BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3785
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 90 INEAVYDLPHLYKFNVSNNMI-AKISDNIGNLTSLLVLNISNNKIES-LPENIGYMKSLT 147
I + + +P+L+ N+ +N I I D +G+L L +L++S+NK++ +P+ + + LT
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 148 HIDASHNTISYVPWKLFSKFHQNRSSRF 175
ID S+N +S P +F ++F
Sbjct: 705 EIDLSNNNLSG-PIPEMGQFETFPPAKF 731
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 103 FNVSNNMIAK-ISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTI 156
++S NM++ I IG++ L +LN+ +N I S+P+ +G ++ L +D S N +
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 90 INEAVYDLPHLYKFNVSNNMI-AKISDNIGNLTSLLVLNISNNKIES-LPENIGYMKSLT 147
I + + +P+L+ N+ +N I I D +G+L L +L++S+NK++ +P+ + + LT
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 148 HIDASHNTISYVPWKLFSKFHQNRSSRF 175
ID S+N +S P +F ++F
Sbjct: 708 EIDLSNNNLSG-PIPEMGQFETFPPAKF 734
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 103 FNVSNNMIAK-ISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTI 156
++S NM++ I IG++ L +LN+ +N I S+P+ +G ++ L +D S N +
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 93 AVYD-LPHLYKFNVSNNMIAKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHI 149
V+D L +L + + N + + D + LT+L LN+++N+++SLP+ + + +LT +
Sbjct: 103 GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162
Query: 150 DASHNTISYVPWKLFSKFHQNRSSRF 175
D S+N + +P +F K Q + R
Sbjct: 163 DLSYNQLQSLPEGVFDKLTQLKDLRL 188
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%)
Query: 90 INEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHI 149
I+ ++ L + ++ N + ++ I NL++L VL++S+N++ SLP +G L +
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298
Query: 150 DASHNTISYVPWKL 163
N ++ +PW+
Sbjct: 299 YFFDNMVTTLPWEF 312
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%)
Query: 89 MINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTH 148
M ++ YD + ++SN I IS NI L L ++ N + LP I + +L
Sbjct: 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRV 274
Query: 149 IDASHNTISYVPWKLFSKFH 168
+D SHN ++ +P +L S F
Sbjct: 275 LDLSHNRLTSLPAELGSCFQ 294
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 23/94 (24%)
Query: 54 LKVLNLQYNNLKGLPDEIRHXXXXXXXXXXXXXXEMINEAVYDLPHLYKFNVSNNMIAKI 113
L+VL+L +N L LP E+ + + L + Y F+ NM+ +
Sbjct: 272 LRVLDLSHNRLTSLPAELG--------------------SCFQLKYFYFFD---NMVTTL 308
Query: 114 SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLT 147
GNL +L L + N +E I KS+T
Sbjct: 309 PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT 342
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.1 bits (74), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 98 PHLYKFNVSNNMIA-KISDNIGNLTSLLVLNISNNKIESL---PENIGYMKSLTHIDASH 153
P L+ + SNN++ + +N G+LT L L + N+++ L E MKSL +D S
Sbjct: 325 PFLH-LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383
Query: 154 NTISY 158
N++SY
Sbjct: 384 NSVSY 388
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 125 VLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKF 167
VL++ +NKI+S+P+ + +++L ++ + N + VP +F +
Sbjct: 425 VLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRL 467
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 98 PHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENI 140
P + ++ +N I I + L +L LN+++N+++S+P+ I
Sbjct: 421 PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGI 463
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 26/122 (21%)
Query: 57 LNLQYNNLKGLPDEIRHXXXXXXXXXXXXXXEMINEAVYD-LPHLYKFNVSNNMIAKISD 115
L+L+ N+LK LP+ V+D L L + + N + + +
Sbjct: 33 LDLETNSLKSLPN-----------------------GVFDELTSLTQLYLGGNKLQSLPN 69
Query: 116 NIGN-LTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKFHQNRSS 173
+ N LTSL LN+S N+++SLP + + L + + N + +P +F K Q +
Sbjct: 70 GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL 129
Query: 174 RF 175
R
Sbjct: 130 RL 131
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 29/43 (67%)
Query: 125 VLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKF 167
VL++ NN+I S+P+++ ++++L ++ + N + VP +F +
Sbjct: 454 VLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRL 496
