Query psy3785
Match_columns 184
No_of_seqs 121 out of 1578
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 17:20:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3785.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3785hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0617|consensus 99.8 1.4E-20 3.1E-25 129.8 -4.0 150 14-165 43-194 (264)
2 PLN00113 leucine-rich repeat r 99.7 1E-16 2.2E-21 140.1 10.7 136 22-158 159-298 (968)
3 PLN00113 leucine-rich repeat r 99.7 1.9E-16 4.1E-21 138.5 11.6 157 18-176 179-340 (968)
4 KOG0617|consensus 99.6 5.8E-18 1.3E-22 117.0 -2.6 153 23-178 29-183 (264)
5 KOG4194|consensus 99.6 6.2E-17 1.3E-21 129.6 0.6 142 25-167 291-439 (873)
6 KOG0444|consensus 99.6 1.2E-16 2.6E-21 129.2 2.2 159 23-181 3-163 (1255)
7 KOG0444|consensus 99.6 1.3E-16 2.9E-21 129.0 1.1 165 14-179 65-256 (1255)
8 KOG4194|consensus 99.5 3.2E-15 6.8E-20 120.0 3.2 157 23-180 169-353 (873)
9 KOG0472|consensus 99.5 2E-16 4.4E-21 121.8 -5.3 157 17-178 150-307 (565)
10 KOG0472|consensus 99.5 4.8E-15 1E-19 114.3 -1.7 144 16-162 400-545 (565)
11 PF14580 LRR_9: Leucine-rich r 99.4 1.2E-12 2.6E-17 92.3 5.4 123 25-151 17-147 (175)
12 PF14580 LRR_9: Leucine-rich r 99.4 6.3E-13 1.4E-17 93.8 3.9 126 47-174 14-146 (175)
13 PRK15370 E3 ubiquitin-protein 99.3 2.2E-12 4.8E-17 109.2 7.4 127 28-164 242-387 (754)
14 PRK15370 E3 ubiquitin-protein 99.3 5E-12 1.1E-16 107.1 8.1 148 16-178 190-356 (754)
15 KOG0618|consensus 99.3 6.2E-13 1.3E-17 111.5 0.8 144 25-171 357-503 (1081)
16 KOG0618|consensus 99.3 1.2E-13 2.5E-18 115.7 -3.6 82 96-179 381-463 (1081)
17 cd00116 LRR_RI Leucine-rich re 99.3 3.4E-12 7.4E-17 98.4 4.6 136 22-158 76-235 (319)
18 KOG4237|consensus 99.2 3.1E-12 6.8E-17 98.6 2.2 72 16-88 79-153 (498)
19 KOG0532|consensus 99.2 2.5E-13 5.4E-18 108.7 -4.2 142 16-161 87-228 (722)
20 KOG1259|consensus 99.2 1.4E-12 3E-17 97.8 -0.2 134 24-161 281-416 (490)
21 KOG0532|consensus 99.2 3E-12 6.5E-17 102.7 0.6 145 16-164 110-254 (722)
22 PRK15387 E3 ubiquitin-protein 99.2 1.2E-10 2.6E-15 98.7 9.1 131 15-161 212-359 (788)
23 COG4886 Leucine-rich repeat (L 99.2 1.8E-11 3.8E-16 97.5 3.3 146 28-177 141-286 (394)
24 PRK15387 E3 ubiquitin-protein 99.2 8.8E-11 1.9E-15 99.5 7.6 100 53-158 343-459 (788)
25 cd00116 LRR_RI Leucine-rich re 99.1 5.5E-11 1.2E-15 91.7 4.5 164 17-180 41-233 (319)
26 PLN03210 Resistant to P. syrin 99.1 5.2E-10 1.1E-14 99.7 10.7 90 15-107 622-713 (1153)
27 PLN03210 Resistant to P. syrin 99.1 7.7E-10 1.7E-14 98.7 11.7 85 76-161 779-887 (1153)
28 COG4886 Leucine-rich repeat (L 99.1 1.1E-10 2.4E-15 92.9 3.7 154 25-181 114-268 (394)
29 PLN03150 hypothetical protein; 99.0 2.9E-09 6.3E-14 89.4 9.7 105 53-157 419-528 (623)
30 PLN03150 hypothetical protein; 98.9 3.6E-09 7.7E-14 88.9 8.2 92 76-167 419-514 (623)
31 PF13855 LRR_8: Leucine rich r 98.9 1.7E-09 3.7E-14 63.2 4.0 58 52-109 1-60 (61)
32 KOG1259|consensus 98.9 2.6E-10 5.6E-15 85.8 -0.0 131 47-179 279-410 (490)
33 PF13855 LRR_8: Leucine rich r 98.8 5.6E-09 1.2E-13 61.0 3.7 57 76-132 2-60 (61)
34 KOG4579|consensus 98.8 7.5E-10 1.6E-14 74.2 -0.3 111 54-164 29-143 (177)
35 KOG1909|consensus 98.8 9.3E-10 2E-14 83.8 -0.1 164 16-179 81-281 (382)
36 KOG3207|consensus 98.7 3.9E-09 8.4E-14 82.7 2.1 135 24-158 143-315 (505)
37 KOG4237|consensus 98.7 2.3E-09 4.9E-14 83.1 -0.3 111 54-164 69-184 (498)
38 KOG1859|consensus 98.7 1.2E-09 2.5E-14 90.5 -2.5 125 53-180 165-291 (1096)
39 KOG3207|consensus 98.6 2.2E-09 4.9E-14 84.0 -1.8 162 19-180 113-313 (505)
40 KOG4579|consensus 98.6 1.4E-09 3.1E-14 72.9 -3.1 132 25-158 25-160 (177)
41 KOG1859|consensus 98.6 5E-10 1.1E-14 92.6 -7.2 130 27-161 164-296 (1096)
42 PF12799 LRR_4: Leucine Rich r 98.4 4.2E-07 9E-12 49.3 4.0 38 53-90 2-39 (44)
43 KOG0531|consensus 98.4 5.9E-08 1.3E-12 77.9 0.1 110 48-159 91-201 (414)
44 PF12799 LRR_4: Leucine Rich r 98.4 6.1E-07 1.3E-11 48.7 3.7 38 122-159 2-39 (44)
45 KOG3665|consensus 98.3 6.2E-07 1.3E-11 76.0 3.6 145 26-171 121-278 (699)
46 KOG1644|consensus 98.3 1.6E-06 3.5E-11 61.9 4.9 103 53-156 43-152 (233)
47 KOG4658|consensus 98.2 1.4E-06 2.9E-11 75.8 4.7 107 26-132 544-653 (889)
48 KOG4658|consensus 98.2 1.7E-06 3.7E-11 75.1 5.3 102 53-154 546-652 (889)
49 KOG1909|consensus 98.2 1E-06 2.2E-11 67.6 3.2 132 25-156 155-310 (382)
50 KOG0531|consensus 98.2 2.7E-07 5.7E-12 74.2 0.0 128 49-179 69-197 (414)
51 KOG1644|consensus 98.2 1.2E-06 2.7E-11 62.4 3.1 121 54-175 21-147 (233)
52 KOG2982|consensus 98.2 1.8E-07 4E-12 70.5 -1.3 155 25-179 69-260 (418)
53 KOG3665|consensus 98.0 2.9E-06 6.3E-11 72.0 2.7 125 25-150 146-281 (699)
54 KOG2120|consensus 97.9 2.8E-07 6E-12 69.6 -4.9 84 28-111 186-273 (419)
55 COG5238 RNA1 Ran GTPase-activa 97.9 8.9E-06 1.9E-10 60.9 2.8 149 16-165 81-264 (388)
56 PRK15386 type III secretion pr 97.8 7.3E-05 1.6E-09 59.5 7.3 115 25-154 50-187 (426)
57 PRK15386 type III secretion pr 97.7 9.8E-05 2.1E-09 58.8 6.4 112 48-170 48-182 (426)
58 KOG2739|consensus 97.7 1.9E-05 4.2E-10 58.4 2.1 108 44-152 35-151 (260)
59 KOG2120|consensus 97.6 5E-06 1.1E-10 62.9 -2.5 130 24-154 207-348 (419)
60 PF13306 LRR_5: Leucine rich r 97.4 0.0013 2.8E-08 43.8 7.6 118 47-170 7-128 (129)
61 KOG2982|consensus 97.4 0.00016 3.5E-09 55.0 3.0 62 97-158 198-263 (418)
62 KOG2739|consensus 97.3 0.00013 2.8E-09 54.1 2.2 102 72-174 40-149 (260)
63 KOG2123|consensus 97.3 2.2E-05 4.7E-10 59.0 -2.0 98 51-150 18-123 (388)
64 PF13306 LRR_5: Leucine rich r 96.7 0.014 3E-07 38.7 7.5 118 22-146 7-128 (129)
65 COG5238 RNA1 Ran GTPase-activa 96.6 0.0056 1.2E-07 46.3 5.3 113 47-159 87-229 (388)
66 KOG2123|consensus 96.5 0.00022 4.9E-09 53.7 -2.6 98 73-172 17-121 (388)
67 PF00560 LRR_1: Leucine Rich R 96.5 0.0015 3.3E-08 29.6 1.1 18 54-71 2-19 (22)
68 PF00560 LRR_1: Leucine Rich R 96.0 0.0043 9.2E-08 28.0 1.3 14 78-91 3-16 (22)
69 PF13504 LRR_7: Leucine rich r 95.6 0.0087 1.9E-07 25.2 1.4 12 77-88 3-14 (17)
70 smart00370 LRR Leucine-rich re 95.6 0.017 3.6E-07 27.1 2.5 22 144-165 2-23 (26)
71 smart00369 LRR_TYP Leucine-ric 95.6 0.017 3.6E-07 27.1 2.5 22 144-165 2-23 (26)
72 KOG0473|consensus 94.9 0.00039 8.4E-09 51.2 -6.5 86 71-156 38-123 (326)
73 smart00369 LRR_TYP Leucine-ric 94.4 0.043 9.4E-07 25.6 2.1 19 75-93 2-20 (26)
74 smart00370 LRR Leucine-rich re 94.4 0.043 9.4E-07 25.6 2.1 19 75-93 2-20 (26)
75 KOG0473|consensus 93.5 0.0012 2.6E-08 48.7 -6.3 87 48-134 38-124 (326)
76 KOG4308|consensus 92.1 0.003 6.6E-08 51.8 -6.6 140 19-158 107-276 (478)
77 KOG4308|consensus 91.6 0.0036 7.7E-08 51.4 -6.7 132 27-158 144-304 (478)
78 smart00364 LRR_BAC Leucine-ric 87.7 0.36 7.8E-06 22.7 1.2 17 53-69 3-19 (26)
79 KOG1947|consensus 87.6 0.25 5.5E-06 40.1 1.0 58 74-131 242-305 (482)
80 KOG1947|consensus 85.4 0.59 1.3E-05 38.0 2.1 108 50-157 186-308 (482)
81 KOG3864|consensus 82.9 0.26 5.6E-06 35.8 -0.9 80 52-131 101-186 (221)
82 PF13516 LRR_6: Leucine Rich r 81.2 0.78 1.7E-05 20.7 0.7 13 76-88 3-15 (24)
83 KOG3864|consensus 81.1 0.69 1.5E-05 33.6 0.8 77 76-152 102-184 (221)
84 smart00365 LRR_SD22 Leucine-ri 80.4 1.7 3.7E-05 20.4 1.7 16 144-159 2-17 (26)
85 smart00368 LRR_RI Leucine rich 73.3 3.5 7.6E-05 19.5 1.8 15 144-158 2-16 (28)
86 KOG4341|consensus 71.5 2.7 5.8E-05 34.1 1.7 34 121-154 401-436 (483)
87 KOG3763|consensus 71.2 2.7 5.9E-05 35.1 1.8 62 96-158 216-284 (585)
88 KOG3763|consensus 61.3 6.9 0.00015 32.9 2.3 35 74-108 217-254 (585)
89 KOG4341|consensus 60.1 9.8 0.00021 31.0 2.9 125 25-149 318-457 (483)
90 TIGR00864 PCC polycystin catio 31.9 34 0.00074 34.7 2.2 31 34-65 2-32 (2740)
91 smart00367 LRR_CC Leucine-rich 30.7 40 0.00086 15.2 1.4 11 121-131 2-12 (26)
92 TIGR00864 PCC polycystin catio 23.4 62 0.0013 33.0 2.3 31 58-88 1-32 (2740)
No 1
>KOG0617|consensus
Probab=99.75 E-value=1.4e-20 Score=129.81 Aligned_cols=150 Identities=22% Similarity=0.351 Sum_probs=135.9
Q ss_pred ccccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccc--cch
Q psy3785 14 ARLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLE--MIN 91 (184)
Q Consensus 14 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~--~~~ 91 (184)
+.+..+++.++.+.+|+.|++.+|++. .+|.++.++++|+.|.+.-|++..+|.+|+.++.|+.|++++|++. .+|
T Consensus 43 NKl~~vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lp 120 (264)
T KOG0617|consen 43 NKLTVVPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLP 120 (264)
T ss_pred CceeecCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCC
Confidence 344557788888999999999999887 7899999999999999999999999999999999999999999988 688
Q ss_pred hhhcCCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhh
Q psy3785 92 EAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFS 165 (184)
Q Consensus 92 ~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~ 165 (184)
..|+.|..|+.|.+++|.+..+|+..+.+.+|+.+.+.+|.+-++|.+++.++.|+.+.+.+|.++.+|.++..
T Consensus 121 gnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 121 GNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred cchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 88889999999999999999999999999999999999999999999999999999999999999999987664
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.70 E-value=1e-16 Score=140.08 Aligned_cols=136 Identities=24% Similarity=0.350 Sum_probs=59.1
Q ss_pred CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc-CchhhhCCCCCCEEEcccCccc-cchhhhcCCCC
Q psy3785 22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVYDLPH 99 (184)
Q Consensus 22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~ 99 (184)
.++.+++|+.|++++|.+.+ .+|..+.++++|+.|++++|.+.+ +|..+.++++|+.|++++|.++ .+|..+..+++
T Consensus 159 ~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 237 (968)
T PLN00113 159 DIGSFSSLKVLDLGGNVLVG-KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237 (968)
T ss_pred HHhcCCCCCEEECccCcccc-cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence 34444444444444444433 334444444444444444444443 3444444444444444444443 33444444444
Q ss_pred ceEEEccccccc-cchhhhcCCCCCCEEEccCCCCC-CcchhhhcCCCCCEEeccCCCCCC
Q psy3785 100 LYKFNVSNNMIA-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTISY 158 (184)
Q Consensus 100 l~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~L~~n~l~~ 158 (184)
|++|++++|.++ .+|..++++++|+.+++++|.+. .+|..+..+++|+.+++++|.+.+
T Consensus 238 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred CCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence 444444444443 23334444444444444444443 233333444444444444444443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.69 E-value=1.9e-16 Score=138.48 Aligned_cols=157 Identities=25% Similarity=0.317 Sum_probs=95.2
Q ss_pred ccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc-CchhhhCCCCCCEEEcccCccc-cchhhhc
Q psy3785 18 SLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVY 95 (184)
Q Consensus 18 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~ 95 (184)
.++..+..+++|+.|++++|.+.+ .+|..+..+++|+.|++++|.+++ +|..+..+++|++|++++|.++ .+|..+.
