10%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
+L N + ++F D+ ++ +DL N + LP + N L +NL+ N + +++
Sbjct: 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601
Query: 70 DF---NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEI------NQPEKLVK 120
F +L EL++ N F C + + + +I E+ N P
Sbjct: 602 KVFGPAFRNLTELDMRFNPFDCT--CESIAWFVNWINETHTNIPELSSHYLCNTPPHY-H 658
Query: 121 MQKLTVLDLSN 131
+ + D S+
Sbjct: 659 GFPVRLFDTSS 669
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 88.2 bits (219), Expect = 6e-21
Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 8/164 (4%)
Query: 12 DLSYNRL---HVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETI- 67
DLS N L + F TS++ LDLS N + + + L L L +++ +++ L+ +
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 412
Query: 68 --DIDFNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKL 124
+ + +L L++S + IF L +LE+L + N +E P+ +++ L
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472
Query: 125 TVLDLSNNNIRKI-PYELGLAQQLHHLNLVGNCFKYPRQDILQK 167
T LDLS + ++ P L LN+ N F +
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516
Score = 85.9 bits (213), Expect = 3e-20
Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 8/168 (4%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD--LLNLRHLVYMNLENNKLETIDI 69
DLS+N + ++S + + LD H+ ++ + L+LR+L+Y+++ +
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
Query: 70 DF--NFGHLRELNLSSNKFQ-QIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
L L ++ N FQ IF L NL L L+ +E+++ P + L
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQ 497
Query: 126 VLDLSNNNIRK-IPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFL 172
VL++S+NN + L L+ N ++ LQ L
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 545
Score = 83.2 bits (206), Expect = 4e-19
Identities = 33/163 (20%), Positives = 68/163 (41%), Gaps = 9/163 (5%)
Query: 11 ADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDI 69
+ + L S + LDLS N +++L + L ++L +++TI+
Sbjct: 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69
Query: 70 DF--NFGHLRELNLSSNKFQQI-PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
+ HL L L+ N Q + L +L+ L+ ++ + + + ++ L
Sbjct: 70 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKE 128
Query: 127 LDLSNNNIR--KIPYELGLAQQLHHLNLVGNCFKYPRQDILQK 167
L++++N I+ K+P L HL+L N + L+
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171
Score = 81.6 bits (202), Expect = 1e-18
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 6/147 (4%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
DLS+N L + S F ++ LDLS IQ + +L HL + L N ++++ +
Sbjct: 34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93
Query: 70 D--FNFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
L++L I HL L+ L + +N I+ PE + L
Sbjct: 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153
Query: 127 LDLSNNNIRKI-PYELGLAQQLHHLNL 152
LDLS+N I+ I +L + Q+ LNL
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNL 180
Score = 81.6 bits (202), Expect = 1e-18
Identities = 33/153 (21%), Positives = 63/153 (41%), Gaps = 10/153 (6%)
Query: 12 DLSYNRLHVV--NSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETID 68
D ++ L + S + ++ LD+SH + + L L + + N +
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461
Query: 69 IDFNFG---HLRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKL 124
+ F +L L+LS + +Q+ F+ L +L++L +++N+ + + L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSL 520
Query: 125 TVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
VLD S N+I + L LNL N
Sbjct: 521 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553
Score = 79.7 bits (197), Expect = 5e-18
Identities = 30/152 (19%), Positives = 62/152 (40%), Gaps = 8/152 (5%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDI-- 69
+L + + S++ L + N ++L L +++L N L
Sbjct: 310 ELVNCKFGQFPTLKL--KSLKRLTFTSNKG-GNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366
Query: 70 --DFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
DF L+ L+LS N + L+ LE L +++++++++ + ++ L L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426
Query: 128 DLSNNNIRKI-PYELGLAQQLHHLNLVGNCFK 158
D+S+ + R L L + GN F+
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458
Score = 73.9 bits (182), Expect = 5e-16
Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 6/129 (4%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHN-LIQNLPPDLL-NLRHLVYMNLENNKLETID 68
D+S+ V + +F+ ++S+ L ++ N +N PD+ LR+L +++L +LE +
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486
Query: 69 IDF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
+ L+ LN+S N F + + L++L++L + N I + E L
Sbjct: 487 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 546
Query: 126 VLDLSNNNI 134
L+L+ N+
Sbjct: 547 FLNLTQNDF 555
Score = 67.4 bits (165), Expect = 9e-14
Identities = 31/150 (20%), Positives = 50/150 (33%), Gaps = 24/150 (16%)
Query: 30 SIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQI 89
+ LD + I +L L N+ +L + +E + + L L + KF Q
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSF---SLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319
Query: 90 PKCIF--------------------HLDNLEILILNNNDIEEINQ-PEKLVKMQKLTVLD 128
P L +LE L L+ N + + L LD
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379
Query: 129 LSNNNIRKIPYELGLAQQLHHLNLVGNCFK 158
LS N + + +QL HL+ + K
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLK 409
Score = 63.5 bits (155), Expect = 2e-12
Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 11/134 (8%)
Query: 12 DLSYNRLH-VVNSKLFDITSIRELDLSHNLIQ--NLPPDLLNLRHLVYMNLENNKLETID 68
L + N + + +++EL+++HNLIQ LP NL +L +++L +NK+++I
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI- 164
Query: 69 IDFNFGHLR-------ELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKM 121
+ L L+LS N I F L L L NN + +
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224
Query: 122 QKLTVLDLSNNNIR 135
L V L R
Sbjct: 225 AGLEVHRLVLGEFR 238
Score = 53.9 bits (130), Expect = 4e-09
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
DLS +L ++ F ++S++ L++SHN +L L L ++ N + T
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535
Query: 70 DF---NFGHLRELNLSSNKFQ 87
L LNL+ N F
Sbjct: 536 QELQHFPSSLAFLNLTQNDFA 556
Score = 44.2 bits (105), Expect = 8e-06
Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 78 ELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI 137
F +IP + + + L L+ N + + +L VLDLS I+ I
Sbjct: 11 TYQCMELNFYKIPDNLPF--STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTI 67
Query: 138 -PYELGLAQQLHHLNLVGN 155
L L L GN
Sbjct: 68 EDGAYQSLSHLSTLILTGN 86
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 86.1 bits (214), Expect = 3e-20
Identities = 51/155 (32%), Positives = 74/155 (47%), Gaps = 11/155 (7%)
Query: 12 DLSYNRLH-VVNSKLFDI--TSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLENNKLE-T 66
DLS N + L +++EL L +N +PP L N LV ++L N L T
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433
Query: 67 IDIDF-NFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIE-EINQPEKLVKMQK 123
I + LR+L L N + +IP+ + ++ LE LIL+ ND+ EI P L
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI--PSGLSNCTN 491
Query: 124 LTVLDLSNNNIR-KIPYELGLAQQLHHLNLVGNCF 157
L + LSNN + +IP +G + L L L N F
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Score = 86.1 bits (214), Expect = 3e-20
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 29/175 (16%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLENN-------- 62
D+S N L D ++++ LD+S N + + + L +N+ +N
Sbjct: 206 DVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265
Query: 63 ----KLETID-------------IDFNFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILIL 104
L+ + + L L+LS N F +P LE L L
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325
Query: 105 NNNDIEEINQPEKLVKMQKLTVLDLSNNNIR-KIPYELG-LAQQLHHLNLVGNCF 157
++N+ + L+KM+ L VLDLS N ++P L L+ L L+L N F
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380
Score = 75.7 bits (187), Expect = 1e-16
Identities = 40/150 (26%), Positives = 59/150 (39%), Gaps = 7/150 (4%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLE-TIDID 70
+S N++ + ++ LD+S N P L + L ++++ NKL
Sbjct: 184 AISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA 242
Query: 71 F-NFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
L+ LN+SSN+F IP L +L+ L L N LT LD
Sbjct: 243 ISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300
Query: 129 LSNNNIR-KIPYELGLAQQLHHLNLVGNCF 157
LS N+ +P G L L L N F
Sbjct: 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Score = 74.9 bits (185), Expect = 3e-16
Identities = 46/172 (26%), Positives = 68/172 (39%), Gaps = 33/172 (19%)
Query: 12 DLSYNRLH-VVNSKLFDITSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLENNK------ 63
L N + L + + + L LS N + +P L +L L + L N
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Query: 64 --------LETIDIDFN------------FGHLRELNLSSNKFQ-QIPKCIFHLDNLEIL 102
LET+ +DFN +L ++LS+N+ +IPK I L+NL IL
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
Query: 103 ILNNNDIE-EINQPEKLVKMQKLTVLDLSNNNIR-KIPYELGLAQQLHHLNL 152
L+NN I P +L + L LDL+ N IP + N
Sbjct: 520 KLSNNSFSGNI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569
Score = 74.6 bits (184), Expect = 3e-16
Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 17/158 (10%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQ-NLPPD--LLNLRHLVYMNLENNKLE--- 65
LS + ++ S S+ LDLS N + + L + L ++N+ +N L+
Sbjct: 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 66 TIDIDFNFGHLRELNLSSNKFQ-QIPKCIF---HLDNLEILILNNNDIE-EINQPEKLVK 120
+ L L+LS+N L+ L ++ N I +++ + +
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD----VSR 198
Query: 121 MQKLTVLDLSNNNIR-KIPYELGLAQQLHHLNLVGNCF 157
L LD+S+NN IP LG L HL++ GN
Sbjct: 199 CVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKL 235
Score = 73.4 bits (181), Expect = 8e-16
Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 29 TSIRELDLSHN----LIQNLPPDLLNLRHLVYMNLENNKLE-TIDIDFNFGHLRELNLSS 83
+ +DLS + LL+L L + L N+ + ++ L L+LS
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109
Query: 84 NKFQ-QIP--KCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR-KIPY 139
N + + L+ L +++N ++ + +K+ L VLDLS N+I
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169
Query: 140 ELGLAQQLH---HLNLVGNCF 157
L+ HL + GN
Sbjct: 170 GWVLSDGCGELKHLAISGNKI 190
Score = 72.2 bits (178), Expect = 2e-15
Identities = 32/174 (18%), Positives = 56/174 (32%), Gaps = 27/174 (15%)
Query: 12 DLSYNRLH-VVNSKLFDITSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLENNKLE-TID 68
L N L + +L + ++ L L N + +P L N +L +++L NN+L I
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Query: 69 IDF-NFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIE---------------- 110
+L L LS+N F IP + +L L LN N
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567
Query: 111 ---EINQPEKLVKMQKLTVLDLSNNNIR---KIPYELGLAQQLHHLNLVGNCFK 158
+ + + N + +L + N+ +
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621
Score = 70.3 bits (173), Expect = 9e-15
Identities = 32/152 (21%), Positives = 53/152 (34%), Gaps = 9/152 (5%)
Query: 12 DLSYNRLH-VVNSKLFDITSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLENNKLETIDI 69
LS N + ++L D S+ LDL+ NL +P + + N K
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR--YVY 577
Query: 70 DFNFGHLRELNLSSNKFQ---QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
N G +E + + N + + + L + + + +
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG-HTSPTFDNNGSMMF 636
Query: 127 LDLSNNNIR-KIPYELGLAQQLHHLNLVGNCF 157
LD+S N + IP E+G L LNL N
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668
Score = 69.9 bits (172), Expect = 1e-14
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 11/153 (7%)
Query: 12 DLSYNRLH-VVNSKLFDITSIRELDLSHNLIQ---NLPPDLLNLRHLVYMNLENNKL--E 65
++ N + + + +E + NL++ L L N+ +
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623
Query: 66 TIDIDFNFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIE-EINQPEKLVKMQK 123
T N G + L++S N IPK I + L IL L +NDI I P+++ ++
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI--PDEVGDLRG 681
Query: 124 LTVLDLSNNNIR-KIPYELGLAQQLHHLNLVGN 155
L +LDLS+N + +IP + L ++L N
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714
Score = 65.3 bits (160), Expect = 5e-13
Identities = 32/140 (22%), Positives = 65/140 (46%), Gaps = 10/140 (7%)
Query: 2 IAKEAQVEQADLSYNRLH---VVNSKLFDITSIRELDLSHNLIQ-NLPPDLLNLRHLVYM 57
I + ++ + N L + + +L +++ +++ + + P N ++++
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637
Query: 58 NLENNKLE-TIDIDF-NFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIE-EIN 113
++ N L I + + +L LNL N IP + L L IL L++N ++ I
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI- 696
Query: 114 QPEKLVKMQKLTVLDLSNNN 133
P+ + + LT +DLSNNN
Sbjct: 697 -PQAMSALTMLTEIDLSNNN 715
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 85.5 bits (212), Expect = 5e-20
Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 8/151 (5%)
Query: 11 ADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDI 69
D + S L +++ LDLS N I + DL +L + L+++++ TI+
Sbjct: 10 CDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67
Query: 70 D--FNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
D ++ G L L+LS N + F L +L+ L L N + + + L
Sbjct: 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127
Query: 127 LDLSNNNIRKIPYELGLA--QQLHHLNLVGN 155
L + N + A L+ L +
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158
Score = 83.6 bits (207), Expect = 2e-19
Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 11/148 (7%)
Query: 12 DLSYNRLHVVNSKLFDI---TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETID 68
LS N L + + ++ LD+S N +P + ++NL + + +
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVK 426
Query: 69 IDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
L L++S+N L L+ L ++ N ++ + L V+
Sbjct: 427 TC-IPQTLEVLDVSNNNLDSFSL---FLPRLQELYISRNKLKTL---PDASLFPVLLVMK 479
Query: 129 LSNNNIRKIPYE-LGLAQQLHHLNLVGN 155
+S N ++ +P L + L N
Sbjct: 480 ISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
Score = 80.5 bits (199), Expect = 3e-18
Identities = 25/123 (20%), Positives = 53/123 (43%), Gaps = 6/123 (4%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
D+S N H + +R L+LS I+ + + + L +++ NN L++ +
Sbjct: 393 DISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSFSL-- 448
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
L+EL +S NK + +P L ++ ++ N ++ + ++ L + L
Sbjct: 449 FLPRLQELYISRNKLKTLPDASL-FPVLLVMKISRNQLKSVP-DGIFDRLTSLQKIWLHT 506
Query: 132 NNI 134
N
Sbjct: 507 NPW 509
Score = 78.6 bits (194), Expect = 1e-17
Identities = 37/175 (21%), Positives = 72/175 (41%), Gaps = 9/175 (5%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
DLS+N++ + +++ L L + I + D +L L +++L +N L ++
Sbjct: 32 DLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91
Query: 70 DF--NFGHLRELNLSSNKFQQIPKCIF--HLDNLEILIL-NNNDIEEINQPEKLVKMQKL 124
+ L+ LNL N +Q + +L NL+ L + N EI + + L
Sbjct: 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI-RRIDFAGLTSL 150
Query: 125 TVLDLSNNNIRKI-PYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRD 178
L++ ++R L + +HHL L + + + + LRD
Sbjct: 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205
Score = 77.8 bits (192), Expect = 2e-17
Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 17/181 (9%)
Query: 12 DLSYNRLHVVNSKLFDI---------TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLEN 61
D + N L N D+ +IR L + + + L + + +EN
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319
Query: 62 NKLETIDIDF--NFGHLRELNLSSNKFQQI----PKCIFHLDNLEILILNNNDIEEI-NQ 114
+K+ + F + L L+LS N + C +L+ L+L+ N + +
Sbjct: 320 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT 379
Query: 115 PEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLS 174
E L+ ++ LT LD+S N +P +++ LNL + + I Q +S
Sbjct: 380 GEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVS 439
Query: 175 Y 175
Sbjct: 440 N 440
Score = 51.6 bits (124), Expect = 3e-08
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
D+S N L + L ++EL +S N ++ LP L L+ M + N+L+++
Sbjct: 437 DVSNNNLDSFSLFL---PRLQELYISRNKLKTLPDASL-FPVLLVMKISRNQLKSVPDGI 492
Query: 72 --NFGHLRELNLSSNKFQ 87
L+++ L +N +
Sbjct: 493 FDRLTSLQKIWLHTNPWD 510
Score = 47.8 bits (114), Expect = 6e-07
Identities = 23/170 (13%), Positives = 49/170 (28%), Gaps = 23/170 (13%)
Query: 12 DLSYNRLHVVNSKLFDI-TSIRELDLSHNLIQNLPPD------------LLNLRHLVYMN 58
L + + DI +S+R L+L + L R V +
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237
Query: 59 LENNKLETI-DIDFNFGHLRELNLSSNKFQQIPKCIF----HLDNLEILILNNNDIEEIN 113
N+L + + + + N L +E + + I +
Sbjct: 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297
Query: 114 ----QPEKLVKMQKLTVLDLSNNNIRKIPYELG-LAQQLHHLNLVGNCFK 158
++K+ + + N+ + +P + L L+L N
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 83.5 bits (207), Expect = 5e-20
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 5/132 (3%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
DLS+N L + S F ++ LDLS IQ + +L HL + L N ++++ +
Sbjct: 34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93
Query: 70 DF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
L++L + HL L+ L + +N I+ PE + L
Sbjct: 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153
Query: 127 LDLSNNNIRKIP 138
LDLS+N I+ I
Sbjct: 154 LDLSSNKIQSIY 165
Score = 83.1 bits (206), Expect = 7e-20
Identities = 32/146 (21%), Positives = 64/146 (43%), Gaps = 9/146 (6%)
