RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3781
(183 letters)
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 56.2 bits (134), Expect = 2e-10
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
DL+ N++ + L +T + EL L N I N+ P L L L + L N+LE I
Sbjct: 247 DLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPIS 304
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
N +L L L N I + L L+ L NN + + L + + L +
Sbjct: 305 NLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSD---VSSLANLTNINWLSAGH 360
Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
N I + L ++ L L
Sbjct: 361 NQISDLT-PLANLTRITQLGLNDQ 383
Score = 49.6 bits (117), Expect = 4e-08
Identities = 34/151 (22%), Positives = 61/151 (40%), Gaps = 26/151 (17%)
Query: 29 TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQ 88
T++ EL L+ N ++++ L +L +L ++L NN++ + L EL L +N+
Sbjct: 219 TNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN 277
Query: 89 IP---------------------KCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
I I +L NL L L N+I +I + + KL L
Sbjct: 278 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI---SPVSSLTKLQRL 334
Query: 128 DLSNNNIRKIPYELGLAQQLHHLNLVGNCFK 158
+NN + + L ++ L+ N
Sbjct: 335 FFANNKVSDVS-SLANLTNINWLSAGHNQIS 364
Score = 40.0 bits (92), Expect = 7e-05
Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 4/126 (3%)
Query: 50 NLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDI 109
L +L + NN++ I +L EL+L+ N+ + I + L NL L L NN I
Sbjct: 195 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQI 253
Query: 110 EEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGT 169
+ L + KLT L L N I I GL + L+ T
Sbjct: 254 SNL---APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLT 310
Query: 170 PFLLSY 175
L +
Sbjct: 311 YLTLYF 316
Score = 35.4 bits (80), Expect = 0.002
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 70 DFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDL 129
D + L LD + L + I+ I + + + LT ++
Sbjct: 18 DTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSI---DGVEYLNNLTQINF 73
Query: 130 SNNNIRKIP 138
SNN + I
Sbjct: 74 SNNQLTDIT 82
Score = 34.6 bits (78), Expect = 0.004
Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Query: 50 NLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDI 109
L + L + + + L + I + +L+NL + +NN +
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQL 78
Query: 110 EEINQPEKLVKMQKL 124
+I + L K+ +
Sbjct: 79 TDITPLKNLTKLVDI 93
Score = 33.8 bits (76), Expect = 0.009
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 5/120 (4%)
Query: 38 HNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLD 97
L NL L +++ +NK+ I + +L L ++N+ I
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL-T 219
Query: 98 NLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCF 157
NL+ L LN N +++I L + LT LDL+NN I + L +L L L N
Sbjct: 220 NLDELSLNGNQLKDIGT---LASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQI 275
Score = 32.7 bits (73), Expect = 0.019
Identities = 10/66 (15%), Positives = 18/66 (27%), Gaps = 1/66 (1%)
Query: 93 IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNL 152
IF L + + + ++T L I+ I + L +N
Sbjct: 15 IFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINF 73
Query: 153 VGNCFK 158
N
Sbjct: 74 SNNQLT 79
Score = 25.0 bits (53), Expect = 6.6
Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 7 QVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMN 58
QV + ++ + + ++ +++ S+N + ++ P L NL LV +
Sbjct: 45 QVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDIL 94
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 53.6 bits (128), Expect = 2e-10
Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 32 RELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPK 91
R L L+H + L L L + +++L +N+L + E+ +S+ +
Sbjct: 1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59
Query: 92 CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIP-YELGLAQQLHHL 150
+ +L L+ L+L NN +++ + LV +L +L+L N++ + + LA+ L +
Sbjct: 60 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 119
Query: 151 N 151
+
Sbjct: 120 S 120
Score = 42.8 bits (100), Expect = 2e-06
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Query: 56 YMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQP 115
++L + L + + L+LS N+ + +P + L LE+L +
Sbjct: 2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVL---QASDNALENV 58
Query: 116 EKLVKMQKLTVLDLSNNNIRKIP--YELGLAQQLHHLNLVGNCF 157
