Query psy3785
Match_columns 184
No_of_seqs 121 out of 1578
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 17:21:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3785.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3785hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.8 7.1E-21 2.4E-25 146.7 12.1 141 16-158 93-243 (328)
2 3m19_A Variable lymphocyte rec 99.8 5.9E-20 2E-24 136.3 14.7 163 15-180 25-191 (251)
3 1ozn_A Reticulon 4 receptor; N 99.8 1.7E-19 5.7E-24 136.1 15.7 161 20-180 73-237 (285)
4 4fcg_A Uncharacterized protein 99.8 4.5E-20 1.5E-24 142.2 12.5 139 18-158 118-267 (328)
5 2o6q_A Variable lymphocyte rec 99.8 4.6E-19 1.6E-23 132.9 15.8 156 22-178 56-215 (270)
6 1p9a_G Platelet glycoprotein I 99.8 9.3E-20 3.2E-24 138.2 11.4 152 21-176 49-203 (290)
7 2o6q_A Variable lymphocyte rec 99.8 6.2E-19 2.1E-23 132.1 15.0 163 15-180 27-193 (270)
8 1ozn_A Reticulon 4 receptor; N 99.8 5.4E-19 1.9E-23 133.3 13.1 159 21-180 50-213 (285)
9 1p9a_G Platelet glycoprotein I 99.8 6.7E-19 2.3E-23 133.4 13.4 151 27-179 31-183 (290)
10 1ogq_A PGIP-2, polygalacturona 99.8 1.2E-19 3.9E-24 139.0 9.1 158 19-178 68-231 (313)
11 3e6j_A Variable lymphocyte rec 99.8 1.5E-18 5.3E-23 127.1 14.2 142 15-159 30-174 (229)
12 3rfs_A Internalin B, repeat mo 99.8 1.2E-18 4.2E-23 130.7 13.9 156 21-179 57-216 (272)
13 1h6u_A Internalin H; cell adhe 99.8 4.2E-18 1.4E-22 130.0 16.0 149 22-179 58-206 (308)
14 1ogq_A PGIP-2, polygalacturona 99.8 4.2E-19 1.4E-23 135.9 10.1 159 18-178 92-278 (313)
15 3m19_A Variable lymphocyte rec 99.8 4.1E-18 1.4E-22 126.4 14.8 138 21-159 53-194 (251)
16 3rgz_A Protein brassinosteroid 99.8 1.2E-18 4.3E-23 147.6 13.3 159 19-179 482-715 (768)
17 4ezg_A Putative uncharacterize 99.8 2.8E-18 9.6E-23 122.9 13.0 151 24-181 41-194 (197)
18 2z62_A TOLL-like receptor 4, v 99.8 7.6E-19 2.6E-23 131.9 10.5 157 22-179 47-235 (276)
19 2xwt_C Thyrotropin receptor; s 99.8 4.4E-19 1.5E-23 130.6 8.3 157 22-180 50-217 (239)
20 1h6u_A Internalin H; cell adhe 99.8 5.8E-18 2E-22 129.3 14.7 155 16-180 75-229 (308)
21 2ell_A Acidic leucine-rich nuc 99.8 1.4E-18 4.7E-23 121.4 10.4 137 24-161 21-164 (168)
22 3e6j_A Variable lymphocyte rec 99.8 5.9E-18 2E-22 124.0 13.7 147 29-179 21-170 (229)
23 1h6t_A Internalin B; cell adhe 99.8 6.9E-18 2.4E-22 127.9 14.3 150 22-180 63-212 (291)
24 4g8a_A TOLL-like receptor 4; l 99.8 3.9E-18 1.3E-22 140.6 14.0 154 15-171 42-200 (635)
25 2v9t_B SLIT homolog 2 protein 99.8 3.8E-18 1.3E-22 124.4 12.4 142 14-158 21-166 (220)
26 2xot_A Amphoterin-induced prot 99.8 6.7E-18 2.3E-22 131.6 14.5 152 15-169 29-188 (361)
27 2z62_A TOLL-like receptor 4, v 99.8 4.8E-18 1.7E-22 127.5 13.1 153 16-171 19-176 (276)
28 3rgz_A Protein brassinosteroid 99.8 6.3E-18 2.2E-22 143.3 14.9 162 18-181 457-693 (768)
29 2z66_A Variable lymphocyte rec 99.8 1.4E-18 4.9E-23 132.1 9.6 160 18-177 92-257 (306)
30 2z80_A TOLL-like receptor 2, v 99.8 1.2E-18 4.1E-23 135.1 9.3 158 22-180 71-234 (353)
31 1xeu_A Internalin C; cellular 99.8 3.8E-18 1.3E-22 127.6 11.6 149 22-180 36-184 (263)
32 4ecn_A Leucine-rich repeat pro 99.8 1.2E-18 4.1E-23 148.9 9.8 164 15-180 436-631 (876)
33 4eco_A Uncharacterized protein 99.8 3.4E-19 1.1E-23 148.3 6.1 162 15-179 194-388 (636)
34 3zyi_A Leucine-rich repeat-con 99.8 7.1E-18 2.4E-22 134.9 13.4 158 21-179 93-277 (452)
35 3zyi_A Leucine-rich repeat-con 99.8 9.6E-18 3.3E-22 134.2 13.8 156 21-178 117-300 (452)
36 4eco_A Uncharacterized protein 99.8 4.6E-19 1.6E-23 147.4 6.3 160 19-180 239-414 (636)
37 2v70_A SLIT-2, SLIT homolog 2 99.8 8.7E-18 3E-22 122.5 12.3 142 15-158 22-167 (220)
38 3zyj_A Leucine-rich repeat-con 99.8 7.1E-18 2.4E-22 134.5 12.5 137 21-159 82-222 (440)
39 3zyj_A Leucine-rich repeat-con 99.8 9.9E-18 3.4E-22 133.7 13.3 155 21-177 106-288 (440)
40 4ezg_A Putative uncharacterize 99.8 1.9E-17 6.4E-22 118.6 13.3 137 16-158 56-195 (197)
41 3rfs_A Internalin B, repeat mo 99.8 1.5E-17 5.2E-22 124.7 13.3 155 23-181 37-194 (272)
42 2v9t_B SLIT homolog 2 protein 99.8 1.5E-17 5.2E-22 121.2 12.7 147 30-180 14-164 (220)
43 4ecn_A Leucine-rich repeat pro 99.8 2.1E-18 7.1E-23 147.5 9.1 160 19-180 481-656 (876)
44 1wwl_A Monocyte differentiatio 99.7 6E-18 2.1E-22 129.3 10.7 151 24-179 118-285 (312)
45 2z7x_B TOLL-like receptor 1, v 99.7 1.7E-17 5.9E-22 134.6 14.0 154 24-180 321-480 (520)