Query: 29 TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNK 85
S + LDLS N +++L + L ++L +++TI+ + HL L L+ N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 86 FQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE---L 141
Q + F L +L+ L+ ++ + + + ++ L L++++N I+
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 142 GLAQQLHHLNLVGNCFKYPRQDILQK 167
L L HL+L N + L+
Sbjct: 147 NLT-NLEHLDLSSNKIQSIYCTDLRV 171
Score = 79.2 bits (196), Expect = 2e-18
Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 15/156 (9%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
L+ N + + F ++S+++L + +L + +L+ L +N+ +N +++ +
Sbjct: 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141
Query: 70 DFNF---GHLRELNLSSNKFQQIPKCIF-HLDNLEI----LILNNNDIEEINQPEKLVKM 121
F +L L+LSSNK Q I L + + L L+ N + I K
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI--QPGAFKE 199
Query: 122 QKLTVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
+L L L N ++ +P + L L + L N
Sbjct: 200 IRLKELALDTNQLKSVPDGIFDRL-TSLQKIWLHTN 234
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 85.3 bits (211), Expect = 5e-20
Identities = 32/175 (18%), Positives = 65/175 (37%), Gaps = 9/175 (5%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
+ N + V+ + + L++N I L + Y++L+ N+++T++
Sbjct: 105 HAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162
Query: 71 FNFGH---LRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
L LNL N + + L+ L L++N + + + +T +
Sbjct: 163 ELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFM--GPEFQSAAGVTWI 219
Query: 128 DLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKLPS 182
L NN + I L +Q L H +L GN F + + + +
Sbjct: 220 SLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274
Score = 83.0 bits (205), Expect = 4e-19
Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 8/145 (5%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
+LS N L+ L ++++R LDL++N +Q L + ++ NN + +
Sbjct: 64 NLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCS- 117
Query: 72 NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLS 130
+ + L++NK + ++ L L N+I+ +N E L L+L
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177
Query: 131 NNNIRKIPYELGLAQQLHHLNLVGN 155
N I + ++ +L L+L N
Sbjct: 178 YNFIYDVKGQVVF-AKLKTLDLSSN 201
Score = 82.6 bits (204), Expect = 5e-19
Identities = 32/161 (19%), Positives = 59/161 (36%), Gaps = 5/161 (3%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL--NLRHLVYMNLENNKLETID 68
L+ N++ ++ + ++ LDL N I + L + L ++NL+ N + +
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185
Query: 69 IDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
F L+ L+LSSNK + + + L NN + I + L Q L D
Sbjct: 186 GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI--EKALRFSQNLEHFD 243
Query: 129 LSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGT 169
L N ++ + K ++ T
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284
Score = 72.6 bits (178), Expect = 1e-15
Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 11/147 (7%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
++ + L + L +++ELDLS N + + L L +NL +N L
Sbjct: 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD 75
Query: 70 DFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDL 129
+ LR L+L++N Q++ ++E L NN+I ++ + Q + L
Sbjct: 76 LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCS----RGQGKKNIYL 127
Query: 130 SNNNIRKIP-YELGLAQQLHHLNLVGN 155
+NN I + + G ++ +L+L N
Sbjct: 128 ANNKITMLRDLDEGCRSRVQYLDLKLN 154
Score = 68.3 bits (167), Expect = 5e-14
Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 12/132 (9%)
Query: 27 DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSS 83
+ + ++ + ++ L + ++ ++L N L I F L LNLSS
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67
Query: 84 NKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGL 143
N + + L L L LNNN ++E+ + L +NNNI ++ G
Sbjct: 68 NVLYETLD-LESLSTLRTLDLNNNYVQELLV------GPSIETLHAANNNISRVSCSRG- 119
Query: 144 AQQLHHLNLVGN 155
Q ++ L N
Sbjct: 120 -QGKKNIYLANN 130
Score = 57.2 bits (138), Expect = 3e-10
Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 10/121 (8%)
Query: 49 LNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILN 105
N + ++ L+ + +++EL+LS N QI LE+L L+
Sbjct: 7 QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66
Query: 106 NNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDIL 165
+N + E L + L LDL+NN ++++ + L+ N
Sbjct: 67 SNVLYETLD---LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSRG 119
Query: 166 Q 166
Q
Sbjct: 120 Q 120
Score = 53.7 bits (129), Expect = 4e-09
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 68 DIDFNFGHLRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
+I N + ++ + +Q + N++ L L+ N + +I L KL +
Sbjct: 4 EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLEL 62
Query: 127 LDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
L+LS+N + + +L L L+L N
Sbjct: 63 LNLSSNVLYETL-DLESLSTLRTLDLNNN 90
Score = 44.8 bits (106), Expect = 5e-06
Identities = 14/139 (10%), Positives = 44/139 (31%), Gaps = 3/139 (2%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
+ + + + RE+D + + + + + + + L+ +
Sbjct: 319 SGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSN 378
Query: 71 FNFGH--LRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
H L + ++ L++L EE+ ++ V+ + D
Sbjct: 379 GRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWD 438
Query: 129 LSNNNIRKIPYELGLAQQL 147
+ + ++ E ++L
Sbjct: 439 MYQHKETQLAEENARLKKL 457
Score = 41.8 bits (98), Expect = 5e-05
Identities = 14/132 (10%), Positives = 40/132 (30%), Gaps = 10/132 (7%)
Query: 29 TSIRELDLSHNLIQNLPPDL------LNLRHLVYMNLENNKLETIDID-FNFGHLRELNL 81
T ++LP L + ++ + ++ E ++ + N RE++
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDA 343
Query: 82 SSNKFQQIPKCIFH-LDNLEILILNNNDIEEI--NQPEKLVKMQKLTVLDLSNNNIRKIP 138
+++ + + L ++E N ++ + ++
Sbjct: 344 LKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHAT 403
Query: 139 YELGLAQQLHHL 150
E Q L +
Sbjct: 404 EEQSPLQLLRAI 415
Score = 36.7 bits (85), Expect = 0.002
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 89 IPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI-PYELGLAQQL 147
I + + + +I + ++ +++ + LDLS N + +I +L +L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 148 HHLNLVGN 155
LNL N
Sbjct: 61 ELLNLSSN 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 84.9 bits (210), Expect = 8e-20
Identities = 34/158 (21%), Positives = 62/158 (39%), Gaps = 16/158 (10%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
N+L + + ++EL +S N + +LP L L NN+L ++
Sbjct: 167 WAYNNQLTSLPM---LPSGLQELSVSDNQLASLPTLPSELYKL---WAYNNRLTSLPA-- 218
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
L+EL +S N+ +P L+ L+++ N + + P L L +
Sbjct: 219 LPSGLKELIVSGNRLTSLPV---LPSELKELMVSGNRLTSL--PMLP---SGLLSLSVYR 270
Query: 132 NNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGT 169
N + ++P L +NL GN L++ T
Sbjct: 271 NQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308
Score = 76.5 bits (188), Expect = 8e-17
Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 19/150 (12%)
Query: 6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLE 65
A + + N L + + +R L++S N + +LP L L + L
Sbjct: 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLP 117
Query: 66 TIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
+ L +L + N+ +P L+ L +++N + + P +L
Sbjct: 118 AL-----PSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASL--PALP---SELC 164
Query: 126 VLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
L NN + +P L L++ N
Sbjct: 165 KLWAYNNQLTSLPMLPS---GLQELSVSDN 191
Score = 74.9 bits (184), Expect = 3e-16
Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 15/127 (11%)
Query: 29 TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQ 88
L++ + + LP L H+ + + +N L ++ LR L +S N+
Sbjct: 40 NGNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTS 95
Query: 89 IPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLH 148
+P L L I + + L L + N + +P L
Sbjct: 96 LPVLPPGLLELSIFSNPLTHLPALP--------SGLCKLWIFGNQLTSLPVLPP---GLQ 144
Query: 149 HLNLVGN 155
L++ N
Sbjct: 145 ELSVSDN 151
Score = 51.4 bits (123), Expect = 3e-08
Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 5/123 (4%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
+S NRL + + + L + N + LP L++L +NLE N L +
Sbjct: 247 MVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ- 302
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEI-LILNNNDIEEINQPEKLVKMQKLTVLDLS 130
+ S + L L D + + + +
Sbjct: 303 ALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQE 362
Query: 131 NNN 133
+N
Sbjct: 363 DNA 365
Score = 42.6 bits (100), Expect = 3e-05
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 76 LRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR 135
E + Q++ C + +L + + + + P+ L +T L + +NN+
Sbjct: 21 AEESRGRAAVVQKMRAC--LNNGNAVLNVGESGLTTL--PDCL--PAHITTLVIPDNNLT 74
Query: 136 KIPYELGLAQQLHHLNLVGN 155
+P +L L + GN
Sbjct: 75 SLPALPP---ELRTLEVSGN 91
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 85.0 bits (210), Expect = 8e-20
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 9/145 (6%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
++SYN L S L ++ ELD SHN I + + L + L++N L
Sbjct: 198 NVSYNLL----STLAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLTDTAWLL 251
Query: 72 NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLS 130
N+ L E++LS N+ ++I F + LE L ++NN + + + L VLDLS
Sbjct: 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLS 309
Query: 131 NNNIRKIPYELGLAQQLHHLNLVGN 155
+N++ + +L +L L N
Sbjct: 310 HNHLLHVERNQPQFDRLENLYLDHN 334
Score = 81.9 bits (202), Expect = 9e-19
Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 9/156 (5%)
Query: 2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLEN 61
+A VE+ D S+N ++VV + + L L HN + + LLN LV ++L
Sbjct: 207 LAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLTDT-AWLLNYPGLVEVDLSY 263
Query: 62 NKLETIDID--FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLV 119
N+LE I L L +S+N+ + + L++L L++N + +
Sbjct: 264 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV--ERNQP 321
Query: 120 KMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
+ +L L L +N+I + L L +L L N
Sbjct: 322 QFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 355
Score = 81.1 bits (200), Expect = 2e-18
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 22/169 (13%)
Query: 7 QVEQADLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKL 64
QVE +L+ ++ +++ F +I++L + N I+ LPP + N+ L + LE N L
Sbjct: 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135
Query: 65 ETIDIDF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEI--------- 112
++ N L L++S+N ++I F +L+ L L++N + +
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 195
Query: 113 ------NQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
N L + LD S+N+I + + +L L L N
Sbjct: 196 HANVSYNLLSTLAIPIAVEELDASHNSINVVR--GPVNVELTILKLQHN 242
Score = 76.9 bits (189), Expect = 5e-17
Identities = 31/146 (21%), Positives = 59/146 (40%), Gaps = 8/146 (5%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
L +N L L + + E+DLS+N ++ + ++ L + + NN+L +++
Sbjct: 238 KLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 296
Query: 71 F-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDL 129
L+ L+LS N + + D LE L L++N I + L L L
Sbjct: 297 GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLS----THHTLKNLTL 352
Query: 130 SNNNIRKIPYELGLAQQLHHLNLVGN 155
S+N+ L + + +
Sbjct: 353 SHNDWDCNSL-RALFRNVARPAVDDA 377
Score = 76.1 bits (187), Expect = 1e-16
Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 6/139 (4%)
Query: 22 NSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDIDF--NFGHLRE 78
+ + + + + ++ ++ LP LL + R + +NL + ++E ID +++
Sbjct: 44 GFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQK 103
Query: 79 LNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI 137
L + N + +P +F ++ L +L+L ND+ + KLT L +SNNN+ +I
Sbjct: 104 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERI 162
Query: 138 PYELGLA-QQLHHLNLVGN 155
+ A L +L L N
Sbjct: 163 EDDTFQATTSLQNLQLSSN 181
Score = 75.3 bits (185), Expect = 2e-16
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 14/147 (9%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
+S N L + F TS++ L LS N + ++ L+ +L H N+ N L T+ I
Sbjct: 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA---NVSYNLLSTLAI 209
Query: 70 DFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDL 129
+ EL+ S N + + L IL L +N++ + L+ L +DL
Sbjct: 210 PIA---VEELDASHNSINVVRGPVNV--ELTILKLQHNNLTDTAW---LLNYPGLVEVDL 261
Query: 130 SNNNIRKIPYE-LGLAQQLHHLNLVGN 155
S N + KI Y Q+L L + N
Sbjct: 262 SYNELEKIMYHPFVKMQRLERLYISNN 288
Score = 68.0 bits (166), Expect = 6e-14
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 4/123 (3%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID 70
DLSYN L + F + + L +S+N + L + L ++L +N L ++ +
Sbjct: 260 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERN 319
Query: 71 -FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDL 129
F L L L N + H L+ L L++ND + + + + V D
Sbjct: 320 QPQFDRLENLYLDHNSIVTLKLSTHH--TLKNLTLSHNDWDCNSLRALFRNVARPAVDDA 377
Query: 130 SNN 132
+
Sbjct: 378 DQH 380
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 84.1 bits (208), Expect = 2e-19
Identities = 32/152 (21%), Positives = 67/152 (44%), Gaps = 14/152 (9%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
DLS+ + +NS++F + ++ L+L++N I + + L +L +NL N L +
Sbjct: 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331
Query: 70 D--FNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
+ + ++L N I F L+ L+ L L +N + I+ + +
Sbjct: 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF------IPSIPD 385
Query: 127 LDLSNNNIRKIPYELGLAQQLHHLNLVGNCFK 158
+ LS N + +P + + ++L N +
Sbjct: 386 IFLSGNKLVTLPK---INLTANLIHLSENRLE 414
Score = 81.4 bits (201), Expect = 1e-18
Identities = 40/175 (22%), Positives = 65/175 (37%), Gaps = 11/175 (6%)
Query: 11 ADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLE-TID 68
A + L V + + L LS N I+ + L L + L + TID
Sbjct: 9 AFYRFCNLTQV---PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID 65
Query: 69 IDF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEIN-QPEKLVKMQKL 124
+ N +LR L+L S+K + F L +L L L + + + ++ L
Sbjct: 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125
Query: 125 TVLDLSNNNIRKIPYELGLAQ--QLHHLNLVGNCFKYPRQDILQKGTPFLLSYLR 177
T LDLS N IR + + L ++ N + L+ LS+
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Score = 80.6 bits (199), Expect = 3e-18
Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 16/175 (9%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD--LLNLRHLVYMNLENNKLETIDI 69
LS N+L + + + LS N ++NL LL + HL + L N+ +
Sbjct: 387 FLSGNKLVTLPKINL---TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443
Query: 70 DFNFG---HLRELNLSSNKFQQIPKCIF------HLDNLEILILNNNDIEEINQPEKLVK 120
D L +L L N Q + L +L++L LN+N + + P
Sbjct: 444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL-PPGVFSH 502
Query: 121 MQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSY 175
+ L L L++N + + + L L L++ N P D+ + +++
Sbjct: 503 LTALRGLSLNSNRLTVLSHND-LPANLEILDISRNQLLAPNPDVFVSLSVLDITH 556
Score = 74.8 bits (184), Expect = 3e-16
Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 17/158 (10%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
DL N L + + I SI ++ LS N + LP L + +L N+LE +DI +
Sbjct: 368 DLRDNAL----TTIHFIPSIPDIFLSGNKLVTLPKINLTANLI---HLSENRLENLDILY 420
Query: 72 NFG---HLRELNLSSNKFQQIPKCIF--HLDNLEILILNNNDIEEINQ----PEKLVKMQ 122
HL+ L L+ N+F +LE L L N ++ + + +
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480
Query: 123 KLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKY 159
L VL L++N + +P L L+L N
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518
Score = 74.8 bits (184), Expect = 3e-16
Identities = 37/171 (21%), Positives = 60/171 (35%), Gaps = 27/171 (15%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETID- 68
+LSYN L + S F + + +DL N I + L L ++L +N L TI
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF 379
Query: 69 ----------------IDFNFGHLRELNLSSNKFQQIPKCIF--HLDNLEILILNNNDIE 110
+ ++LS N+ + + F + +L+ILILN N
Sbjct: 380 IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439
Query: 111 EINQPEKLVKMQKLTVLDLSNNNIRKIPYE------LGLAQQLHHLNLVGN 155
+ + + L L L N ++ L L L N
Sbjct: 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490
Score = 64.1 bits (156), Expect = 2e-12
Identities = 32/176 (18%), Positives = 60/176 (34%), Gaps = 30/176 (17%)
Query: 12 DLSYNRLHVVNSKLF--DITSIRELDLSHNLIQNLPPDL---LNLRHLVYMNLENNKLET 66
DLS N++ + + S++ +D S N I + L + L + +L N L +
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS 188
Query: 67 IDID--------FNFGHLRELNLSSNKFQQIPKCIFH-------------LDNLEILILN 105
F L L++S N + F ++
Sbjct: 189 RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248
Query: 106 NNDIEEINQP--EKLVKMQKLTVLDLSNNNIRKI-PYELGLAQQLHHLNLVGNCFK 158
++I++ +Q L + + LDLS+ + + + L LNL N
Sbjct: 249 FHNIKDPDQNTFAGLARSS-VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303
Score = 63.3 bits (154), Expect = 3e-12
Identities = 24/128 (18%), Positives = 54/128 (42%), Gaps = 9/128 (7%)
Query: 12 DLSYNRLHVVNSKLFD------ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKL 64
L N L + ++ ++ L L+HN + +LPP + +L L ++L +N+L
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