+ + + +L L L NN +++ L +L LNL GN
Sbjct: 59 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102
Score = 32.8 bits (74), Expect = 0.008
Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 7 QVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLET 66
V DLS+NRL + L + + L S N ++N+ R + L NN+L+
Sbjct: 21 LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQ-ELLLCNNRLQQ 79
Query: 67 IDIDFNFG---HLRELNLSSNKFQQIPKCIFHLDNL 99
L LNL N Q L +
Sbjct: 80 SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115
Score = 28.5 bits (63), Expect = 0.21
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 101 ILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYP 160
+L L + D+ + L ++ +T LDLS+N +R +P L + L L N +
Sbjct: 2 VLHLAHKDLTVL---CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Score = 26.6 bits (58), Expect = 0.95
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 126 VLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDI 164
VL L++ ++ + L + HL+L N + +
Sbjct: 2 VLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPAL 39
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 51.7 bits (122), Expect = 7e-09
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 26 FDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNK 85
S+ EL++S+N + LP L L N L + +L++L++ N
Sbjct: 281 DLPPSLEELNVSNNKLIELPALPPRLERL---IASFNHLAEVP--ELPQNLKQLHVEYNP 335
Query: 86 FQQIPKCIFHLDNLEI 101
++ P +++L +
Sbjct: 336 LREFPDIPESVEDLRM 351
Score = 48.7 bits (114), Expect = 8e-08
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 71 FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLS 130
L ELN+S+NK ++P LE LI + N + E+ + Q L L +
Sbjct: 281 DLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPE-----LPQNLKQLHVE 332
Query: 131 NNNIRKIPYELGLAQQLHHLNL 152
N +R+ P + L +
Sbjct: 333 YNPLREFPDIPE---SVEDLRM 351
Score = 43.7 bits (101), Expect = 5e-06
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Query: 37 SHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHL 96
S N I++L +L L N+ NNKL + L L S N ++P+
Sbjct: 272 SSNEIRSLCDLPPSLEEL---NVSNNKLIELP--ALPPRLERLIASFNHLAEVPEL---P 323
Query: 97 DNLEILILNNNDIEEI-NQPEKLVKMQ 122
NL+ L + N + E + PE + ++
Sbjct: 324 QNLKQLHVEYNPLREFPDIPESVEDLR 350
Score = 41.0 bits (94), Expect = 3e-05
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
++S N+L + + + L S N + +P NL+ L ++E N L
Sbjct: 290 NVSNNKLIELPA---LPPRLERLIASFNHLAEVPELPQNLKQL---HVEYNPLREFPD-- 341
Query: 72 NFGHLRELNLSS 83
+ +L ++S
Sbjct: 342 IPESVEDLRMNS 353
Score = 39.0 bits (89), Expect = 1e-04
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 88 QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQL 147
+I +LE L ++NN + E+ P +L L S N++ ++P Q L
Sbjct: 275 EIRSLCDLPPSLEELNVSNNKLIEL--PALP---PRLERLIASFNHLAEVPELP---QNL 326
Query: 148 HHLNLVGNCFK 158
L++ N +
Sbjct: 327 KQLHVEYNPLR 337
Score = 33.3 bits (74), Expect = 0.014
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 52 RHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEE 111
R + L N L ++ HL L S N ++P+ L +L + N + +
Sbjct: 38 RQAHELELNNLGLSSLPE--LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD 95
Query: 112 INQ 114
+
Sbjct: 96 LPP 98
Score = 30.9 bits (68), Expect = 0.066
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 98 NLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNL 152
L LNN + + PE L L S N++ ++P + L N
Sbjct: 39 QAHELELNNLGLSSL--PELP---PHLESLVASCNSLTELPELPQSLKSLLVDNN 88
Score = 30.9 bits (68), Expect = 0.076
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 123 KLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFK 158
+ L+L+N + +P L L N
Sbjct: 39 QAHELELNNLGLSSLPELPP---HLESLVASCNSLT 71
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 50.8 bits (120), Expect = 2e-08
Identities = 31/155 (20%), Positives = 64/155 (41%), Gaps = 10/155 (6%)
Query: 7 QVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLE 65
++ ++ + + L S+ EL L N I + L L +L + L N +
Sbjct: 151 KLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208
Query: 66 TIDIDFNFGH--LRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQ-----PEKL 118
+D LREL+L++NK ++P + ++++ L+NN+I I P
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 268
Query: 119 VKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLV 153
K + + L +N ++ + + ++ V
Sbjct: 269 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 303
Score = 48.9 bits (115), Expect = 5e-08
Identities = 30/167 (17%), Positives = 54/167 (32%), Gaps = 5/167 (2%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