46 3vq2_A TLR4, TOLL-like recepto 99.7 6.8E-18 2.3E-22 139.2 11.6 161 16-176 388-553 (606)
47 1wwl_A Monocyte differentiatio 99.7 3.2E-18 1.1E-22 130.8 8.9 150 27-181 149-309 (312)
48 2z66_A Variable lymphocyte rec 99.7 2.3E-18 7.9E-23 131.0 7.9 138 44-181 93-236 (306)
49 1xku_A Decorin; proteoglycan, 99.7 2.6E-17 9E-22 126.4 13.6 155 22-179 71-251 (330)
50 2xwt_C Thyrotropin receptor; s 99.7 6.3E-18 2.1E-22 124.4 9.5 149 16-166 68-227 (239)
51 2o6s_A Variable lymphocyte rec 99.7 6.8E-17 2.3E-21 116.5 14.8 143 15-160 18-165 (208)
52 2je0_A Acidic leucine-rich nuc 99.7 1.2E-17 4.1E-22 114.3 10.0 127 25-152 15-148 (149)
53 1xku_A Decorin; proteoglycan, 99.7 1.7E-17 5.7E-22 127.6 11.6 140 23-164 141-283 (330)
54 4glp_A Monocyte differentiatio 99.7 7.8E-18 2.7E-22 128.5 9.5 152 25-181 143-307 (310)
55 2id5_A Lingo-1, leucine rich r 99.7 1.6E-17 5.4E-22 133.5 11.7 146 28-174 33-182 (477)
56 2id5_A Lingo-1, leucine rich r 99.7 2.7E-17 9.3E-22 132.2 13.0 158 20-178 49-210 (477)
57 3v47_A TOLL-like receptor 5B a 99.7 4.5E-17 1.5E-21 129.9 13.7 127 54-180 277-407 (455)
58 3vq2_A TLR4, TOLL-like recepto 99.7 2.4E-17 8.3E-22 135.9 12.5 152 16-170 23-179 (606)
59 3oja_B Anopheles plasmodium-re 99.7 6.7E-17 2.3E-21 133.5 15.1 83 97-180 253-336 (597)
60 3o6n_A APL1; leucine-rich repe 99.7 9E-17 3.1E-21 126.1 15.1 82 98-180 248-330 (390)
61 1h6t_A Internalin B; cell adhe 99.7 8.5E-17 2.9E-21 121.9 14.4 150 23-181 42-191 (291)
62 2v70_A SLIT-2, SLIT homolog 2 99.7 5.3E-17 1.8E-21 118.3 12.6 147 30-180 14-165 (220)
63 3o6n_A APL1; leucine-rich repe 99.7 6.7E-17 2.3E-21 126.9 14.1 107 71-180 244-351 (390)
64 1m9s_A Internalin B; cell inva 99.7 7.7E-17 2.6E-21 133.2 14.8 150 22-180 60-209 (605)
65 3t6q_A CD180 antigen; protein- 99.7 8.3E-17 2.8E-21 132.7 14.5 158 20-178 393-557 (606)
66 2z81_A CD282 antigen, TOLL-lik 99.7 1.7E-17 5.7E-22 135.3 10.2 153 25-179 332-508 (549)
67 1ziw_A TOLL-like receptor 3; i 99.7 1.4E-16 4.7E-21 133.1 15.9 155 22-176 449-617 (680)
68 2ft3_A Biglycan; proteoglycan, 99.7 3.6E-17 1.2E-21 125.8 11.1 156 22-180 73-253 (332)
69 2z80_A TOLL-like receptor 2, v 99.7 1.5E-17 5.2E-22 129.0 8.9 164 14-180 41-210 (353)
70 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.1E-16 3.7E-21 131.2 14.4 153 24-179 350-508 (562)
71 2z81_A CD282 antigen, TOLL-lik 99.7 1.8E-17 6.3E-22 135.1 9.6 158 22-180 45-208 (549)
72 3oja_B Anopheles plasmodium-re 99.7 9.8E-17 3.4E-21 132.5 14.0 106 71-179 250-356 (597)
73 2z63_A TOLL-like receptor 4, v 99.7 8.1E-17 2.8E-21 131.7 13.3 153 15-170 18-175 (570)
74 4glp_A Monocyte differentiatio 99.7 1.8E-17 6.3E-22 126.4 8.2 159 19-181 107-285 (310)
75 4b8c_D Glucose-repressible alc 99.7 1.1E-17 3.8E-22 141.0 7.3 120 44-163 216-336 (727)
76 4fmz_A Internalin; leucine ric 99.7 3.7E-16 1.3E-20 120.6 15.3 148 25-180 197-345 (347)
77 3t6q_A CD180 antigen; protein- 99.7 1.4E-16 4.7E-21 131.4 13.1 161 15-178 23-189 (606)
78 1ziw_A TOLL-like receptor 3; i 99.7 2E-16 6.8E-21 132.1 14.2 162 15-179 15-182 (680)
79 4fmz_A Internalin; leucine ric 99.7 5.4E-16 1.8E-20 119.7 15.3 151 24-181 174-324 (347)
80 2o6s_A Variable lymphocyte rec 99.7 4.9E-16 1.7E-20 111.9 14.0 147 30-180 10-160 (208)
81 2je0_A Acidic leucine-rich nuc 99.7 9.5E-17 3.2E-21 109.8 9.5 124 51-175 16-147 (149)
82 2ell_A Acidic leucine-rich nuc 99.7 1.1E-16 3.8E-21 111.6 9.9 130 50-180 22-159 (168)
83 1xeu_A Internalin C; cellular 99.7 1.8E-16 6.2E-21 118.5 11.6 139 16-163 53-191 (263)
84 3o53_A Protein LRIM1, AGAP0063 99.7 5.2E-17 1.8E-21 124.3 8.3 146 25-172 118-266 (317)
85 2ft3_A Biglycan; proteoglycan, 99.7 1.5E-16 5.2E-21 122.3 10.8 157 20-181 95-277 (332)
86 1a9n_A U2A', U2A'; complex (nu 99.7 5.3E-17 1.8E-21 114.2 7.6 134 21-158 13-154 (176)
87 3cvr_A Invasion plasmid antige 99.7 3.4E-16 1.2E-20 128.4 12.4 137 26-180 99-242 (571)
88 1a9n_A U2A', U2A'; complex (nu 99.7 2.1E-16 7E-21 111.2 9.6 131 47-179 14-151 (176)
89 2wfh_A SLIT homolog 2 protein 99.7 8.1E-16 2.8E-20 109.9 12.6 125 30-158 13-140 (193)
90 1w8a_A SLIT protein; signaling 99.7 6E-16 2.1E-20 110.4 11.8 125 30-158 11-140 (192)
91 3v47_A TOLL-like receptor 5B a 99.7 6.4E-16 2.2E-20 123.3 13.3 134 26-160 274-412 (455)
92 2z63_A TOLL-like receptor 4, v 99.7 8.5E-17 2.9E-21 131.6 8.0 151 25-177 371-527 (570)