Query: 65 ETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKL 124
+ + +L L++S N+ +F +L +L + +N + +
Sbjct: 517 TVLSHNDLPANLEILDISRNQLLAPNPDVFV--SLSVLDITHNKFICECELSTFINWLNH 574
Query: 125 TVLDLSNN 132
T + ++
Sbjct: 575 TNVTIAGP 582
Score = 62.9 bits (153), Expect = 3e-12
Identities = 29/134 (21%), Positives = 44/134 (32%), Gaps = 11/134 (8%)
Query: 32 RELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID--FNFGHLRELNLSSNKFQ-Q 88
R + +P L L L N + T+ L+ L L S
Sbjct: 7 RIAFYRFCNLTQVPQVLNTTERL---LLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63
Query: 89 IPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE---LGLA 144
I K F L NL IL L ++ I + P+ + L L L + +
Sbjct: 64 IDKEAFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122
Query: 145 QQLHHLNLVGNCFK 158
+ L L+L N +
Sbjct: 123 KALTRLDLSKNQIR 136
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 83.1 bits (205), Expect = 3e-19
Identities = 34/173 (19%), Positives = 64/173 (36%), Gaps = 17/173 (9%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
D NRL + S++ LD+ +N + LP L ++ N +NN+L +
Sbjct: 106 DACDNRLSTLPE---LPASLKHLDVDNNQLTMLPELPALLEYI---NADNNQLTMLPE-- 157
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT----VL 127
L L++ +N+ +P+ ++LE L ++ N +E + P V+
Sbjct: 158 LPTSLEVLSVRNNQLTFLPEL---PESLEALDVSTNLLESL--PAVPVRNHHSEETEIFF 212
Query: 128 DLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKL 180
N I IP + + L N ++ L + T +
Sbjct: 213 RCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIY 265
Score = 81.6 bits (201), Expect = 1e-18
Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 18/144 (12%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
L+ L + L I L+++ N + +LP +L +L + +N+L T+
Sbjct: 65 QLNRLNLSSLPDNLP--PQITVLEITQNALISLPELPASLEYL---DACDNRLSTLPEL- 118
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
L+ L++ +N+ +P+ LE + +NN + + PE L VL + N
Sbjct: 119 -PASLKHLDVDNNQLTMLPELP---ALLEYINADNNQLTML--PELP---TSLEVLSVRN 169
Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
N + +P L L++ N
Sbjct: 170 NQLTFLPELPE---SLEALDVSTN 190
Score = 64.2 bits (156), Expect = 1e-12
Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 14/131 (10%)
Query: 33 ELDLSHNLIQNLPPDLL----NLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQ 88
+ +N I D N+ ++ + EL L+
Sbjct: 14 SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS 73
Query: 89 IPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLH 148
+P + + +L + N + + PE L LD +N + +P L
Sbjct: 74 LPDNLP--PQITVLEITQNALISL--PELP---ASLEYLDACDNRLSTLPELPA---SLK 123
Query: 149 HLNLVGNCFKY 159
HL++ N
Sbjct: 124 HLDVDNNQLTM 134
Score = 63.5 bits (154), Expect = 2e-12
Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 15/145 (10%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETI-DID 70
+ N+L ++ TS+ L + +N + LP +L L ++ N LE++ +
Sbjct: 146 NADNNQLTMLPEL---PTSLEVLSVRNNQLTFLPELPESLEAL---DVSTNLLESLPAVP 199
Query: 71 FNFGHLRE----LNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
H E N+ IP+ I LD +IL +N + + + + T
Sbjct: 200 VRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRES----LSQQTA 255
Query: 127 LDLSNNNIRKIPYELGLAQQLHHLN 151
+ G LH
Sbjct: 256 QPDYHGPRIYFSMSDGQQNTLHRPL 280
Score = 37.6 bits (87), Expect = 0.001
Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 9/94 (9%)
Query: 66 TIDIDFNFGHLRELNLSSNKFQQIPKCIF----HLDNLEILILNNNDIEEINQPEKLVKM 121
+I + N N N F + + N N+ + + +
Sbjct: 2 SIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLI--- 58
Query: 122 QKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
+ + L L+ N+ +P L Q+ L + N
Sbjct: 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQN 90
Score = 30.7 bits (69), Expect = 0.26
Identities = 8/74 (10%), Positives = 20/74 (27%), Gaps = 1/74 (1%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETIDID 70
NR+ + + + + L N + + + L+ + D
Sbjct: 213 RCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQ 272
Query: 71 FNFGHLRELNLSSN 84
N H + +
Sbjct: 273 QNTLHRPLADAVTA 286
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 80.9 bits (200), Expect = 6e-19
Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 7/147 (4%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
+ L + L L LS NL+ L L +NL+ +L + +D
Sbjct: 16 NCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD 73
Query: 71 FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLS 130
L L+LS N+ Q +P L L +L ++ N + + L + +L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL-PLGALRGLGELQELYLK 132
Query: 131 NNNIRKIPYEL--GLAQQLHHLNLVGN 155
N ++ +P L +L L+L N
Sbjct: 133 GNELKTLPPGLLTPTP-KLEKLSLANN 158
Score = 78.2 bits (193), Expect = 6e-18
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 7/154 (4%)
Query: 6 AQVEQADLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKL 64
++ Q +L L + + + + LDLSHN +Q+LP L L +++ N+L
Sbjct: 55 TRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 65 ETIDID-F-NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKM 121
++ + G L+EL L N+ + +P + LE L L NN++ E+ L +
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGL 171
Query: 122 QKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
+ L L L N++ IP + L L GN
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
Score = 77.8 bits (192), Expect = 7e-18
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 8/149 (5%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID 70
LS N L+ + T + +L+L + L D L L ++L +N+L+++ +
Sbjct: 37 HLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG-TLPVLGTLDLSHNQLQSLPLL 95
Query: 71 F-NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
L L++S N+ +P L L+ L L N+++ + P L KL L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLS 154
Query: 129 LSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
L+NNN+ ++P L GL + L L L N
Sbjct: 155 LANNNLTELPAGLLNGL-ENLDTLLLQEN 182
Score = 44.7 bits (106), Expect = 4e-06
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Query: 76 LRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR 135
E+N +P + + IL L+ N + L+ +LT L+L +
Sbjct: 12 HLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELT 68
Query: 136 KIPYELGLAQQLHHLNLVGN 155
K+ + L L L+L N
Sbjct: 69 KLQVDGTLP-VLGTLDLSHN 87
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 81.7 bits (201), Expect = 1e-18
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 7/150 (4%)
Query: 6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLE 65
A+ + +L + ++ SI ++ +++ I+++ + L ++ + L NKL
Sbjct: 21 AETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLT 78
Query: 66 TIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
I N +L L L NK + + + L L+ L L +N I +I LV + +L
Sbjct: 79 DIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDI---NGLVHLPQLE 134
Query: 126 VLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
L L NN I I L +L L+L N
Sbjct: 135 SLYLGNNKITDIT-VLSRLTKLDTLSLEDN 163
Score = 70.9 bits (173), Expect = 7e-15
Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
Query: 31 IRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIP 90
+ E I+ + PD + NL+ + + ++ +++ + +
Sbjct: 1 MGETITVSTPIKQIFPDD-AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV- 58
Query: 91 KCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHL 150
+ I +L N+ L LN N + +I + L ++ L L L N I+ + L ++L L
Sbjct: 59 QGIQYLPNVTKLFLNGNKLTDI---KPLTNLKNLGWLFLDENKIKDLSSLKDL-KKLKSL 114
Query: 151 NLVGN 155
+L N
Sbjct: 115 SLEHN 119
Score = 65.1 bits (158), Expect = 6e-13
Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 4/128 (3%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
L +N + +N L + + L L +N I ++ L L L ++LE+N++ I
Sbjct: 115 SLEHNGISDING-LVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVPLA 172
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
L+ L LS N + + + L NL++L L + + + + ++
Sbjct: 173 GLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLN-KPINHQSNLVVPNTVKNTD 230
Query: 132 NNIRKIPY 139
++
Sbjct: 231 GSLVTPEI 238
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 81.3 bits (201), Expect = 1e-18
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 11/153 (7%)
Query: 12 DLSYNRLHVVNSKLFD---ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETI 67
+ ++ F + ++ DLS + I L + + L + L N++ I
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314
Query: 68 DID--FNFGHLRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKL 124
D + + HL +LNLS N I +F LD LE+L L+ N I + + + + L
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRAL-GDQSFLGLPNL 373
Query: 125 TVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
L L N ++ +P + L L + L N
Sbjct: 374 KELALDTNQLKSVPDGIFDRL-TSLQKIWLHTN 405
Score = 78.2 bits (193), Expect = 2e-17
Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 8/157 (5%)
Query: 29 TSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDIDFNFGH---LRELNLSSN 84
+ +DLS N I L L+ L ++ +E + + F L L L N
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 85 KFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKL-VKMQKLTVLDLSNNNIRKIPYELG 142
+F Q+ F L NLE+L L +++ + L +L L +NNI+KI
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 143 LA--QQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLR 177
++ H L+L N K ++ L + LR
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186
Score = 77.1 bits (190), Expect = 4e-17
Identities = 36/180 (20%), Positives = 72/180 (40%), Gaps = 14/180 (7%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLI-QNLPPDLL-NLRHLVYMNLENNKLETID 68
DLS N + +N F + ++ L + + + L L+ + L+ N+ ++
Sbjct: 36 DLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE 95
Query: 69 IDF--NFGHLRELNLSSNKFQ--QIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQK 123
+L L L+ + F L +LE+L+L +N+I++I + M++
Sbjct: 96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155
Query: 124 LTVLDLSNNNIRKIPYEL---GLAQQLHHLNLVGNCFKYPRQ---DILQKGTPFLLSYLR 177
VLDL+ N ++ I E + L L + + + G PF + +
Sbjct: 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSIT 215
Score = 75.2 bits (185), Expect = 2e-16
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
DLS +++ + +F T + +L L+ N I + + L HL+ +NL N L +ID
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID- 339
Query: 70 DFNF---GHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
F L L+LS N + + F L NL+ L L+ N ++ + ++ L
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV-PDGIFDRLTSLQ 398
Query: 126 VLDLSNNN 133
+ L N
Sbjct: 399 KIWLHTNP 406
Score = 65.5 bits (160), Expect = 4e-13
Identities = 45/166 (27%), Positives = 67/166 (40%), Gaps = 24/166 (14%)
Query: 12 DLSYNRLHVVNSKLFD----ITSIRELDLSHNLIQNLPPDLLNLRHL---VYMNLENNKL 64
DLS N +K F T I+ L LS++ N + + LE + +
Sbjct: 218 DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277
Query: 65 ETIDIDFN------------FGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEE 111
+T D+ + F L +L L+ N+ +I F L +L L L+ N +
Sbjct: 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337
Query: 112 INQPEKLVKMQKLTVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
I + KL VLDLS N+IR + + GL L L L N
Sbjct: 338 I-DSRMFENLDKLEVLDLSYNHIRALGDQSFLGL-PNLKELALDTN 381
Score = 55.9 bits (135), Expect = 9e-10
Identities = 30/176 (17%), Positives = 58/176 (32%), Gaps = 33/176 (18%)
Query: 12 DLSYNRLHVVNSK-LFD-ITSIRELDLSHNLIQNLPPDL---LNLRHLVYMNLENNKLET 66
L N + + F + LDL+ N ++++ + +H + L + L+
Sbjct: 135 VLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD 194
Query: 67 IDID----------FNFGHLRELNLSSNKFQQIPKCIFH----LDNLEILILNNNDIEEI 112
++ F + L+LS N F++ F ++ LIL+N+
Sbjct: 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254
Query: 113 NQPEKLVK-----------MQKLTVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
+ K + DLS + I + + L L L N
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQN 309
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 80.3 bits (199), Expect = 1e-18
Identities = 29/144 (20%), Positives = 60/144 (41%), Gaps = 6/144 (4%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
+L+ N++ ++ L ++ + L + N I ++ L NL +L + L + + I
Sbjct: 72 NLNGNQITDISP-LSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDNISDISPLA 129
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
N + LNL +N + ++ L L + + ++++ + + L L L+
Sbjct: 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV---TPIANLTDLYSLSLNY 186
Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
N I I L LH+ N
Sbjct: 187 NQIEDIS-PLASLTSLHYFTAYVN 209
Score = 79.9 bits (198), Expect = 3e-18
Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 6/150 (4%)
Query: 6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLE 65
A+ +A L + V + ++ SI +L ++ + ++ + L +L Y+NL N++
Sbjct: 22 AEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQIT 79
Query: 66 TIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
I N L L + +NK I + +L NL L LN ++I +I L + K+
Sbjct: 80 DISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDI---SPLANLTKMY 135
Query: 126 VLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
L+L N+ L L++L + +
Sbjct: 136 SLNLGANHNLSDLSPLSNMTGLNYLTVTES 165
Score = 75.3 bits (186), Expect = 9e-17
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 5/144 (3%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
N++ + + ++T + L + +N I +L P L NL L ++ + N++ I+
Sbjct: 205 TAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVK 262
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
+ L+ LN+ SN+ I + +L L L LNNN + + E + + LT L LS
Sbjct: 263 DLTKLKMLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNED-MEVIGGLTNLTTLFLSQ 320
Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
N+I I L ++ +
Sbjct: 321 NHITDIR-PLASLSKMDSADFANQ 343
Score = 73.7 bits (182), Expect = 4e-16
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 7/145 (4%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
L+YN++ ++ L +TS+ N I ++ P + N+ L + + NNK+ +
Sbjct: 183 SLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSPLA 240
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
N L L + +N+ I + L L++L + +N I +I L + +L L L+N
Sbjct: 241 NLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNN 296
Query: 132 NNIRKI-PYELGLAQQLHHLNLVGN 155
N + +G L L L N
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQN 321
Score = 71.0 bits (175), Expect = 3e-15
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
+ N++ ++ L +++ + L++ N I ++ + +L L +N+ +N++ I +
Sbjct: 227 KIGNNKITDLSP-LANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQISDISVLN 284
Query: 72 NFGHLRELNLSSNKFQQI-PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLS 130
N L L L++N+ + I L NL L L+ N I +I L + K+ D +
Sbjct: 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI---RPLASLSKMDSADFA 341
Query: 131 NNNIRK 136
N I+K
Sbjct: 342 NQVIKK 347
Score = 68.3 bits (168), Expect = 3e-14
Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 7/144 (4%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
++ + D+ L + ++ L + + + K+ +I
Sbjct: 6 ATLPAPINQI-FPDADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASIQGIE 63
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
+L LNL+ N+ I + +L L L + N I +I L + L L L+
Sbjct: 64 YLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDI---SALQNLTNLRELYLNE 119
Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
+NI I L +++ LNL N
Sbjct: 120 DNISDIS-PLANLTKMYSLNLGAN 142
Score = 65.6 bits (161), Expect = 3e-13
Identities = 31/123 (25%), Positives = 46/123 (37%), Gaps = 6/123 (4%)
Query: 33 ELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKC 92
L I + P +L + L+ + + + +L ++ K I
Sbjct: 4 TLATLPAPINQIFP-DADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG- 61
Query: 93 IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNL 152
I +L NLE L LN N I +I L + KLT L + N I I L L L L
Sbjct: 62 IEYLTNLEYLNLNGNQITDI---SPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117
Query: 153 VGN 155
+
Sbjct: 118 NED 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 77.8 bits (192), Expect = 3e-18
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Query: 29 TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID-FN-FGHLRELNLSSNK 85
+I E+ L N I+ +PP + L ++L NN++ + D F L L L NK
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 86 FQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGL 143
++PK +F L +L++L+LN N I + + + + L +L L +N ++ I
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINCL-RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150
Query: 144 AQQLHHLNLVGN 155
+ + ++L N
Sbjct: 151 LRAIQTMHLAQN 162
Score = 73.5 bits (181), Expect = 1e-16
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 6/132 (4%)
Query: 6 AQVEQADLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNK 63
+ + L N + V+ F +R +DLS+N I L PD LR L + L NK
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 64 LETIDID-F-NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVK 120
+ + F L+ L L++NK + F L NL +L L +N ++ I
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI-AKGTFSP 150
Query: 121 MQKLTVLDLSNN 132
++ + + L+ N
Sbjct: 151 LRAIQTMHLAQN 162
Score = 58.1 bits (141), Expect = 6e-11
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 13/119 (10%)
Query: 42 QNLPPDLLNLRHLVYMNLENNKLETI-DIDF-NFGHLRELNLSSNKFQQIPKCIF-HLDN 98
NLP + +R LE N ++ I F + LR ++LS+N+ ++ F L +
Sbjct: 28 TNLPETITEIR------LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS 81
Query: 99 LEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