S L V L LDL +N I + NL++L + L NNK+ I
Sbjct: 16 QCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG 73
Query: 71 --FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
L L LS N+ +++P+ + + N + L +M + +
Sbjct: 74 AFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 133
Query: 129 LSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSY 175
+ ++L ++ + Q + T L
Sbjct: 134 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDG 180
Score = 41.9 bits (97), Expect = 1e-05
Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 1/123 (0%)
Query: 37 SHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHL 96
++ L Y+ + + + TI L EL+L NK ++
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVDAASLKG 193
Query: 97 DNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNC 156
N + + + L L L L+NN + K+P L + + + L N
Sbjct: 194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253
Query: 157 FKY 159
Sbjct: 254 ISA 256
Score = 36.2 bits (82), Expect = 0.001
Identities = 25/158 (15%), Positives = 46/158 (29%), Gaps = 9/158 (5%)
Query: 12 DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLNLRHLVYMN---LENNKLETI 67
L N++ ++ F + + L LS N ++ LP + + ++ + +
Sbjct: 61 ILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVF 120
Query: 68 DIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
+ + + L + + + +I I Q LT L
Sbjct: 121 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG----LPPSLTEL 176
Query: 128 DLSNNNIRK-IPYELGLAQQLHHLNLVGNCFKYPRQDI 164
L N I K L L L L N
Sbjct: 177 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 214
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 44.9 bits (105), Expect = 7e-07
Identities = 14/66 (21%), Positives = 28/66 (42%)
Query: 57 MNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPE 116
+ L +E N REL+L K I LD + + ++N+I +++
Sbjct: 1 VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP 60
Query: 117 KLVKMQ 122
L +++
Sbjct: 61 LLRRLK 66
Score = 44.5 bits (104), Expect = 1e-06
Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 2/130 (1%)
Query: 23 SKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLS 82
++ + RELDL I + L ++ +N++ +D L+ L ++
Sbjct: 12 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVN 71
Query: 83 SNKFQ-QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIP-YE 140
+N+ L +L LIL NN + E+ + L ++ LT L + N + Y
Sbjct: 72 NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYR 131
Query: 141 LGLAQQLHHL 150
L + ++ +
Sbjct: 132 LYVIYKVPQV 141
Score = 34.9 bits (79), Expect = 0.002
Identities = 9/48 (18%), Positives = 14/48 (29%)
Query: 112 INQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKY 159
I Q + + LDL I I Q ++ N +
Sbjct: 8 IEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK 55
Score = 29.9 bits (66), Expect = 0.11
Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 7/125 (5%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETI--DI 69
DL ++ V+ + + +D S N I+ L LR L + + NN++ I +
Sbjct: 24 DLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF-PLLRRLKTLLVNNNRICRIGEGL 82
Query: 70 DFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEK----LVKMQKLT 125
D L EL L++N ++ + L N+ + K+ ++
Sbjct: 83 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVR 142
Query: 126 VLDLS 130
VLD
Sbjct: 143 VLDFQ 147
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 44.3 bits (103), Expect = 2e-06
Identities = 30/192 (15%), Positives = 51/192 (26%), Gaps = 50/192 (26%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDID 70
+ L + L L LS NL+ L+ L +NL+ +L + +D
Sbjct: 16 NCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD 73
Query: 71 FNFGHLRELNL-----------------------------------------------SS 83
L L+L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 84 NKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGL 143
N+ + +P + + N+ L ++ L L L N++ IP
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Query: 144 AQQLHHLNLVGN 155
+ L L GN
Sbjct: 194 SHLLPFAFLHGN 205
Score = 35.8 bits (81), Expect = 0.002
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 27 DITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSN 84
+ S E++ + LPPDL + ++L N L T + + L +LNL
Sbjct: 8 KVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65
Query: 85 KFQQIPKCIF 94
+ ++
Sbjct: 66 ELTKLQVDGT 75
Score = 33.9 bits (76), Expect = 0.007
Identities = 9/49 (18%), Positives = 16/49 (32%)