93 2z7x_B TOLL-like receptor 1, v 99.7 2.8E-16 9.5E-21 127.5 10.8 138 19-158 340-482 (520)
94 1m9s_A Internalin B; cell inva 99.7 6.2E-16 2.1E-20 127.9 12.8 150 23-181 39-188 (605)
95 2xot_A Amphoterin-induced prot 99.7 1.1E-15 3.9E-20 118.9 12.6 148 30-181 21-176 (361)
96 3oja_A Leucine-rich immune mol 99.7 2.1E-16 7.3E-21 127.7 8.1 130 26-157 119-250 (487)
97 3j0a_A TOLL-like receptor 5; m 99.7 1.9E-15 6.3E-20 129.4 14.2 161 15-179 15-185 (844)
98 1o6v_A Internalin A; bacterial 99.6 2.8E-15 9.7E-20 120.3 14.0 143 25-176 241-383 (466)
99 4b8c_D Glucose-repressible alc 99.6 1.8E-16 6.3E-21 133.6 7.4 119 16-136 213-331 (727)
100 3o53_A Protein LRIM1, AGAP0063 99.6 9.9E-17 3.4E-21 122.8 5.2 153 24-180 31-203 (317)
101 1o6v_A Internalin A; bacterial 99.6 5.2E-15 1.8E-19 118.7 15.3 149 23-179 195-364 (466)
102 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.1E-15 3.7E-20 125.3 11.5 140 19-160 369-514 (562)
103 3bz5_A Internalin-J, INLJ; leu 99.6 3.1E-15 1.1E-19 120.0 13.8 127 22-160 59-186 (457)
104 3oja_A Leucine-rich immune mol 99.6 5.2E-16 1.8E-20 125.4 8.9 152 25-180 32-203 (487)
105 3cvr_A Invasion plasmid antige 99.6 2.2E-15 7.5E-20 123.7 11.9 142 16-180 71-219 (571)
106 2wfh_A SLIT homolog 2 protein 99.6 2.2E-15 7.5E-20 107.6 10.4 124 54-179 12-137 (193)
107 4g8a_A TOLL-like receptor 4; l 99.6 1.4E-15 4.7E-20 125.4 9.9 138 22-159 415-557 (635)
108 2o6r_A Variable lymphocyte rec 99.6 1.5E-14 5.1E-19 101.6 13.5 129 29-161 9-141 (177)
109 1dce_A Protein (RAB geranylger 99.6 2.8E-15 9.7E-20 123.1 11.1 119 53-173 442-565 (567)
110 3bz5_A Internalin-J, INLJ; leu 99.6 1.1E-14 3.8E-19 116.7 14.0 61 23-89 81-141 (457)
111 2ast_B S-phase kinase-associat 99.6 3.4E-16 1.2E-20 120.3 4.7 155 21-176 87-255 (336)
112 1dce_A Protein (RAB geranylger 99.6 4.5E-15 1.5E-19 121.9 11.3 120 28-151 442-567 (567)
113 1ds9_A Outer arm dynein; leuci 99.6 2.4E-18 8.3E-23 123.3 -7.3 113 44-158 40-154 (198)
114 1w8a_A SLIT protein; signaling 99.6 2.4E-15 8.2E-20 107.2 8.0 125 54-180 10-138 (192)
115 3j0a_A TOLL-like receptor 5; m 99.6 5.2E-15 1.8E-19 126.6 11.3 140 19-158 40-188 (844)
116 1jl5_A Outer protein YOPM; leu 99.6 1.2E-14 4E-19 116.5 11.9 123 27-160 131-273 (454)
117 2ca6_A RAN GTPase-activating p 99.6 4.8E-16 1.6E-20 121.9 2.8 43 23-65 90-135 (386)
118 2ast_B S-phase kinase-associat 99.6 1.9E-15 6.6E-20 116.0 5.0 158 19-177 110-281 (336)
119 2o6r_A Variable lymphocyte rec 99.6 4.3E-14 1.5E-18 99.2 11.1 126 53-180 8-136 (177)
120 1jl5_A Outer protein YOPM; leu 99.6 3.9E-14 1.3E-18 113.5 12.2 137 27-178 111-247 (454)
121 4ay9_X Follicle-stimulating ho 99.6 1.3E-14 4.5E-19 112.5 9.0 158 15-172 41-230 (350)
122 3g06_A SSPH2 (leucine-rich rep 99.5 8.3E-14 2.8E-18 115.5 13.9 75 98-179 221-295 (622)
123 3g06_A SSPH2 (leucine-rich rep 99.5 8.2E-14 2.8E-18 115.5 13.5 131 15-161 51-198 (622)
124 1ds9_A Outer arm dynein; leuci 99.5 8.4E-17 2.9E-21 115.3 -3.8 137 16-158 37-186 (198)
125 2r9u_A Variable lymphocyte rec 99.5 7.4E-14 2.5E-18 98.1 10.7 105 55-161 15-122 (174)
126 3g39_A Variable lymphocyte rec 99.5 7.4E-14 2.5E-18 97.7 10.3 105 54-160 11-118 (170)
127 2ca6_A RAN GTPase-activating p 99.5 1.8E-14 6.2E-19 112.9 7.5 162 19-180 114-315 (386)
128 3goz_A Leucine-rich repeat-con 99.5 3.5E-14 1.2E-18 110.5 6.3 157 23-180 46-237 (362)
129 3goz_A Leucine-rich repeat-con 99.5 3.1E-14 1E-18 110.8 5.1 151 27-178 80-263 (362)
130 2r9u_A Variable lymphocyte rec 99.5 9.4E-13 3.2E-17 92.4 11.2 105 30-138 15-122 (174)
131 3g39_A Variable lymphocyte rec 99.4 1E-12 3.5E-17 91.8 10.2 103 29-135 11-116 (170)
132 4ay9_X Follicle-stimulating ho 99.4 4.1E-13 1.4E-17 104.0 8.3 159 14-177 90-255 (350)
133 1z7x_W Ribonuclease inhibitor; 99.4 4.2E-13 1.4E-17 107.0 5.1 159 23-181 24-212 (461)
134 2ifg_A High affinity nerve gro 99.3 7E-12 2.4E-16 96.7 10.2 90 44-134 24-116 (347)
135 1z7x_W Ribonuclease inhibitor; 99.3 3.7E-13 1.3E-17 107.4 2.1 37 122-158 314-355 (461)
136 3un9_A NLR family member X1; l 99.3 2.3E-12 7.8E-17 100.8 4.1 133 27-159 101-254 (372)
137 3sb4_A Hypothetical leucine ri 99.2 2.7E-11 9.1E-16 93.0 8.0 100 74-175 225-328 (329)
138 2ifg_A High affinity nerve gro 99.2 5.9E-11 2E-15 91.5 9.8 94 16-111 21-116 (347)
139 3un9_A NLR family member X1; l 99.2 2.7E-12 9.3E-17 100.3 1.4 156 26-181 71-252 (372)
140 3sb4_A Hypothetical leucine ri 99.2 5E-11 1.7E-15 91.5 7.4 149 26-177 48-306 (329)