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 257 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQLVG-QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257 (968)
T ss_pred cCChhhhhCcCCCeeeccCCCCcC-cCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh
Confidence 455566677777777777777655 556666777777777777777664 5666666777777777777665 4555666
Q ss_pred CCCCceEEEccccccc-cchhhhcCCCCCCEEEccCCCCC-CcchhhhcCCCCCEEeccCCCCCC-CcHHHhhhhhcccc
Q psy3785 96 DLPHLYKFNVSNNMIA-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTISY-VPWKLFSKFHQNRS 172 (184)
Q Consensus 96 ~l~~l~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~L~~n~l~~-~~~~~~~~~~~l~~ 172 (184)
.+++|+.|++++|.++ .+|..+.+++.|+.+++++|.+. .+|..+..+++|+.+++++|.+++ +|. .+..++.|+.
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~ 336 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV-ALTSLPRLQV 336 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh-hHhcCCCCCE
Confidence 6666666666666655 34555556666666666666555 444445555555555555555554 322 2233444444
Q ss_pred cccc
Q psy3785 173 SRFG 176 (184)
Q Consensus 173 ~~~~ 176 (184)
+.+.
T Consensus 337 L~L~ 340 (968)
T PLN00113 337 LQLW 340 (968)
T ss_pred EECc
Confidence 4443
No 4
>KOG0617|consensus
Probab=99.64 E-value=5.8e-18 Score=116.98 Aligned_cols=153 Identities=20% Similarity=0.301 Sum_probs=135.2
Q ss_pred CCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceE
Q psy3785 23 ASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYK 102 (184)
Q Consensus 23 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~ 102 (184)
+..+..+..|.+++|... .+|+.+..+.+|+.|.+.+|++.++|..+..+++|+.|++.-|++.-+|.+|+.++-|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~--~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT--VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCcee--ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence 346778888999999987 789999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccc--cchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccc
Q psy3785 103 FNVSNNMIA--KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCA 178 (184)
Q Consensus 103 L~l~~n~~~--~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~ 178 (184)
|++..|.+. .+|..|..+.+|+.+.+++|.+.-+|..++.+++|+.+.+.+|.+-.+|.++.. +..++-+-+.++
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~-lt~lrelhiqgn 183 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGD-LTRLRELHIQGN 183 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHH-HHHHHHHhcccc
Confidence 999999987 568888889999999999999999999999999999999999999999998754 344444434333
No 5
>KOG4194|consensus
Probab=99.62 E-value=6.2e-17 Score=129.60 Aligned_cols=142 Identities=24% Similarity=0.356 Sum_probs=80.8
Q ss_pred cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCch-hhhCCCCCCEEEcccCccccch-hhhcCCCCceE
Q psy3785 25 ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPD-EIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYK 102 (184)
Q Consensus 25 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l~~ 102 (184)
++..|+.|++++|.+.. .-++.....++|++|+++.|.++.+++ .|..+..|++|.++.|+++.+. ..+..+.+|++
T Consensus 291 gLt~L~~L~lS~NaI~r-ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~ 369 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQR-IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHK 369 (873)
T ss_pred ccchhhhhccchhhhhe-eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhh
Confidence 45555555555555543 224444445556666666666665532 3555555666666666666554 23335666666
Q ss_pred EEccccccccc----hhhhcCCCCCCEEEccCCCCCCcc-hhhhcCCCCCEEeccCCCCCCCcHHHhhhh
Q psy3785 103 FNVSNNMIAKI----SDNIGNLTSLLVLNISNNKIESLP-ENIGYMKSLTHIDASHNTISYVPWKLFSKF 167 (184)
Q Consensus 103 L~l~~n~~~~~----~~~~~~~~~L~~l~l~~n~l~~l~-~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~ 167 (184)
|+++.|.++.. ...+.+++.|+.|.+.+|.++.+| +.+.+++.|++++|.+|.|.++....|+.+
T Consensus 370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred hcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence 66666665522 224555666666666666666665 345566666666666666666666666555
No 6
>KOG0444|consensus
Probab=99.62 E-value=1.2e-16 Score=129.25 Aligned_cols=159 Identities=24% Similarity=0.371 Sum_probs=142.5
Q ss_pred CCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceE
Q psy3785 23 ASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYK 102 (184)
Q Consensus 23 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~ 102 (184)
.+-++-++.+|+++|.+.+...|..+..++.+++|.+...++..+|+.++.+.+|+.|.+++|++..+...+..++.|+.
T Consensus 3 tgVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 3 TGVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRS 82 (1255)
T ss_pred ccccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHH
Confidence 34577889999999999988899999999999999999999999999999999999999999999988888888999999
Q ss_pred EEccccccc--cchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccccc
Q psy3785 103 FNVSNNMIA--KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALI 180 (184)
Q Consensus 103 L~l~~n~~~--~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~ 180 (184)
+.+..|++. .+|+.+..+..|+.+++++|.++++|..+...+++-.++||+|+|..||..+|--+.-|-++.++.|++
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence 999999876 778888899999999999999999999999999999999999999999999888777777788777765
Q ss_pred c
Q psy3785 181 M 181 (184)
Q Consensus 181 ~ 181 (184)
.
T Consensus 163 e 163 (1255)
T KOG0444|consen 163 E 163 (1255)
T ss_pred h
Confidence 3
No 7
>KOG0444|consensus
Probab=99.60 E-value=1.3e-16 Score=128.99 Aligned_cols=165 Identities=24% Similarity=0.365 Sum_probs=116.8
Q ss_pred ccccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhh
Q psy3785 14 ARLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEA 93 (184)
Q Consensus 14 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 93 (184)
+++.++.+.++.++.|+.+++.+|+.....+|+.+..+..|+.|+++.|++.++|..+..-+...+|++++|+|..+|..
T Consensus 65 N~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~ 144 (1255)
T KOG0444|consen 65 NQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNS 144 (1255)
T ss_pred hhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCch
Confidence 45566777777888888888888887777788888888888888888888888888888778888888888888888865
Q ss_pred hc-CCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCC--------------------------CcchhhhcCCCC
Q psy3785 94 VY-DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIE--------------------------SLPENIGYMKSL 146 (184)
Q Consensus 94 ~~-~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~--------------------------~l~~~~~~~~~L 146 (184)
++ ++..|-+|++++|++..+|+..+.+..|+.|.+++|.+. .+|..+..+.+|
T Consensus 145 lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL 224 (1255)
T KOG0444|consen 145 LFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNL 224 (1255)
T ss_pred HHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhh
Confidence 44 677777888888888777776666666666666666531 234444555666
Q ss_pred CEEeccCCCCCCCcHHHhhhhhccccccccccc
Q psy3785 147 THIDASHNTISYVPWKLFSKFHQNRSSRFGCAL 179 (184)
Q Consensus 147 ~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~ 179 (184)
+.+|+|.|.+..+|..++ .+..|+.+.++.|.
T Consensus 225 ~dvDlS~N~Lp~vPecly-~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 225 RDVDLSENNLPIVPECLY-KLRNLRRLNLSGNK 256 (1255)
T ss_pred hhccccccCCCcchHHHh-hhhhhheeccCcCc
Confidence 677777777777666443 34444444444443
No 8
>KOG4194|consensus
Probab=99.54 E-value=3.2e-15 Score=119.97 Aligned_cols=157 Identities=22% Similarity=0.321 Sum_probs=96.1
Q ss_pred CCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hhCCCCCCEEEcccCccccch-hhhcCCCCc
Q psy3785 23 ASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMIN-EAVYDLPHL 100 (184)
Q Consensus 23 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l 100 (184)
+.+-.++++|+++.|.++. .....+.++.+|..|.++.|.++.+|.. |..+++|+.|++..|++..+. -.|..++++
T Consensus 169 fp~~~ni~~L~La~N~It~-l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl 247 (873)
T KOG4194|consen 169 FPAKVNIKKLNLASNRITT-LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSL 247 (873)
T ss_pred CCCCCCceEEeeccccccc-cccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhh
Confidence 3344566667777666664 3345555666677777777777776654 344667777777666665332 122234444
Q ss_pred eE------------------------EEccccccccch-hhhcCCCCCCEEEccCCCCCCc-chhhhcCCCCCEEeccCC
Q psy3785 101 YK------------------------FNVSNNMIAKIS-DNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHN 154 (184)
Q Consensus 101 ~~------------------------L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~~n 154 (184)
+. |+++.|+++.+. .++.++..|+.|++++|.|..+ ++.|..+++|..++|+.|
T Consensus 248 ~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 248 QNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN 327 (873)
T ss_pred hhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence 44 444444444332 2344556666666666666644 355677777888888888
Q ss_pred CCCCCcHHHhhhhhcccccccccccc
Q psy3785 155 TISYVPWKLFSKFHQNRSSRFGCALI 180 (184)
Q Consensus 155 ~l~~~~~~~~~~~~~l~~~~~~~~~~ 180 (184)
+|+.++..-+..+.+|+.+.++.|.+
T Consensus 328 ~i~~l~~~sf~~L~~Le~LnLs~Nsi 353 (873)
T KOG4194|consen 328 RITRLDEGSFRVLSQLEELNLSHNSI 353 (873)
T ss_pred ccccCChhHHHHHHHhhhhcccccch
Confidence 88887777777777777777777665
No 9
>KOG0472|consensus
Probab=99.51 E-value=2e-16 Score=121.78 Aligned_cols=157 Identities=25% Similarity=0.346 Sum_probs=101.5
Q ss_pred cccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcC
Q psy3785 17 VSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD 96 (184)
Q Consensus 17 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 96 (184)
.+.|+++..+.++..+++.+|... .+|+..-.+..|+.++...|-+..+|+.++.+.+|..|++..|.+..+| .|..
T Consensus 150 ~slp~~~~~~~~l~~l~~~~n~l~--~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~g 226 (565)
T KOG0472|consen 150 SSLPEDMVNLSKLSKLDLEGNKLK--ALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPG 226 (565)
T ss_pred ccCchHHHHHHHHHHhhccccchh--hCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCc
Confidence 334444444455555555555444 2333333355555556555556566666666666666666666666665 4555
Q ss_pred CCCceEEEccccccccchhh-hcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccc
Q psy3785 97 LPHLYKFNVSNNMIAKISDN-IGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRF 175 (184)
Q Consensus 97 l~~l~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~ 175 (184)
+..|..++.+.|++..+|.+ .++++.+..+|+.+|+++++|.++--+++|..+|+++|.|+++|.+.... -++++.+
T Consensus 227 cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl--hL~~L~l 304 (565)
T KOG0472|consen 227 CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL--HLKFLAL 304 (565)
T ss_pred cHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc--eeeehhh
Confidence 66666677777776666654 34888889999999999999988888888999999999999988766543 3444444
Q ss_pred ccc
Q psy3785 176 GCA 178 (184)
Q Consensus 176 ~~~ 178 (184)
.+|
T Consensus 305 eGN 307 (565)
T KOG0472|consen 305 EGN 307 (565)
T ss_pred cCC
Confidence 333
No 10
>KOG0472|consensus
Probab=99.45 E-value=4.8e-15 Score=114.29 Aligned_cols=144 Identities=28% Similarity=0.423 Sum_probs=119.4
Q ss_pred ccccccCCCcCccccE-EEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhh
Q psy3785 16 LVSLVGSASASALLYT-YEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAV 94 (184)
Q Consensus 16 ~~~~~~~~~~~~~l~~-l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~ 94 (184)
+..+|..+..+..+.. +++++|.+. -+|..+..+++++.|++++|.+.++|..++.+..|++++++.|++..+|..+
T Consensus 400 L~elPk~L~~lkelvT~l~lsnn~is--fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~ 477 (565)
T KOG0472|consen 400 LCELPKRLVELKELVTDLVLSNNKIS--FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECL 477 (565)
T ss_pred HhhhhhhhHHHHHHHHHHHhhcCccc--cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHH
Confidence 3444444444444433 344444443 4678888899999999999999999999999999999999999999999887
Q ss_pred cCCCCceEEEccccccccch-hhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHH
Q psy3785 95 YDLPHLYKFNVSNNMIAKIS-DNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWK 162 (184)
Q Consensus 95 ~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~ 162 (184)
.....++.+-.++|++..++ +.++++.+|..+++.+|.+..+|+.++++++++++.+.+|++. .|+.
T Consensus 478 y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr-~Pr~ 545 (565)
T KOG0472|consen 478 YELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR-QPRH 545 (565)
T ss_pred hhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC-CCHH
Confidence 77777888888889999885 4599999999999999999999999999999999999999998 5554
No 11
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.35 E-value=1.2e-12 Score=92.33 Aligned_cols=123 Identities=27% Similarity=0.372 Sum_probs=43.9
Q ss_pred cCccccEEEeecCCCCCCCCccccc-CCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhc-CCCCceE
Q psy3785 25 ASALLYTYEISSDTGSGESNMSQSE-PVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVY-DLPHLYK 102 (184)
Q Consensus 25 ~~~~l~~l~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~-~l~~l~~ 102 (184)
+..+++.|++.+|.+.. + +.++ .+.+|+.|++++|.++.++ ++..++.|++|++++|+++.++..+. .+++|+.
T Consensus 17 n~~~~~~L~L~~n~I~~--I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST--I-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccc--c-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 44466777887777763 2 2333 4667777888888777763 46667777888888887777654432 4677777
Q ss_pred EEccccccccch--hhhcCCCCCCEEEccCCCCCCcch----hhhcCCCCCEEec
Q psy3785 103 FNVSNNMIAKIS--DNIGNLTSLLVLNISNNKIESLPE----NIGYMKSLTHIDA 151 (184)
Q Consensus 103 L~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~~l~~----~~~~~~~L~~l~L 151 (184)
|.+++|++..+. ..+..++.|+.+++.+|.++..+. .+..+|+|+.+|-
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 777777776442 356677777777777777774432 2566777777763
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.35 E-value=6.3e-13 Score=93.76 Aligned_cols=126 Identities=29% Similarity=0.387 Sum_probs=53.1
Q ss_pred cccCCCCccEEEecCCccccCchhhh-CCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchhhh-cCCCCCC
Q psy3785 47 QSEPVLKLKVLNLQYNNLKGLPDEIR-HLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNI-GNLTSLL 124 (184)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~~lp~~~~-~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~-~~~~~L~ 124 (184)
...+..++++|++.+|.++.+. .+. .+.+++.|++++|.++.++ .+..++.|++|++++|+++.+++.+ ..++.|+
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred cccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 3445667899999999999873 454 5789999999999999885 4667899999999999999886544 4689999
Q ss_pred EEEccCCCCCCcc--hhhhcCCCCCEEeccCCCCCCCcH---HHhhhhhcccccc
Q psy3785 125 VLNISNNKIESLP--ENIGYMKSLTHIDASHNTISYVPW---KLFSKFHQNRSSR 174 (184)
Q Consensus 125 ~l~l~~n~l~~l~--~~~~~~~~L~~l~L~~n~l~~~~~---~~~~~~~~l~~~~ 174 (184)
.+++++|++..+. ..+..++.|+.+++.+|+++..+. .+...+++|+.++
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 9999999998654 347889999999999999987543 4666777776554
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.35 E-value=2.2e-12 Score=109.23 Aligned_cols=127 Identities=23% Similarity=0.358 Sum_probs=68.8
Q ss_pred cccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhc------------
Q psy3785 28 LLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVY------------ 95 (184)
Q Consensus 28 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~------------ 95 (184)
.|+.|++++|.+. .+|..+. .+|+.|++++|++..+|..+. ++|+.|++++|+++.+|..+.