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 49 EPVLKLKVLNLQYNNLKGLPDEIRHXXXXXXXXXXXXXXEMINEAVYDLPHLYKFNVSNN 108
E + LK LNL N+K +P+ E+ + + L L K V N+
Sbjct: 193 EGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252
Query: 109 MIAKISDN-IGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
++ I N L SL+ LN+++N + SLP ++ ++ L + HN PW
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN-----PW 302
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 46/113 (40%), Gaps = 4/113 (3%)
Query: 54 LKVLNLQYNNLKGLPDEIRHXXXXXXXXXXXXXXEMINEAVYDLPHLYKFNVSNNMIAKI 113
L+V+ LK +P EI E+ + L HLY + NN I+KI
Sbjct: 35 LRVVQCSDLGLKAVPKEIS-PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93
Query: 114 SDN-IGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFS 165
+ L L L IS N + +P N+ SL + N I VP +FS
Sbjct: 94 HEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFS 144
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 93 AVYDLPHLYKF-NVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDA 151
A+ DLP L ++ VSNN + K+ + + N + L ++++ NN ++ LP+ SL I A
Sbjct: 125 ALSDLPPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPD---LPPSLEFIAA 180
Query: 152 SHNTISYVP 160
+N + +P
Sbjct: 181 GNNQLEELP 189
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 98 PHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
P+LY N S+N I + D +L LN+SNNK+ LP L + AS N ++
Sbjct: 297 PNLYYLNASSNEIRSLCDLPPSLEE---LNVSNNKLIELP---ALPPRLERLIASFNHLA 350
Query: 158 YVP 160
VP
Sbjct: 351 EVP 353
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 22/82 (26%)
Query: 98 PHLYKFNVSNNMIAKISDNIGNLTSLLV-----------------LNISNNKIESLPE-- 138
PHL S N + ++ + +L SLLV L +SNN++E LPE
Sbjct: 91 PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQ 150
Query: 139 NIGYMKSLTHIDASHNTISYVP 160
N ++K ID +N++ +P
Sbjct: 151 NSSFLKI---IDVDNNSLKKLP 169
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 94 VYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASH 153
+ +LP L NN++ + D SL LN+ +N + LPE +SLT +D S
Sbjct: 233 LQNLPFLTTIYADNNLLKTLPDLPP---SLEALNVRDNYLTDLPE---LPQSLTFLDVSE 286
Query: 154 NTIS 157
N S
Sbjct: 287 NIFS 290
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 54 LKVLNLQYNNLKGLPDEIRHXXXXXXXXXXXXXXEMINEAVYDLPHLYKFNVSNNMIAKI 113
LK++++ N+LK LPD E + E + +LP L NN + K+
Sbjct: 155 LKIIDVDNNSLKKLPD---LPPSLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKL 210
Query: 114 SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
D +L S++ NN +E LPE + + LT I A +N + +P
Sbjct: 211 PDLPLSLESIVA---GNNILEELPE-LQNLPFLTTIYADNNLLKTLP 253
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 117 IGNLTSLLVLNISNNKIES--LPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
IG+L +L LN+++N I+S LPE + +L H+D S N I + HQ
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 97 LPHLYKFNVSNNMIA--KISDNIGNLTSLLVLNISNNKIESL 136
L L + NV++N+I K+ + NLT+L L++S+NKI+S+
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 93 AVYDLPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESLPEN--IGYMKSLTHI 149
A + L HL K N+S N + I S NL L VL++S N I +L + +G + +L +
Sbjct: 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG-LPNLKEL 376
Query: 150 DASHNTISYVPWKLFSKF 167
N + VP +F +
Sbjct: 377 ALDTNQLKSVPDGIFDRL 394
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 117 IGNLTSLLVLNISNNKIES--LPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
IG+L +L LN+++N I+S LPE + +L H+D S N I + HQ
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 198
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 97 LPHLYKFNVSNNMIA--KISDNIGNLTSLLVLNISNNKIESL 136
L L + NV++N+I K+ + NLT+L L++S+NKI+S+
Sbjct: 147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 117 IGNLTSLLVLNISNNKIES--LPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
IG+L +L LN+++N I+S LPE + +L H+D S N I + HQ
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 91 NEAVYDLPHLYKFNVSNNMIA--KISDNIGNLTSLLVLNISNNKIESL 136
N + L L + NV++N+I K+ + NLT+L L++S+NKI+S+
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 97 LPHLYKFNVSNNMIAKISDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDA---S 152
L L N+ N + +S + +LT L L ++NN++ SLP +G LT +D