141 3ogk_B Coronatine-insensitive 99.1 2.9E-11 9.9E-16 99.2 1.9 132 26-158 377-527 (592)
142 3ogk_B Coronatine-insensitive 99.1 9.2E-11 3.1E-15 96.3 4.7 82 25-106 162-251 (592)
143 1io0_A Tropomodulin; LRR prote 99.0 1.2E-09 4.1E-14 77.2 6.4 114 45-158 29-165 (185)
144 2p1m_B Transport inhibitor res 98.9 2.1E-10 7.2E-15 94.1 2.1 41 26-66 129-170 (594)
145 2p1m_B Transport inhibitor res 98.8 7E-10 2.4E-14 91.0 0.6 81 24-104 153-241 (594)
146 1io0_A Tropomodulin; LRR prote 98.8 2.9E-09 9.8E-14 75.2 3.1 114 21-134 30-164 (185)
147 4fdw_A Leucine rich hypothetic 98.7 6.1E-08 2.1E-12 76.4 9.4 57 116-173 266-328 (401)
148 2ra8_A Uncharacterized protein 98.7 3.5E-08 1.2E-12 76.8 6.4 61 97-157 251-320 (362)
149 2ra8_A Uncharacterized protein 98.6 6.9E-08 2.4E-12 75.1 7.4 162 17-180 129-319 (362)
150 4fdw_A Leucine rich hypothetic 98.6 2.7E-07 9.3E-12 72.7 10.7 127 46-176 174-308 (401)
151 3rw6_A Nuclear RNA export fact 98.3 1E-06 3.5E-11 65.6 5.0 64 96-160 168-237 (267)
152 3rw6_A Nuclear RNA export fact 98.1 3.9E-06 1.3E-10 62.5 5.8 93 57-150 148-257 (267)
153 1pgv_A TMD-1, tropomodulin TMD 98.1 8E-06 2.7E-10 57.9 6.8 111 47-157 36-170 (197)
154 3e4g_A ATP synthase subunit S, 97.9 2.3E-05 7.8E-10 54.6 6.2 83 52-134 61-153 (176)
155 3e4g_A ATP synthase subunit S, 97.8 4.7E-05 1.6E-09 53.0 6.6 82 27-109 61-150 (176)
156 1pgv_A TMD-1, tropomodulin TMD 97.8 1.4E-05 4.9E-10 56.7 3.4 110 24-133 38-169 (197)
157 4h09_A Hypothetical leucine ri 97.7 0.00019 6.6E-09 55.6 9.6 141 25-171 215-359 (379)
158 4gt6_A Cell surface protein; l 97.6 0.00026 8.9E-09 55.3 8.5 104 47-154 260-367 (394)
159 4fs7_A Uncharacterized protein 97.5 0.0016 5.6E-08 50.7 11.4 122 48-175 249-373 (394)
160 4h09_A Hypothetical leucine ri 97.4 0.0017 5.8E-08 50.2 10.9 126 47-176 212-341 (379)
161 4fs7_A Uncharacterized protein 97.4 0.0015 5E-08 51.0 10.1 124 24-154 250-376 (394)
162 4gt6_A Cell surface protein; l 97.2 0.0035 1.2E-07 48.8 10.6 106 69-178 259-367 (394)
163 3rfe_A Platelet glycoprotein I 97.1 0.00087 3E-08 44.2 5.0 34 77-110 33-67 (130)
164 3rfe_A Platelet glycoprotein I 96.8 0.0023 7.9E-08 42.1 5.0 55 78-134 11-68 (130)
165 2lz0_A Uncharacterized protein 34.8 48 0.0016 20.0 3.6 12 117-128 39-50 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=7.1e-21 Score=146.66 Aligned_cols=141 Identities=23% Similarity=0.230 Sum_probs=82.3
Q ss_pred ccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccc-cchhhh
Q psy3785 16 LVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLE-MINEAV 94 (184)
Q Consensus 16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~ 94 (184)
+..++..+..++.|+.|++++|.+. .+|..+..+++|++|++++|.++.+|..+..+++|++|++++|++. .+|..+
T Consensus 93 l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~ 170 (328)
T 4fcg_A 93 LPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPL 170 (328)
T ss_dssp CSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCS
T ss_pred chhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhH
Confidence 3455555666667777777766665 5566666666677777777766666666666666666666665432 444433
Q ss_pred cC---------CCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCC
Q psy3785 95 YD---------LPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158 (184)
Q Consensus 95 ~~---------l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~ 158 (184)
.. +++|++|++++|.++.+|..++.++.|+.+++++|.++.+|..++.+++|+.+++++|.+.+
T Consensus 171 ~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~ 243 (328)
T 4fcg_A 171 ASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR 243 (328)
T ss_dssp EEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCC
T ss_pred hhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchh
Confidence 22 55555555555555555555555555555555555555555445555555555555554444
No 2
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=5.9e-20 Score=136.32 Aligned_cols=163 Identities=24% Similarity=0.306 Sum_probs=112.6
Q ss_pred cccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCc-hhhhCCCCCCEEEcccCccccch-h
Q psy3785 15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEMIN-E 92 (184)
Q Consensus 15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~-~ 92 (184)
.+.++|..+. +.++.|++++|.+.. ..+..+..+++|++|++++|.+++++ ..+..+++|++|++++|.++.++ .