Query: 16 NRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKL 64
N + L + ++ L L N + +P L + L N
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
Score = 33.5 bits (75), Expect = 0.008
Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 6/104 (5%)
Query: 37 SHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID-FNFGHLRELNLSSNKFQQIPKCIF 94
++N + LP LL L +L + L+ N L TI F L L N + C
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL----CNC 211
Query: 95 HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIP 138
+ + +N + + + VK V + +N K P
Sbjct: 212 EILYFRRWLQDNAENVYVWKQGVDVKAMTSNVASVQCDNSDKFP 255
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 42.9 bits (99), Expect = 7e-06
Identities = 29/161 (18%), Positives = 47/161 (29%), Gaps = 7/161 (4%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
L V + + + + L N I ++P R+L + L +N L ID
Sbjct: 17 SCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74
Query: 71 FNFGHLRELNLSSNKFQQI----PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
G L + Q+ P L L L L+ ++E+ +
Sbjct: 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134
Query: 127 LDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQK 167
N L HL L GN + +
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175
Score = 37.5 bits (85), Expect = 4e-04
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 4/143 (2%)
Query: 19 HVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRH-LVYMNLENNKLETI--DIDFNFGH 75
V + + + L L +Q L P L L Y+ L++N L+ + D + G+
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154
Query: 76 LRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNI 134
L L L N+ +P+ F L +L+ L+L+ N + ++ + +T+ +NN
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214
Query: 135 RKIPYELGLAQQLHHLNLVGNCF 157
L + L +L L N +
Sbjct: 215 ALPTEALAPLRALQYLRLNDNPW 237
Score = 37.5 bits (85), Expect = 4e-04
Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 3/140 (2%)
Query: 19 HVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID--FNFGH 75
+ + +++ L L N +Q LP D +L +L ++ L N++ ++
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178
Query: 76 LRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR 135
L L L N+ + F + + + E L ++ L L L++N
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238
Query: 136 KIPYELGLAQQLHHLNLVGN 155
L L +
Sbjct: 239 CDCRARPLWAWLQKFRGSSS 258
Score = 32.9 bits (73), Expect = 0.014
Identities = 24/127 (18%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
Query: 13 LSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
L NR+ V + F + S+ L L N + ++ P +L L+ + L N L + +
Sbjct: 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219
Query: 71 F--NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
L+ L L+ N + + L+ +++++ + P++L +
Sbjct: 220 ALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEV-PCSLPQRL---AGRDLKR 275
Query: 129 LSNNNIR 135
L+ N+++
Sbjct: 276 LAANDLQ 282
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 40.1 bits (92), Expect = 7e-05
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 12 DLSYNRLH-VVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKL 64
DL NR++ + L + + L++S N + P NL+ NNK
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
Score = 39.0 bits (89), Expect = 1e-04
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 35 DLSHN-LIQNLPPDLLNLRHLVYMNLENNKLE-TIDIDFNFGHLRELNLSSNKFQ---QI 89
DL +N + LP L L+ L +N+ N L I N ++NK +
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309
Query: 90 PKC 92
P C
Sbjct: 310 PAC 312
Score = 37.4 bits (85), Expect = 6e-04
Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 80 NLSSNKFQ-QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNN 133
+L +N+ +P+ + L L L ++ N++ + + +Q+ V +NN
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG--EIPQGGNLQRFDVSAYANNK 302
Score = 36.7 bits (83), Expect = 0.001
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 86 FQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQ 145
+ K + + + NN + P+ L +++ L L++S NN+ + G Q
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTL--PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291
Query: 146 QLHHLNLVGN 155
+ N
Sbjct: 292 RFDVSAYANN 301
Score = 34.3 bits (77), Expect = 0.005
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 56 YMNLENNKLETIDID--FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNN 107
++L NN++ L LN+S N +L ++ NN
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301
Score = 32.8 bits (73), Expect = 0.020