T Consensus 242 ~L~~L~Ls~N~L~--~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~ 315 (754)
T PRK15370 242 TIQEMELSINRIT--ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNS 315 (754)
T ss_pred cccEEECcCCccC--cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCc
Confidence 4566666666554 3343322 345555555555555554432 245555555555554432111
Q ss_pred -------CCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHh
Q psy3785 96 -------DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLF 164 (184)
Q Consensus 96 -------~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~ 164 (184)
..++|+.|.+++|.++.+|..+. +.|+.|++++|.++.+|..+ .+.|+.|++++|.++.+|..+.
T Consensus 316 Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~ 387 (754)
T PRK15370 316 LTALPETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP 387 (754)
T ss_pred cccCCccccccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH
Confidence 01345666666666665554332 46677777777776666543 2467777777777777666543
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.32 E-value=5e-12 Score=107.11 Aligned_cols=148 Identities=18% Similarity=0.275 Sum_probs=88.5
Q ss_pred ccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhc
Q psy3785 16 LVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVY 95 (184)
Q Consensus 16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~ 95 (184)
+.++|..+ .+.++.|++++|.+. .+|..+. .+|+.|++++|.++.+|..+. .+|+.|++++|.++.+|..+.
T Consensus 190 LtsLP~~I--p~~L~~L~Ls~N~Lt--sLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~ 261 (754)
T PRK15370 190 LTTIPACI--PEQITTLILDNNELK--SLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP 261 (754)
T ss_pred cCcCCccc--ccCCcEEEecCCCCC--cCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh
Confidence 34444433 246778888887766 4455433 467777777777777776553 357777777777776665543
Q ss_pred CCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhh-------------------cCCCCCEEeccCCCC
Q psy3785 96 DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIG-------------------YMKSLTHIDASHNTI 156 (184)
Q Consensus 96 ~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~-------------------~~~~L~~l~L~~n~l 156 (184)
.+|+.|++++|.++.+|..+. +.|+.|++++|.++.+|..+. ..++|+.+++++|.+
T Consensus 262 --s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L 337 (754)
T PRK15370 262 --SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENAL 337 (754)
T ss_pred --CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCcc
Confidence 356777777777766655442 356677777766665543211 123466666666666
Q ss_pred CCCcHHHhhhhhcccccccccc
Q psy3785 157 SYVPWKLFSKFHQNRSSRFGCA 178 (184)
Q Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~ 178 (184)
+++|..+. +.|+.+.++.|
T Consensus 338 t~LP~~l~---~sL~~L~Ls~N 356 (754)
T PRK15370 338 TSLPASLP---PELQVLDVSKN 356 (754)
T ss_pred ccCChhhc---CcccEEECCCC
Confidence 66665432 34555555444
No 15
>KOG0618|consensus
Probab=99.29 E-value=6.2e-13 Score=111.46 Aligned_cols=144 Identities=26% Similarity=0.375 Sum_probs=116.6
Q ss_pred cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hhCCCCCCEEEcccCccccchhhhcCCCCceEE
Q psy3785 25 ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINEAVYDLPHLYKF 103 (184)
Q Consensus 25 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L 103 (184)
.+..|+.|.+.+|...+ ..-+.+..+.+|+.|++++|.++.+|.. +.++..|+.|+++||.++.+|..+..++.|++|
T Consensus 357 ~~~~Lq~LylanN~Ltd-~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 357 NHAALQELYLANNHLTD-SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTL 435 (1081)
T ss_pred hhHHHHHHHHhcCcccc-cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHH
Confidence 56788888899998887 5555677889999999999999998865 788999999999999999999888889999999
Q ss_pred EccccccccchhhhcCCCCCCEEEccCCCCCCc--chhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccc
Q psy3785 104 NVSNNMIAKISDNIGNLTSLLVLNISNNKIESL--PENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNR 171 (184)
Q Consensus 104 ~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l--~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~ 171 (184)
..-+|++..+| .+..++.|+.+|++.|.++.+ +.... .++|+++|+++|.-..+....+..++.+.
T Consensus 436 ~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~ 503 (1081)
T KOG0618|consen 436 RAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLS 503 (1081)
T ss_pred hhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcccccchhhhHHhhhhh
Confidence 99999998888 688899999999999999844 33222 28899999999986555555555444443
No 16
>KOG0618|consensus
Probab=99.28 E-value=1.2e-13 Score=115.67 Aligned_cols=82 Identities=23% Similarity=0.414 Sum_probs=40.8
Q ss_pred CCCCceEEEccccccccchh-hhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccc
Q psy3785 96 DLPHLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSR 174 (184)
Q Consensus 96 ~l~~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~ 174 (184)
++.+|+.|+++.|++..+|+ .+..+..|+.|++++|+++.+|..+..++.|+++...+|++..+| -+..++++++++
T Consensus 381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLD 458 (1081)
T ss_pred cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEe
Confidence 44555555555555555543 344555555555555555555544444444444444444444444 122344445555
Q ss_pred ccccc
Q psy3785 175 FGCAL 179 (184)
Q Consensus 175 ~~~~~ 179 (184)
++||-
T Consensus 459 lS~N~ 463 (1081)
T KOG0618|consen 459 LSCNN 463 (1081)
T ss_pred cccch
Confidence 55543
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.28 E-value=3.4e-12 Score=98.44 Aligned_cols=136 Identities=25% Similarity=0.386 Sum_probs=71.0
Q ss_pred CCCcCccccEEEeecCCCCCCCCcccccCCCC---ccEEEecCCcccc-----CchhhhCC-CCCCEEEcccCccc----
Q psy3785 22 SASASALLYTYEISSDTGSGESNMSQSEPVLK---LKVLNLQYNNLKG-----LPDEIRHL-TNLNELALNNNQLE---- 88 (184)
Q Consensus 22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~---L~~L~l~~n~l~~-----lp~~~~~l-~~L~~L~l~~n~l~---- 88 (184)
.+..+++|+.|++++|.+.. ..+..+..+.. |+.|++++|.+++ +...+..+ ++|+.|++++|.++
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGP-DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHHhcCceeEEEccCCCCCh-hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 34445566666666666543 22333333333 6666666666552 22334444 56666666666655
Q ss_pred -cchhhhcCCCCceEEEcccccccc-----chhhhcCCCCCCEEEccCCCCCC-----cchhhhcCCCCCEEeccCCCCC
Q psy3785 89 -MINEAVYDLPHLYKFNVSNNMIAK-----ISDNIGNLTSLLVLNISNNKIES-----LPENIGYMKSLTHIDASHNTIS 157 (184)
Q Consensus 89 -~~~~~~~~l~~l~~L~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~L~~n~l~ 157 (184)
.++..+..+.++++|++++|.++. ++..+...+.|+.+++++|.++. +...+..+++|+.+++++|.++
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 222333344556666666666551 22334444566666666665542 1223444556666666666665
Q ss_pred C
Q psy3785 158 Y 158 (184)
Q Consensus 158 ~ 158 (184)
.
T Consensus 235 ~ 235 (319)
T cd00116 235 D 235 (319)
T ss_pred h
Confidence 4
No 18
>KOG4237|consensus
Probab=99.23 E-value=3.1e-12 Score=98.61 Aligned_cols=72 Identities=24% Similarity=0.248 Sum_probs=47.4
Q ss_pred ccccc-cCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecC-CccccCchh-hhCCCCCCEEEcccCccc
Q psy3785 16 LVSLV-GSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQY-NNLKGLPDE-IRHLTNLNELALNNNQLE 88 (184)
Q Consensus 16 ~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~lp~~-~~~l~~L~~L~l~~n~l~ 88 (184)
+..+| ++|+.+++||.+|++.|++.. .-|..+..++++.+|-+-+ |+|+.+|.+ |..+.+++.|.+.-|++.
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is~-I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~ 153 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNISF-IAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHIN 153 (498)
T ss_pred cccCChhhccchhhhceecccccchhh-cChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhc
Confidence 33433 456778888888888888876 6688888888877765544 787777654 555555555544444443
No 19
>KOG0532|consensus
Probab=99.23 E-value=2.5e-13 Score=108.75 Aligned_cols=142 Identities=32% Similarity=0.403 Sum_probs=75.3
Q ss_pred ccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhc
Q psy3785 16 LVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVY 95 (184)
Q Consensus 16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~ 95 (184)
...++..+..+..|+.+.++.|.+. .+|..+.++..|+.++++.|+++.+|..+..+ -|+.|.+++|+++.+|..+.
T Consensus 87 ~~elp~~~~~f~~Le~liLy~n~~r--~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig 163 (722)
T KOG0532|consen 87 FSELPEEACAFVSLESLILYHNCIR--TIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIG 163 (722)
T ss_pred cccCchHHHHHHHHHHHHHHhccce--ecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCccccCCcccc
Confidence 3344444445555555555555555 45556666666666666666666666555443 35556666666666555555
Q ss_pred CCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcH
Q psy3785 96 DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPW 161 (184)
Q Consensus 96 ~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~ 161 (184)
...++..++.+.|.+..+|..++.+..|+.+.+..|.+-.+|.++. .-.|..||++.|++..+|-
T Consensus 164 ~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv 228 (722)
T KOG0532|consen 164 LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPV 228 (722)
T ss_pred cchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecch
Confidence 5555555555555555555444444444444444444444444444 2224444444444444443
No 20
>KOG1259|consensus
Probab=99.22 E-value=1.4e-12 Score=97.81 Aligned_cols=134 Identities=22% Similarity=0.263 Sum_probs=113.5
Q ss_pred CcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEE
Q psy3785 24 SASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKF 103 (184)
Q Consensus 24 ~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L 103 (184)
...+.|..+|+++|.+. .+..++.-.|.++.|++++|.+..+.+ +..+++|+.|++++|.++.+...-..+.+.++|
T Consensus 281 dTWq~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccchh--hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 35678899999999988 567777878999999999999998754 788899999999999998775544468899999
Q ss_pred EccccccccchhhhcCCCCCCEEEccCCCCCCcc--hhhhcCCCCCEEeccCCCCCCCcH
Q psy3785 104 NVSNNMIAKISDNIGNLTSLLVLNISNNKIESLP--ENIGYMKSLTHIDASHNTISYVPW 161 (184)
Q Consensus 104 ~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~--~~~~~~~~L~~l~L~~n~l~~~~~ 161 (184)
.+++|.+..+ ..++.+-.|..+++++|++..+. ..++.+|.|.++.|.+|++..++.
T Consensus 358 ~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 358 KLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred ehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 9999988766 44777788999999999998663 458999999999999999999765
No 21
>KOG0532|consensus
Probab=99.20 E-value=3e-12 Score=102.69 Aligned_cols=145 Identities=25% Similarity=0.346 Sum_probs=128.1
Q ss_pred ccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhc
Q psy3785 16 LVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVY 95 (184)
Q Consensus 16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~ 95 (184)
+..++..+..+..|.+++++.|+.. .+|..+..+ -|+.|.+++|+++.+|..++-..+|..|+.+.|.+..+|..+.
T Consensus 110 ~r~ip~~i~~L~~lt~l~ls~NqlS--~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~ 186 (722)
T KOG0532|consen 110 IRTIPEAICNLEALTFLDLSSNQLS--HLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLG 186 (722)
T ss_pred ceecchhhhhhhHHHHhhhccchhh--cCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhh
Confidence 4457777888999999999999987 567776644 4889999999999999999988899999999999999999899
Q ss_pred CCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHh
Q psy3785 96 DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLF 164 (184)
Q Consensus 96 ~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~ 164 (184)
.+.+++.+++..|.+..+|+.+..+ .|..+|++.|++..+|-.+.+++.|+++-|.+|++.+-|..++
T Consensus 187 ~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC 254 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQIC 254 (722)
T ss_pred hHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHH
Confidence 9999999999999999999888855 4899999999999999999999999999999999999887654
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.18 E-value=1.2e-10 Score=98.75 Aligned_cols=131 Identities=26% Similarity=0.268 Sum_probs=72.5
Q ss_pred cccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhh
Q psy3785 15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAV 94 (184)
Q Consensus 15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~ 94 (184)
.+.++|..+. ++++.|++.+|++. .+|.. .++|++|++++|.++.+|.. .++|+.|++.+|.++.+|..+
T Consensus 212 ~LtsLP~~l~--~~L~~L~L~~N~Lt--~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp 281 (788)
T PRK15387 212 GLTTLPDCLP--AHITTLVIPDNNLT--SLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP 281 (788)
T ss_pred CCCcCCcchh--cCCCEEEccCCcCC--CCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhch
Confidence 4445555443 36777777777766 34432 46677777777777776532 235555555555555444311
Q ss_pred c-----------------CCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCC
Q psy3785 95 Y-----------------DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157 (184)
Q Consensus 95 ~-----------------~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~ 157 (184)
. ..++|+.|++++|.++.+|... ..|..|++.+|.++.+|.. ...|+.|++++|.|+
T Consensus 282 ~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls 355 (788)
T PRK15387 282 SGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLA 355 (788)
T ss_pred hhcCEEECcCCccccccccccccceeECCCCccccCCCCc---ccccccccccCcccccccc---ccccceEecCCCccC
Confidence 0 1234555555555554443311 2344445555555544431 236788888888888
Q ss_pred CCcH
Q psy3785 158 YVPW 161 (184)
Q Consensus 158 ~~~~ 161 (184)
.+|.
T Consensus 356 ~LP~ 359 (788)
T PRK15387 356 SLPT 359 (788)
T ss_pred CCCC
Confidence 8765
No 23
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.16 E-value=1.8e-11 Score=97.46 Aligned_cols=146 Identities=32% Similarity=0.449 Sum_probs=66.7
Q ss_pred cccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccc
Q psy3785 28 LLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSN 107 (184)
Q Consensus 28 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~ 107 (184)
+|+.+++++|.+. .+|..+..++.|+.|+++.|++.++|......+.++.|++++|.+..+|........++++.+++
T Consensus 141 nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 141 NLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSN 218 (394)
T ss_pred hcccccccccchh--hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcC
Confidence 4444444444443 22333444444444444444444444433344444444444444444443322222344444444
Q ss_pred cccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccc
Q psy3785 108 NMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGC 177 (184)
Q Consensus 108 n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~ 177 (184)
|.....+..+.....+..+.+.+|.+..++..++.++.++.+++++|.++.++. +.....++.+..+.
T Consensus 219 N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~ 286 (394)
T COG4886 219 NSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSG 286 (394)
T ss_pred CcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc--ccccCccCEEeccC
Confidence 432222233333344444444444444444445556666666666666666654 34444444444443
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.16 E-value=8.8e-11 Score=99.54 Aligned_cols=100 Identities=26% Similarity=0.331 Sum_probs=62.4
Q ss_pred CccEEEecCCccccCchhhhC-----------------CCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchh
Q psy3785 53 KLKVLNLQYNNLKGLPDEIRH-----------------LTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISD 115 (184)
Q Consensus 53 ~L~~L~l~~n~l~~lp~~~~~-----------------l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~ 115 (184)
+|+.|++++|+++.+|....+ ...|+.|++++|.++.+|.. .++++.|++++|+++.+|.