L L+L N I E+ + L +L L+ N I + + L L+ L+L N
Sbjct: 82 LNSLVLYGNKITEL-PKSLFEGLFSLQLLLLNANKINCLRVDAFQDL-HNLNLLSLYDN 138
Score = 38.9 bits (91), Expect = 4e-04
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 82 SSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYEL 141
+IP + + + + L N I+ I P +KL +DLSNN I ++ +
Sbjct: 19 RGKGLTEIPTNLP--ETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAPDA 75
Query: 142 --GLAQQLHHLNLVGN 155
GL + L+ L L GN
Sbjct: 76 FQGL-RSLNSLVLYGN 90
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 79.8 bits (196), Expect = 4e-18
Identities = 32/143 (22%), Positives = 63/143 (44%), Gaps = 4/143 (2%)
Query: 10 QADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDI 69
DL L + + +R L L+H + L L L + +++L +N+L +
Sbjct: 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP 480
Query: 70 DF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
L L S N + + + +L L+ L+L NN +++ + LV +L +L+
Sbjct: 481 ALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539
Query: 129 LSNNNIRKIP-YELGLAQQLHHL 150
L N++ + + LA+ L +
Sbjct: 540 LQGNSLCQEEGIQERLAEMLPSV 562
Score = 73.3 bits (179), Expect = 1e-15
Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Query: 35 DLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIF 94
DL + + + ++L + L + + L+LS N+ + +P +
Sbjct: 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALA 483
Query: 95 HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIP--YELGLAQQLHHLNL 152
L LE+L ++N +E + + + + +L L L NN +++ L +L LNL
Sbjct: 484 ALRCLEVLQASDNALENV---DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540
Query: 153 VGN 155
GN
Sbjct: 541 QGN 543
Score = 56.3 bits (135), Expect = 7e-10
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLE 65
V DLS+NRL + L + + L S N ++N+ + NL L + L NN+L+
Sbjct: 463 LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQ 521
Query: 66 TIDIDFNFGH---LRELNLSSNKFQQIP----KCIFHLDNLEILI 103
L LNL N Q + L ++ ++
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 76.7 bits (189), Expect = 3e-17
Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 10/154 (6%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
S L+ + S L +++ LDLS+N I + L +L + L +N + TI+ D
Sbjct: 37 KGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94
Query: 71 --FNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
+ G L L+LS N + F L +L L L N + + + + KL +L
Sbjct: 95 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154
Query: 128 DLSNNN-IRKIPYEL--GLAQQLHHLNLVGNCFK 158
+ N + KI + GL L L + + +
Sbjct: 155 RVGNMDTFTKIQRKDFAGLT-FLEELEIDASDLQ 187
Score = 71.7 bits (176), Expect = 2e-15
Identities = 30/182 (16%), Positives = 65/182 (35%), Gaps = 38/182 (20%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPP------------------------ 46
DLSYN L ++S F ++S+ L+L N + L
Sbjct: 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165
Query: 47 ---DLLNLRHLVYMNLENNKLETIDID--FNFGHLRELNLSSNKFQQIPKCIF-HLDNLE 100
D L L + ++ + L++ + + ++ L L + + + ++E
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVE 225
Query: 101 ILILNNNDIEEINQPE-------KLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLV 153
L L + D++ + E L+K + +++ ++ ++ L L L
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS 285
Query: 154 GN 155
N
Sbjct: 286 RN 287
Score = 65.9 bits (161), Expect = 3e-13
Identities = 19/136 (13%), Positives = 43/136 (31%), Gaps = 13/136 (9%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETI-- 67
++ + L K I ++ L L L + + + L + L+T
Sbjct: 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF 239
Query: 68 ----DIDFN----FGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLV 119
+ N R + ++ Q+ K + + L L + N ++ +
Sbjct: 240 SELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV-PDGIFD 298
Query: 120 KMQKLTVLDLSNNNIR 135
++ L + L N
Sbjct: 299 RLTSLQKIWLHTNPWD 314
Score = 62.4 bits (152), Expect = 4e-12
Identities = 24/158 (15%), Positives = 65/158 (41%), Gaps = 18/158 (11%)
Query: 13 LSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETI-DI 69
+ + + K F +T + EL++ + +Q+ P L +++++ ++ L + + +I
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI 216
Query: 70 DFN------FGHLRELNLSSNKFQQIPKCIF----HLDNLEILILNNNDIEEINQPEKLV 119
+ LR+ +L + F ++ + + + + ++ + L
Sbjct: 217 FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV--MKLLN 274
Query: 120 KMQKLTVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
++ L L+ S N ++ +P + L L + L N
Sbjct: 275 QISGLLELEFSRNQLKSVPDGIFDRL-TSLQKIWLHTN 311
Score = 42.4 bits (100), Expect = 2e-05
Identities = 13/92 (14%), Positives = 34/92 (36%), Gaps = 11/92 (11%)
Query: 7 QVEQADLSYNRLHVVN---------SKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYM 57
VE +L L + + L + R + ++ + + L + L+ +
Sbjct: 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL 282
Query: 58 NLENNKLETIDIDF--NFGHLRELNLSSNKFQ 87
N+L+++ L+++ L +N +
Sbjct: 283 EFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 76.2 bits (188), Expect = 7e-17
Identities = 30/141 (21%), Positives = 65/141 (46%), Gaps = 10/141 (7%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
+S N+L + L + + ++ +D+ +N ++ LP +L + NN+LE +
Sbjct: 137 GVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFI---AAGNNQLEELPELQ 192
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
N L + +N +++P +LE ++ NN +EE+ + L + LT + N
Sbjct: 193 NLPFLTAIYADNNSLKKLPDLPL---SLESIVAGNNILEELPE---LQNLPFLTTIYADN 246
Query: 132 NNIRKIPYELGLAQQLHHLNL 152
N ++ +P + L+ +
Sbjct: 247 NLLKTLPDLPPSLEALNVRDN 267
Score = 70.0 bits (172), Expect = 1e-14
Identities = 29/144 (20%), Positives = 61/144 (42%), Gaps = 15/144 (10%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
+L+ L + + L S N + LP +L+ L+ N L +
Sbjct: 77 ELNNLGLSSLPE---LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL---- 129
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
L L +S+N+ +++P+ + + L+I+ ++NN ++++ P+ L + N
Sbjct: 130 -PPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKL--PDLP---PSLEFIAAGN 182
Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
N + ++P EL L + N
Sbjct: 183 NQLEELP-ELQNLPFLTAIYADNN 205
Score = 67.3 bits (165), Expect = 1e-13
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 16/140 (11%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
++ N L + S+ LD+S N+ L NL +L N +N++ ++
Sbjct: 263 NVRDNYLTDLPE---LPQSLTFLDVSENIFSGLSELPPNLYYL---NASSNEIRSLC--D 314
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
L ELN+S+NK ++P LE LI + N + E+ PE Q L L +
Sbjct: 315 LPPSLEELNVSNNKLIELPALP---PRLERLIASFNHLAEV--PELP---QNLKQLHVEY 366
Query: 132 NNIRKIPYELGLAQQLHHLN 151
N +R+ P + L +
Sbjct: 367 NPLREFPDIPESVEDLRMNS 386
Score = 66.2 bits (162), Expect = 2e-13
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 15/144 (10%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
N+L + L ++ + + +N ++ LP L+L + NN LE +
Sbjct: 179 AAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDLPLSLESI---VAGNNILEELPELQ 234
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
N L + +N + +P +LE L + +N + ++ PE Q LT LD+S
Sbjct: 235 NLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTDL--PELP---QSLTFLDVSE 286
Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
N + L++LN N
Sbjct: 287 NIFSGLSELPP---NLYYLNASSN 307
Score = 65.4 bits (160), Expect = 4e-13
Identities = 29/164 (17%), Positives = 62/164 (37%), Gaps = 21/164 (12%)
Query: 7 QVEQADLSYNRLHVVNSKLFDITSIRELDLSHN-LIQNLPPDLLNLRHLVYMNLENN--- 62
+++ + L + + ++ S E + + +N PP R + L +
Sbjct: 12 FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR 71
Query: 63 KLETIDIDFN--------FGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQ 114
+ ++++ HL L S N ++P+ L +L + N + ++
Sbjct: 72 QAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL-- 129
Query: 115 PEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFK 158
L L +SNN + K+P EL + L +++ N K
Sbjct: 130 ------PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLK 166
Score = 65.4 bits (160), Expect = 5e-13
Identities = 30/171 (17%), Positives = 58/171 (33%), Gaps = 20/171 (11%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
+ S N + + S+ EL++S+N + LP L L N L +
Sbjct: 303 NASSNEIRSLCDLP---PSLEELNVSNNKLIELPALPPRLERL---IASFNHLAEVPE-- 354
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
+L++L++ N ++ P ++E L +N++ E P Q L L +
Sbjct: 355 LPQNLKQLHVEYNPLREFPDIPE---SVEDLRMNSHLAEVPELP------QNLKQLHVET 405
Query: 132 NNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKLPS 182
N +R+ P + L + P + +
Sbjct: 406 NPLREFPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
Score = 50.8 bits (122), Expect = 4e-08
Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 13/129 (10%)
Query: 29 TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQ 88
T ++E + + +P + N++ ++ E +
Sbjct: 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERN------APPGNGEQREMAVSR 64
Query: 89 IPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLH 148
+ C+ L LNN + + PE L L S N++ ++P + L
Sbjct: 65 LRDCL--DRQAHELELNNLGLSSL--PELP---PHLESLVASCNSLTELPELPQSLKSLL 117
Query: 149 HLNLVGNCF 157
N
Sbjct: 118 VDNNNLKAL 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 73.9 bits (182), Expect = 8e-17
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 29 TSIRELDLSHNLIQNLPPDLL--NLRHLVYMNLENNKLETIDID-FN-FGHLRELNLSSN 84
EL L++N L + L L +N NNK+ I+ F + E+ L+SN
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91
Query: 85 KFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYEL-- 141
+ + + +F L++L+ L+L +N I + + + + + +L L +N I +
Sbjct: 92 RLENVQHKMFKGLESLKTLMLRSNRITCV-GNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150
Query: 142 GLAQQLHHLNLVGN 155
L L LNL+ N
Sbjct: 151 TL-HSLSTLNLLAN 163
Score = 63.9 bits (156), Expect = 4e-13
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
+ S N++ + F+ + + E+ L+ N ++N+ + L L + L +N++ +
Sbjct: 63 NFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN 122
Query: 70 D-F-NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNN 107
D F +R L+L N+ + F L +L L L N
Sbjct: 123 DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 57.4 bits (139), Expect = 1e-10
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 14/119 (11%)
Query: 43 NLPPDLLNLRHLVYMNLENNKLETIDIDFNFGH---LRELNLSSNKFQQIPKCIF-HLDN 98
++P LR L NN+ ++ F LR++N S+NK I + F
Sbjct: 29 HIPQYTAELR------LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82
Query: 99 LEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
+ ++L +N +E + Q + ++ L L L +N I + + GL + L+L N
Sbjct: 83 VNEILLTSNRLENV-QHKMFKGLESLKTLMLRSNRITCVGNDSFIGL-SSVRLLSLYDN 139
Score = 39.6 bits (93), Expect = 2e-04
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 82 SSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYEL 141
S+ K +IP+ I L LNNN+ + K+ +L ++ SNN I I
Sbjct: 19 SNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA 76
Query: 142 --GLAQQLHHLNLVGN 155
G + ++ + L N
Sbjct: 77 FEGAS-GVNEILLTSN 91
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 75.8 bits (187), Expect = 9e-17
Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 7/144 (4%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
D+S N++ ++ L +T++ L ++N I ++ P L L +L ++L N+L+ I
Sbjct: 183 DISSNKVSDISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLA 240
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
+ +L +L+L++N+ + + L L L L N I I L + LT L+L+
Sbjct: 241 SLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNI---SPLAGLTALTNLELNE 296
Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
N + I + + L +L L N
Sbjct: 297 NQLEDIS-PISNLKNLTYLTLYFN 319
Score = 74.6 bits (184), Expect = 2e-16
Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 8/144 (5%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
+ S N+L + + L ++T + ++ +++N I ++ P L NL +L + L NN++ ID
Sbjct: 74 NFSNNQLTDI-TPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLK 131
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
N +L L LSSN I + L +L+ L N + + L + L LD+S+
Sbjct: 132 NLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ----VTDLKPLANLTTLERLDISS 186
Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
N + I L L L N
Sbjct: 187 NKVSDIS-VLAKLTNLESLIATNN 209
Score = 72.7 bits (179), Expect = 1e-15
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 7/147 (4%)
Query: 6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLE 65
A+ + L + S D+ + L I+++ + L +L +N NN+L
Sbjct: 24 AEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLT 81
Query: 66 TIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
I N L ++ +++N+ I + +L NL L L NN I +I + L + L
Sbjct: 82 DITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDI---DPLKNLTNLN 137
Query: 126 VLDLSNNNIRKIPYELGLAQQLHHLNL 152
L+LS+N I I L L L+
Sbjct: 138 RLELSSNTISDIS-ALSGLTSLQQLSF 163
Score = 72.3 bits (178), Expect = 1e-15
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 7/144 (4%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
DL+ N++ + + L +T + EL L N I N+ P L L L + L N+LE I
Sbjct: 249 DLANNQISNL-APLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPIS 306
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
N +L L L N I + L L+ L NN + +++ L + + L +
Sbjct: 307 NLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVSS---LANLTNINWLSAGH 362
Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
N I + L ++ L L
Sbjct: 363 NQISDLT-PLANLTRITQLGLNDQ 385
Score = 71.5 bits (176), Expect = 3e-15
Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 8/144 (5%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
+LS N + +++ L +TS+++L + + P L NL L +++ +NK+ I +
Sbjct: 140 ELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDISVLA 196
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
+L L ++N+ I + L NL+ L LN N +++I L + LT LDL+N
Sbjct: 197 KLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLAN 252
Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
N I + L +L L L N
Sbjct: 253 NQISNLA-PLSGLTKLTELKLGAN 275
Score = 70.4 bits (173), Expect = 9e-15
Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
L N++ + S L +T++ L+L+ N ++++ P + NL++L Y+ L N + I
Sbjct: 271 KLGANQISNI-SPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVS 328
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
+ L+ L +NK + + +L N+ L +N I ++ L + ++T L L++
Sbjct: 329 SLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDL---TPLANLTRITQLGLND 384
Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
P + N V N
Sbjct: 385 QAWTNAPVNYK--ANVSIPNTVKN 406
Score = 63.4 bits (155), Expect = 2e-12
Identities = 23/144 (15%), Positives = 54/144 (37%), Gaps = 5/144 (3%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
+L+ N+L ++ + ++ ++ L L N I ++ P + +L L + NNK+ +
Sbjct: 293 ELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVSSLA 350
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
N ++ L+ N+ + + +L + L LN+ P + +
Sbjct: 351 NLTNINWLSAGHNQISDLT-PLANLTRITQLGLNDQAWTNA--PVNYKANVSIPNTVKNV 407
Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
P + ++ N
Sbjct: 408 TGALIAPATISDGGSYTEPDITWN 431
Score = 63.1 bits (154), Expect = 2e-12
Identities = 18/127 (14%), Positives = 50/127 (39%), Gaps = 4/127 (3%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
L +N + ++ + +T ++ L +N + ++ L NL ++ +++ +N++ +
Sbjct: 315 TLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTPLA 372
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
N + +L L+ + P ++ + N + P + T D++
Sbjct: 373 NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT--GALIAPATISDGGSYTEPDITW 430
Query: 132 NNIRKIP 138
N
Sbjct: 431 NLPSYTN 437
Score = 60.7 bits (148), Expect = 2e-11
Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 6/123 (4%)
Query: 33 ELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKC 92
I + D L + L + + + L + I
Sbjct: 6 ATITQDTPINQIFTDT-ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG- 63
Query: 93 IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNL 152
+ +L+NL + +NN + +I L + KL + ++NN I I L L L L
Sbjct: 64 VEYLNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTL 119
Query: 153 VGN 155
N
Sbjct: 120 FNN 122
Score = 38.8 bits (91), Expect = 5e-04
Identities = 13/97 (13%), Positives = 31/97 (31%), Gaps = 2/97 (2%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
+N++ + L ++T I +L L+ N P + N+ + L
Sbjct: 359 SAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATI 417
Query: 71 FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNN 107
+ G E +++ N + + +
Sbjct: 418 SDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTT 454
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 75.7 bits (186), Expect = 1e-16
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 7/148 (4%)
Query: 11 ADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDI 69
D S N L V L L++S N I L D+L+L L + + +N+++ +DI
Sbjct: 5 VDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI 62
Query: 70 D-FNF-GHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
F F L L+LS NK +I NL+ L L+ N + + ++ M +L L
Sbjct: 63 SVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120
Query: 128 DLSNNNIRKIPYELGLAQQLHHLNLVGN 155
LS ++ K + + LV
Sbjct: 121 GLSTTHLEKSSVLPIAHLNISKVLLVLG 148
Score = 68.4 bits (167), Expect = 5e-14
Identities = 32/152 (21%), Positives = 66/152 (43%), Gaps = 11/152 (7%)
Query: 12 DLSYNRLHVVNSKLFDI-TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
+ + + +V+ + LD S+NL+ + + +L L + L+ N+L+ +