Identities = 16/116 (13%), Positives = 33/116 (28%), Gaps = 6/116 (5%)
Query: 31 IRELDLSHNLIQN---LPPDLLNLRHLVYMNLENNKLETIDI---DFNFGHLRELNLSSN 84
+ LDLS + +P L NL +L ++ + I L L ++
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 85 KFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE 140
+ + + + P + + L + N I +
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Score = 32.0 bits (71), Expect = 0.032
Identities = 21/117 (17%), Positives = 38/117 (32%), Gaps = 4/117 (3%)
Query: 66 TIDIDFNFGHLRELNLSSNKFQ---QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQ 122
D D + L+LS IP + +L L L + + P + K+
Sbjct: 42 LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101
Query: 123 KLTVLDLSNNNIRK-IPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRD 178
+L L +++ N+ IP L + L L+ N + +
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158
Score = 31.3 bits (69), Expect = 0.062
Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 1/103 (0%)
Query: 56 YMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQP 115
M + N+L S + + + ++
Sbjct: 178 SMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237
Query: 116 EKLVKMQKLTVLDLSNNNIR-KIPYELGLAQQLHHLNLVGNCF 157
K+ + L LDL NN I +P L + LH LN+ N
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 39.0 bits (90), Expect = 8e-05
Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 2/123 (1%)
Query: 35 DLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIF 94
+L ++ L + L+ L + LN S+ +
Sbjct: 3 ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEE 62
Query: 95 HLDNLEILILNNNDIEEINQPEKLV-KMQKLTVLDLSNNNIRKIPY-ELGLAQQLHHLNL 152
++ L L L+NN + ++ +V K L +L+LS N ++ + +L L L
Sbjct: 63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 122
Query: 153 VGN 155
GN
Sbjct: 123 DGN 125
Score = 24.8 bits (53), Expect = 5.6
Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 8/125 (6%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
DL R + ++ + ++ L L N +L+ +
Sbjct: 28 DLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV 87
Query: 72 -NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEK------LVKMQK 123
+L+ LNLS N+ + + LE L L+ N + + + + + K
Sbjct: 88 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPK 147
Query: 124 LTVLD 128
L LD
Sbjct: 148 LLRLD 152
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 36.2 bits (82), Expect = 0.001
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 13 LSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFN 72
L + + N + + N + L NL L + ++NK+ I +
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLAS 193
Query: 73 FGHLRELNLSSNKFQQIPKCIFHLDNLEILILNN 106
+L E++L +N+ + + + NL I+ L N
Sbjct: 194 LPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTN 226
Score = 33.5 bits (75), Expect = 0.009
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 41 IQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLE 100
I + PD L + + + + + + + L+ I + +L+NL
Sbjct: 9 INVIFPDP-ALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-VQYLNNLI 66
Query: 101 ILILNNNDIEEINQPEKLVKMQ 122
L L +N I ++ + L K+
Sbjct: 67 GLELKDNQITDLAPLKNLTKIT 88
Score = 33.5 bits (75), Expect = 0.010
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
N L L NK I + L NL + L NN I ++ L L ++ L+N
Sbjct: 171 NLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDV---SPLANTSNLFIVTLTN 226
Score = 33.1 bits (74), Expect = 0.014
Identities = 11/68 (16%), Positives = 16/68 (23%), Gaps = 1/68 (1%)
Query: 93 IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNL 152
IF L I + + +T L + I + L L L
Sbjct: 12 IFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLEL 70
Query: 153 VGNCFKYP 160
N
Sbjct: 71 KDNQITDL 78
Score = 31.5 bits (70), Expect = 0.043
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 92 CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLN 151
+ +L L L ++N I +I L + L + L NN I + L L +
Sbjct: 168 PLANLSKLTTLKADDNKISDI---SPLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVT 223
Query: 152 L 152
L
Sbjct: 224 L 224
Score = 26.9 bits (58), Expect = 1.3
Identities = 7/59 (11%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 34 LDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKC 92
+ + + + +L + ++ + TI+ +L L L N+ +
Sbjct: 24 IAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPL 81
Score = 26.9 bits (58), Expect = 1.4
Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 27 DITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGH 75