T Consensus 25 ~l~~~p~~~~--~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 101 (251)
T 3m19_A 25 SLDSVPSGIP--ADTEKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLG 101 (251)
T ss_dssp CCSSCCSCCC--TTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CccccCCCCC--CCCCEEEccCCCcCc-cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChh
Confidence 3444554443 567777777777765 44556777777778888777777754 34677777778888777777665 3
Q ss_pred hhcCCCCceEEEccccccccchh-hhcCCCCCCEEEccCCCCCCcch-hhhcCCCCCEEeccCCCCCCCcHHHhhhhhcc
Q psy3785 93 AVYDLPHLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIESLPE-NIGYMKSLTHIDASHNTISYVPWKLFSKFHQN 170 (184)
Q Consensus 93 ~~~~l~~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l 170 (184)
.+..+++|++|++++|.++.++. .+..++.|+.|++++|.++.++. .+..+++|+.+++++|.+++++...+..++.+
T Consensus 102 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 181 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 34567777777777777776654 35677777777777777777665 46677777777777777777776666666777
Q ss_pred cccccccccc
Q psy3785 171 RSSRFGCALI 180 (184)
Q Consensus 171 ~~~~~~~~~~ 180 (184)
+.+.++.|.+
T Consensus 182 ~~L~l~~N~~ 191 (251)
T 3m19_A 182 QTITLFGNQF 191 (251)
T ss_dssp CEEECCSCCB
T ss_pred CEEEeeCCce
Confidence 7666655443
No 3
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=1.7e-19 Score=136.10 Aligned_cols=161 Identities=20% Similarity=0.265 Sum_probs=127.5
Q ss_pred ccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCccccchhh-hcCC
Q psy3785 20 VGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINEA-VYDL 97 (184)
Q Consensus 20 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l 97 (184)
+..+..+++|+.|++++|.......+..+..+++|++|++++|.++++ |..+..+++|++|++++|.++.++.. +..+
T Consensus 73 ~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 152 (285)
T 1ozn_A 73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152 (285)
T ss_dssp TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccC
Confidence 456677788888888888633324467777888888888888888886 55577888888888888888877643 6678
Q ss_pred CCceEEEccccccccchh-hhcCCCCCCEEEccCCCCCCc-chhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccc
Q psy3785 98 PHLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRF 175 (184)
Q Consensus 98 ~~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~ 175 (184)
++|+.|++++|.++.++. .+..++.|+.+++++|.++.+ |..+..+++|+.+++++|.+++++...+..++.++.+.+
T Consensus 153 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEec
Confidence 889999999988887764 578888999999999988866 666788899999999999999988887888888887777
Q ss_pred ccccc
Q psy3785 176 GCALI 180 (184)
Q Consensus 176 ~~~~~ 180 (184)
+.|.+
T Consensus 233 ~~N~~ 237 (285)
T 1ozn_A 233 NDNPW 237 (285)
T ss_dssp CSSCE
T ss_pred cCCCc
Confidence 65544
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=4.5e-20 Score=142.17 Aligned_cols=139 Identities=17% Similarity=0.197 Sum_probs=66.0
Q ss_pred ccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc-CchhhhC---------CCCCCEEEcccCcc
Q psy3785 18 SLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRH---------LTNLNELALNNNQL 87 (184)
Q Consensus 18 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~---------l~~L~~L~l~~n~l 87 (184)
.++..++.+++|+.|++++|.+. .+|..+..+++|++|++++|.+.+ +|..+.. +++|++|++++|.+
T Consensus 118 ~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l 195 (328)
T 4fcg_A 118 ELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI 195 (328)
T ss_dssp CCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC
T ss_pred chhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc
Confidence 44444555555555555555544 345555555555555555543332 3433322 44555555555554
Q ss_pred ccchhhhcCCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCC-CcchhhhcCCCCCEEeccCCCCCC
Q psy3785 88 EMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTISY 158 (184)
Q Consensus 88 ~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~L~~n~l~~ 158 (184)
+.+|..+..+++|+.|++++|.++.+|+.+..++.|+.+++++|.+. .+|..++.+++|+.+++++|.+.+
T Consensus 196 ~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 196 RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp CCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred CcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence 44444444444555555555544444444444444444444444433 333334444444444444444333
No 5
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.82 E-value=4.6e-19 Score=132.86 Aligned_cols=156 Identities=21% Similarity=0.275 Sum_probs=117.1
Q ss_pred CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCch-hhhCCCCCCEEEcccCccccch-hhhcCCCC
Q psy3785 22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPD-EIRHLTNLNELALNNNQLEMIN-EAVYDLPH 99 (184)
Q Consensus 22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~ 99 (184)
.+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++.+|. .+..+++|++|++++|.++.++ ..+..+++
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 134 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred HhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC
Confidence 56677888888888887763 333445677888888888888887754 3577788888888888888665 34567888
Q ss_pred ceEEEccccccccchh-hhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccc
Q psy3785 100 LYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGC 177 (184)
Q Consensus 100 l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~ 177 (184)
|++|++++|.++.++. .+..++.|+.+++++|.++.++.. +..+++|+.+++++|.++.+|...+..++.++.+.++.