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP--LGVFDHLTQLDKLYLG 115
Query: 153 HNTISYVPWKLFSKFHQNRSSRF 175
N + +P +F + + + R
Sbjct: 116 GNQLKSLPSGVFDRLTKLKELRL 138
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 117 IGNLTSLLVLNISNNKIES--LPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
IG+L +L LN+++N I+S LPE + +L H+D S N I + HQ
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 175
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 91 NEAVYDLPHLYKFNVSNNMIA--KISDNIGNLTSLLVLNISNNKIESL 136
N + L L + NV++N+I K+ + NLT+L L++S+NKI+S+
Sbjct: 118 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 117 IGNLTSLLVLNISNNKIES--LPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
IG+L +L LN+++N I+S LPE + +L H+D S N I + HQ
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 176
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 91 NEAVYDLPHLYKFNVSNNMIA--KISDNIGNLTSLLVLNISNNKIESL 136
N + L L + NV++N+I K+ + NLT+L L++S+NKI+S+
Sbjct: 119 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 117 IGNLTSLLVLNISNNKIES--LPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
IG+L +L LN+++N I+S LPE + +L H+D S N I + HQ
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 91 NEAVYDLPHLYKFNVSNNMIA--KISDNIGNLTSLLVLNISNNKIESL 136
N + L L + NV++N+I K+ + NLT+L L++S+NKI+S+
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 97 LPHLYKFNVSNNMIAKISDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDA---S 152
L L N+ N + +S + +LT L L ++NN++ SLP +G LT +D
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP--LGVFDHLTQLDKLYLG 115
Query: 153 HNTISYVPWKLFSKFHQNRSSRF 175
N + +P +F + + + R
Sbjct: 116 GNQLKSLPSGVFDRLTKLKELRL 138
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 117 IGNLTSLLVLNISNNKIES--LPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
IG+L +L LN+++N I+S LPE + +L H+D S N I + HQ
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 176
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 91 NEAVYDLPHLYKFNVSNNMIA--KISDNIGNLTSLLVLNISNNKIESL 136
N + L L + NV++N+I K+ + NLT+L L++S+NKI+S+
Sbjct: 119 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 117 IGNLTSLLVLNISNNKIES--LPENIGYMKSLTHIDASHNTISYV 159
IG+L +L LN+++N I+S LPE + +L H+D S N I +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 91 NEAVYDLPHLYKFNVSNNMIA--KISDNIGNLTSLLVLNISNNKIESL 136
N + L L + NV++N+I K+ + NLT+L L++S+NKI+S+
Sbjct: 118 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 99 HLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158
L + N+ + K+ + G L L L++S+N+++SLP + +LT +D S N ++
Sbjct: 56 RLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 159 VP 160
+P
Sbjct: 115 LP 116
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 99 HLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158
L + N+ + K+ + G L L L++S+N+++SLP + +LT +D S N ++
Sbjct: 56 RLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 159 VP 160
+P
Sbjct: 115 LP 116
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 99 HLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158
L + N+ + K+ + G L L L++S+N+++SLP + +LT +D S N ++
Sbjct: 56 RLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 159 VP 160
+P
Sbjct: 115 LP 116
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 99 HLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158
L + N+ + K+ + G L L L++S+N+++SLP + +LT +D S N ++
Sbjct: 56 RLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 159 VP 160
+P
Sbjct: 115 LP 116
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 90 INEAVYDLPHLYKFNVS--NNMIAKISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSL 146
I ++ +LP+L + NN++ I I LT L L I++ + ++P+ + +K+L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 147 THIDASHNTIS 157
+D S+N +S
Sbjct: 128 VTLDFSYNALS 138
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 99 HLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158
L + N+ + K+ + G L L L++S+N+++SLP + +LT +D S N ++
Sbjct: 56 RLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 159 VP 160
+P
Sbjct: 115 LP 116
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 99 HLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158