T Consensus 343 ~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~ 419 (788)
T PRK15387 343 GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPM 419 (788)
T ss_pred ccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCc
Confidence 466666666666655432111 12455666666666655532 2456666777777666654
Q ss_pred hhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCC
Q psy3785 116 NIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158 (184)
Q Consensus 116 ~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~ 158 (184)
.. ..|+.+++++|.++.+|..+..++.|..+++++|++++
T Consensus 420 l~---~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 420 LP---SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred ch---hhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCc
Confidence 22 34566777777777777777777788888888888877
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.13 E-value=5.5e-11 Score=91.72 Aligned_cols=164 Identities=22% Similarity=0.222 Sum_probs=115.9
Q ss_pred cccccCCCcCccccEEEeecCCCCC-----CCCcccccCCCCccEEEecCCcccc-CchhhhCCCC---CCEEEcccCcc
Q psy3785 17 VSLVGSASASALLYTYEISSDTGSG-----ESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTN---LNELALNNNQL 87 (184)
Q Consensus 17 ~~~~~~~~~~~~l~~l~l~~~~~~~-----~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~---L~~L~l~~n~l 87 (184)
..++..+...+.++.++++++.... ..++..+..+++|+.|++++|.+.. .+..+..+.. |+.|++++|++
T Consensus 41 ~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~ 120 (319)
T cd00116 41 KALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL 120 (319)
T ss_pred HHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCcc
Confidence 3455556677788999998887652 1234566778899999999999875 3444444444 99999999988
Q ss_pred cc-----chhhhcCC-CCceEEEccccccc-----cchhhhcCCCCCCEEEccCCCCCC-----cchhhhcCCCCCEEec
Q psy3785 88 EM-----INEAVYDL-PHLYKFNVSNNMIA-----KISDNIGNLTSLLVLNISNNKIES-----LPENIGYMKSLTHIDA 151 (184)
Q Consensus 88 ~~-----~~~~~~~l-~~l~~L~l~~n~~~-----~~~~~~~~~~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~L 151 (184)
+. +...+..+ ++++.+++++|.++ .++..+..+..++.+++++|.++. ++..+...+.|+.+++
T Consensus 121 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L 200 (319)
T cd00116 121 GDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDL 200 (319)
T ss_pred chHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEec
Confidence 72 23445566 88999999999987 234456778889999999999882 3334556679999999
Q ss_pred cCCCCCCCcH-H---Hhhhhhcccccccccccc
Q psy3785 152 SHNTISYVPW-K---LFSKFHQNRSSRFGCALI 180 (184)
Q Consensus 152 ~~n~l~~~~~-~---~~~~~~~l~~~~~~~~~~ 180 (184)
++|.++.... . .+..++.++.+.++.+.+
T Consensus 201 ~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 201 NNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred cCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 9999886332 2 223445677777766543
No 26
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.11 E-value=5.2e-10 Score=99.74 Aligned_cols=90 Identities=22% Similarity=0.339 Sum_probs=50.1
Q ss_pred cccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCc-cccCchhhhCCCCCCEEEcccC-ccccchh
Q psy3785 15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNN-LKGLPDEIRHLTNLNELALNNN-QLEMINE 92 (184)
Q Consensus 15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~~~~l~~L~~L~l~~n-~l~~~~~ 92 (184)
.+..++..+..+++|+.++++++.... .+| .+..+++|+.|++.+|. +..+|..+..+++|+.|++++| .++.+|.
T Consensus 622 ~l~~L~~~~~~l~~Lk~L~Ls~~~~l~-~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 622 KLEKLWDGVHSLTGLRNIDLRGSKNLK-EIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred cccccccccccCCCCCEEECCCCCCcC-cCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence 344555666666777777776665432 333 35556666667766653 4446666666666666666665 3445543
Q ss_pred hhcCCCCceEEEccc
Q psy3785 93 AVYDLPHLYKFNVSN 107 (184)
Q Consensus 93 ~~~~l~~l~~L~l~~ 107 (184)
.+ .+.+|+.|++++
T Consensus 700 ~i-~l~sL~~L~Lsg 713 (1153)
T PLN03210 700 GI-NLKSLYRLNLSG 713 (1153)
T ss_pred cC-CCCCCCEEeCCC
Confidence 32 334444444443
No 27
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.11 E-value=7.7e-10 Score=98.68 Aligned_cols=85 Identities=25% Similarity=0.383 Sum_probs=48.3
Q ss_pred CCCEEEcccCc-cccchhhhcCCCCceEEEccccc-cccchhhhcCCC---------------------CCCEEEccCCC
Q psy3785 76 NLNELALNNNQ-LEMINEAVYDLPHLYKFNVSNNM-IAKISDNIGNLT---------------------SLLVLNISNNK 132 (184)
Q Consensus 76 ~L~~L~l~~n~-l~~~~~~~~~l~~l~~L~l~~n~-~~~~~~~~~~~~---------------------~L~~l~l~~n~ 132 (184)
+|+.|++++|. +..+|..+..+++|+.|++++|. ++.+|... .++ +++.|++++|.
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~ 857 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG 857 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCC
Confidence 45555555553 33566666667777777777653 44444332 233 34555555565
Q ss_pred CCCcchhhhcCCCCCEEeccC-CCCCCCcH
Q psy3785 133 IESLPENIGYMKSLTHIDASH-NTISYVPW 161 (184)
Q Consensus 133 l~~l~~~~~~~~~L~~l~L~~-n~l~~~~~ 161 (184)
++++|..+..+++|+.+++++ +.+..+|.
T Consensus 858 i~~iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 858 IEEVPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred CccChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 666666666666666666666 34555544
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.06 E-value=1.1e-10 Score=92.86 Aligned_cols=154 Identities=23% Similarity=0.346 Sum_probs=102.5
Q ss_pred cCccccEEEeecCCCCCCCCcccccCCC-CccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEE
Q psy3785 25 ASALLYTYEISSDTGSGESNMSQSEPVL-KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKF 103 (184)
Q Consensus 25 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L 103 (184)
..+.++.+++.++.+. .+++....+. +|+.|++++|.+..+|..+..++.|+.|++++|++..+|......+.++.+
T Consensus 114 ~~~~l~~L~l~~n~i~--~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 114 ELTNLTSLDLDNNNIT--DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cccceeEEecCCcccc--cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 4456677777777766 5555555553 777777777777777666677777777777777777776655566677777
Q ss_pred EccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccccccc
Q psy3785 104 NVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALIM 181 (184)
Q Consensus 104 ~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (184)
.+++|+++.+|........|..+.+++|.+...+..+.....+..+.+.+|++..++..+ .....++.+...++.+.
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~-~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESI-GNLSNLETLDLSNNQIS 268 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchh-ccccccceecccccccc
Confidence 777777777766555555577777777765555555666677777777777776654322 33344666666666554
No 29
>PLN03150 hypothetical protein; Provisional
Probab=98.99 E-value=2.9e-09 Score=89.42 Aligned_cols=105 Identities=25% Similarity=0.431 Sum_probs=84.5
Q ss_pred CccEEEecCCcccc-CchhhhCCCCCCEEEcccCccc-cchhhhcCCCCceEEEccccccc-cchhhhcCCCCCCEEEcc
Q psy3785 53 KLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVYDLPHLYKFNVSNNMIA-KISDNIGNLTSLLVLNIS 129 (184)
Q Consensus 53 ~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~l~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~ 129 (184)
.++.|++.+|.+++ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++ .+|+.+++++.|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37778888888886 6888888889999999998887 67777888888999999998887 568888888889999999
Q ss_pred CCCCC-CcchhhhcC-CCCCEEeccCCCCC
Q psy3785 130 NNKIE-SLPENIGYM-KSLTHIDASHNTIS 157 (184)
Q Consensus 130 ~n~l~-~l~~~~~~~-~~L~~l~L~~n~l~ 157 (184)
+|.++ .+|..++.. ..+..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 88888 777766543 35667888888643
No 30
>PLN03150 hypothetical protein; Provisional
Probab=98.93 E-value=3.6e-09 Score=88.88 Aligned_cols=92 Identities=35% Similarity=0.539 Sum_probs=82.6
Q ss_pred CCCEEEcccCccc-cchhhhcCCCCceEEEccccccc-cchhhhcCCCCCCEEEccCCCCC-CcchhhhcCCCCCEEecc
Q psy3785 76 NLNELALNNNQLE-MINEAVYDLPHLYKFNVSNNMIA-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDAS 152 (184)
Q Consensus 76 ~L~~L~l~~n~l~-~~~~~~~~l~~l~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~L~ 152 (184)
.+..|++++|.+. .+|..+..+++|+.|++++|.++ .+|..++.++.|+.|++++|.++ .+|..++.+++|+.++++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3678899999988 77888999999999999999998 67888999999999999999999 788889999999999999
Q ss_pred CCCCCC-CcHHHhhhh
Q psy3785 153 HNTISY-VPWKLFSKF 167 (184)
Q Consensus 153 ~n~l~~-~~~~~~~~~ 167 (184)
+|.+++ +|..+....
T Consensus 499 ~N~l~g~iP~~l~~~~ 514 (623)
T PLN03150 499 GNSLSGRVPAALGGRL 514 (623)
T ss_pred CCcccccCChHHhhcc
Confidence 999998 888766543
No 31
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.91 E-value=1.7e-09 Score=63.25 Aligned_cols=58 Identities=38% Similarity=0.568 Sum_probs=32.9
Q ss_pred CCccEEEecCCccccCch-hhhCCCCCCEEEcccCccccch-hhhcCCCCceEEEccccc
Q psy3785 52 LKLKVLNLQYNNLKGLPD-EIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNM 109 (184)
Q Consensus 52 ~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l~~L~l~~n~ 109 (184)
|+|++|++++|+++.+|. .|..+++|++|++++|.++.++ ..+..+++|+++++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 345566666666666543 3555666666666666666554 334455566666665554
No 32
>KOG1259|consensus
Probab=98.89 E-value=2.6e-10 Score=85.76 Aligned_cols=131 Identities=21% Similarity=0.311 Sum_probs=101.2
Q ss_pred cccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchhhhcCCCCCCEE
Q psy3785 47 QSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVL 126 (184)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l 126 (184)
.+-.+..|+++|+++|.++.+.++..-.+.++.|++++|.+..+.. +..+++|+.|++++|.++.+-.+.-.+.+++.+
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred ecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 3444678999999999999988877778899999999999987754 778899999999999988775555566778899
Q ss_pred EccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcH-HHhhhhhccccccccccc
Q psy3785 127 NISNNKIESLPENIGYMKSLTHIDASHNTISYVPW-KLFSKFHQNRSSRFGCAL 179 (184)
Q Consensus 127 ~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~-~~~~~~~~l~~~~~~~~~ 179 (184)
.++.|.+.++.. ++.+.+|..+|+++|+|..+.. .-...++.|..+.+..|.
T Consensus 358 ~La~N~iE~LSG-L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 358 KLAQNKIETLSG-LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ehhhhhHhhhhh-hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 999998877643 6778899999999999987543 223445555555544443
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.81 E-value=5.6e-09 Score=61.01 Aligned_cols=57 Identities=40% Similarity=0.604 Sum_probs=34.0
Q ss_pred CCCEEEcccCccccchh-hhcCCCCceEEEccccccccch-hhhcCCCCCCEEEccCCC
Q psy3785 76 NLNELALNNNQLEMINE-AVYDLPHLYKFNVSNNMIAKIS-DNIGNLTSLLVLNISNNK 132 (184)
Q Consensus 76 ~L~~L~l~~n~l~~~~~-~~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~ 132 (184)
+|++|++++|+++.+|. .+..+++|+++++++|.++.++ ..+.++++|+.+++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666666653 3445666666666666666553 345666666666666654
No 34
>KOG4579|consensus
Probab=98.80 E-value=7.5e-10 Score=74.18 Aligned_cols=111 Identities=21% Similarity=0.328 Sum_probs=68.7
Q ss_pred ccEEEecCCccccCc---hhhhCCCCCCEEEcccCccccchhhhcC-CCCceEEEccccccccchhhhcCCCCCCEEEcc
Q psy3785 54 LKVLNLQYNNLKGLP---DEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIAKISDNIGNLTSLLVLNIS 129 (184)
Q Consensus 54 L~~L~l~~n~l~~lp---~~~~~l~~L~~L~l~~n~l~~~~~~~~~-l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~ 129 (184)
+..++++.|.+-.++ ..+....+|..+++++|.+..+|..+.. .+..+.+++++|.++.+|..+..++.|+.++++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 445556666555432 3344445666666667666666655553 446666677777766666666666777777777
Q ss_pred CCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHh
Q psy3785 130 NNKIESLPENIGYMKSLTHIDASHNTISYVPWKLF 164 (184)
Q Consensus 130 ~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~ 164 (184)
.|.+...|+.+..+.++..++.-+|.+..+|...+
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~ 143 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLF 143 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCCccccCcHHHh
Confidence 77666666665556666666666666666665533
No 35
>KOG1909|consensus
Probab=98.79 E-value=9.3e-10 Score=83.81 Aligned_cols=164 Identities=16% Similarity=0.128 Sum_probs=113.5
Q ss_pred ccccccCCCcCccccEEEeecCCCCCCCC---cccccCCCCccEEEecCCccccC-----ch---------hhhCCCCCC
Q psy3785 16 LVSLVGSASASALLYTYEISSDTGSGESN---MSQSEPVLKLKVLNLQYNNLKGL-----PD---------EIRHLTNLN 78 (184)
Q Consensus 16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~n~l~~l-----p~---------~~~~l~~L~ 78 (184)
++-+-..+...++|+.++||+|-+....+ ...+.++..|++|.+.+|.++.. .. ...+-+.|+
T Consensus 81 L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lr 160 (382)
T KOG1909|consen 81 LKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLR 160 (382)
T ss_pred HHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceE
Confidence 33444555678899999999999875332 23455667899999999998852 11 124456899
Q ss_pred EEEcccCcccc-----chhhhcCCCCceEEEcccccccc-----chhhhcCCCCCCEEEccCCCCCC-----cchhhhcC
Q psy3785 79 ELALNNNQLEM-----INEAVYDLPHLYKFNVSNNMIAK-----ISDNIGNLTSLLVLNISNNKIES-----LPENIGYM 143 (184)
Q Consensus 79 ~L~l~~n~l~~-----~~~~~~~l~~l~~L~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l~~-----l~~~~~~~ 143 (184)
+++..+|++.. +...+...+.++.+.++.|+|.. +...+..|+.|+.|++.+|-++. +...+..+
T Consensus 161 v~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~ 240 (382)
T KOG1909|consen 161 VFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW 240 (382)
T ss_pred EEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc
Confidence 99999998873 33445567888999999888761 24567888999999999998872 23446677
Q ss_pred CCCCEEeccCCCCCCCc-H----HHhhhhhccccccccccc
Q psy3785 144 KSLTHIDASHNTISYVP-W----KLFSKFHQNRSSRFGCAL 179 (184)
Q Consensus 144 ~~L~~l~L~~n~l~~~~-~----~~~~~~~~l~~~~~~~~~ 179 (184)
+.|+.++++++.+..-- . .+.+..+.++.+.+..|-
T Consensus 241 ~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 241 PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred chheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence 88888888888887622 2 223445566666655443
No 36
>KOG3207|consensus
Probab=98.75 E-value=3.9e-09 Score=82.68 Aligned_cols=135 Identities=24% Similarity=0.315 Sum_probs=63.3
Q ss_pred CcCccccEEEeecCCCCC-CCCcccccCCCCccEEEecCCccccC-chh-hhCCCCCCEEEcccCccc--cchhhhcCCC
Q psy3785 24 SASALLYTYEISSDTGSG-ESNMSQSEPVLKLKVLNLQYNNLKGL-PDE-IRHLTNLNELALNNNQLE--MINEAVYDLP 98 (184)
Q Consensus 24 ~~~~~l~~l~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~-~~~l~~L~~L~l~~n~l~--~~~~~~~~l~ 98 (184)
..+++++.||++.|-+.. ..+......+|+|+.|.++.|.+... ... -..+++++.|.++.|.++ .+..-...+|
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 345566666666555442 12333344455555555555554431 110 123445555555555544 2222222344
Q ss_pred ------------------------CceEEEccccccccch--hhhcCCCCCCEEEccCCCCCCc--chh-----hhcCCC
Q psy3785 99 ------------------------HLYKFNVSNNMIAKIS--DNIGNLTSLLVLNISNNKIESL--PEN-----IGYMKS 145 (184)
Q Consensus 99 ------------------------~l~~L~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~~l--~~~-----~~~~~~ 145 (184)
.|+.|++++|.+-..+ ...+.++.|..++++.+++.++ |+. ....++
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k 302 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK 302 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccc
Confidence 4555555555444332 2345555555555555555532 221 233455
Q ss_pred CCEEeccCCCCCC
Q psy3785 146 LTHIDASHNTISY 158 (184)
Q Consensus 146 L~~l~L~~n~l~~ 158 (184)
|++|++..|++..