T Consensus 135 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence 8888888888887754 467788888888888888877653 66788888888888888888777777777777666654
Q ss_pred c
Q psy3785 178 A 178 (184)
Q Consensus 178 ~ 178 (184)
|
T Consensus 215 N 215 (270)
T 2o6q_A 215 N 215 (270)
T ss_dssp S
T ss_pred C
Confidence 4
No 6
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=9.3e-20 Score=138.17 Aligned_cols=152 Identities=18% Similarity=0.224 Sum_probs=108.1
Q ss_pred cCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccch-hhhcCCCC
Q psy3785 21 GSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMIN-EAVYDLPH 99 (184)
Q Consensus 21 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~ 99 (184)
..+..+++|+.|++++|.+.. ++.. ..+++|+.|++++|.++.+|..+..+++|++|++++|+++.+| ..+..+++
T Consensus 49 ~~~~~l~~L~~L~L~~n~l~~--~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~ 125 (290)
T 1p9a_G 49 ATLMPYTRLTQLNLDRAELTK--LQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125 (290)
T ss_dssp GGGTTCTTCCEEECTTSCCCE--EECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT
T ss_pred HHhhcCCCCCEEECCCCccCc--ccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCC
Confidence 445667777777777777653 2332 5677777888888877777777777788888888888888776 44667778
Q ss_pred ceEEEccccccccchh-hhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccc
Q psy3785 100 LYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFG 176 (184)
Q Consensus 100 l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~ 176 (184)
|++|++++|.++.+|. .+..+++|+.+++++|.++.+|.. +..+++|+.+++++|.++.+|..++.. ..++.+.+.
T Consensus 126 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~-~~L~~l~L~ 203 (290)
T 1p9a_G 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLH 203 (290)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CCCSEEECC
T ss_pred CCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhccc-ccCCeEEeC
Confidence 8888888888877654 456777888888888888877654 456778888888888888887766553 244444443
No 7
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=6.2e-19 Score=132.13 Aligned_cols=163 Identities=22% Similarity=0.340 Sum_probs=139.4
Q ss_pred cccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hhCCCCCCEEEcccCccccchh-
Q psy3785 15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINE- 92 (184)
Q Consensus 15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~- 92 (184)
.+..+|..+ .+.++.|++++|.+.. ..+..+..+++|++|++++|.++.+|.. +..+++|++|++++|.++.+|.
T Consensus 27 ~l~~ip~~~--~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~ 103 (270)
T 2o6q_A 27 KLTAIPSNI--PADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIG 103 (270)
T ss_dssp CCSSCCSCC--CTTCSEEECCSSCCSC-CCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTT
T ss_pred CCCccCCCC--CCCCCEEECcCCCCCe-eCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHh
Confidence 344555544 3689999999999875 4456889999999999999999998765 5789999999999999998874
Q ss_pred hhcCCCCceEEEccccccccch-hhhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCCCcHHHhhhhhcc
Q psy3785 93 AVYDLPHLYKFNVSNNMIAKIS-DNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQN 170 (184)
Q Consensus 93 ~~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l 170 (184)
.+..+++|++|++++|.++.++ ..+..++.|+.+++++|.++.++.. +..+++|+.+++++|.++.++...+..++.|
T Consensus 104 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 183 (270)
T 2o6q_A 104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL 183 (270)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCc
Confidence 4567999999999999999875 4578999999999999999988765 6889999999999999999988888888899
Q ss_pred cccccccccc
Q psy3785 171 RSSRFGCALI 180 (184)
Q Consensus 171 ~~~~~~~~~~ 180 (184)
+.+.++.+.+
T Consensus 184 ~~L~L~~N~l 193 (270)
T 2o6q_A 184 KTLKLDNNQL 193 (270)
T ss_dssp CEEECCSSCC
T ss_pred CEEECCCCcC
Confidence 9888877654
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=5.4e-19 Score=133.26 Aligned_cols=159 Identities=20% Similarity=0.226 Sum_probs=120.5
Q ss_pred cCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCc-cccC-chhhhCCCCCCEEEcccCccccc-hhhhcCC
Q psy3785 21 GSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNN-LKGL-PDEIRHLTNLNELALNNNQLEMI-NEAVYDL 97 (184)
Q Consensus 21 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l-p~~~~~l~~L~~L~l~~n~l~~~-~~~~~~l 97 (184)
..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|. +..+ |..+..+++|++|++++|.++.+ +..+..+
T Consensus 50 ~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 128 (285)
T 1ozn_A 50 ASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL 128 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred HHcccCCCCCEEECCCCccce-eCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCC
Confidence 346777888888888887664 446677778888888888886 7776 56677788888888888888866 3556678
Q ss_pred CCceEEEccccccccchh-hhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccc
Q psy3785 98 PHLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRF 175 (184)
Q Consensus 98 ~~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~ 175 (184)
++|++|++++|.++.++. .+..++.|+.+++++|.++.++.. +..+++|+.+++++|.+++++...+..++.|+.+.+
T Consensus 129 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208 (285)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeC
Confidence 888888888888887754 477788888888888888877653 677888888888888888865555566777777777
Q ss_pred ccccc
Q psy3785 176 GCALI 180 (184)
Q Consensus 176 ~~~~~ 180 (184)
+.+.+
T Consensus 209 ~~n~l 213 (285)
T 1ozn_A 209 FANNL 213 (285)
T ss_dssp CSSCC
T ss_pred CCCcC
Confidence 76654
No 9
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=6.7e-19 Score=133.44 Aligned_cols=151 Identities=21% Similarity=0.248 Sum_probs=77.9
Q ss_pred ccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEcc
Q psy3785 27 ALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVS 106 (184)
Q Consensus 27 ~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~ 106 (184)
+.++.|++++|.+.. ..+..+..+++|+.|++++|.++.++.. ..+++|++|++++|.++.+|..+..+++|+.|+++
T Consensus 31 ~~l~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 31 KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred CCCCEEEcCCCcCCc-cCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECC
Confidence 455555555555443 2344455555555555555555554332 44555555555555555555444455555555555
Q ss_pred ccccccch-hhhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccccc
Q psy3785 107 NNMIAKIS-DNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCAL 179 (184)
Q Consensus 107 ~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~ 179 (184)
+|+++.++ ..+..++.|+.+++++|.++.+|.. +..+++|+.+++++|.++.+|...+..++.|+.+.++.|.