L + N+ + K+ + G L L L++S+N+++SLP + +LT +D S N ++
Sbjct: 56 RLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 159 VP 160
+P
Sbjct: 115 LP 116
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 99 HLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158
L + N+ + K+ + G L L L++S+N+++SLP + +LT +D S N ++
Sbjct: 56 RLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 159 VP 160
+P
Sbjct: 115 LP 116
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 99 HLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158
L + N+ + K+ + G L L L++S+N+++SLP + +LT +D S N ++
Sbjct: 56 RLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 159 VP 160
+P
Sbjct: 115 LP 116
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 99 HLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158
L + N+ + K+ + G L L L++S+N+++SLP + +LT +D S N ++
Sbjct: 56 RLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 159 VP 160
+P
Sbjct: 115 LP 116
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 99 HLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158
L + N+ + K+ + G L L L++S+N+++SLP + +LT +D S N ++
Sbjct: 57 RLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 115
Query: 159 VP 160
+P
Sbjct: 116 LP 117
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 22/109 (20%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHXXXXXXXXXXXXXXEMINEAVYDLPHLYKFNVSNNMIAK 112
K++++ + YNNLK P E + + L LY N + K
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKX---------------KKLGXLECLY-----NQLEGK 345
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVP 160
+ G+ L LN++ N+I +P N G+ + + ++ +HN + Y+P
Sbjct: 346 LP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIP 393
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 49 EPVLKLKVLNLQYNNLKGLPDEIRHXX--XXXXXXXXXXXXEMINEAVYDLPHLYKFNVS 106
E + LKVLNL YN + + DE + E+ + Y LP + ++
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346
Query: 107 NNMIAKISDNIGN-LTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
N IA I D L L L++ +N + + I ++ S+ I S N + +P
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTT----IHFIPSIPDIFLSGNKLVTLP 397
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 29.6 bits (65), Expect = 1.0, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 96 DLPHLYKF-NVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN 154
+LP L ++ N NN + + + TSL VL++ NN++ LPE +SL +D S N
Sbjct: 137 ELPALLEYINADNNQLTXLPELP---TSLEVLSVRNNQLTFLPE---LPESLEALDVSTN 190
Query: 155 TISYVPWKLFSKFHQNRSSRF 175
+ +P H + F
Sbjct: 191 LLESLPAVPVRNHHSEETEIF 211
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 117 IGNLTSLLVLNISNNKIES--LPENIGYMKSLTHIDASHNTISYV 159
IG L +L LN+++N I S LP + +L H+D S+N I +
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 163
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 117 IGNLTSLLVLNISNNKIES--LPENIGYMKSLTHIDASHNTISYV 159
IG L +L LN+++N I S LP + +L H+D S+N I +
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 24/116 (20%)
Query: 54 LKVLNLQYNNLKGLPDEIRHXXXXXXXXXXXXXXEMINEAVYDLPHLYKF-NVSNNMIAK 112
LK L L N L+ LPD + + + +L +LY + N ++
Sbjct: 111 LKELVLVENQLQSLPDGVF-------------------DKLTNLTYLYLYHNQLQSLPKG 151
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKF 167
+ D + NLT L ++ NN+++SLPE + + L + + N + VP +F +
Sbjct: 152 VFDKLTNLTRL---DLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRL 204
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 98 PHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENI 140
P L + +S N + + D L LLVL IS N+++S+P+ I
Sbjct: 451 PQLKELYISRNKLMTLPD-ASLLPMLLVLKISRNQLKSVPDGI 492
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 97 LPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENI 140
LP L + +S N + + D LLV+ IS N+++S+P+ I
Sbjct: 450 LPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGI 492
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 26/123 (21%)
Query: 49 EPVLKLKVLNLQYNNLKGLPDEIRHXXXXXXXXXXXXXXEMINEAVYDLPHLYKFNVSNN 108
E ++ L+ LNL NLK +P+ + L L + +S N
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPN------------------------LTALVRLEELELSGN 188