D+ I L + + + L +L+ + L++N++ + N
Sbjct: 39 DLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLAPLKNLTK 86
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 35.9 bits (81), Expect = 0.002
Identities = 18/131 (13%), Positives = 46/131 (35%), Gaps = 4/131 (3%)
Query: 32 RELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLET-IDIDFNFGHLRELNLSSNKF--QQ 88
+ LDL+ + L + ++ + ++ + F+ ++ ++LS++
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62
Query: 89 IPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLH 148
+ + L+ L L + + L K L L+LS + L
Sbjct: 63 LHGILSQCSKLQNLSLEGLRLSD-PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121
Query: 149 HLNLVGNCFKY 159
L+ + + +
Sbjct: 122 RLDELNLSWCF 132
Score = 28.9 bits (63), Expect = 0.35
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQN--LPPDLLNLRHLVYMNLENNKLETIDI 69
+ + ++ F ++ +DLS+++I+ L L L ++LE +L +
Sbjct: 29 RCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV 88
Query: 70 DF--NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNN 107
+ +L LNLS L + L N
Sbjct: 89 NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 128
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 36.1 bits (81), Expect = 0.002
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 98 NLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNI-----RKIPYELGLAQQLHHLNL 152
+++ L + ++ + E L +Q+ V+ L + + + I L + L LNL
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 153 VGNCF 157
N
Sbjct: 63 RSNEL 67
Score = 33.0 bits (73), Expect = 0.014
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 11/73 (15%)
Query: 72 NFGHLRELNLSSNKF-----QQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQK--- 123
LR L L+ + + +L L L+NN + + +LV+ +
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG-ILQLVESVRQPG 425
Query: 124 --LTVLDLSNNNI 134
L L L +
Sbjct: 426 CLLEQLVLYDIYW 438
Score = 32.3 bits (71), Expect = 0.027
Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 23/117 (19%)
Query: 30 SIRELDLSHNLIQNLPPDLL--NLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQ 87
I+ LD+ + + L L+ + L++ L+ + +
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-----------------GLTEARCK 45
Query: 88 QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQ----KLTVLDLSNNNIRKIPYE 140
I + L L L +N++ ++ L +Q K+ L L N +
Sbjct: 46 DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 102
Score = 31.5 bits (69), Expect = 0.046
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 9/85 (10%)
Query: 92 CIFHLDNLEILILNNNDIEEI---NQPEKLVKMQKLTVLDLSNNNIR-KIPYELGLAQQ- 146
L +L L + D+ + + L+ L LDLSNN + +L + +
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423
Query: 147 ----LHHLNLVGNCFKYPRQDILQK 167
L L L + +D LQ
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQA 448
Score = 30.7 bits (67), Expect = 0.10
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 17/96 (17%)
Query: 29 TSIRELDLSHNLI-----QNLPPDLLNLRHLVYMNLENNKLETIDIDF-------NFGHL 76
+ +R L L+ + +L LL L ++L NN L I L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 77 RELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEI 112
+L L + + + D L+ L + + I
Sbjct: 429 EQLVLYDIYWSEEME-----DRLQALEKDKPSLRVI 459
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 35.3 bits (79), Expect = 0.003
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 19 HVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNK 63
+ N + LD+S I +LP L NL+ L + N K
Sbjct: 191 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 34.5 bits (77), Expect = 0.005
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 71 FNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDL 129
+N +++P +F IL ++ I + L ++KL
Sbjct: 174 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL-PSYGLENLKKLRAR-- 230
Query: 130 SNNNIRKIP 138
S N++K+P
Sbjct: 231 STYNLKKLP 239
Score = 31.4 bits (69), Expect = 0.039
Identities = 5/49 (10%), Positives = 15/49 (30%), Gaps = 3/49 (6%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNL 59
+++ + S L + EL ++ + L + +
Sbjct: 14 LCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI 60
Score = 30.3 bits (66), Expect = 0.10
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 79 LNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIP 138
L L+ N Q+I C F+ L+ L L++N+ E + +LD+S I +P
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217
Query: 139 YE-LGLAQQLHHLNL 152
L ++L +
Sbjct: 218 SYGLENLKKLRARST 232
Score = 27.2 bits (58), Expect = 1.2