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc
Confidence 55555443 3345555555555555555544432 3445555555555555555555555555555555554443
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=1.2e-19 Score=138.98 Aligned_cols=158 Identities=20% Similarity=0.320 Sum_probs=91.5
Q ss_pred cccCCCcCccccEEEeec-CCCCCCCCcccccCCCCccEEEecCCcccc-CchhhhCCCCCCEEEcccCccc-cchhhhc
Q psy3785 19 LVGSASASALLYTYEISS-DTGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVY 95 (184)
Q Consensus 19 ~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~ 95 (184)
++..+..++.|+.|++++ |.+.+ .+|..+..+++|++|++++|.+++ +|..+..+++|++|++++|.++ .+|..+.
T Consensus 68 ~~~~l~~l~~L~~L~L~~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 68 IPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred cChhHhCCCCCCeeeCCCCCcccc-cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 455566666666666663 55544 456666666666666666666663 5666666666666666666666 4555566
Q ss_pred CCCCceEEEccccccc-cchhhhcCCC-CCCEEEccCCCCC-CcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccc
Q psy3785 96 DLPHLYKFNVSNNMIA-KISDNIGNLT-SLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRS 172 (184)
Q Consensus 96 ~l~~l~~L~l~~n~~~-~~~~~~~~~~-~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~ 172 (184)
.+++|++|++++|.++ .+|..+..++ .|+.+++++|.++ .+|..+..++ |+.+++++|.+++.+...+..++.++.
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 225 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQK 225 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSE
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCE
Confidence 6666666666666665 4555566655 6666666666655 4444444443 555555555555433333344444444
Q ss_pred cccccc
Q psy3785 173 SRFGCA 178 (184)
Q Consensus 173 ~~~~~~ 178 (184)
+.++.+
T Consensus 226 L~L~~N 231 (313)
T 1ogq_A 226 IHLAKN 231 (313)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 444333
No 11
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=1.5e-18 Score=127.15 Aligned_cols=142 Identities=25% Similarity=0.295 Sum_probs=124.2
Q ss_pred cccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hhCCCCCCEEEcccCccccchhh
Q psy3785 15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINEA 93 (184)
Q Consensus 15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~ 93 (184)
.+..+|..+ .++|+.|++++|.+.. ..+..+..+++|+.|++++|.++.+|.. +..+++|++|++++|.++.++..
T Consensus 30 ~l~~ip~~~--~~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 106 (229)
T 3e6j_A 30 RHASVPAGI--PTNAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA 106 (229)
T ss_dssp CCSSCCSCC--CTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CcCccCCCC--CCCCCEEEcCCCccCc-cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChh
Confidence 345566544 4899999999999886 5578889999999999999999998754 68899999999999999988754
Q ss_pred -hcCCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcch-hhhcCCCCCEEeccCCCCCCC
Q psy3785 94 -VYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPE-NIGYMKSLTHIDASHNTISYV 159 (184)
Q Consensus 94 -~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~L~~n~l~~~ 159 (184)
+..+++|+.|++++|.++.+|..+..++.|+.+++++|.++.++. .+..+++|+.+++++|++.+.
T Consensus 107 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred HhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 568999999999999999999889999999999999999998875 478899999999999999873
No 12
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=1.2e-18 Score=130.69 Aligned_cols=156 Identities=24% Similarity=0.326 Sum_probs=124.9
Q ss_pred cCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hhCCCCCCEEEcccCccccchhh-hcCCC
Q psy3785 21 GSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINEA-VYDLP 98 (184)
Q Consensus 21 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~-~~~l~ 98 (184)
..+..+++|+.|++++|.+.+ .+.+..+++|++|++++|.+++++.. +..+++|++|++++|.++.++.. +..++
T Consensus 57 ~~l~~l~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 133 (272)
T 3rfs_A 57 QGIQYLPNVRYLALGGNKLHD---ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT 133 (272)
T ss_dssp TTGGGCTTCCEEECTTSCCCC---CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred cccccCCCCcEEECCCCCCCC---chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC
Confidence 346678889999999888775 24677888999999999998887544 67888999999999988877644 56788
Q ss_pred CceEEEccccccccchh-hhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccc
Q psy3785 99 HLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFG 176 (184)
Q Consensus 99 ~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~ 176 (184)
+|++|++++|.++.+++ .+..++.|+.+++++|.++.++.. +..+++|+.+++++|.+++++...+..++.|+.+.++
T Consensus 134 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 213 (272)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEcc
Confidence 89999999998887754 467888899999999988877654 5778889999999999988877777777888877776
Q ss_pred ccc
Q psy3785 177 CAL 179 (184)
Q Consensus 177 ~~~ 179 (184)
.|.