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365
Query: 70 DFNFGH----LRELNLSSNKFQQIPKCIF--HLDNLEILILNNNDIEEINQPEKLVKMQK 123
L++L++S N K +L L +++N + + L +
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI-FRCL--PPR 422
Query: 124 LTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
+ VLDL +N I+ IP ++ + L LN+ N
Sbjct: 423 IKVLDLHSNKIKSIPKQVVKLEALQELNVASN 454
Score = 68.0 bits (166), Expect = 5e-14
Identities = 32/152 (21%), Positives = 65/152 (42%), Gaps = 11/152 (7%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPD---LLNLRHLVYMNLENNKLETI 67
D S N L + +T + L L N ++ L ++ L +++ N +
Sbjct: 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389
Query: 68 DIDFNFGH---LRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKL 124
+ + L LN+SSN +++L L++N I+ I P+++VK++ L
Sbjct: 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKIKSI--PKQVVKLEAL 446
Query: 125 TVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGN 155
L++++N ++ +P L + L N
Sbjct: 447 QELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 66.4 bits (162), Expect = 2e-13
Identities = 27/127 (21%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 12 DLSYNRLHVVN--SKLFD-ITSIRELDLSHNLIQNLPPDLL--NLRHLVYMNLENNKLET 66
L N+L ++ +++ + S+++LD+S N + + L+ +N+ +N L
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413
Query: 67 IDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
++ L+L SNK + IPK + L+ L+ L + +N ++ + ++ L
Sbjct: 414 TIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVP-DGIFDRLTSLQK 472
Query: 127 LDLSNNN 133
+ L N
Sbjct: 473 IWLHTNP 479
Score = 59.5 bits (144), Expect = 4e-11
Identities = 21/151 (13%), Positives = 62/151 (41%), Gaps = 8/151 (5%)
Query: 12 DLSYNRLHVVNSKLFDI-TSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETIDI 69
+ + S +++I +++ + + + + + + + ++++ NN L
Sbjct: 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF 341
Query: 70 DF--NFGHLRELNLSSNKFQQIPKCIF---HLDNLEILILNNNDIEEINQPEKLVKMQKL 124
+ + L L L N+ +++ K + +L+ L ++ N + + + L
Sbjct: 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401
Query: 125 TVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
L++S+N + + L ++ L+L N
Sbjct: 402 LSLNMSSNILTDTIFR-CLPPRIKVLDLHSN 431
Score = 58.7 bits (142), Expect = 8e-11
Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 12/164 (7%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDI 69
+S+NR+ ++ +F + LDLSHN + + +NL+HL +L N + + I
Sbjct: 51 IISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHL---DLSFNAFDALPI 107
Query: 70 DFNFGH---LRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKL--VKMQK 123
FG+ L+ L LS+ ++ HL+ ++L++ E PE L +
Sbjct: 108 CKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTES 167
Query: 124 LTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYPRQDILQ 166
L ++ +N I + L N+ L
Sbjct: 168 LHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211
Score = 52.9 bits (127), Expect = 9e-09
Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 7/135 (5%)
Query: 28 ITSIRELDLSHNLIQNLPPDL-LNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSN 84
+ ++ + ++ + ++ N + + + L+ S+N
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN 334
Query: 85 KFQQIPKCIFH-LDNLEILILNNNDIEEI-NQPEKLVKMQKLTVLDLSNNNIRKIPYELG 142
L LE LIL N ++E+ E +M+ L LD+S N++ +
Sbjct: 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394
Query: 143 LAQ--QLHHLNLVGN 155
+ L LN+ N
Sbjct: 395 CSWTKSLLSLNMSSN 409
Score = 44.5 bits (105), Expect = 7e-06
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
++S N L + I+ LDL N I+++P ++ L L +N+ +N+L+++
Sbjct: 405 NMSSNILTDTIFRCLP-PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGI 463
Query: 72 --NFGHLRELNLSSNKFQ 87
L+++ L +N +
Sbjct: 464 FDRLTSLQKIWLHTNPWD 481
Score = 36.8 bits (85), Expect = 0.002
Identities = 11/57 (19%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 7 QVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENN 62
+++ DL N++ + ++ + +++EL+++ N ++++P + L L + L N
Sbjct: 422 RIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 74.7 bits (184), Expect = 1e-16
Identities = 32/154 (20%), Positives = 60/154 (38%), Gaps = 7/154 (4%)
Query: 2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLEN 61
A + + + + + ++ L+L N I +L P L NL + + L
Sbjct: 37 QADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSG 94
Query: 62 NKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKM 121
N L+ + ++ L+L+S + + + L NL++L L+ N I I L +
Sbjct: 95 NPLKNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNI---SPLAGL 150
Query: 122 QKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
L L + N + + L +L L N
Sbjct: 151 TNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDN 183
Score = 71.3 bits (175), Expect = 2e-15
Identities = 30/150 (20%), Positives = 58/150 (38%), Gaps = 7/150 (4%)
Query: 6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLE 65
A + + + D+ I L + + + L +L+ + L++N++
Sbjct: 19 ANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQIT 76
Query: 66 TIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
+ N + EL LS N + + I L +++ L L + I ++ L + L
Sbjct: 77 DLAPLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDV---TPLAGLSNLQ 132
Query: 126 VLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
VL L N I I L L +L++
Sbjct: 133 VLYLDLNQITNIS-PLAGLTNLQYLSIGNA 161
Score = 56.6 bits (137), Expect = 4e-10
Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 6/120 (5%)
Query: 36 LSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFH 95
I + PD L + + + + + + + L+ I + +
Sbjct: 4 TQPTAINVIFPDP-ALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-VQY 61
Query: 96 LDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
L+NL L L +N I ++ L + K+T L+LS N ++ + + Q + L+L
Sbjct: 62 LNNLIGLELKDNQITDL---APLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST 117
Score = 48.1 bits (115), Expect = 3e-07
Identities = 22/127 (17%), Positives = 54/127 (42%), Gaps = 4/127 (3%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
+ ++ + + L +++ + L N I ++ P L +L +L+ ++L+NN++ +
Sbjct: 157 SIGNAQVSDL-TPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSPLA 214
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
N +L + L++ P +F+ +NL + + P + +L+
Sbjct: 215 NTSNLFIVTLTNQTITNQP--VFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTW 272
Query: 132 NNIRKIP 138
N I
Sbjct: 273 NLTSFIN 279
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 73.1 bits (180), Expect = 3e-16
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 17/155 (10%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETI-- 67
DL N+L + SK F +T +R L L+ N +Q LP + L++L + + +NKL+ +
Sbjct: 43 DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI 102
Query: 68 DIDFNFGHLRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPE----KLVKMQ 122
+ +L EL L N+ + +P +F L L L L N+++ + P+ KL
Sbjct: 103 GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL--PKGVFDKLT--- 157
Query: 123 KLTVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
L L L NN ++++P L +L L L N
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKL-TELKTLKLDNN 191
Score = 73.1 bits (180), Expect = 4e-16
Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 12/151 (7%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
D S +L + S + ++LDL N + +LP L L + L +NKL+T+
Sbjct: 22 DCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79
Query: 71 -FN-FGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKL-VKMQKLTV 126
F +L L ++ NK Q +P +F L NL L L+ N ++ + P ++ + KLT
Sbjct: 80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSL--PPRVFDSLTKLTY 137
Query: 127 LDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
L L N ++ +P + L L L L N
Sbjct: 138 LSLGYNELQSLPKGVFDKLT-SLKELRLYNN 167
Score = 72.7 bits (179), Expect = 5e-16
Identities = 40/155 (25%), Positives = 79/155 (50%), Gaps = 7/155 (4%)
Query: 7 QVEQADLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKL 64
++ L+ N+L + + +F + ++ L ++ N +Q LP + L +L + L+ N+L
Sbjct: 62 KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121
Query: 65 ETIDID-F-NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKM 121
+++ F + L L+L N+ Q +PK +F L +L+ L L NN ++ + K+
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV-PEGAFDKL 180
Query: 122 QKLTVLDLSNNNIRKIPYEL-GLAQQLHHLNLVGN 155
+L L L NN ++++P ++L L L N
Sbjct: 181 TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 72.0 bits (177), Expect = 5e-16
Identities = 24/139 (17%), Positives = 54/139 (38%), Gaps = 9/139 (6%)
Query: 29 TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNL-ENNKLETIDID--FNFGHLRELNLSSN 84
S + L L ++ +P NL ++ + + + L+ ++ +N + + + +
Sbjct: 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90
Query: 85 KF-QQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNN-IRKIPYEL 141
+ I L L+ L + N ++ K+ +L++++N + IP
Sbjct: 91 RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150
Query: 142 --GLAQQLHHLNLVGNCFK 158
GL + L L N F
Sbjct: 151 FQGLCNETLTLKLYNNGFT 169
Score = 61.6 bits (150), Expect = 4e-12
Identities = 22/154 (14%), Positives = 57/154 (37%), Gaps = 13/154 (8%)
Query: 12 DLSYNR-LHVVNSKLFD-ITSIRELDLSHNLIQNLPPD--LLNLRHLVYMNL-ENNKLET 66
++ R L ++ + ++ L + + ++ P + + + + +N + +
Sbjct: 86 EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTS 145
Query: 67 IDID-FN--FGHLRELNLSSNKFQQIPKCIFHLDNLEILIL-NNNDIEEINQPEKLVKM- 121
I ++ F L L +N F + F+ L+ + L N + I + +
Sbjct: 146 IPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVI-DKDAFGGVY 204
Query: 122 QKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
++LD+S ++ +P + L L
Sbjct: 205 SGPSLLDVSQTSVTALPS--KGLEHLKELIARNT 236
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 71.6 bits (176), Expect = 1e-15
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 7/150 (4%)
Query: 6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLE 65
A+ + +L + ++ SI ++ +++ I+++ + L ++ + L NKL
Sbjct: 24 AETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLT 81
Query: 66 TIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
I N +L L L NK + + + L L+ L L +N I +I LV + +L
Sbjct: 82 DIKPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDI---NGLVHLPQLE 137
Query: 126 VLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
L L NN I I L +L L+L N
Sbjct: 138 SLYLGNNKITDIT-VLSRLTKLDTLSLEDN 166
Score = 71.6 bits (176), Expect = 2e-15
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 7/154 (4%)
Query: 2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLEN 61
+ ++Q + + + V + + ++ +L L+ N + ++ P L NL++L ++ L+
Sbjct: 42 QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE 99
Query: 62 NKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKM 121
NK++ + + L+ L+L N I + HL LE L L NN I +I L ++
Sbjct: 100 NKVKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDI---TVLSRL 155
Query: 122 QKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
KL L L +N I I L +L +L L N
Sbjct: 156 TKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKN 188
Score = 66.6 bits (163), Expect = 9e-14
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Query: 9 EQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETID 68
L N++ ++S L D+ ++ L L HN I ++ L++L L + L NNK+ I
Sbjct: 93 GWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDIT 150
Query: 69 IDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
+ L L+L N+ I + L L+ L L+ N I ++ L ++ L VL+
Sbjct: 151 VLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLE 206
Query: 129 LSNNNIRKIPYE 140
L + P
Sbjct: 207 LFSQECLNKPIN 218
Score = 66.6 bits (163), Expect = 1e-13
Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 7/144 (4%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
L+ N+L + L ++ ++ L L N +++L L +L+ L ++LE+N + I+
Sbjct: 74 FLNGNKLTDI-KPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDINGLV 131
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
+ L L L +NK I + L L+ L L +N I +I L + KL L LS
Sbjct: 132 HLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI---VPLAGLTKLQNLYLSK 187
Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
N+I + L + L L L
Sbjct: 188 NHISDLR-ALAGLKNLDVLELFSQ 210
Score = 56.2 bits (136), Expect = 5e-10
Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 6/123 (4%)
Query: 33 ELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKC 92
E I+ + D + NL+ + + ++ +++ + + +
Sbjct: 6 ETITVPTPIKQIFSDD-AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QG 63
Query: 93 IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNL 152
I +L N+ L LN N + +I + L ++ L L L N ++ + L ++L L+L
Sbjct: 64 IQYLPNVTKLFLNGNKLTDI---KPLANLKNLGWLFLDENKVKDLSSLKDL-KKLKSLSL 119
Query: 153 VGN 155
N
Sbjct: 120 EHN 122
Score = 47.7 bits (114), Expect = 4e-07
Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 4/123 (3%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
L N++ + + L +T + L L N I ++ P L L L + L N + +
Sbjct: 140 YLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALA 197
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
+L L L S + P I H NL + N + PE + ++
Sbjct: 198 GLKNLDVLELFSQECLNKP--INHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKW 255
Query: 132 NNI 134
+
Sbjct: 256 HLP 258
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 72.2 bits (177), Expect = 2e-15
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 7/145 (4%)
Query: 11 ADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDI 69
D S L V L + L LS N I L D+ L L + L +N++ ++D
Sbjct: 36 VDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF 93
Query: 70 D-FNF-GHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
F F L L++S N+ Q I + +L L L+ ND + + ++ + KLT L
Sbjct: 94 HVFLFNQDLEYLDVSHNRLQNIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFL 151
Query: 128 DLSNNNIRKIPYELGLAQQLHHLNL 152
LS R++ L + L
Sbjct: 152 GLSAAKFRQLDLLPVAHLHLSCILL 176
Score = 68.4 bits (167), Expect = 4e-14
Identities = 32/156 (20%), Positives = 65/156 (41%), Gaps = 15/156 (9%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPD---LLNLRHLVYMNLENNKLETI 67
+ + N + + ++ L L N ++N N+ L +++ N L +
Sbjct: 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418
Query: 68 DIDFNFG---HLRELNLSSNKFQQIPKCIFH--LDNLEILILNNNDIEEINQPEKLVKMQ 122
D + LNLSSN + +F +++L L+NN I I P+ + +Q
Sbjct: 419 AYDRTCAWAESILVLNLSSN---MLTGSVFRCLPPKVKVLDLHNNRIMSI--PKDVTHLQ 473
Query: 123 KLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCF 157
L L++++N ++ +P L ++ L N +
Sbjct: 474 ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
Score = 68.0 bits (166), Expect = 6e-14
Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 11/161 (6%)
Query: 6 AQVEQADLSYNRLHVVNSKLFDI-TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNK 63
A++ LS + ++ +S L+ + N+ + L+ L + L+ N
Sbjct: 329 AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388
Query: 64 LETIDIDFN-FGHLRELNLSSNKFQQIPKCIFH-----LDNLEILILNNNDIEEINQPEK 117
L+ ++ L + + +++ +L L++N + +
Sbjct: 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG-SVFRC 447
Query: 118 LVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFK 158
L K+ VLDL NN I IP ++ Q L LN+ N K
Sbjct: 448 LP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK 486
Score = 66.8 bits (163), Expect = 2e-13
Identities = 36/177 (20%), Positives = 70/177 (39%), Gaps = 10/177 (5%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID 70
LS+NR+ ++ +F + LD+SHN +QN+ + L +++L N + + +
Sbjct: 82 RLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVC 139
Query: 71 FNFG---HLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
FG L L LS+ KF+Q+ +L ++L+ + +++ TVL
Sbjct: 140 KEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199
Query: 128 DLSNNNIRKIPYELGLA----QQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKL 180
L + ++ ++ L N+ N R + L L
Sbjct: 200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256
Score = 47.2 bits (112), Expect = 8e-07
Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 7/135 (5%)
Query: 28 ITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETIDI--DFNFGHLRELNLSSN 84
+ S+ + + + L + + L + I + + LN + N
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363
Query: 85 KFQQIPKCIFH-LDNLEILILNNNDIEEI-NQPEKLVKMQKLTVLDLSNNNIRKIPYEL- 141
F L L+ LIL N ++ M L LD+S N++ Y+
Sbjct: 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423
Query: 142 -GLAQQLHHLNLVGN 155
A+ + LNL N
Sbjct: 424 CAWAESILVLNLSSN 438
Score = 42.9 bits (101), Expect = 2e-05
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 12 DLSYNRLHVVNSKLFD--ITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDI 69
+LS N L +F ++ LDL +N I ++P D+ +L+ L +N+ +N+L+++
Sbjct: 434 NLSSNMLT---GSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPD 490
Query: 70 DF--NFGHLRELNLSSNKFQ 87
L+ + L N +
Sbjct: 491 GVFDRLTSLQYIWLHDNPWD 510
Score = 38.3 bits (89), Expect = 8e-04
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 78 ELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI 137
++ S+ +PK + + L L+ N I E+ + + + +L VL LS+N IR +
Sbjct: 35 MVDYSNRNLTHVPKDL--PPRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSL 91
Query: 138 PYEL--GLAQQLHHLNLVGN 155
+ + Q L +L++ N
Sbjct: 92 DFHVFLFN-QDLEYLDVSHN 110
Score = 32.9 bits (75), Expect = 0.044
Identities = 14/58 (24%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENN 62
+V+ DL NR+ + + + +++EL+++ N ++++P + L L Y+ L +N
Sbjct: 450 PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 69.3 bits (170), Expect = 2e-15