Query: 109 MIAKISD-NIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSK 166
+ I + LTSL L + + ++ ++ N +KSL ++ SHN + +P LF+
Sbjct: 189 RLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTP 248
Query: 167 FHQ 169
H+
Sbjct: 249 LHR 251
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 93 AVYD-LPHLYKFNVSNNMIAKISDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHID 150
V+D L L ++ N + + + L L L + NK+ LP I + LTH+
Sbjct: 82 GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLA 141
Query: 151 ASHNTISYVPWKLFSKF 167
N + +P F +
Sbjct: 142 LDQNQLKSIPHGAFDRL 158
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 26/123 (21%)
Query: 49 EPVLKLKVLNLQYNNLKGLPDEIRHXXXXXXXXXXXXXXEMINEAVYDLPHLYKFNVSNN 108
E ++ L+ LNL NLK +P+ + L L + +S N
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPN------------------------LTALVRLEELELSGN 188
Query: 109 MIAKI-SDNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSK 166
+ I + LTSL L + + ++ ++ N +KSL ++ SHN + +P LF+
Sbjct: 189 RLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTP 248
Query: 167 FHQ 169
H+
Sbjct: 249 LHR 251
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 120 LTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
LT L L++S N+I+SLP+ + + LT + N + +P +F K Q
Sbjct: 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQ 101
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Query: 93 AVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHID-- 150
A+ L L + N S+N + + + NLT+L L+IS+NK+ +I + LT+++
Sbjct: 146 ALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKV----SDISVLAKLTNLESL 200
Query: 151 -ASHNTISYV-PWKLFSKFHQ 169
A++N IS + P + + +
Sbjct: 201 IATNNQISDITPLGILTNLDE 221
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 97 LPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENI 140
LP L + +S N + + D LLV+ I++N+++S+P+ I
Sbjct: 476 LPRLQELYISRNKLKTLPDA-SLFPVLLVMKIASNQLKSVPDGI 518
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 93 AVYDLPHLYKFNVSNNMIAKISDNI---GN-LTSLLVLNISNNKIESLP 137
A D+ L K +S N I++ + GN L L++L++S+NK++ LP
Sbjct: 131 AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 37/119 (31%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHXXXXXXXXXXXXXXEMINEAVYD-LPHLYKFNVSNNMIA 111
KL L+L YN L+ LP + V+D L L + + NN +
Sbjct: 134 KLTYLSLGYNELQSLP-----------------------KGVFDKLTSLKELRLYNNQLK 170
Query: 112 KISDN-IGNLTSLLVLNISNNKIESLPENIGYMKSLTHI----------DASHNTISYV 159
++ + LT L L + NN+++ +PE G SL + D + N I Y+
Sbjct: 171 RVPEGAFDKLTELKTLKLDNNQLKRVPE--GAFDSLEKLKMLQLQENPWDCTCNGIIYM 227
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 106 SNNMIAKISDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLF 164
SN + + S LT L +L +++NK+++LP I +K+L + + N + +P +F
Sbjct: 46 SNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVF 105
Query: 165 SKF 167
+
Sbjct: 106 DQL 108
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 99 HLYKFNVSNNMIAKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTI 156
HLY N I K+ + +LT L LN++ N++ +LP + + LTH+ N +
Sbjct: 46 HLYI-----NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQL 100
Query: 157 SYVPWKLF 164
+P +F
Sbjct: 101 KSIPMGVF 108
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 91 NEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHID 150
N ++ + PHL + +++NN + K+ + + + V+ + NN I ++ N
Sbjct: 233 NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 292
Query: 151 ASHNTISYVPWKLFS---KFHQNRSSRFGCALI 180
AS++ +S LFS ++ + + S F C +
Sbjct: 293 ASYSGVS-----LFSNPVQYWEIQPSTFRCVYV 320
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 91 NEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHID 150
N ++ + PHL + +++NN + K+ + + + V+ + NN I ++ N
Sbjct: 233 NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 292
Query: 151 ASHNTISYVPWKLFS---KFHQNRSSRFGCALI 180
AS++ +S LFS ++ + + S F C +
Sbjct: 293 ASYSGVS-----LFSNPVQYWEIQPSTFRCVYV 320
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,129,058
Number of Sequences: 62578
Number of extensions: 132899
Number of successful extensions: 476
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 154
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)