T Consensus 303 L~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 303 LEYLNISENNIRD 315 (505)
T ss_pred ceeeecccCcccc
Confidence 6666666666544
No 37
>KOG4237|consensus
Probab=98.70 E-value=2.3e-09 Score=83.10 Aligned_cols=111 Identities=23% Similarity=0.370 Sum_probs=55.4
Q ss_pred ccEEEecCCccccCchh-hhCCCCCCEEEcccCccccc-hhhhcCCCCceEEEccc-cccccch-hhhcCCCCCCEEEcc
Q psy3785 54 LKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSN-NMIAKIS-DNIGNLTSLLVLNIS 129 (184)
Q Consensus 54 L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~l~~L~l~~-n~~~~~~-~~~~~~~~L~~l~l~ 129 (184)
.+++.+..|+|+.+|+. |..+++|+.|+|++|.|+.+ |..|..+..+..|.+.+ |+|+.+| ..|+++..++.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 44555555555555433 45555555555555555544 34444555554444443 4555554 234555555555555
Q ss_pred CCCCCCcc-hhhhcCCCCCEEeccCCCCCCCcHHHh
Q psy3785 130 NNKIESLP-ENIGYMKSLTHIDASHNTISYVPWKLF 164 (184)
Q Consensus 130 ~n~l~~l~-~~~~~~~~L~~l~L~~n~l~~~~~~~~ 164 (184)
-|.+..++ +.+..+++++.+++-+|.+..++...+
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf 184 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTF 184 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccccc
Confidence 55554333 234445555555555555554444333
No 38
>KOG1859|consensus
Probab=98.69 E-value=1.2e-09 Score=90.53 Aligned_cols=125 Identities=23% Similarity=0.318 Sum_probs=76.4
Q ss_pred CccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchhh-hcCCCCCCEEEccCC
Q psy3785 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDN-IGNLTSLLVLNISNN 131 (184)
Q Consensus 53 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n 131 (184)
.|...++++|.+..+...++-++.++.|+|++|+++.+. .+..+++|++|+++.|.+..+|.- ..+|. |..|.+++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 355556666666665555666667777777777776654 455667777777777777666542 22333 777777777
Q ss_pred CCCCcchhhhcCCCCCEEeccCCCCCCCc-HHHhhhhhcccccccccccc
Q psy3785 132 KIESLPENIGYMKSLTHIDASHNTISYVP-WKLFSKFHQNRSSRFGCALI 180 (184)
Q Consensus 132 ~l~~l~~~~~~~~~L~~l~L~~n~l~~~~-~~~~~~~~~l~~~~~~~~~~ 180 (184)
.++++.. +.++++|+.+|++.|.|.+.. -.....+..|..+++.+|-+
T Consensus 243 ~l~tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 243 ALTTLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHHhhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 7666533 566777777777777776632 23334445555555544433
No 39
>KOG3207|consensus
Probab=98.65 E-value=2.2e-09 Score=83.96 Aligned_cols=162 Identities=17% Similarity=0.190 Sum_probs=107.6
Q ss_pred cccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc---CchhhhCCCCCCEEEcccCccccc-hhh-
Q psy3785 19 LVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG---LPDEIRHLTNLNELALNNNQLEMI-NEA- 93 (184)
Q Consensus 19 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---lp~~~~~l~~L~~L~l~~n~l~~~-~~~- 93 (184)
+...=+.+.+|+.+.+.++....-........+++++.|+++.|-+.. +-.-...+++|+.|.++.|++... ...
T Consensus 113 i~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~ 192 (505)
T KOG3207|consen 113 IAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT 192 (505)
T ss_pred HHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc
Confidence 333346788999999998887652222466779999999999998776 334457799999999999998732 211
Q ss_pred hcCCCCceEEEccccccc--cchhhhcCC------------------------CCCCEEEccCCCCCCcc--hhhhcCCC
Q psy3785 94 VYDLPHLYKFNVSNNMIA--KISDNIGNL------------------------TSLLVLNISNNKIESLP--ENIGYMKS 145 (184)
Q Consensus 94 ~~~l~~l~~L~l~~n~~~--~~~~~~~~~------------------------~~L~~l~l~~n~l~~l~--~~~~~~~~ 145 (184)
-..+++++.|.++.|+++ .+......+ .+|+.|+|++|.+..++ ...+.++.
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence 125789999999999987 222222233 45556666666655554 23566777
Q ss_pred CCEEeccCCCCCCC--cHH----Hhhhhhcccccccccccc
Q psy3785 146 LTHIDASHNTISYV--PWK----LFSKFHQNRSSRFGCALI 180 (184)
Q Consensus 146 L~~l~L~~n~l~~~--~~~----~~~~~~~l~~~~~~~~~~ 180 (184)
|+.++++.+.++++ |.. .-...+.++.+.+..|.+
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 77777777777663 221 123445666666666655
No 40
>KOG4579|consensus
Probab=98.62 E-value=1.4e-09 Score=72.86 Aligned_cols=132 Identities=18% Similarity=0.192 Sum_probs=96.6
Q ss_pred cCccccEEEeecCCCCCCCCccc---ccCCCCccEEEecCCccccCchhhhC-CCCCCEEEcccCccccchhhhcCCCCc
Q psy3785 25 ASALLYTYEISSDTGSGESNMSQ---SEPVLKLKVLNLQYNNLKGLPDEIRH-LTNLNELALNNNQLEMINEAVYDLPHL 100 (184)
Q Consensus 25 ~~~~l~~l~l~~~~~~~~~~~~~---~~~l~~L~~L~l~~n~l~~lp~~~~~-l~~L~~L~l~~n~l~~~~~~~~~l~~l 100 (184)
.-..+..++++.+..- .+++. +....+|+..++++|.+.++|+.|.. .+..+++++++|.+..+|..+..++.|
T Consensus 25 dakE~h~ldLssc~lm--~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aL 102 (177)
T KOG4579|consen 25 DAKELHFLDLSSCQLM--YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPAL 102 (177)
T ss_pred HHHHhhhcccccchhh--HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHh
Confidence 4455667778777644 23333 33446677789999999999887644 558899999999999999888899999
Q ss_pred eEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCC
Q psy3785 101 YKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158 (184)
Q Consensus 101 ~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~ 158 (184)
+.++++.|.+...|.-+..+.++-.|+..+|...+++-.+..........+.++++.+
T Consensus 103 r~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~ 160 (177)
T KOG4579|consen 103 RSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGD 160 (177)
T ss_pred hhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccc
Confidence 9999999999888877766888888888888887776543333333344455556655
No 41
>KOG1859|consensus
Probab=98.59 E-value=5e-10 Score=92.60 Aligned_cols=130 Identities=25% Similarity=0.312 Sum_probs=103.8
Q ss_pred ccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchh-hhcCCCCceEEEc
Q psy3785 27 ALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINE-AVYDLPHLYKFNV 105 (184)
Q Consensus 27 ~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~l~~L~l 105 (184)
.+|...+.++|... .+..++.-++.++.|+++.|+++++. .+..+++|+.|||++|++..+|. ....+ +|+.|.+
T Consensus 164 n~L~~a~fsyN~L~--~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV--LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHH--hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeee
Confidence 34555566666655 66788888899999999999999975 78889999999999999998874 22223 5999999
Q ss_pred cccccccchhhhcCCCCCCEEEccCCCCCCcch--hhhcCCCCCEEeccCCCCCCCcH
Q psy3785 106 SNNMIAKISDNIGNLTSLLVLNISNNKIESLPE--NIGYMKSLTHIDASHNTISYVPW 161 (184)
Q Consensus 106 ~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~--~~~~~~~L~~l~L~~n~l~~~~~ 161 (184)
++|.++.+ ..+.++..|+.||+++|-+.+... .++.+..|+.+.|.+|++..-|.
T Consensus 240 rnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 240 RNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred cccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence 99998876 346678889999999998875532 36677889999999999988655
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.43 E-value=4.2e-07 Score=49.30 Aligned_cols=38 Identities=39% Similarity=0.628 Sum_probs=21.5
Q ss_pred CccEEEecCCccccCchhhhCCCCCCEEEcccCccccc
Q psy3785 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI 90 (184)
Q Consensus 53 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~ 90 (184)
+|++|++++|+++++|..+.++++|++|++++|+++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45566666666666655556666666666666665544
No 43
>KOG0531|consensus
Probab=98.39 E-value=5.9e-08 Score=77.92 Aligned_cols=110 Identities=27% Similarity=0.427 Sum_probs=59.7
Q ss_pred ccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchhhhcCCCCCCEEE
Q psy3785 48 SEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLN 127 (184)
Q Consensus 48 ~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~ 127 (184)
+..+.+++.+++.+|.+..+...+..+++|++|++++|.|+.+. .+..+..|+.|++.+|.++.+.. +..+..++.++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~ 168 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISG-LESLKSLKLLD 168 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccC-Cccchhhhccc
Confidence 44455566666666666655443455566666666666666542 22334446666666666654422 33355566666
Q ss_pred ccCCCCCCcchh-hhcCCCCCEEeccCCCCCCC
Q psy3785 128 ISNNKIESLPEN-IGYMKSLTHIDASHNTISYV 159 (184)
Q Consensus 128 l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~ 159 (184)
+++|.++.+... ...+.++..+.+.+|.+..+
T Consensus 169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 169 LSYNRIVDIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred CCcchhhhhhhhhhhhccchHHHhccCCchhcc
Confidence 666665544432 34455555555666655553
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.37 E-value=6.1e-07 Score=48.66 Aligned_cols=38 Identities=34% Similarity=0.553 Sum_probs=19.2
Q ss_pred CCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCC
Q psy3785 122 SLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYV 159 (184)
Q Consensus 122 ~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~ 159 (184)
+|+.+++++|.++++|..+..+++|+.+++++|+|+.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 34555555555555554455555555555555555543
No 45
>KOG3665|consensus
Probab=98.28 E-value=6.2e-07 Score=75.98 Aligned_cols=145 Identities=17% Similarity=0.162 Sum_probs=89.4
Q ss_pred CccccEEEeecCCCCCCCCcccccC-CCCccEEEecCCcccc--CchhhhCCCCCCEEEcccCccccchhhhcCCCCceE
Q psy3785 26 SALLYTYEISSDTGSGESNMSQSEP-VLKLKVLNLQYNNLKG--LPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYK 102 (184)
Q Consensus 26 ~~~l~~l~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~n~l~~--lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~ 102 (184)
-.+|+.|++++........|..++. +|+|+.|.+++-.+.. +..-..++++|..||+++++++.+ .++..+++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 4567777777766554445555555 5777777777776654 222345567777777777777765 55667777777
Q ss_pred EEccccccccch--hhhcCCCCCCEEEccCCCCCCcchh-------hhcCCCCCEEeccCCCCCC-CcHHHhhhhhccc
Q psy3785 103 FNVSNNMIAKIS--DNIGNLTSLLVLNISNNKIESLPEN-------IGYMKSLTHIDASHNTISY-VPWKLFSKFHQNR 171 (184)
Q Consensus 103 L~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~~l~~~-------~~~~~~L~~l~L~~n~l~~-~~~~~~~~~~~l~ 171 (184)
|.+.+=.+.... ..+.++++|+.||++..+...-+.. -..+|.|+.+|.|++.+.. +-.......++++
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 777766555322 3466777777887777654422211 2347777888887777766 3344444444444
No 46
>KOG1644|consensus
Probab=98.27 E-value=1.6e-06 Score=61.88 Aligned_cols=103 Identities=27% Similarity=0.412 Sum_probs=71.4
Q ss_pred CccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcC-CCCceEEEccccccccch--hhhcCCCCCCEEEcc
Q psy3785 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIAKIS--DNIGNLTSLLVLNIS 129 (184)
Q Consensus 53 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~-l~~l~~L~l~~n~~~~~~--~~~~~~~~L~~l~l~ 129 (184)
....+|+.+|.+-.++ .+..++.|.+|.+.+|+|+.+...+.. ++++..|.+.+|.+..+. ..+..||+|+.+.+-
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 4666778888776642 356677788888888888877655553 567888888888877653 356777888888888
Q ss_pred CCCCCCcch----hhhcCCCCCEEeccCCCC
Q psy3785 130 NNKIESLPE----NIGYMKSLTHIDASHNTI 156 (184)
Q Consensus 130 ~n~l~~l~~----~~~~~~~L~~l~L~~n~l 156 (184)
+|.+...+. .+..+|+|+.+|..+-..
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 887775432 255677788887665544
No 47
>KOG4658|consensus
Probab=98.23 E-value=1.4e-06 Score=75.77 Aligned_cols=107 Identities=23% Similarity=0.250 Sum_probs=61.1
Q ss_pred CccccEEEeecCCC-CCCCCcccccCCCCccEEEecCC-ccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEE
Q psy3785 26 SALLYTYEISSDTG-SGESNMSQSEPVLKLKVLNLQYN-NLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKF 103 (184)
Q Consensus 26 ~~~l~~l~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L 103 (184)
.++|+.|-+..|.- ........+..++.|..||+++| .++++|..++.+-+|++|+++++.+..+|..+..+..|.+|
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence 33566666665541 11122333555666666666655 34456666666666666666666666666666666666666
Q ss_pred Eccccccc-cchhhhcCCCCCCEEEccCCC
Q psy3785 104 NVSNNMIA-KISDNIGNLTSLLVLNISNNK 132 (184)
Q Consensus 104 ~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~ 132 (184)
++..+..- .+|.....++.|+++.+....