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 23 SKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLS 82
++ + RELDL I + L ++ +N++ +D L+ L ++
Sbjct: 13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVN 72
Query: 83 SNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY 139
+N+ +I + + L +L LIL NN + E+ + L ++ LT L + N + +
Sbjct: 73 NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130
Score = 60.1 bits (146), Expect = 7e-12
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Query: 57 MNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPE 116
+ L +E N REL+L K I LD + + ++N+I ++ +
Sbjct: 2 VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---D 58
Query: 117 KLVKMQKLTVLDLSNNNIRKIPYELGLA-QQLHHLNLVGNC 156
+++L L ++NN I +I L A L L L N
Sbjct: 59 GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS 99
Score = 29.6 bits (67), Expect = 0.40
Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 25/112 (22%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID 70
++ NR+ + L + + EL L++N + L DL L L
Sbjct: 70 LVNNNRICRIGEGLDQALPDLTELILTNNSLVEL-GDLDPLASLK--------------- 113
Query: 71 FNFGHLRELNLSSNKFQQIP----KCIFHLDNLEILILNNNDIEEINQPEKL 118
L L + N I+ + + +L ++E + EK+
Sbjct: 114 ----SLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKM 161
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 69.7 bits (171), Expect = 2e-15
Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
Query: 2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLEN 61
+A EA+ + + +++ L + + + L LS N I+ + L + +L ++L
Sbjct: 21 VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGMENLRILSLGR 79
Query: 62 NKLETID-IDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVK 120
N ++ I+ +D L EL +S N+ + I L NL +L ++NN I + +KL
Sbjct: 80 NLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAA 138
Query: 121 MQKLTVLDLSNNNIRKIPYE 140
+ KL L L+ N + E
Sbjct: 139 LDKLEDLLLAGNPLYNDYKE 158
Score = 56.2 bits (136), Expect = 2e-10
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 78 ELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI 137
EL+ +++ + L + L L+ N+IE+I L M+ L +L L N I+KI
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI---SSLSGMENLRILSLGRNLIKKI 85
Query: 138 PYELGLAQQLHHLNLVGN 155
+A L L + N
Sbjct: 86 ENLDAVADTLEELWISYN 103
Score = 48.5 bits (116), Expect = 1e-07
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 3/118 (2%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
LS N + + S L + ++R L L NLI+ + L + + N++ ++
Sbjct: 54 ALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIE 112
Query: 72 NFGHLRELNLSSNKFQQIP--KCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
+LR L +S+NK + LD LE L+L N + + ++ V+
Sbjct: 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 70.2 bits (172), Expect = 7e-15
Identities = 33/153 (21%), Positives = 60/153 (39%), Gaps = 12/153 (7%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNK-LETIDI 69
+++ + S L + EL ++ + L + + N LE I+
Sbjct: 15 LCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA 72
Query: 70 D--FNFGHLRELNLS-SNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
D N L E+ + +N I F +L NL+ L+++N I+ + + +
Sbjct: 73 DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL-PDVHKIHSLQKV 131
Query: 126 VLDLS-NNNIRKIPYEL--GLAQQLHHLNLVGN 155
+LD+ N NI I GL+ + L L N
Sbjct: 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164
Score = 69.9 bits (171), Expect = 1e-14
Identities = 33/151 (21%), Positives = 66/151 (43%), Gaps = 12/151 (7%)
Query: 13 LSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDL-LNLRHLVYMNL-ENNKLETIDI 69
N L +N + F + +++ L +S+ I++LP ++ V +++ +N + TI+
Sbjct: 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE- 145
Query: 70 DFNFGHL----RELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKL 124
+F L L L+ N Q+I F+ E+ + +NN++EE+ +
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEEL-PNDVFHGASGP 204
Query: 125 TVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
+LD+S I +P + L L
Sbjct: 205 VILDISRTRIHSLP--SYGLENLKKLRARST 233
Score = 49.4 bits (118), Expect = 1e-07
Identities = 20/99 (20%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSH-NLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
L+ N + +++ F+ T + EL+LS N ++ LP D+ V +++ ++ ++
Sbjct: 160 WLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP- 218
Query: 70 DFNFGHLRELN-LSSNKFQQIPKCIFHLDNLEILILNNN 107
+ +L++L S+ +++P + L L L
Sbjct: 219 SYGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 69.9 bits (172), Expect = 7e-15
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 10/136 (7%)
Query: 29 TSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLENNKLE-TIDIDF-NFGHLRELNLSSNK 85
T + L ++H + +P L ++ LV ++ N L T+ + +L + N+
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
Query: 86 FQ-QIPKCIFHLDNL-EILILNNNDIE-EINQPEKLVKMQKLTVLDLSNNNIR-KIPYEL 141
IP L + ++ N + +I P + L +DLS N +
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKI--PPTFANL-NLAFVDLSRNMLEGDASVLF 217
Query: 142 GLAQQLHHLNLVGNCF 157
G + ++L N
Sbjct: 218 GSDKNTQKIHLAKNSL 233
Score = 67.9 bits (167), Expect = 4e-14
Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 20/163 (12%)
Query: 7 QVEQADLSYNRLH---VVNSKLFDITSIRELDLSH--NLIQNLPPDLLNLRHLVYMNLEN 61
+V DLS L + S L ++ + L + NL+ +PP + L L Y+ + +
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 62 NKL-----ETIDIDFNFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIE-EINQ 114
+ + + L L+ S N +P I L NL + + N I I
Sbjct: 111 TNVSGAIPDFLS---QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI-- 165
Query: 115 PEKLVKMQKL-TVLDLSNNNIR-KIPYELGLAQQLHHLNLVGN 155
P+ KL T + +S N + KIP L ++L N
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRN 207
Score = 66.0 bits (162), Expect = 2e-13
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 15/153 (9%)
Query: 12 DLSYNRLH-VVNSKLFDITS-IRELDLSHNLIQ-NLPPDLLNLRHLVYMNLENNKLETID 68
NR+ + + + +S N + +PP NL +L +++L N L D
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNML-EGD 212
Query: 69 IDFNFG---HLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIE-EINQPEKLVKMQK 123
FG + ++++L+ N + K + NL L L NN I + P+ L +++
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTL--PQGLTQLKF 269
Query: 124 LTVLDLSNNNIR-KIPYELGLAQQLHHLNLVGN 155
L L++S NN+ +IP + G Q+ N
Sbjct: 270 LHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301
Score = 56.0 bits (136), Expect = 5e-10
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 72 NFGHLRELNLSSNKFQ---QIPKCIFHLDNLEILIL-NNNDIE-EINQPEKLVKMQKLTV 126
+ L+LS IP + +L L L + N++ I P + K+ +L
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI--PPAIAKLTQLHY 105
Query: 127 LDLSNNNIR-KIPYELGLAQQLHHLNLVGNCF 157
L +++ N+ IP L + L L+ N
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137
Score = 49.8 bits (120), Expect = 7e-08
Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
Query: 12 DLSYNRLH-VVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLE-TIDI 69
DLS N L + + +++ L+ N + + ++L ++L NN++ T+
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262
Query: 70 DF-NFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNND 108
L LN+S N +IP+ +L ++ NN
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302
Score = 27.1 bits (61), Expect = 3.7
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 115 PEKLVKMQKLTVLDLSNNNIR---KIPYELGLAQQLHHLNLVGN 155
+ + ++ LDLS N+ IP L L+ L + G
Sbjct: 43 CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 69.5 bits (170), Expect = 9e-15
Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 18/162 (11%)
Query: 12 DLSYNRLHVVNSKLFDI-TSIRELDLSHNLIQNLPP-----DLLNLRHLVYMNLENNKLE 65
++ + + + ++ LDLS N L L + L N +E
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214
Query: 66 TIDIDF-----NFGHLRELNLSSNKFQQIPKCIF--HLDNLEILILNNNDIEEINQPEKL 118
T L+ L+LS N + L L L+ ++++ P+ L
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV--PKGL 272
Query: 119 VKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYP 160
KL+VLDLS N + + P L Q+ +L+L GN F
Sbjct: 273 P--AKLSVLDLSYNRLDRNPSPDEL-PQVGNLSLKGNPFLDS 311
Score = 64.9 bits (158), Expect = 5e-13
Identities = 27/165 (16%), Positives = 58/165 (35%), Gaps = 18/165 (10%)
Query: 7 QVEQADLSYNRLHVVNSKLFDI-----TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLE 60
+ +L ++ L ++ ++ L ++ N + + L ++L
Sbjct: 122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS 181
Query: 61 NNKLETID------IDFNFGHLRELNLSSNKFQQIPKCIFHL----DNLEILILNNNDIE 110
+N F L+ L L + + L L+ L L++N +
Sbjct: 182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR 241
Query: 111 EINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
+ +L L+LS ++++P GL +L L+L N
Sbjct: 242 DAAGAPSCDWPSQLNSLNLSFTGLKQVPK--GLPAKLSVLDLSYN 284
Score = 27.6 bits (61), Expect = 2.6
Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 5/114 (4%)
Query: 44 LPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKF--QQIPKCIFHLD--NL 99
L +L +L+ L L+ L + + + + + + L L
Sbjct: 38 LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97
Query: 100 EILILNNNDIEEINQPEKLV-KMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNL 152
+ L L N ++ P L L +L+L N + L QQ L
Sbjct: 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGL 151
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 68.5 bits (168), Expect = 2e-14
Identities = 30/150 (20%), Positives = 72/150 (48%), Gaps = 8/150 (5%)
Query: 6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLE 65
A + +L + + +++ ++ + ++ IQ+L + +L ++L +N++
Sbjct: 19 ANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSLAG-MQFFTNLKELHLSHNQIS 76
Query: 66 TIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
+ + L EL+++ N+ + + L L L+NN++ + + L+ ++ L
Sbjct: 77 DLSPLKDLTKLEELSVNRNRLKNLNG--IPSACLSRLFLDNNELRDT---DSLIHLKNLE 131
Query: 126 VLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
+L + NN ++ I LG +L L+L GN
Sbjct: 132 ILSIRNNKLKSIV-MLGFLSKLEVLDLHGN 160
Score = 62.7 bits (153), Expect = 2e-12
Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 11/145 (7%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDID 70
LS+N++ + S L D+T + EL ++ N ++NL L L L+NN+L D
Sbjct: 69 HLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRL---FLDNNELRDTDSL 124
Query: 71 FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLS 130
+ +L L++ +NK + I + L LE+L L+ N+I L +++K+ +DL+
Sbjct: 125 IHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLT 180
Query: 131 NNNIRKIPYELGLAQQLHHLNLVGN 155
P + +L+ N V +
Sbjct: 181 GQKCVNEP--VKYQPELYITNTVKD 203
Score = 62.0 bits (151), Expect = 3e-12
Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 7/133 (5%)
Query: 23 SKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLS 82
+ + + +L + +L L + N +N+ ++++ F +L+EL+LS
Sbjct: 13 FPDPGLANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLS 71
Query: 83 SNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELG 142
N+ + + L LE L +N N ++ +N L+ L L NN +R L
Sbjct: 72 HNQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSA----CLSRLFLDNNELRDTD-SLI 125
Query: 143 LAQQLHHLNLVGN 155
+ L L++ N
Sbjct: 126 HLKNLEILSIRNN 138
Score = 58.1 bits (141), Expect = 8e-11
Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 7/123 (5%)
Query: 33 ELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKC 92
E I + P L + V NL + + ++ N ++ Q +
Sbjct: 1 ESIQRPTPINQVFP-DPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL-AG 58
Query: 93 IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNL 152
+ NL+ L L++N I ++ L + KL L ++ N ++ + L L L
Sbjct: 59 MQFFTNLKELHLSHNQISDL---SPLKDLTKLEELSVNRNRLKNLNGIPSA--CLSRLFL 113
Query: 153 VGN 155
N
Sbjct: 114 DNN 116
Score = 46.2 bits (110), Expect = 1e-06
Identities = 17/127 (13%), Positives = 39/127 (30%), Gaps = 4/127 (3%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
L N L L + ++ L + +N ++++ L L L ++L N++
Sbjct: 112 FLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIVM-LGFLSKLEVLDLHGNEITNTGGLT 169
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
+ ++L+ K P + + L I + P + +
Sbjct: 170 RLKKVNWIDLTGQKCVNEP--VKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLW 227
Query: 132 NNIRKIP 138
Sbjct: 228 ELPVYTD 234
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 62.8 bits (153), Expect = 5e-13
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 32 RELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPK 91
LD + + +L +++L N L ++ L++L LS N+
Sbjct: 29 LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLD 88
Query: 92 CIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY 139
+ L NL L L+ N +++I+ E L K++ L LDL N + +
Sbjct: 89 MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137
Score = 52.1 bits (125), Expect = 5e-09
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 4/111 (3%)
Query: 47 DLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNN 106
+R LV N ++N + + F +L L+L + + + L L+ L L+
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSE 80
Query: 107 NDIEEINQPEKLVKMQKLTVLDLSNNNIRKIP--YELGLAQQLHHLNLVGN 155
N I K+ LT L+LS N ++ I L + L L+L
Sbjct: 81 NRIFGG-LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
Score = 37.4 bits (87), Expect = 7e-04
Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 9/109 (8%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNK---LETI 67
L L V++ L + +++L+LS N I L L +L ++NL NK + T+
Sbjct: 55 SLINVGLISVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL 113
Query: 68 DIDFNFGHLRELNLSSNKFQQIP----KCIFHLDNLEILILNNNDIEEI 112
+ L+ L+L + + + L L L + + +E
Sbjct: 114 EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 63.9 bits (156), Expect = 5e-13
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 8/136 (5%)
Query: 9 EQADLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLET 66
E+ DL L ++ F +T + L+L +N +Q L + + L L + L NN+L +
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 67 I--DIDFNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLV-KMQ 122
+ + + L +L L N+ + +P +F L L+ L LN N ++ I P K+
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI--PAGAFDKLT 155
Query: 123 KLTVLDLSNNNIRKIP 138
L L LS N ++ +P
Sbjct: 156 NLQTLSLSTNQLQSVP 171
Score = 60.1 bits (146), Expect = 2e-11
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 29 TSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDIDFNFGHLRE---LNLSSN 84
+LDL + L L L ++NL+ N+L+T+ F L E L L++N
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV-FDDLTELGTLGLANN 93
Query: 85 KFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLV-KMQKLTVLDLSNNNIRKIPYEL- 141
+ +P +F HL L+ L L N ++ + P + ++ KL L L+ N ++ IP
Sbjct: 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSL--PSGVFDRLTKLKELRLNTNQLQSIPAGAF 151
Query: 142 -GLAQQLHHLNLVGNCFK 158
L L L+L N +
Sbjct: 152 DKL-TNLQTLSLSTNQLQ 168
Score = 52.0 bits (125), Expect = 1e-08
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 11/104 (10%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETI-- 67
L+ N+L + +FD +T + +L L N +++LP + L L + L N+L++I
Sbjct: 89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148
Query: 68 ---DIDFNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNN 107
D +L+ L+LS+N+ Q +P F L L+ + L N
Sbjct: 149 GAFD---KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 62.0 bits (151), Expect = 7e-13
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 32 RELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPK 91
LD S + L L +++ N L +I L++L LS N+ +
Sbjct: 22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLE 81
Query: 92 CIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY 139
+ NL L L+ N I++++ E L K++ L LDL N + +
Sbjct: 82 VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130
Score = 50.8 bits (122), Expect = 1e-08
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
Query: 50 NLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDI 109
+++ LV N +N+ + + F L L+ + I + L+ L+ L L++N +
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRV 76
Query: 110 EEINQPEKLVKMQKLTVLDLSNNNIRKIP--YELGLAQQLHHLNLVGN 155
K LT L+LS N I+ + L + L L+L
Sbjct: 77 SGG-LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
Score = 50.1 bits (120), Expect = 2e-08
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 62 NKLETIDIDFNFGHLRELNLSSNKFQQIPK--CIFHLDNLEILILNNNDIEEINQPEKLV 119
++ + ++EL L +++ + + LE L N + I L
Sbjct: 5 RRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLP 61
Query: 120 KMQKLTVLDLSNNNIRKIPYELGLA-QQLHHLNLVGNCFK 158
K+ KL L+LS+N + L L HLNL GN K
Sbjct: 62 KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101
Score = 35.4 bits (82), Expect = 0.003
Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Query: 7 QVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNK-- 63
++E L + + L + +++L+LS N + L +L ++NL NK
Sbjct: 43 ELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101
Query: 64 -LETIDIDFNFGHLRELNLSSNKFQQIP----KCIFHLDNLEIL 102
L TI+ +L+ L+L + + + L L L
Sbjct: 102 DLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 62.7 bits (153), Expect = 9e-13
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 29 TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID-F-NFGHLRELNLSSNKF 86
+ EL L N +P +L N +HL ++L NN++ T+ F N L L LS N+
Sbjct: 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 87 QQIPKCIFH-LDNLEILILNNNDIEEINQPEKLV-KMQKLTVLDLSNN 132
+ IP F L +L +L L+ NDI + PE + L+ L + N
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDISVV--PEGAFNDLSALSHLAIGAN 136