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 58 NLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFH 95
+ +K+ I D + EL K + I K F
Sbjct: 14 LCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFS 50
Score = 24.9 bits (52), Expect = 6.0
Identities = 3/15 (20%), Positives = 4/15 (26%)
Query: 124 LTVLDLSNNNIRKIP 138
L +R I
Sbjct: 31 AIELRFVLTKLRVIQ 45
Score = 24.5 bits (51), Expect = 9.2
Identities = 6/52 (11%), Positives = 14/52 (26%), Gaps = 2/52 (3%)
Query: 125 TVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYL 176
V + + +IP L + L V + ++ +
Sbjct: 11 RVFLCQESKVTEIP--SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI 60
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 35.2 bits (79), Expect = 0.003
Identities = 9/70 (12%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 75 HLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQ---PEKLVKMQKLTVLDLSN 131
L+ +++ + + + D+++ ++L+ N I E + + L + + S+
Sbjct: 9 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68
Query: 132 NNIRKIPYEL 141
++ E+
Sbjct: 69 IFTGRVKDEI 78
Score = 31.4 bits (69), Expect = 0.056
Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 7/80 (8%)
Query: 98 NLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNI-----RKIPYELGLAQQLHHLNL 152
+L++ + D + + L++ + + LS N I R + + + L
Sbjct: 9 SLKLDAITTEDEKSV--FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66
Query: 153 VGNCFKYPRQDILQKGTPFL 172
+ +I + L
Sbjct: 67 SDIFTGRVKDEIPEALRLLL 86
Score = 29.1 bits (63), Expect = 0.28
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 12 DLSYNRLHVVNSKLFDITSIRELDLSHNLI-----QNLPPDLLNLRHLVYMNLENNKLET 66
++ V + L + S++E+ LS N I + L ++ + + L +
Sbjct: 14 AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGR 73
Query: 67 I 67
+
Sbjct: 74 V 74
Score = 29.1 bits (63), Expect = 0.34
Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Query: 48 LLNLRHLVYMNLENNKLETIDIDF-------NFGHLRELNLSSNKFQQIPKCIFHLDNLE 100
L L + L+ N++E + L L L+ N+F + + + +
Sbjct: 269 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV- 327
Query: 101 ILILNNNDIEEINQPEK 117
+++E++ E+
Sbjct: 328 FSTRGRGELDELDDMEE 344
Score = 28.3 bits (61), Expect = 0.50
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 71 FNFGHLRELNLSSNKFQQIPKCIFHLDN--LEILILNNNDIEEIN----QPEKLVKMQKL 124
L + LS+ + L+N L+ L L N+IE + KM L
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304
Query: 125 TVLDLSNNNIRKIPYELGLAQQL 147
L+L+ N + + +++
Sbjct: 305 LFLELNGNRFSEEDDVVDEIREV 327
Score = 26.0 bits (55), Expect = 3.4
Identities = 14/78 (17%), Positives = 19/78 (24%), Gaps = 6/78 (7%)
Query: 87 QQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR-KIPYELGLA- 144
L +L+ + ++ L L L N I L
Sbjct: 238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 297
Query: 145 ----QQLHHLNLVGNCFK 158
L L L GN F
Sbjct: 298 DEKMPDLLFLELNGNRFS 315
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 33.1 bits (74), Expect = 0.012
Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 1/139 (0%)
Query: 14 SYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNF 73
+ +++ L + + + L LS N I+ + L + +L ++L N ++ I+
Sbjct: 33 MIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGMENLRILSLGRNLIKKIENLDAV 91
Query: 74 GHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNN 133
E S I L NL +L ++NN I + +KL + KL L L+ N
Sbjct: 92 ADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151
Query: 134 IRKIPYELGLAQQLHHLNL 152
+ E + +
Sbjct: 152 LYNDYKENNATSEYRIEVV 170
Score = 26.6 bits (57), Expect = 1.8
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 102 LILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPR 161
L IE++ L ++ L LS NNI KI L + L L+L N K
Sbjct: 30 LHGMIPPIEKM--DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIE 86
Query: 162 Q 162
Sbjct: 87 N 87
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 32.7 bits (73), Expect = 0.013
Identities = 32/166 (19%), Positives = 57/166 (34%), Gaps = 42/166 (25%)
Query: 27 DITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKF 86
++ SI ++ +++ I+++ + L ++ + L NKL I N +L L L NK
Sbjct: 44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKV 102
Query: 87 QQIPKC----------------------------------------IFHLDNLEILILNN 106
+ + I L L L +
Sbjct: 103 KDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLS 162
Query: 107 NDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNL 152
+ +I+ L + KL L LS N+I + L + L L L
Sbjct: 163 LEDNQISDIVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLEL 207