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc
Confidence 66655432 233334446666666665544
No 48
>KOG4658|consensus
Probab=98.23 E-value=1.7e-06 Score=75.14 Aligned_cols=102 Identities=29% Similarity=0.413 Sum_probs=47.4
Q ss_pred CccEEEecCCc--cccCchh-hhCCCCCCEEEcccCc-cccchhhhcCCCCceEEEccccccccchhhhcCCCCCCEEEc
Q psy3785 53 KLKVLNLQYNN--LKGLPDE-IRHLTNLNELALNNNQ-LEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNI 128 (184)
Q Consensus 53 ~L~~L~l~~n~--l~~lp~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l 128 (184)
.|+.|-+.+|. +..++.. |..++.|++||+++|. +..+|..++.+-+|++|++++..+..+|..++++..|.+|++
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNL 625 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecc
Confidence 44444554443 3333322 3445555555555442 445555555555555555555555555555555555555555
Q ss_pred cCCCCC-CcchhhhcCCCCCEEeccCC
Q psy3785 129 SNNKIE-SLPENIGYMKSLTHIDASHN 154 (184)
Q Consensus 129 ~~n~l~-~l~~~~~~~~~L~~l~L~~n 154 (184)
..+.-- .+|.....+.+|+++.+-..
T Consensus 626 ~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 626 EVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccccccccchhhhcccccEEEeecc
Confidence 444322 22333333444555444333
No 49
>KOG1909|consensus
Probab=98.22 E-value=1e-06 Score=67.59 Aligned_cols=132 Identities=19% Similarity=0.321 Sum_probs=57.5
Q ss_pred cCccccEEEeecCCCCCCC---CcccccCCCCccEEEecCCcccc-----CchhhhCCCCCCEEEcccCccc-----cch
Q psy3785 25 ASALLYTYEISSDTGSGES---NMSQSEPVLKLKVLNLQYNNLKG-----LPDEIRHLTNLNELALNNNQLE-----MIN 91 (184)
Q Consensus 25 ~~~~l~~l~l~~~~~~~~~---~~~~~~~l~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~-----~~~ 91 (184)
.-+.|+.+....|+.-... +...+...+.|+.+.+..|.+.. +...+..+++|++|++++|.++ .+.
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 3344555555444433211 23334444455555555554442 2334444555555555555554 112
Q ss_pred hhhcCCCCceEEEcccccccc-----chhhh-cCCCCCCEEEccCCCCCC-----cchhhhcCCCCCEEeccCCCC
Q psy3785 92 EAVYDLPHLYKFNVSNNMIAK-----ISDNI-GNLTSLLVLNISNNKIES-----LPENIGYMKSLTHIDASHNTI 156 (184)
Q Consensus 92 ~~~~~l~~l~~L~l~~n~~~~-----~~~~~-~~~~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~L~~n~l 156 (184)
..+..+++|+.+++++|.+.. +...+ ...|.|+.+.+.+|.++. +...+..-+.|..|+|++|.+
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 233344455555555554441 11111 123455555555555541 111133344455555555555
No 50
>KOG0531|consensus
Probab=98.21 E-value=2.7e-07 Score=74.19 Aligned_cols=128 Identities=29% Similarity=0.371 Sum_probs=100.0
Q ss_pred cCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchhhhcCCCCCCEEEc
Q psy3785 49 EPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNI 128 (184)
Q Consensus 49 ~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l 128 (184)
..+..++.+.+..|.+..+-..+..++++..+++.+|.+..+...+..+.+|+.|++++|.|+.+. .+..++.|..|++
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhhee
Confidence 356677778888888887555678889999999999999988665678999999999999999773 3556667999999
Q ss_pred cCCCCCCcchhhhcCCCCCEEeccCCCCCCCcH-HHhhhhhccccccccccc
Q psy3785 129 SNNKIESLPENIGYMKSLTHIDASHNTISYVPW-KLFSKFHQNRSSRFGCAL 179 (184)
Q Consensus 129 ~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~-~~~~~~~~l~~~~~~~~~ 179 (184)
.+|.++.+.. +..++.|..+++++|.+..+.. . ...+..+..+.++.+.
T Consensus 148 ~~N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 148 SGNLISDISG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred ccCcchhccC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCc
Confidence 9999997765 3448899999999999999766 2 3444555545544443
No 51
>KOG1644|consensus
Probab=98.19 E-value=1.2e-06 Score=62.45 Aligned_cols=121 Identities=21% Similarity=0.290 Sum_probs=88.5
Q ss_pred ccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchhhhc-CCCCCCEEEccCCC
Q psy3785 54 LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIG-NLTSLLVLNISNNK 132 (184)
Q Consensus 54 L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~~-~~~~L~~l~l~~n~ 132 (184)
-+++++.+.++..+..--........+++++|.+..+ ..+..++.|.+|.+.+|+|+.+.+.+. -.+.+..|.+.+|+
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 4456666666554322112234678899999998766 345678999999999999998855444 45779999999999
Q ss_pred CCCcch--hhhcCCCCCEEeccCCCCCCCcH---HHhhhhhccccccc
Q psy3785 133 IESLPE--NIGYMKSLTHIDASHNTISYVPW---KLFSKFHQNRSSRF 175 (184)
Q Consensus 133 l~~l~~--~~~~~~~L~~l~L~~n~l~~~~~---~~~~~~~~l~~~~~ 175 (184)
+.++.+ .+..+|.|+.+.+-+|+++.... .+...+++++++.+
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF 147 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDF 147 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeeh
Confidence 997754 37889999999999999988543 35556666666554
No 52
>KOG2982|consensus
Probab=98.19 E-value=1.8e-07 Score=70.47 Aligned_cols=155 Identities=18% Similarity=0.209 Sum_probs=97.9
Q ss_pred cCccccEEEeecCCCCC-CCCcccccCCCCccEEEecCCccccCchhh-hCCCCCCEEEcccCccc--cchhhhcCCCCc
Q psy3785 25 ASALLYTYEISSDTGSG-ESNMSQSEPVLKLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLE--MINEAVYDLPHL 100 (184)
Q Consensus 25 ~~~~l~~l~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~-~~l~~L~~L~l~~n~l~--~~~~~~~~l~~l 100 (184)
..+.++.+|+..|.+++ +++...+..+|+|+.|+++.|+++..-+.+ ....++++|.+.+..+. .+...+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 46678899999999886 346777888999999999999988632222 35668899999988766 344555578888
Q ss_pred eEEEccccccccc---hhhh---------------------------cCCCCCCEEEccCCCCCCcchh--hhcCCCCCE
Q psy3785 101 YKFNVSNNMIAKI---SDNI---------------------------GNLTSLLVLNISNNKIESLPEN--IGYMKSLTH 148 (184)
Q Consensus 101 ~~L~l~~n~~~~~---~~~~---------------------------~~~~~L~~l~l~~n~l~~l~~~--~~~~~~L~~ 148 (184)
+.|+++.|....+ .... +-.|++..+.++.|.++++... ....|.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 8888888844311 0000 1234444555555555544322 334556667
Q ss_pred EeccCCCCCC-CcHHHhhhhhccccccccccc
Q psy3785 149 IDASHNTISY-VPWKLFSKFHQNRSSRFGCAL 179 (184)
Q Consensus 149 l~L~~n~l~~-~~~~~~~~~~~l~~~~~~~~~ 179 (184)
++|+.|+|.+ -.-......+++.-++...+.
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCc
Confidence 7777777766 223444555555555554443
No 53
>KOG3665|consensus
Probab=98.03 E-value=2.9e-06 Score=72.00 Aligned_cols=125 Identities=20% Similarity=0.233 Sum_probs=98.4
Q ss_pred cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccch--hhhcCCCCceE
Q psy3785 25 ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMIN--EAVYDLPHLYK 102 (184)
Q Consensus 25 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~--~~~~~l~~l~~ 102 (184)
-+|.|+.|.+++-.+...+.-....++|+|..||+++++++.+ .+++++++|++|.+.+=.+...+ ..++.+.+|+.
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 6999999999999988767777888899999999999999988 77899999999998887777443 56788999999
Q ss_pred EEccccccccch-------hhhcCCCCCCEEEccCCCCC-Cc-chhhhcCCCCCEEe
Q psy3785 103 FNVSNNMIAKIS-------DNIGNLTSLLVLNISNNKIE-SL-PENIGYMKSLTHID 150 (184)
Q Consensus 103 L~l~~n~~~~~~-------~~~~~~~~L~~l~l~~n~l~-~l-~~~~~~~~~L~~l~ 150 (184)
|+++.......+ +.-..+|.|+.+|.+++.+. .+ ...+...++|+.+.
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 999987655222 23356899999999998887 22 23344555555443
No 54
>KOG2120|consensus
Probab=97.91 E-value=2.8e-07 Score=69.56 Aligned_cols=84 Identities=19% Similarity=0.117 Sum_probs=55.8
Q ss_pred cccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc-CchhhhCCCCCCEEEcccCc-cccch--hhhcCCCCceEE
Q psy3785 28 LLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQ-LEMIN--EAVYDLPHLYKF 103 (184)
Q Consensus 28 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~-l~~~~--~~~~~l~~l~~L 103 (184)
.++.+|++...+....+-..+..+..|+.+++.++.+.+ +...+.+-..|..++++.+. +++.. --+..+..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 577788887777665555566667777777777777776 45556666677777777763 55322 234456677777
Q ss_pred Eccccccc
Q psy3785 104 NVSNNMIA 111 (184)
Q Consensus 104 ~l~~n~~~ 111 (184)
+++|+...
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 77777644
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.89 E-value=8.9e-06 Score=60.88 Aligned_cols=149 Identities=17% Similarity=0.107 Sum_probs=102.6
Q ss_pred ccccccCCCcCccccEEEeecCCCCCCCCcc----cccCCCCccEEEecCCccccCc-hhh-------------hCCCCC
Q psy3785 16 LVSLVGSASASALLYTYEISSDTGSGESNMS----QSEPVLKLKVLNLQYNNLKGLP-DEI-------------RHLTNL 77 (184)
Q Consensus 16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~lp-~~~-------------~~l~~L 77 (184)
+.-+.+.+.++|+|+.+++|+|-+.. ..|+ .+..-..|..|.+.+|.+..+. ..+ .+-+.|
T Consensus 81 L~~Ll~aLlkcp~l~~v~LSDNAfg~-~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~L 159 (388)
T COG5238 81 LVMLLKALLKCPRLQKVDLSDNAFGS-EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKL 159 (388)
T ss_pred HHHHHHHHhcCCcceeeeccccccCc-ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCc
Confidence 33445566789999999999999876 3333 3444567999999999887532 112 335789
Q ss_pred CEEEcccCccccch-----hhhcCCCCceEEEccccccccc------hhhhcCCCCCCEEEccCCCCCCc-----chhhh
Q psy3785 78 NELALNNNQLEMIN-----EAVYDLPHLYKFNVSNNMIAKI------SDNIGNLTSLLVLNISNNKIESL-----PENIG 141 (184)
Q Consensus 78 ~~L~l~~n~l~~~~-----~~~~~l~~l~~L~l~~n~~~~~------~~~~~~~~~L~~l~l~~n~l~~l-----~~~~~ 141 (184)
+++....|++..-+ ..+.....++.+.+..|.|..- -..+.-+..|..+++.+|-++.. ...+.
T Consensus 160 e~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~ 239 (388)
T COG5238 160 EVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALC 239 (388)
T ss_pred eEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhc
Confidence 99999999887433 2222345788999999988621 12345678899999999988732 33456
Q ss_pred cCCCCCEEeccCCCCCC-CcHHHhh
Q psy3785 142 YMKSLTHIDASHNTISY-VPWKLFS 165 (184)
Q Consensus 142 ~~~~L~~l~L~~n~l~~-~~~~~~~ 165 (184)
.++.|+.+.+.++.++. -...++.
T Consensus 240 ~W~~lrEL~lnDClls~~G~~~v~~ 264 (388)
T COG5238 240 EWNLLRELRLNDCLLSNEGVKSVLR 264 (388)
T ss_pred ccchhhhccccchhhccccHHHHHH
Confidence 67778999998888877 3344443
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.84 E-value=7.3e-05 Score=59.53 Aligned_cols=115 Identities=19% Similarity=0.226 Sum_probs=66.8
Q ss_pred cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCC-ccccCchhhhCCCCCCEEEcccC-ccccchhhhcCCCCceE
Q psy3785 25 ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYN-NLKGLPDEIRHLTNLNELALNNN-QLEMINEAVYDLPHLYK 102 (184)
Q Consensus 25 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~l~~l~~ 102 (184)
.+..++.|++++|.+. .+|. -.++|+.|.+.+| .+..+|..+. .+|+.|.+.+| .+..+|. .|+.
T Consensus 50 ~~~~l~~L~Is~c~L~--sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 50 EARASGRLYIKDCDIE--SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HhcCCCEEEeCCCCCc--ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccce
Confidence 4577888888888544 4452 1235888888775 5555665542 47788888877 5655554 3444
Q ss_pred EEccccc---cccchhhhcCC------------------CCCCEEEccCCCCCCcchhhhcCCCCCEEeccCC
Q psy3785 103 FNVSNNM---IAKISDNIGNL------------------TSLLVLNISNNKIESLPENIGYMKSLTHIDASHN 154 (184)
Q Consensus 103 L~l~~n~---~~~~~~~~~~~------------------~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n 154 (184)
|.+..+. +..+|..+..+ +.|+.|++++|....+|..+. .+|+.|.++.+
T Consensus 117 L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 117 LEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 5555443 23344433221 356677777766554443222 45777777665
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=9.8e-05 Score=58.82 Aligned_cols=112 Identities=19% Similarity=0.280 Sum_probs=75.8
Q ss_pred ccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccC-ccccchhhhcCCCCceEEEcccc-ccccchhhhcCCCCCCE
Q psy3785 48 SEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNN-QLEMINEAVYDLPHLYKFNVSNN-MIAKISDNIGNLTSLLV 125 (184)
Q Consensus 48 ~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~l~~l~~L~l~~n-~~~~~~~~~~~~~~L~~ 125 (184)
+..+..++.|++++|.+..+| .+ ..+|+.|.+.++ .++.+|..+. .+|+.|.+++| .+..+|.. |+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP-~L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP-VL--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC-CC--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cce
Confidence 444688999999999999988 22 237999999986 5777776542 58999999998 56666653 555
Q ss_pred EEccCCC---CCCcchhhhcC------------------CCCCEEeccCCCCCCCcHHHhhhhhcc
Q psy3785 126 LNISNNK---IESLPENIGYM------------------KSLTHIDASHNTISYVPWKLFSKFHQN 170 (184)
Q Consensus 126 l~l~~n~---l~~l~~~~~~~------------------~~L~~l~L~~n~l~~~~~~~~~~~~~l 170 (184)
|++..+. +..+|..+..+ ++|+.|+++++....+|..+-..+..|
T Consensus 117 L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L 182 (426)
T PRK15386 117 LEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSI 182 (426)
T ss_pred EEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCcccccccCcEE
Confidence 5665554 33555443222 368889999888766554443333333
No 58
>KOG2739|consensus
Probab=97.71 E-value=1.9e-05 Score=58.40 Aligned_cols=108 Identities=22% Similarity=0.323 Sum_probs=67.4
Q ss_pred CcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccC--ccc-cchhhhcCCCCceEEEccccccccch--hhhc
Q psy3785 44 NMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNN--QLE-MINEAVYDLPHLYKFNVSNNMIAKIS--DNIG 118 (184)
Q Consensus 44 ~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n--~l~-~~~~~~~~l~~l~~L~l~~n~~~~~~--~~~~ 118 (184)
+....-.+..++.+++.+..++.+ .++..+++|+.|.++.| ++. .++..+-.+++++++++++|++..+. ..+.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred cccccccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh
Confidence 444444456677777777777764 23566778888888888 444 34333344588888888888877432 3456
Q ss_pred CCCCCCEEEccCCCCCCcch----hhhcCCCCCEEecc
Q psy3785 119 NLTSLLVLNISNNKIESLPE----NIGYMKSLTHIDAS 152 (184)
Q Consensus 119 ~~~~L~~l~l~~n~l~~l~~----~~~~~~~L~~l~L~ 152 (184)
.+++|..+++..|..+.+.. .+..+++|.+++-.