Score = 52.3 bits (126), Expect = 6e-09
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 10/103 (9%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETI--- 67
L N+ +V +L + + +DLS+N I L N+ L+ + L N+L I
Sbjct: 37 YLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR 96
Query: 68 --DIDFNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNN 107
D LR L+L N +P+ F L L L + N
Sbjct: 97 TFD---GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 45.8 bits (109), Expect = 1e-06
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 77 RELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRK 136
EL L N+F +PK + + +L ++ L+NN I + + M +L L LS N +R
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRLRC 92
Query: 137 IPYEL--GLAQQLHHLNLVGN 155
IP GL + L L+L GN
Sbjct: 93 IPPRTFDGL-KSLRLLSLHGN 112
Score = 32.7 bits (75), Expect = 0.040
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 82 SSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIP 138
S+ + +PK I ++ L L+ N + P++L + LT++DLSNN I +
Sbjct: 18 SNKGLKVLPKGIPR--DVTELYLDGNQFTLV--PKELSNYKHLTLIDLSNNRISTLS 70
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 61.5 bits (150), Expect = 3e-12
Identities = 15/129 (11%), Positives = 45/129 (34%), Gaps = 7/129 (5%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNL-PPDLLNLRHLVYMNLENNKLETIDID 70
++ + + ++++ L + + + P+L L L +++ ++ + +
Sbjct: 72 TINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130
Query: 71 F--NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
+ ++LS N + L L+ L + + + + + KL L
Sbjct: 131 KINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY---RGIEDFPKLNQLY 187
Query: 129 LSNNNIRKI 137
+ I
Sbjct: 188 AFSQTIGGK 196
Score = 61.1 bits (149), Expect = 3e-12
Identities = 19/130 (14%), Positives = 50/130 (38%), Gaps = 3/130 (2%)
Query: 27 DITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKF 86
+ S+ + L++ + +L + ++ + + N + +L L +
Sbjct: 42 QMNSLTYITLANINVTDLTG-IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDV 100
Query: 87 QQI-PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQ 145
+ L +L +L ++++ + + K+ + K+ +DLS N L
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAH-DDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLP 159
Query: 146 QLHHLNLVGN 155
+L LN+ +
Sbjct: 160 ELKSLNIQFD 169
Score = 51.5 bits (124), Expect = 1e-08
Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Query: 34 LDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCI 93
L + N+ + L Y+ L N + + ++++L +++ I
Sbjct: 28 GLLGQSSTANITEA--QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY-NPI 84
Query: 94 FHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNL 152
L NLE L + D+ L + LT+LD+S++ + +++ ++L
Sbjct: 85 SGLSNLERLRIMGKDVTSDK-IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143
Query: 153 VGN 155
N
Sbjct: 144 SYN 146
Score = 44.2 bits (105), Expect = 4e-06
Identities = 14/107 (13%), Positives = 33/107 (30%), Gaps = 6/107 (5%)
Query: 50 NLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDI 109
+ + L + I L + L++ + I + N++ L +NN
Sbjct: 21 TFKAYLNGLLGQSSTANITEA-QMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHA 78
Query: 110 EEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGN 155
+ + L L + ++ L L L++ +
Sbjct: 79 TNY---NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 62.8 bits (152), Expect = 3e-12
Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Query: 14 SYNRLHVVNSKLFDITSIRELDLSHN-LIQNLPP-DLLNLRHLVYMNLENNKLETIDID- 70
+ + L ++ EL + + +Q+L DL L L + + + L + D
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75
Query: 71 -FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNN 107
L LNLS N + + +L+ L+L+ N
Sbjct: 76 FHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113
Score = 60.5 bits (146), Expect = 2e-11
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 75 HLRELNLSSNK-FQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNN 132
+L EL + + + Q + L L L + + + + P+ +L+ L+LS N
Sbjct: 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFN 90
Query: 133 NIRKIPYELGLAQQLHHLNLVGN 155
+ + ++ L L L GN
Sbjct: 91 ALESLSWKTVQGLSLQELVLSGN 113
Score = 49.0 bits (116), Expect = 2e-07
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 77 RELNLSSNKFQQIPKCIFHLDNLEILIL-NNNDIEEINQPEKLVKMQKLTVLDLSNNNIR 135
L + + + +NL L + N ++ + + L + +L L + + +R
Sbjct: 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLR 69
Query: 136 KIPYE--LGLAQQLHHLNLVGN 155
+ + +L LNL N
Sbjct: 70 FVAPDAFHFT-PRLSRLNLSFN 90
Score = 42.8 bits (100), Expect = 2e-05
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKL 64
+ + L V F + L+LS N +++L + L + L N L
Sbjct: 62 TIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 62.4 bits (152), Expect = 4e-12
Identities = 26/144 (18%), Positives = 57/144 (39%), Gaps = 10/144 (6%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
++ + ++ LD ++ I ++ + L L + +N + T+D+
Sbjct: 25 AAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTLDL-S 82
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
+L L SNK + + L L L + N + +++ + + LT L+ +
Sbjct: 83 QNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD----VSQNPLLTYLNCAR 136
Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
N + +I + QL L+ N
Sbjct: 137 NTLTEID--VSHNTQLTELDCHLN 158
Score = 60.5 bits (147), Expect = 2e-11
Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 12/144 (8%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
+ N+L ++ + L+ + N + + D+ + L ++ NK T
Sbjct: 112 NCDTNKLTKLDVSQN--PLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKLDVT 167
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
L L+ S NK ++ + L L + N+I +++ L + +LT LD S+
Sbjct: 168 PQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSS 221
Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
N + +I + QL + + N
Sbjct: 222 NKLTEID--VTPLTQLTYFDCSVN 243
Score = 59.7 bits (145), Expect = 4e-11
Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 12/144 (8%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
+ + N L ++ T + ELD N D+ L ++ NK+ +D+
Sbjct: 133 NCARNTLTEIDVSHN--TQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITELDVS- 188
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
L LN +N ++ + L L ++N + EI+ + + +LT D S
Sbjct: 189 QNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID----VTPLTQLTYFDCSV 242
Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
N + ++ + +L L+ +
Sbjct: 243 NPLTELD--VSTLSKLTTLHCIQT 264
Score = 59.7 bits (145), Expect = 4e-11
Identities = 25/144 (17%), Positives = 50/144 (34%), Gaps = 11/144 (7%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
D S N L ++ + + L + + DL + L+Y E +
Sbjct: 239 DCSVNPLTELDVSTL--SKLTTLHCIQTDLLEI--DLTHNTQLIYFQAEGCRKIKELDVT 294
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
+ L L+ + ++ + L L LNN ++ E++ + KL L N
Sbjct: 295 HNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD----VSHNTKLKSLSCVN 348
Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
+I+ +G L++
Sbjct: 349 AHIQDFS-SVGKIPALNNNFEAEG 371
Score = 56.6 bits (137), Expect = 5e-10
Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 8/123 (6%)
Query: 33 ELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKC 92
E+ + + L L ++ N+ + + L +L +SN +
Sbjct: 23 EVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-- 80
Query: 93 IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNL 152
+ NL L ++N + ++ + + KLT L+ N + K+ + L +LN
Sbjct: 81 LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNC 134
Query: 153 VGN 155
N
Sbjct: 135 ARN 137
Score = 52.0 bits (125), Expect = 2e-08
Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 8/109 (7%)
Query: 50 NLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDI 109
N V E +TI + L L+ ++ + I L L LI +N+I
Sbjct: 19 NFASEVAAAFEMQATDTISEE-QLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNI 76
Query: 110 EEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFK 158
++ L + LT L +N + + + +L +LN N
Sbjct: 77 TTLD----LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLT 119
Score = 46.6 bits (111), Expect = 1e-06
Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 4/96 (4%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
D + ++ L + L L++ + L D+ + L ++ N ++
Sbjct: 303 DCQAAGITELD--LSQNPKLVYLYLNNTELTEL--DVSHNTKLKSLSCVNAHIQDFSSVG 358
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNN 107
L + + +PK ++L I + +
Sbjct: 359 KIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDL 394
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 60.5 bits (147), Expect = 8e-12
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 29 TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDIDFNFGH---LRELNLSSN 84
T+ + L L N I L P + +L +L + L +N+L + + F L L+L +N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV-FDSLTQLTVLDLGTN 98
Query: 85 KFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIP 138
+ +P +F L +L+ L + N + E+ P + ++ LT L L N ++ IP
Sbjct: 99 QLTVLPSAVFDRLVHLKELFMCCNKLTEL--PRGIERLTHLTHLALDQNQLKSIP 151
Score = 54.3 bits (131), Expect = 1e-09
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 13/129 (10%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETI-- 67
L N++ + +FD + +++EL L N + LP + + L L ++L N+L +
Sbjct: 46 YLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS 105
Query: 68 ---DIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLV-KMQK 123
D HL+EL + NK ++P+ I L +L L L+ N ++ I P ++
Sbjct: 106 AVFD---RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSI--PHGAFDRLSS 160
Query: 124 LTVLDLSNN 132
LT L N
Sbjct: 161 LTHAYLFGN 169
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 57.7 bits (140), Expect = 6e-11
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 29 TSIRELDLSHNLIQNLPPDLL--NLRHLVYMNLENNKLETIDID-F-NFGHLRELNLSSN 84
EL L+ N + + D L L HLV + L+ N+L I+ + F H++EL L N
Sbjct: 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88
Query: 85 KFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLV-KMQKLTVLDLSNN 132
K ++I +F L L+ L L +N I + + LT L+L++N
Sbjct: 89 KIKEISNKMFLGLHQLKTLNLYDNQISCV--MPGSFEHLNSLTSLNLASN 136
Score = 55.8 bits (135), Expect = 3e-10
Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 20/122 (16%)
Query: 43 NLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLREL---NLSSNKFQQIPKCIF-HLDN 98
++P L L +N+L I D FG L L L N+ I F +
Sbjct: 26 DIPLHTTELL------LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79
Query: 99 LEILILNNNDIEEINQPEKL-VKMQKLTVLDLSNNNIRKIPY----ELGLAQQLHHLNLV 153
++ L L N I+EI K+ + + +L L+L +N I + L L LNL
Sbjct: 80 IQELQLGENKIKEI--SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL---NSLTSLNLA 134
Query: 154 GN 155
N
Sbjct: 135 SN 136
Score = 34.6 bits (80), Expect = 0.009
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 82 SSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYEL 141
+ ++IP+ I + L+LN+N++ I+ ++ L L+L N + I
Sbjct: 16 TGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA 73
Query: 142 --GLAQQLHHLNLVGN 155
G + + L L N
Sbjct: 74 FEGAS-HIQELQLGEN 88
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 56.6 bits (137), Expect = 2e-10
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 7/115 (6%)
Query: 29 TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETI--DIDFNFGHLRELNLSSNK 85
LDL N +++LP + L L + L NKL+++ + L LNLS+N+
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 86 FQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLV-KMQKLTVLDLSNNNIRKIP 138
Q +P +F L L+ L LN N ++ + P+ + K+ +L L L N ++ +P
Sbjct: 88 LQSLPNGVFDKLTQLKELALNTNQLQSL--PDGVFDKLTQLKDLRLYQNQLKSVP 140
Score = 53.5 bits (129), Expect = 2e-09
Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 14/136 (10%)
Query: 6 AQVEQADLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNK 63
AQ DL N L + + +FD +TS+ +L L N +Q+LP + N L L Y+NL N+
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 64 LETI-----DIDFNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEK 117
L+++ D L+EL L++N+ Q +P +F L L+ L L N ++ + P+
Sbjct: 88 LQSLPNGVFD---KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV--PDG 142
Query: 118 LV-KMQKLTVLDLSNN 132
+ ++ L + L +N
Sbjct: 143 VFDRLTSLQYIWLHDN 158
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 56.9 bits (138), Expect = 2e-10
Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 14/145 (9%)
Query: 2 IAKEAQVEQADLSYNRLHVVNSKL--FD-ITSIRELDLSHNLIQNLPPDLLN-LRHLVYM 57
I V L N+L + +T++ L L+ N +Q+LP + + L +L +
Sbjct: 59 IQYLPNVRYLALGGNKL----HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114
Query: 58 NLENNKLETI--DIDFNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQ 114
L N+L+++ + +L LNL+ N+ Q +PK +F L NL L L+ N ++ +
Sbjct: 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL-- 172
Query: 115 PEKLV-KMQKLTVLDLSNNNIRKIP 138
PE + K+ +L L L N ++ +P
Sbjct: 173 PEGVFDKLTQLKDLRLYQNQLKSVP 197
Score = 54.3 bits (131), Expect = 2e-09
Identities = 36/138 (26%), Positives = 70/138 (50%), Gaps = 12/138 (8%)
Query: 6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLP--PDLLNLRHLVYMNLENNK 63
A+ +A+L + ++ ++ SI ++ +++ I+++ L N+R+L L NK
Sbjct: 19 AETIKANLKKKSVTDAVTQN-ELNSIDQIIANNSDIKSVQGIQYLPNVRYL---ALGGNK 74
Query: 64 LETIDIDFNFGHLRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIE--EINQPEKLVK 120
L I +L L L+ N+ Q +P +F L NL+ L+L N ++ +KL
Sbjct: 75 LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT- 133
Query: 121 MQKLTVLDLSNNNIRKIP 138
LT L+L++N ++ +P
Sbjct: 134 --NLTYLNLAHNQLQSLP 149
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 51.1 bits (123), Expect = 1e-08
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 29 TSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETIDID-FN-FGHLRELNLSSNK 85
+S L+L N +Q+LP + + L L ++L N+++++ F+ L L L NK
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 86 FQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLV-KMQKLTVLDLSNN 132
Q +P +F L L+ L L+ N ++ + P+ + ++ L + L N
Sbjct: 88 LQSLPNGVFDKLTQLKELALDTNQLKSV--PDGIFDRLTSLQKIWLHTN 134
Score = 38.0 bits (89), Expect = 5e-04
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 77 RELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPE----KLVKMQKLTVLDLSN 131
L L SNK Q +P +F L L L L+ N I+ + P+ KL K LT+L L
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL--PDGVFDKLTK---LTILYLHE 85
Query: 132 NNIRKIP 138
N ++ +P
Sbjct: 86 NKLQSLP 92
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 46.1 bits (110), Expect = 7e-07
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 29 TSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETI-----DIDFNFGHLRELNLS 82
T+ + L L N I L P + + L L ++L+NN+L + D L +L+L+
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD---KLTQLTQLSLN 86
Query: 83 SNKFQQIPKCIF-HLDNLEILILNNN 107
N+ + IP+ F +L +L + L NN
Sbjct: 87 DNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 41.1 bits (97), Expect = 4e-05
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 77 RELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPE----KLVKMQKLTVLDLSN 131
+ L L N+ ++ +F L L L L+NN + + P KL + LT L L++
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL--PAGVFDKLTQ---LTQLSLND 87
Query: 132 NNIRKIP 138
N ++ IP
Sbjct: 88 NQLKSIP 94
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 45.7 bits (109), Expect = 8e-07
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 29 TSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETI-----DIDFNFGHLRELNLS 82
T + L L++N I L P + + L +L + +NKL I D L +L+L+
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD---KLTQLTQLDLN 89
Query: 83 SNKFQQIPKCIF-HLDNLEILILNNN 107
N + IP+ F +L +L + L NN
Sbjct: 90 DNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 41.1 bits (97), Expect = 4e-05
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 77 RELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPE----KLVKMQKLTVLDLSN 131
+ L L++N+ ++ +F HL NL+ L N+N + I P KL + LT LDL++
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI--PTGVFDKLTQ---LTQLDLND 90
Query: 132 NNIRKIP 138
N+++ IP
Sbjct: 91 NHLKSIP 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 46.2 bits (110), Expect = 1e-06
Identities = 30/188 (15%), Positives = 61/188 (32%), Gaps = 44/188 (23%)
Query: 12 DLSYNRL-----HVVNSKLFDITSIRELDLSHNLI-----QNLPPDLLNLRHLVYMNLEN 61
L + + V + L + S++E+ LS N I + L ++ + + L +
Sbjct: 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 69
Query: 62 NKLETIDIDFNFG------------HLRELNLSSNKF-----QQIPKCIFHLDNLEILIL 104
+ + L + LS N F + + + LE L L
Sbjct: 70 IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 129
Query: 105 NNNDI------------EEINQPEKLVKMQKLTVLDLSNNNI-----RKIPYELGLAQQL 147
+NN + +E+ +K L + N + ++ + L
Sbjct: 130 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189
Query: 148 HHLNLVGN 155
H + +V N
Sbjct: 190 HTVKMVQN 197
Score = 37.8 bits (88), Expect = 0.001
Identities = 26/190 (13%), Positives = 49/190 (25%), Gaps = 43/190 (22%)
Query: 29 TSIRELDLSHNLIQN----LPPDLLNLRHLVYMNLENNKLETIDIDFN------------ 72
T + L L +N + L + L +I N
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181
Query: 73 ----FGHLRELNLSSNKFQQ------IPKCIFHLDNLEILILNNNDIEE---INQPEKLV 119
L + + N + + + + + L++L L +N L
Sbjct: 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241
Query: 120 KMQKLTVLDLSNNNIRKI-------PYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFL 172
L L L++ + + L L L N I L