Score = 32.7 bits (73), Expect = 0.016
Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 41 IQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLE 100
I+ + D + NL+ + + ++ +++ + + I +L N+
Sbjct: 14 IKQIFSDD-AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVT 71
Query: 101 ILILNNNDIEEINQPEKLVKMQ 122
L LN N + +I L +
Sbjct: 72 KLFLNGNKLTDIKPLANLKNLG 93
Score = 31.9 bits (71), Expect = 0.029
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 93 IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNL 152
IF D I +N + + ++ + + +N++I+ + + + L L
Sbjct: 17 IFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFL 75
Query: 153 VGNCF 157
GN
Sbjct: 76 NGNKL 80
Score = 31.1 bits (69), Expect = 0.051
Identities = 9/39 (23%), Positives = 13/39 (33%)
Query: 45 PPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSS 83
L L L + L N + + +L L L S
Sbjct: 171 IVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 209
Score = 29.2 bits (64), Expect = 0.22
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 93 IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
+ L L+ L L+ N I ++ L ++ L VL+L +
Sbjct: 174 LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFS 209
Score = 26.1 bits (56), Expect = 2.5
Identities = 7/53 (13%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 34 LDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKF 86
+L + + L + + N+ ++++ ++ +L L+ NK
Sbjct: 29 DNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL 80
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 30.0 bits (66), Expect = 0.11
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 1/65 (1%)
Query: 93 IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNL 152
IF L + + + ++T L I+ I + L +N
Sbjct: 11 IFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINF 69
Query: 153 VGNCF 157
N
Sbjct: 70 SNNQL 74
Score = 27.7 bits (60), Expect = 0.62
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 50 NLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNN 107
L + L + + + L + I + +L+NL + +NN
Sbjct: 16 ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNN 72
Score = 26.9 bits (58), Expect = 1.1
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 45 PPDLLNLRHLVYMNLENNKLETIDIDFNFGHLREL 79
L NL L +++ +NK+ I + +L L
Sbjct: 165 LKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 199
Score = 26.6 bits (57), Expect = 1.6
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 111 EINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHL 150
++ + L + L LD+S+N + I L L L
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESL 199
Score = 25.8 bits (55), Expect = 2.7
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 90 PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKL 124
K + +L LE L +++N + +I+ KL ++ L
Sbjct: 165 LKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 199
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 25.9 bits (55), Expect = 2.4
Identities = 8/58 (13%), Positives = 19/58 (32%)
Query: 76 LRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNN 133
L + + + +NL L + N + + L + +L L + +
Sbjct: 10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67
Score = 25.1 bits (53), Expect = 4.0
Identities = 5/34 (14%), Positives = 11/34 (32%)
Query: 124 LTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCF 157
+ L + + + L A+ L L +
Sbjct: 10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQH 43
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 25.2 bits (53), Expect = 4.7
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 125 TVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFL 172
T +D + +++IP + L L N D L P L
Sbjct: 11 TTVDCTGRGLKEIP--RDIPLHTTELLLNDNELGRISSDGLFGRLPHL 56
>d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 389
Score = 25.3 bits (54), Expect = 5.9
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 71 FNFGHLRELNLSSNKFQQIPKCIFHLD 97
F + L +L S ++ CI H+D
Sbjct: 4 FTWKELIQLGSPSKAYESSLACIAHID 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.396
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 670,563
Number of extensions: 31206
Number of successful extensions: 339
Number of sequences better than 10.0: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 122
Length of query: 183
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,309,196
Effective search space: 134847188
Effective search space used: 134847188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.8 bits)