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 66777788888877765421 23445555555443
No 59
>KOG2120|consensus
Probab=97.58 E-value=5e-06 Score=62.92 Aligned_cols=130 Identities=18% Similarity=0.143 Sum_probs=81.2
Q ss_pred CcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCC-cccc--CchhhhCCCCCCEEEcccCccc--cchhhhcC-C
Q psy3785 24 SASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYN-NLKG--LPDEIRHLTNLNELALNNNQLE--MINEAVYD-L 97 (184)
Q Consensus 24 ~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~--lp~~~~~l~~L~~L~l~~n~l~--~~~~~~~~-l 97 (184)
+.+.+|+-+.+.++...+ .+...+....+|..++++.+ .+++ +.--+.+++.|+.|++++|.+. .+...+.. -
T Consensus 207 s~C~kLk~lSlEg~~LdD-~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDD-PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS 285 (419)
T ss_pred HHHHhhhhccccccccCc-HHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence 456777777777777655 56666777788888888777 4554 2223566778888888888655 22222332 3
Q ss_pred CCceEEEccccccc----cchhhhcCCCCCCEEEccCCC-CC-CcchhhhcCCCCCEEeccCC
Q psy3785 98 PHLYKFNVSNNMIA----KISDNIGNLTSLLVLNISNNK-IE-SLPENIGYMKSLTHIDASHN 154 (184)
Q Consensus 98 ~~l~~L~l~~n~~~----~~~~~~~~~~~L~~l~l~~n~-l~-~l~~~~~~~~~L~~l~L~~n 154 (184)
++++.|++++++-. .+..-...|+.+.+||+++|. ++ ..-..+...+.|++++++.+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRC 348 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRC 348 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhh
Confidence 46777777776532 222234567777778777763 33 33344566666777776665
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.40 E-value=0.0013 Score=43.75 Aligned_cols=118 Identities=19% Similarity=0.278 Sum_probs=54.1
Q ss_pred cccCCCCccEEEecCCccccCch-hhhCCCCCCEEEcccCccccchh-hhcCCCCceEEEccccccccch-hhhcCCCCC
Q psy3785 47 QSEPVLKLKVLNLQYNNLKGLPD-EIRHLTNLNELALNNNQLEMINE-AVYDLPHLYKFNVSNNMIAKIS-DNIGNLTSL 123 (184)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L 123 (184)
.+....+|+.+.+.. .+..++. .|..+++++.+.+..+ +..++. .+..+.+++.+.+.+ .+..++ ..+..++.+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344556777777764 4555543 3566667777777664 666653 344555777777765 444443 345667777
Q ss_pred CEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCCCcHHHhhhhhcc
Q psy3785 124 LVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQN 170 (184)
Q Consensus 124 ~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l 170 (184)
+.+.+..+ ++.++.. +... .++.+.+.. .+..++...|..++.|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 88777664 5555543 3444 777777665 5666666666655444
No 61
>KOG2982|consensus
Probab=97.35 E-value=0.00016 Score=54.96 Aligned_cols=62 Identities=23% Similarity=0.317 Sum_probs=43.2
Q ss_pred CCCceEEEccccccccch--hhhcCCCCCCEEEccCCCCCCcc--hhhhcCCCCCEEeccCCCCCC
Q psy3785 97 LPHLYKFNVSNNMIAKIS--DNIGNLTSLLVLNISNNKIESLP--ENIGYMKSLTHIDASHNTISY 158 (184)
Q Consensus 97 l~~l~~L~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~~l~--~~~~~~~~L~~l~L~~n~l~~ 158 (184)
++++..+-+.+|.+.... ...-..+.+..++++.+++.++. +++...+.+..+.++++++..
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 566666667777665442 23445566677888888888664 457788888888888888765
No 62
>KOG2739|consensus
Probab=97.33 E-value=0.00013 Score=54.10 Aligned_cols=102 Identities=23% Similarity=0.284 Sum_probs=72.4
Q ss_pred hCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccc---cchhhhcCCCCCCEEEccCCCCCCcc--hhhhcCCCC
Q psy3785 72 RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA---KISDNIGNLTSLLVLNISNNKIESLP--ENIGYMKSL 146 (184)
Q Consensus 72 ~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~---~~~~~~~~~~~L~~l~l~~n~l~~l~--~~~~~~~~L 146 (184)
..+..++.+.+.+..++.+ ..+..+++|++|.++.|.+. .++.-...++.|+++++++|+++.+. ..+..+++|
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 3445666667777776654 33456889999999999443 33333455699999999999998542 235667788
Q ss_pred CEEeccCCCCCCC---cHHHhhhhhcccccc
Q psy3785 147 THIDASHNTISYV---PWKLFSKFHQNRSSR 174 (184)
Q Consensus 147 ~~l~L~~n~l~~~---~~~~~~~~~~l~~~~ 174 (184)
..+++.++..+.+ ...+|..+++|+++.
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 8999988877773 346778888877543
No 63
>KOG2123|consensus
Probab=97.32 E-value=2.2e-05 Score=59.03 Aligned_cols=98 Identities=19% Similarity=0.247 Sum_probs=69.9
Q ss_pred CCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccch--hhhcCCCCCCEEEc
Q psy3785 51 VLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKIS--DNIGNLTSLLVLNI 128 (184)
Q Consensus 51 l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~--~~~~~~~~L~~l~l 128 (184)
+.+++.|++.+|.+.++. -..+++.|++|.|+-|.|+.+ ..+..+.+|+.|.+..|.|..+. ..+.+++.|+.|+|
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 456777888888877752 236677888888888888766 33456778888888888887663 35788889999999
Q ss_pred cCCCCCCc-c-----hhhhcCCCCCEEe
Q psy3785 129 SNNKIESL-P-----ENIGYMKSLTHID 150 (184)
Q Consensus 129 ~~n~l~~l-~-----~~~~~~~~L~~l~ 150 (184)
..|.+..- + ..+..+|+|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 88887622 2 2356677777765
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.69 E-value=0.014 Score=38.71 Aligned_cols=118 Identities=20% Similarity=0.289 Sum_probs=59.7
Q ss_pred CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hhCCCCCCEEEcccCccccchhh-hcCCCC
Q psy3785 22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINEA-VYDLPH 99 (184)
Q Consensus 22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~ 99 (184)
.+....+|+.+.+.. .... .-...+..+..++.+.+.++ +..++.. +....+++.+.+.. .+..++.. +..+.+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~-I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKK-IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--E-E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeE-eChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 345666788888764 2221 33455666778999999875 6766543 66676899999876 55556544 445888
Q ss_pred ceEEEccccccccch-hhhcCCCCCCEEEccCCCCCCcchh-hhcCCCC
Q psy3785 100 LYKFNVSNNMIAKIS-DNIGNLTSLLVLNISNNKIESLPEN-IGYMKSL 146 (184)
Q Consensus 100 l~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L 146 (184)
++.+.+..+ +..++ ..+.++ .++.+.+.. .++.++.. +..+++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 999999775 66664 356666 888888765 45555433 4445444
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.58 E-value=0.0056 Score=46.31 Aligned_cols=113 Identities=27% Similarity=0.295 Sum_probs=70.3
Q ss_pred cccCCCCccEEEecCCcccc-Cc----hhhhCCCCCCEEEcccCccccc-----hh---------hhcCCCCceEEEccc
Q psy3785 47 QSEPVLKLKVLNLQYNNLKG-LP----DEIRHLTNLNELALNNNQLEMI-----NE---------AVYDLPHLYKFNVSN 107 (184)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~~-lp----~~~~~l~~L~~L~l~~n~l~~~-----~~---------~~~~l~~l~~L~l~~ 107 (184)
.+..+|+|+..++++|-++. .| +.+.+.+.+..|.+++|.+..+ .. ....-+.|+.+....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 35556777777777776664 22 3345566677777777765522 11 122346677777777
Q ss_pred cccccchh-----hhcCCCCCCEEEccCCCCCC--cch----hhhcCCCCCEEeccCCCCCCC
Q psy3785 108 NMIAKISD-----NIGNLTSLLVLNISNNKIES--LPE----NIGYMKSLTHIDASHNTISYV 159 (184)
Q Consensus 108 n~~~~~~~-----~~~~~~~L~~l~l~~n~l~~--l~~----~~~~~~~L~~l~L~~n~l~~~ 159 (184)
|++..-|. .+..-..++.+.+..|.|+. +.. .+..+.+|..+|+.+|.++..
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~ 229 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE 229 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhh
Confidence 77653221 12222467778888888772 221 256788999999999999874
No 66
>KOG2123|consensus
Probab=96.47 E-value=0.00022 Score=53.72 Aligned_cols=98 Identities=23% Similarity=0.229 Sum_probs=76.4
Q ss_pred CCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcch--hhhcCCCCCEEe
Q psy3785 73 HLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPE--NIGYMKSLTHID 150 (184)
Q Consensus 73 ~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~--~~~~~~~L~~l~ 150 (184)
.+...+.|+..++.++.+. ....|+.++.|.++-|.|+.+ ..+..|.+|+.+.|..|.|..+.. .+.++|+|+.|.
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3557788899999988652 234688999999999999988 448889999999999999987754 378899999999
Q ss_pred ccCCCCCC--Cc---HHHhhhhhcccc
Q psy3785 151 ASHNTISY--VP---WKLFSKFHQNRS 172 (184)
Q Consensus 151 L~~n~l~~--~~---~~~~~~~~~l~~ 172 (184)
|..|+=.+ -+ ..+...+++|+-
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkK 121 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKK 121 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchh
Confidence 99998655 22 245566666653
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.45 E-value=0.0015 Score=29.56 Aligned_cols=18 Identities=39% Similarity=0.643 Sum_probs=8.8
Q ss_pred ccEEEecCCccccCchhh
Q psy3785 54 LKVLNLQYNNLKGLPDEI 71 (184)
Q Consensus 54 L~~L~l~~n~l~~lp~~~ 71 (184)
|++|++++|.++.+|+.|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 445555555555444443
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.99 E-value=0.0043 Score=28.05 Aligned_cols=14 Identities=36% Similarity=0.413 Sum_probs=6.1
Q ss_pred CEEEcccCccccch
Q psy3785 78 NELALNNNQLEMIN 91 (184)
Q Consensus 78 ~~L~l~~n~l~~~~ 91 (184)
++|++++|+++.+|
T Consensus 3 ~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 3 EYLDLSGNNLTSIP 16 (22)
T ss_dssp SEEEETSSEESEEG
T ss_pred cEEECCCCcCEeCC
Confidence 44444444444443
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.61 E-value=0.0087 Score=25.22 Aligned_cols=12 Identities=50% Similarity=0.717 Sum_probs=3.7
Q ss_pred CCEEEcccCccc
Q psy3785 77 LNELALNNNQLE 88 (184)
Q Consensus 77 L~~L~l~~n~l~ 88 (184)
|+.|++++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 334444444433
No 70
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.56 E-value=0.017 Score=27.10 Aligned_cols=22 Identities=32% Similarity=0.461 Sum_probs=16.6
Q ss_pred CCCCEEeccCCCCCCCcHHHhh
Q psy3785 144 KSLTHIDASHNTISYVPWKLFS 165 (184)
Q Consensus 144 ~~L~~l~L~~n~l~~~~~~~~~ 165 (184)
+.|+.+++++|.|+.+|..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 5677888888888888777654
No 71
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.56 E-value=0.017 Score=27.10 Aligned_cols=22 Identities=32% Similarity=0.461 Sum_probs=16.6
Q ss_pred CCCCEEeccCCCCCCCcHHHhh
Q psy3785 144 KSLTHIDASHNTISYVPWKLFS 165 (184)
Q Consensus 144 ~~L~~l~L~~n~l~~~~~~~~~ 165 (184)
+.|+.+++++|.|+.+|..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 5677888888888888777654
No 72
>KOG0473|consensus
Probab=94.90 E-value=0.00039 Score=51.20 Aligned_cols=86 Identities=14% Similarity=0.171 Sum_probs=45.8
Q ss_pred hhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEe
Q psy3785 71 IRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHID 150 (184)
Q Consensus 71 ~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~ 150 (184)
+......+.||++.|++..+...+..+..+..++++.|.+..+|..++....+..+++..|.....|...+..+.+++.+
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 33344455555555555444444444445555555555555555555555555555555555555555555555556665
Q ss_pred ccCCCC
Q psy3785 151 ASHNTI 156 (184)
Q Consensus 151 L~~n~l 156 (184)
+.+|.+
T Consensus 118 ~k~~~~ 123 (326)
T KOG0473|consen 118 QKKTEF 123 (326)
T ss_pred hccCcc
Confidence 555554
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.37 E-value=0.043 Score=25.62 Aligned_cols=19 Identities=47% Similarity=0.622 Sum_probs=10.3
Q ss_pred CCCCEEEcccCccccchhh
Q psy3785 75 TNLNELALNNNQLEMINEA 93 (184)
Q Consensus 75 ~~L~~L~l~~n~l~~~~~~ 93 (184)
++|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555543
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.37 E-value=0.043 Score=25.62 Aligned_cols=19 Identities=47% Similarity=0.622 Sum_probs=10.3
Q ss_pred CCCCEEEcccCccccchhh
Q psy3785 75 TNLNELALNNNQLEMINEA 93 (184)
Q Consensus 75 ~~L~~L~l~~n~l~~~~~~ 93 (184)
++|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555543
No 75
>KOG0473|consensus
Probab=93.50 E-value=0.0012 Score=48.66 Aligned_cols=87 Identities=16% Similarity=0.133 Sum_probs=56.0
Q ss_pred ccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchhhhcCCCCCCEEE
Q psy3785 48 SEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLN 127 (184)
Q Consensus 48 ~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~ 127 (184)
+..+...+.||++.|++-.+...++.++.+..++++.|.+..+|..+.....+..+.+-.|..+..|..++..+.++.++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 34455666667766666655555666666666677777666666666666666666666666666666666666777766
Q ss_pred ccCCCCC
Q psy3785 128 ISNNKIE 134 (184)
Q Consensus 128 l~~n~l~ 134 (184)
+..|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 6666544
No 76
>KOG4308|consensus
Probab=92.07 E-value=0.003 Score=51.77 Aligned_cols=140 Identities=21% Similarity=0.237 Sum_probs=76.6
Q ss_pred cccCCCcCccccEEEeecCCCCCCC---CcccccCC-CCccEEEecCCcccc-----CchhhhCCCCCCEEEcccCccc-
Q psy3785 19 LVGSASASALLYTYEISSDTGSGES---NMSQSEPV-LKLKVLNLQYNNLKG-----LPDEIRHLTNLNELALNNNQLE- 88 (184)
Q Consensus 19 ~~~~~~~~~~l~~l~l~~~~~~~~~---~~~~~~~l-~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~- 88 (184)
+...+...+.|..++++.|.+.+.. +...+... ..+++|.+..|.++. +...+....+++.+++..|.+.