Sbjct: 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-------IELDAVRTL 294
Query: 173 LSYLRDKLPS 182
+ + +K+P
Sbjct: 295 KTVIDEKMPD 304
Score = 37.8 bits (88), Expect = 0.001
Identities = 33/165 (20%), Positives = 47/165 (28%), Gaps = 34/165 (20%)
Query: 25 LFDITSIRELDLSHNLI-----QNLPPDLLNLRHLVYMNLENNKL--------------- 64
L + + LS N + L L L ++ L NN L
Sbjct: 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 149
Query: 65 ETIDIDFNFGHLRELNLSSNKF-----QQIPKCIFHLDNLEILILNNNDIE----EINQP 115
N LR + N+ ++ K L + + N I E
Sbjct: 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL 209
Query: 116 EKLVKMQKLTVLDLSNNNI-----RKIPYELGLAQQLHHLNLVGN 155
E L Q+L VLDL +N + L L L L
Sbjct: 210 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254
Score = 33.5 bits (77), Expect = 0.025
Identities = 22/129 (17%), Positives = 40/129 (31%), Gaps = 24/129 (18%)
Query: 29 TSIRELDLSHNLI-----QNLPPDLLNLRHLVYMNLENNKLET---IDI-----DFNFGH 75
++ LDL N L L + +L + L + L +
Sbjct: 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG 275
Query: 76 LRELNLSSNKF-----QQIPKCIF-HLDNLEILILNNNDIEEINQP-----EKLVKMQKL 124
L+ L L N+ + + I + +L L LN N E + E +
Sbjct: 276 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRG 335
Query: 125 TVLDLSNNN 133
+ +L +
Sbjct: 336 ELDELDDME 344
Score = 33.5 bits (77), Expect = 0.028
Identities = 29/152 (19%), Positives = 50/152 (32%), Gaps = 30/152 (19%)
Query: 12 DLSYNRL-----HVVNSKLFDITSIRELDLSHNLIQN------LPPDLLNLRHLVYMNLE 60
NRL + + + N I+ L L + L ++L+
Sbjct: 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQ 224
Query: 61 NNKLETIDIDF------NFGHLRELNLSSNKF-----QQIPKCIFHLDN--LEILILNNN 107
+N + ++ +LREL L+ + L+N L+ L L N
Sbjct: 225 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 284
Query: 108 DIEE-----INQPEKLVKMQKLTVLDLSNNNI 134
+IE + KM L L+L+ N
Sbjct: 285 EIELDAVRTLKTVID-EKMPDLLFLELNGNRF 315
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 42.7 bits (100), Expect = 2e-05
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Query: 57 MNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPE 116
++L+ + + + N LN S + ++ L L L+NN + ++
Sbjct: 132 LDLKGLRSDPDLVAQNI--DVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMS 189
Query: 117 KLVKMQK-LTVLDLSNNNIRKIPYELGLAQQLH--HLNLVGN 155
+V+ L +L+LS N ++ EL + L L L GN
Sbjct: 190 SIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGN 230
Score = 28.4 bits (63), Expect = 1.4
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 7 QVEQADLSYNR---LHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENN 62
++ +LS NR L ++S + +++ L+LS N +++ D + L + L+ N
Sbjct: 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 230
Query: 63 KLETIDID 70
L D
Sbjct: 231 SLCDTFRD 238
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 40.8 bits (96), Expect = 8e-05
Identities = 20/133 (15%), Positives = 46/133 (34%), Gaps = 30/133 (22%)
Query: 29 TSIRELDLSHNLIQN---------LPPDLLNLRHLVYMNLENNKLETIDIDF-------N 72
++ L+L N + + L ++ L +L N L
Sbjct: 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL---DLSANLLGLKSYAELAYIFSSI 223
Query: 73 FGHLRELNLSSNKF-----QQIPKCIFHLDNLEILILNNNDIEEINQP------EKLVKM 121
H+ LNL N + + L +L+ + L+ + ++ +++ +
Sbjct: 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI 283
Query: 122 QKLTVLDLSNNNI 134
QK+ ++D + I
Sbjct: 284 QKIILVDKNGKEI 296
Score = 30.8 bits (70), Expect = 0.19
Identities = 30/136 (22%), Positives = 44/136 (32%), Gaps = 29/136 (21%)
Query: 48 LLNLRHLVYMNLENNKLETIDIDF-------NFGHLRELNLSSNKFQQIPKCIFHL---- 96
+ ++L N L +I + LNLS N K L
Sbjct: 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG--FKNSDELVQIL 75
Query: 97 ----DNLEILILNNNDIEEINQPEKLVKM-----QKLTVLDLSNNNIRKIPYE------L 141
N+ L L+ N + + ++LVK +TVLDL N+
Sbjct: 76 AAIPANVTSLNLSGNFLSYKSS-DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS 134
Query: 142 GLAQQLHHLNLVGNCF 157
L + LNL GN
Sbjct: 135 NLPASITSLNLRGNDL 150
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens}
PDB: 3rez_A*
Length = 130
Score = 38.6 bits (90), Expect = 2e-04
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 29 TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENN 62
EL L+ N + LPP LL L L +L N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 35.2 bits (81), Expect = 0.003
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 75 HLRELNLSSNKFQQIPKCIF-HLDNLEILILNNN 107
EL L+ N +P + L L L N
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 31.7 bits (72), Expect = 0.062
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 124 LTVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
T L L+ NN+ +P L L L +L N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALP-ALRTAHLGAN 65
Score = 29.0 bits (65), Expect = 0.50
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 98 NLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNN 132
+ L+L N++ + P L + L L N
Sbjct: 32 DTTELVLTGNNLTAL-PPGLLDALPALRTAHLGAN 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 39.6 bits (93), Expect = 2e-04
Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 21/127 (16%)
Query: 29 TSIRELDLSHNLIQN-----LPPDLLN-LRHLVYMNLENNKLETIDIDF------NFGHL 76
S+REL L N + + L P LL+ L + + + L
Sbjct: 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 286
Query: 77 RELNLSSNKF-----QQIPKCIFHLD-NLEILILNNNDIEEINQP---EKLVKMQKLTVL 127
+EL+L+ N+ + + + + LE L + + L + + L L
Sbjct: 287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346
Query: 128 DLSNNNI 134
+SNN +
Sbjct: 347 QISNNRL 353
Score = 39.6 bits (93), Expect = 3e-04
Identities = 33/162 (20%), Positives = 52/162 (32%), Gaps = 42/162 (25%)
Query: 7 QVEQADLSYNRL-----HVVNSKLFDITSIRELDLSHNLIQN---------LPPDLLNLR 52
Q + L L ++S L ++ EL+L N + + L ++
Sbjct: 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQ 88
Query: 53 HLVYMNLENNKLETIDIDF------NFGHLRELNLSSNKFQ-----------QIPKCIFH 95
L +L+N L L+EL+LS N P+C
Sbjct: 89 KL---SLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC--- 142
Query: 96 LDNLEILILNNNDI-EEINQP--EKLVKMQKLTVLDLSNNNI 134
LE L L + +P L L +SNN+I
Sbjct: 143 --RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182
Score = 39.2 bits (92), Expect = 4e-04
Identities = 29/154 (18%), Positives = 56/154 (36%), Gaps = 36/154 (23%)
Query: 12 DLSYNRL-----HVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENN-KLE 65
L L V++S L + +++EL LS NL+ + L+ L L+ +LE
Sbjct: 91 SLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA-----GLQLLCEGLLDPQCRLE 145
Query: 66 TIDIDFN-FG---------------HLRELNLSSNKF-----QQIPKCIFHLD-NLEILI 103
+ +++ +EL +S+N + + + + LE L
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205
Query: 104 LNNNDIEEINQP---EKLVKMQKLTVLDLSNNNI 134
L + + N + L L L +N +
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239
Score = 38.8 bits (91), Expect = 4e-04
Identities = 27/131 (20%), Positives = 42/131 (32%), Gaps = 33/131 (25%)
Query: 29 TSIRELDLSHNLIQN-----LPPDLLNLRHLVYMNLENNKLETIDIDF------NFGHLR 77
I+ LD+ + + L P L + + L++ L L
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVV---RLDDCGLTEARCKDISSALRVNPALA 59
Query: 78 ELNLSSNKFQ-----------QIPKCIFHLDNLEILILNNNDIEEINQP---EKLVKMQK 123
ELNL SN+ Q P C ++ L L N + L +
Sbjct: 60 ELNLRSNELGDVGVHCVLQGLQTPSC-----KIQKLSLQNCCLTGAGCGVLSSTLRTLPT 114
Query: 124 LTVLDLSNNNI 134
L L LS+N +
Sbjct: 115 LQELHLSDNLL 125
Score = 34.6 bits (80), Expect = 0.012
Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 27/130 (20%)
Query: 29 TSIRELDLSHNLIQN---------LPPDLLNLRHLVYMNLENNKLETIDIDF------NF 73
S++EL L+ N + + L L L +++
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESL---WVKSCSFTAACCSHFSSVLAQN 340
Query: 74 GHLRELNLSSNKF-----QQIPKCIFHLD-NLEILILNNNDIEEINQP---EKLVKMQKL 124
L EL +S+N+ +++ + + L +L L + D+ + + L+ L
Sbjct: 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400
Query: 125 TVLDLSNNNI 134
LDLSNN +
Sbjct: 401 RELDLSNNCL 410
Score = 29.9 bits (68), Expect = 0.48
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 98 NLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNI-----RKIPYELGLAQQLHHLNL 152
+++ L + ++ + E L +Q+ V+ L + + + I L + L LNL
Sbjct: 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63
Query: 153 VGN 155
N
Sbjct: 64 RSN 66
Score = 29.9 bits (68), Expect = 0.51
Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 38/111 (34%)
Query: 29 TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENN-KLETIDIDFNF-------------- 73
+ EL +S+N +++ +R L + L + +
Sbjct: 341 RFLLELQISNNRLEDA-----GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL 395
Query: 74 --GHLRELNLSSNKFQ-----------QIPKCIFHLDNLEILILNNNDIEE 111
LREL+LS+N + P C LE L+L + E
Sbjct: 396 ANHSLRELDLSNNCLGDAGILQLVESVRQPGC-----LLEQLVLYDIYWSE 441
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 35.3 bits (80), Expect = 0.008
Identities = 18/105 (17%), Positives = 42/105 (40%), Gaps = 19/105 (18%)
Query: 47 DLLNLRHL-VYMNLENNKLETIDIDF-------NFGHLRELNLSSNKFQ-QIPKCIFH-- 95
DL NL L +Y+ +E+ + F F +L+ L + + Q + +
Sbjct: 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD 276
Query: 96 -LDNLEILILNNNDI-----EEINQPEKLVKMQKLTVLDLSNNNI 134
L LE + ++ + + + + K++ L +++ N +
Sbjct: 277 ILPQLETMDISAGVLTDEGARLL--LDHVDKIKHLKFINMKYNYL 319
Score = 29.9 bits (66), Expect = 0.40
Identities = 8/102 (7%), Positives = 35/102 (34%), Gaps = 20/102 (19%)
Query: 30 SIRELDL---SHNLIQNLPPDLL-------NLRHLVYMNLENNKL-----ETIDIDFNFG 74
++ +L L + + ++ +L ++ + + + E
Sbjct: 220 NLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP 279
Query: 75 HLRELNLSSNKF-----QQIPKCIFHLDNLEILILNNNDIEE 111
L +++S+ + + + + +L+ + + N + +
Sbjct: 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321
Score = 28.4 bits (62), Expect = 1.6
Identities = 8/42 (19%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 28 ITSIRELDLSHNLI-----QNLPPDLLNLRHLVYMNLENNKL 64
+ + +D+S ++ + L + ++HL ++N++ N L
Sbjct: 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 34.3 bits (79), Expect = 0.014
Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 38/135 (28%)
Query: 29 TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNK-LETIDIDFN-------------FG 74
+S+R+L+L+ + + + + L+ +++ F
Sbjct: 72 SSLRQLNLAGVRMTPV-----KCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL 126
Query: 75 HLRELNLSSNKFQ-----------QIPKCIFHLDNLEILILNNNDIEEINQP---EKLVK 120
R+L L N +C + L L+NN + E L
Sbjct: 127 RARKLGLQLNSLGPEACKDLRDLLLHDQC-----QITTLRLSNNPLTAAGVAVLMEGLAG 181
Query: 121 MQKLTVLDLSNNNIR 135
+T L L + +
Sbjct: 182 NTSVTHLSLLHTGLG 196
Score = 30.1 bits (68), Expect = 0.43
Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 25/114 (21%)
Query: 29 TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKF-- 86
I L LS+N + + L+ L N + L+L
Sbjct: 155 CQITTLRLSNNPLTAA-----GVAVLMEG-LAGNT-----------SVTHLSLLHTGLGD 197
Query: 87 ---QQIPKCIFHLDNLEILILNNNDIEEINQP---EKLVKMQKLTVLDLSNNNI 134
+ + + L+ L + N + + L +L L N +
Sbjct: 198 EGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251
Score = 26.2 bits (58), Expect = 7.3
Identities = 17/138 (12%), Positives = 39/138 (28%), Gaps = 22/138 (15%)
Query: 29 TSIRELDLSHNLIQN--------LPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELN 80
S+ L L N + + L +V E + ++ L E+
Sbjct: 239 PSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS----EYWSVILSEVQ 294
Query: 81 LSSNKFQQIPKCIFHLDNLEILILNNNDIEEIN---QPEKLVKMQKLTVLDLSNNNI--- 134
+ N + + + L + L ++ +N + + L ++ L +
Sbjct: 295 RNLNSWDRA--RVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSP 352
Query: 135 --RKIPYELGLAQQLHHL 150
+ HH
Sbjct: 353 SGSWSHPQFEKGAGHHHH 370
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.13
Identities = 24/146 (16%), Positives = 43/146 (29%), Gaps = 22/146 (15%)
Query: 38 HNLIQNLPPDLLNLRHL---------VYMNLENNKLETIDID---FNF-G-HLRELNLSS 83
++ L L N L + +++ L +D ++ G HL+ +
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP- 487
Query: 84 NKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI--PYEL 141
+ LE I +D N ++ L L I YE
Sbjct: 488 ERMTLFRMVFLDFRFLEQKI--RHDSTAWNASGSILNT--LQQLKFYKPYICDNDPKYER 543
Query: 142 GLAQQLHHLNLVG-NCFKYPRQDILQ 166
+ L L + N D+L+
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLR 569
Score = 29.4 bits (65), Expect = 0.73
Identities = 18/134 (13%), Positives = 44/134 (32%), Gaps = 34/134 (25%)
Query: 53 HLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEI 112
H +M+ E + + + + + + F C + ++ IL+ +I+ I
Sbjct: 3 HHHHMDFETGE-----HQYQYKDILSVFE--DAFVDNFDC-KDVQDMPKSILSKEEIDHI 54
Query: 113 -NQPEKLVKMQKL-TVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTP 170
+ + +L L + + E ++L+
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVE----------------------EVLRINYK 92
Query: 171 FLLSYLR--DKLPS 182
FL+S ++ + PS
Sbjct: 93 FLMSPIKTEQRQPS 106
Score = 26.4 bits (57), Expect = 7.3
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 11/80 (13%)
Query: 31 IRELDLSHNLIQNLPPDLLNLR-HLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQQ 88
IR + N ++ L L+ + Y+ + K E + +F E NL +K
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK--- 563
Query: 89 IPKCIFHLDNLEILILNNND 108
+ D L I ++ ++
Sbjct: 564 ------YTDLLRIALMAEDE 577
Score = 26.4 bits (57), Expect = 8.0
Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 15/147 (10%)
Query: 5 EAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKL 64
+ + + Y + V F + D +Q++P +L+ + ++ + + +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAF----VDNFDCKD--VQDMPKSILSKEEIDHIIMSKDAV 61
Query: 65 ETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDI-EEINQPEKLVKMQK 123
F L Q+ + + N + L+ + I E QP + +M
Sbjct: 62 SGTL--RLFWTLLSKQ--EEMVQKFVEEVLR-INYKFLM---SPIKTEQRQPSMMTRMYI 113
Query: 124 LTVLDLSNNNIRKIPYELGLAQQLHHL 150
L N+N Y + Q L
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKL 140
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.14
Identities = 22/102 (21%), Positives = 30/102 (29%), Gaps = 21/102 (20%)
Query: 27 DITSIRELDLSHNLIQ---NLPPDLL----NLRHLVYMNLENNKLETIDID--------- 70
D S R L LSH ++ +P L+ L D
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 71 FNF-GHLREL--NLSSNKFQQIPKCIFHLDNLEILILNNNDI 109
F G++ L +F Q+ L E L NDI
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLC--LTEFENCYLEGNDI 101
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix
motif, developmental protein, phosphoprotein; 1.50A
{Arabidopsis thaliana}
Length = 169
Score = 28.4 bits (63), Expect = 1.1
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 71 FNFGHLREL----NLSSNKFQQIPK--CIFHLDNLEILILNNNDIEEINQPEKLVKMQKL 124
F F + L L +F N + ++ P++++K+++L
Sbjct: 40 FAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNATRLPHLS-PDQILKLKQL 98
Query: 125 TVLDLSNNNIRKIPYELGLAQQLH 148
TVL L+ +N + +PY+ L +L
Sbjct: 99 TVLTLAESN-KVLPYDT-LMVELD 120
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome
biogenesis, methyltransferase, processing, ribosomal
protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB:
3oij_A* 3oin_A* 2v3j_A 2v3k_A*
Length = 253
Score = 28.0 bits (62), Expect = 1.8
Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 18/127 (14%)
Query: 13 LSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHL--VYMNLENNKLETIDID 70
L+ + + K+ S D++H + L +N VY+ L ++
Sbjct: 69 LNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPT 128
Query: 71 FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLS 130
+IP+ L + +L+ I +N EKL+K+ K + D
Sbjct: 129 V----------------RIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHL 172
Query: 131 NNNIRKI 137
RK+
Sbjct: 173 PTKCRKV 179
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 27.5 bits (61), Expect = 1.8
Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 12/100 (12%)
Query: 42 QNLPPDLLNLRHLVYMNLENNKLETIDIDFNFG--HLRELNLSSNKFQQI-PKCIFHLDN 98
+LP L+ + ++ ++ + +I D G ++ ++ L I C+ L
Sbjct: 51 NHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH--YIEDGCLERLSQ 108
Query: 99 LEILILNNNDIEEINQP-------EKLVKMQKLTVLDLSN 131
LE L + ++E I+ L + L L LS+
Sbjct: 109 LENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD 148
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 27.6 bits (61), Expect = 3.0
Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 5/108 (4%)
Query: 29 TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLE--NNKLETIDIDFNFGHLRELNLSSNKF 86
S+ + + I L +L N + + N R+L +
Sbjct: 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY 279
Query: 87 ---QQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
++P + L L +E + + K L VL+ N
Sbjct: 280 MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN 327
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 26.9 bits (60), Expect = 3.3
Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 27/116 (23%)
Query: 29 TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKF-- 86
T +++ + + L M L+ N L+ LN+ SN
Sbjct: 65 TYVKKFSIVGTRSND-----PVAFALAEM-LKVNN-----------TLKSLNVESNFISG 107
Query: 87 ---QQIPKCIFHLDNLEILILNNNDIEEINQPEK-----LVKMQKLTVLDLSNNNI 134
+ + + +L L ++N N E L K L
Sbjct: 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.396
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,754,329
Number of extensions: 158795
Number of successful extensions: 3417
Number of sequences better than 10.0: 1
Number of HSP's gapped: 708
Number of HSP's successfully gapped: 462
Length of query: 183
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 95
Effective length of database: 4,244,745
Effective search space: 403250775
Effective search space used: 403250775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.4 bits)