T Consensus 107 l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~ 186 (478)
T KOG4308|consen 107 LAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIE 186 (478)
T ss_pred HHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccch
Confidence 3344456777777888888776533 22223332 446667777776664 3455555667777777777653
Q ss_pred ----cchhhh----cCCCCceEEEccccccccc-----hhhhcCCCC-CCEEEccCCCCCCc-----chhhhcC-CCCCE
Q psy3785 89 ----MINEAV----YDLPHLYKFNVSNNMIAKI-----SDNIGNLTS-LLVLNISNNKIESL-----PENIGYM-KSLTH 148 (184)
Q Consensus 89 ----~~~~~~----~~l~~l~~L~l~~n~~~~~-----~~~~~~~~~-L~~l~l~~n~l~~l-----~~~~~~~-~~L~~ 148 (184)
.++..+ ....++++|++..+.++.. ...+...+. +..+++..|.+.+. .+.+... +.++.
T Consensus 187 ~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~ 266 (478)
T KOG4308|consen 187 LGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRV 266 (478)
T ss_pred hhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhh
Confidence 112222 2355677777777776521 112333333 44466666665522 1223333 45566
Q ss_pred EeccCCCCCC
Q psy3785 149 IDASHNTISY 158 (184)
Q Consensus 149 l~L~~n~l~~ 158 (184)
++++.|.|+.
T Consensus 267 l~l~~nsi~~ 276 (478)
T KOG4308|consen 267 LDLSRNSITE 276 (478)
T ss_pred hhhhcCCccc
Confidence 6677776665
No 77
>KOG4308|consensus
Probab=91.64 E-value=0.0036 Score=51.36 Aligned_cols=132 Identities=24% Similarity=0.301 Sum_probs=64.3
Q ss_pred ccccEEEeecCCCCCCC---CcccccCCCCccEEEecCCcccc-----Cchhhh----CCCCCCEEEcccCccccc----
Q psy3785 27 ALLYTYEISSDTGSGES---NMSQSEPVLKLKVLNLQYNNLKG-----LPDEIR----HLTNLNELALNNNQLEMI---- 90 (184)
Q Consensus 27 ~~l~~l~l~~~~~~~~~---~~~~~~~l~~L~~L~l~~n~l~~-----lp~~~~----~l~~L~~L~l~~n~l~~~---- 90 (184)
..++++++..|..+... +...+.....++.++++.|.+.. ++..+. ...++++|.+.+|.++..
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~ 223 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL 223 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH
Confidence 34455555555544322 33344445556666666665532 222333 244566666666665521
Q ss_pred -hhhhcCCCC-ceEEEccccccccc-----hhhhcCC-CCCCEEEccCCCCCC-----cchhhhcCCCCCEEeccCCCCC
Q psy3785 91 -NEAVYDLPH-LYKFNVSNNMIAKI-----SDNIGNL-TSLLVLNISNNKIES-----LPENIGYMKSLTHIDASHNTIS 157 (184)
Q Consensus 91 -~~~~~~l~~-l~~L~l~~n~~~~~-----~~~~~~~-~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~L~~n~l~ 157 (184)
...+...+. +..+++..|.+... .+.+..+ ++++.+++..|.+++ +...+..++.++.+.+++|.+.
T Consensus 224 l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 224 LDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 122222333 44466666655521 2233333 455666666666652 2233445556666666666665
Q ss_pred C
Q psy3785 158 Y 158 (184)
Q Consensus 158 ~ 158 (184)
.
T Consensus 304 ~ 304 (478)
T KOG4308|consen 304 D 304 (478)
T ss_pred c
Confidence 5
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=87.67 E-value=0.36 Score=22.70 Aligned_cols=17 Identities=47% Similarity=0.728 Sum_probs=9.6
Q ss_pred CccEEEecCCccccCch
Q psy3785 53 KLKVLNLQYNNLKGLPD 69 (184)
Q Consensus 53 ~L~~L~l~~n~l~~lp~ 69 (184)
+|++|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45556666666655553
No 79
>KOG1947|consensus
Probab=87.57 E-value=0.25 Score=40.10 Aligned_cols=58 Identities=22% Similarity=0.246 Sum_probs=24.8
Q ss_pred CCCCCEEEcccCc-cccch-hhhc-CCCCceEEEccccc-cc--cchhhhcCCCCCCEEEccCC
Q psy3785 74 LTNLNELALNNNQ-LEMIN-EAVY-DLPHLYKFNVSNNM-IA--KISDNIGNLTSLLVLNISNN 131 (184)
Q Consensus 74 l~~L~~L~l~~n~-l~~~~-~~~~-~l~~l~~L~l~~n~-~~--~~~~~~~~~~~L~~l~l~~n 131 (184)
+..++.++++++. ++... ..+. .+++|+.|.+..+. ++ .+......++.|+.++++++
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 3445555555554 33211 1111 24455555544443 33 12222334455555555544
No 80
>KOG1947|consensus
Probab=85.39 E-value=0.59 Score=37.97 Aligned_cols=108 Identities=21% Similarity=0.136 Sum_probs=72.3
Q ss_pred CCCCccEEEecCC-cccc--CchhhhCCCCCCEEEcccC--ccccch----hhhcCCCCceEEEccccc-cccc--hhhh
Q psy3785 50 PVLKLKVLNLQYN-NLKG--LPDEIRHLTNLNELALNNN--QLEMIN----EAVYDLPHLYKFNVSNNM-IAKI--SDNI 117 (184)
Q Consensus 50 ~l~~L~~L~l~~n-~l~~--lp~~~~~l~~L~~L~l~~n--~l~~~~----~~~~~l~~l~~L~l~~n~-~~~~--~~~~ 117 (184)
..+.++.+.+.++ .+.. +-......+.|+.|+++++ .++..+ .....+.+++.++++++. ++.. ..-.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3678888888877 4444 3344566788999999873 222111 222245788999999887 6633 2223
Q ss_pred cCCCCCCEEEccCCC-CC--CcchhhhcCCCCCEEeccCCCCC
Q psy3785 118 GNLTSLLVLNISNNK-IE--SLPENIGYMKSLTHIDASHNTIS 157 (184)
Q Consensus 118 ~~~~~L~~l~l~~n~-l~--~l~~~~~~~~~L~~l~L~~n~l~ 157 (184)
..|+.|+.+.+.++. ++ .+......++.|+.++++.+...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 348899999987776 55 44455677889999999988553
No 81
>KOG3864|consensus
Probab=82.86 E-value=0.26 Score=35.78 Aligned_cols=80 Identities=18% Similarity=0.217 Sum_probs=49.7
Q ss_pred CCccEEEecCCccccC-chhhhCCCCCCEEEcccCc-cccch-hhhc-CCCCceEEEccccc-cccch-hhhcCCCCCCE
Q psy3785 52 LKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQ-LEMIN-EAVY-DLPHLYKFNVSNNM-IAKIS-DNIGNLTSLLV 125 (184)
Q Consensus 52 ~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~-l~~~~-~~~~-~l~~l~~L~l~~n~-~~~~~-~~~~~~~~L~~ 125 (184)
..++.++-+++.+... -+.+.+++.++.|.+.+|. +..+. ..+. ..++|+.|++++|. ||.-. ..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 3466677777776653 2456777778888877773 54332 2233 35688888888774 66432 45666677777
Q ss_pred EEccCC
Q psy3785 126 LNISNN 131 (184)
Q Consensus 126 l~l~~n 131 (184)
+.+.+-
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 666543
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=81.23 E-value=0.78 Score=20.71 Aligned_cols=13 Identities=54% Similarity=0.774 Sum_probs=4.9
Q ss_pred CCCEEEcccCccc
Q psy3785 76 NLNELALNNNQLE 88 (184)
Q Consensus 76 ~L~~L~l~~n~l~ 88 (184)
+|++|++++|.++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 83
>KOG3864|consensus
Probab=81.10 E-value=0.69 Score=33.63 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=34.0
Q ss_pred CCCEEEcccCccccch-hhhcCCCCceEEEccccc-cccc-hhhh-cCCCCCCEEEccCC-CCCCcc-hhhhcCCCCCEE
Q psy3785 76 NLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNM-IAKI-SDNI-GNLTSLLVLNISNN-KIESLP-ENIGYMKSLTHI 149 (184)
Q Consensus 76 ~L~~L~l~~n~l~~~~-~~~~~l~~l~~L~l~~n~-~~~~-~~~~-~~~~~L~~l~l~~n-~l~~l~-~~~~~~~~L~~l 149 (184)
.++.++-+++.|.... ..+.+++.++.+.+.++. +..- -+.+ +-.++|+.|++++| .|++-. ..+..+++|+.+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4455555555554332 334445555555555543 2210 1111 12355666666655 344221 124445555555
Q ss_pred ecc
Q psy3785 150 DAS 152 (184)
Q Consensus 150 ~L~ 152 (184)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 443
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=80.42 E-value=1.7 Score=20.40 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=11.3
Q ss_pred CCCCEEeccCCCCCCC
Q psy3785 144 KSLTHIDASHNTISYV 159 (184)
Q Consensus 144 ~~L~~l~L~~n~l~~~ 159 (184)
++|+.++++.|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4677777777777664
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=73.32 E-value=3.5 Score=19.46 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=12.4
Q ss_pred CCCCEEeccCCCCCC
Q psy3785 144 KSLTHIDASHNTISY 158 (184)
Q Consensus 144 ~~L~~l~L~~n~l~~ 158 (184)
+.|+.++|++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 568899999998865
No 86
>KOG4341|consensus
Probab=71.51 E-value=2.7 Score=34.08 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=14.0
Q ss_pred CCCCEEEccCCCCC--CcchhhhcCCCCCEEeccCC
Q psy3785 121 TSLLVLNISNNKIE--SLPENIGYMKSLTHIDASHN 154 (184)
Q Consensus 121 ~~L~~l~l~~n~l~--~l~~~~~~~~~L~~l~L~~n 154 (184)
..+..+.+.++... ..-..+..++.|+.+++=+.
T Consensus 401 ~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 401 EGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred cccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 34444455444433 11122344445544444333
No 87
>KOG3763|consensus
Probab=71.19 E-value=2.7 Score=35.11 Aligned_cols=62 Identities=23% Similarity=0.288 Sum_probs=37.9
Q ss_pred CCCCceEEEccccccccc---hhhhcCCCCCCEEEccCC--CCCCcchhhhc--CCCCCEEeccCCCCCC
Q psy3785 96 DLPHLYKFNVSNNMIAKI---SDNIGNLTSLLVLNISNN--KIESLPENIGY--MKSLTHIDASHNTISY 158 (184)
Q Consensus 96 ~l~~l~~L~l~~n~~~~~---~~~~~~~~~L~~l~l~~n--~l~~l~~~~~~--~~~L~~l~L~~n~l~~ 158 (184)
+.+.+..+++++|++..+ ..-....|++..|+|++| .+..- .++.. ...|+.+-+.+|++..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCcccc
Confidence 356677778888877643 222345577888888888 33322 12222 2346778888888876
No 88
>KOG3763|consensus
Probab=61.31 E-value=6.9 Score=32.86 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=16.2
Q ss_pred CCCCCEEEcccCccccch--hhhc-CCCCceEEEcccc
Q psy3785 74 LTNLNELALNNNQLEMIN--EAVY-DLPHLYKFNVSNN 108 (184)
Q Consensus 74 l~~L~~L~l~~n~l~~~~--~~~~-~l~~l~~L~l~~n 108 (184)
.+.+..+.+++|++..+. ..+. ..+++.+|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 444555555555544332 1111 3455555555555
No 89
>KOG4341|consensus
Probab=60.10 E-value=9.8 Score=31.01 Aligned_cols=125 Identities=13% Similarity=0.104 Sum_probs=66.3
Q ss_pred cCccccEEEeecCCCCC-CCCcccccCCCCccEEEecCCcccc---CchhhhCCCCCCEEEcccCc-cccc-----hhhh
Q psy3785 25 ASALLYTYEISSDTGSG-ESNMSQSEPVLKLKVLNLQYNNLKG---LPDEIRHLTNLNELALNNNQ-LEMI-----NEAV 94 (184)
Q Consensus 25 ~~~~l~~l~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~---lp~~~~~l~~L~~L~l~~n~-l~~~-----~~~~ 94 (184)
+.++|+.+.+..++... ......-.+.+.|+.+++.++.... +-.--.+.+.++.+.++.+. ++.- ....
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 34566666666555322 1111112234566666666664332 11112345667777777664 3321 1222
Q ss_pred cCCCCceEEEccccccc--cchhhhcCCCCCCEEEccCCC-CC--CcchhhhcCCCCCEE
Q psy3785 95 YDLPHLYKFNVSNNMIA--KISDNIGNLTSLLVLNISNNK-IE--SLPENIGYMKSLTHI 149 (184)
Q Consensus 95 ~~l~~l~~L~l~~n~~~--~~~~~~~~~~~L~~l~l~~n~-l~--~l~~~~~~~~~L~~l 149 (184)
..+..+..+-+.++... ..-+.+..++.|+.+++-++. ++ .+.....++|++.+.
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 24566777777777643 223457788889888887763 33 344555667776554
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=31.93 E-value=34 Score=34.66 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=14.2
Q ss_pred eecCCCCCCCCcccccCCCCccEEEecCCccc
Q psy3785 34 ISSDTGSGESNMSQSEPVLKLKVLNLQYNNLK 65 (184)
Q Consensus 34 l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 65 (184)
|++|++.. ..+..+..+++|+.|+|.+|.+.
T Consensus 2 LSnN~Lst-Lp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 2 ISNNKIST-IEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCcCCc-cChHHhccCCCceEEEeeCCccc
Confidence 44444442 22334444555555555555433
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=30.71 E-value=40 Score=15.21 Aligned_cols=11 Identities=27% Similarity=0.326 Sum_probs=5.3
Q ss_pred CCCCEEEccCC
Q psy3785 121 TSLLVLNISNN 131 (184)
Q Consensus 121 ~~L~~l~l~~n 131 (184)
+.|+.++++++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34455555444
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.38 E-value=62 Score=33.04 Aligned_cols=31 Identities=26% Similarity=0.503 Sum_probs=25.2
Q ss_pred EecCCccccCchh-hhCCCCCCEEEcccCccc
Q psy3785 58 NLQYNNLKGLPDE-IRHLTNLNELALNNNQLE 88 (184)
Q Consensus 58 ~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~ 88 (184)
+|++|.|+.+|.. |..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 4788999988765 677889999999998765
Done!