T Consensus 214 ~N~ 216 (272)
T 3rfs_A 214 DNP 216 (272)
T ss_dssp SSC
T ss_pred CCC
Confidence 554
No 13
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=4.2e-18 Score=130.02 Aligned_cols=149 Identities=21% Similarity=0.266 Sum_probs=83.2
Q ss_pred CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCce
Q psy3785 22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLY 101 (184)
Q Consensus 22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~ 101 (184)
.+..+++|+.|++++|.+.. +++ +..+++|++|++++|.+++++ .+..+++|+.|++++|.++.++. +..+++|+
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~--~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~ 132 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQ 132 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCC
T ss_pred hhhccCCCCEEEccCCcCCC--Chh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCC
Confidence 35556666666666666553 233 556666666666666666654 35556666666666666665543 45555666
Q ss_pred EEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccccc
Q psy3785 102 KFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCAL 179 (184)
Q Consensus 102 ~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~ 179 (184)
.|++++|.++.++. +..++.|+.+++++|.++.++. +..+++|+.+++++|.+++++. +..++.|+.+.++.+.
T Consensus 133 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 133 VLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp EEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSC
T ss_pred EEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCc
Confidence 66666666555433 5555555555555555555444 4455555555555555555443 3344444444444443
No 14
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=4.2e-19 Score=135.87 Aligned_cols=159 Identities=20% Similarity=0.269 Sum_probs=87.1
Q ss_pred ccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc-CchhhhCCCCCCEEEcccCccc-cchhhhc
Q psy3785 18 SLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVY 95 (184)
Q Consensus 18 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~ 95 (184)
.++..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++ +|..+..+++|++|++++|.++ .+|..+.
T Consensus 92 ~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 170 (313)
T 1ogq_A 92 PIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170 (313)
T ss_dssp CCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred cCChhHhcCCCCCEEECcCCeeCC-cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh
Confidence 355556667777777777776654 456666666666667766666663 5666666666666666666666 5555555
Q ss_pred CCC-CceEEEccccccc-cchh-----------------------hhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEe
Q psy3785 96 DLP-HLYKFNVSNNMIA-KISD-----------------------NIGNLTSLLVLNISNNKIESLPENIGYMKSLTHID 150 (184)
Q Consensus 96 ~l~-~l~~L~l~~n~~~-~~~~-----------------------~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~ 150 (184)
.+. +|+.|++++|.++ .+|. .+..++.|+.+++++|.++..+..+..+++|+.++
T Consensus 171 ~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~ 250 (313)
T 1ogq_A 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD 250 (313)
T ss_dssp CCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEE
T ss_pred hhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEE
Confidence 555 5666666665554 2233 33344444444444444443322234445555555
Q ss_pred ccCCCCCC-CcHHHhhhhhcccccccccc
Q psy3785 151 ASHNTISY-VPWKLFSKFHQNRSSRFGCA 178 (184)
Q Consensus 151 L~~n~l~~-~~~~~~~~~~~l~~~~~~~~ 178 (184)
+++|.+++ +|. .+..++.++.+.++.|
T Consensus 251 Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 251 LRNNRIYGTLPQ-GLTQLKFLHSLNVSFN 278 (313)
T ss_dssp CCSSCCEECCCG-GGGGCTTCCEEECCSS
T ss_pred CcCCcccCcCCh-HHhcCcCCCEEECcCC
Confidence 55555553 333 2233444444444443
No 15
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=4.1e-18 Score=126.36 Aligned_cols=138 Identities=23% Similarity=0.319 Sum_probs=122.9
Q ss_pred cCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCc-hhhhCCCCCCEEEcccCccccchhh-hcCCC
Q psy3785 21 GSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEMINEA-VYDLP 98 (184)
Q Consensus 21 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~ 98 (184)
..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++.+| ..+..+++|++|++++|.++.++.. +..++
T Consensus 53 ~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 131 (251)
T 3m19_A 53 ATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT 131 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCC
Confidence 457889999999999999886 55677889999999999999999986 4578899999999999999988755 56799
Q ss_pred CceEEEccccccccchh-hhcCCCCCCEEEccCCCCCCcch-hhhcCCCCCEEeccCCCCCCC
Q psy3785 99 HLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIESLPE-NIGYMKSLTHIDASHNTISYV 159 (184)
Q Consensus 99 ~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~L~~n~l~~~ 159 (184)
+|+.|++++|.++.+++ .+..++.|+.+++++|.++.++. .+..+++|+.+++++|++.+.
T Consensus 132 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 132 KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999999999998865 68899999999999999998875 578899999999999999875
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.78 E-value=1.2e-18 Score=147.57 Aligned_cols=159 Identities=24% Similarity=0.368 Sum_probs=89.9
Q ss_pred cccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc-CchhhhCCCCCCEEEcccCccc-cchhhhc-
Q psy3785 19 LVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVY- 95 (184)
Q Consensus 19 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~- 95 (184)
++..+..+++|+.|++++|.+.+ .+|..++.+++|++|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+.
T Consensus 482 ~p~~l~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 482 IPSGLSNCTNLNWISLSNNRLTG-EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred CCHHHhcCCCCCEEEccCCccCC-cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence 33444555555555555555554 445555555566666666665553 4555555566666666655554 3332221
Q ss_pred ---------------------------------------------------------------------CCCCceEEEcc
Q psy3785 96 ---------------------------------------------------------------------DLPHLYKFNVS 106 (184)
Q Consensus 96 ---------------------------------------------------------------------~l~~l~~L~l~ 106 (184)
.+++++.|+++
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs 640 (768)
T 3rgz_A 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640 (768)
T ss_dssp TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECC
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECc
Confidence 12345566666
Q ss_pred ccccc-cchhhhcCCCCCCEEEccCCCCC-CcchhhhcCCCCCEEeccCCCCCC-CcHHHhhhhhccccccccccc
Q psy3785 107 NNMIA-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTISY-VPWKLFSKFHQNRSSRFGCAL 179 (184)
Q Consensus 107 ~n~~~-~~~~~~~~~~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~L~~n~l~~-~~~~~~~~~~~l~~~~~~~~~ 179 (184)
+|.++ .+|..++.++.|+.+++++|.++ .+|..++.++.|+.+++++|.+++ +|. .+..+..|+.+.++.|.
T Consensus 641 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ-AMSALTMLTEIDLSNNN 715 (768)
T ss_dssp SSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG-GGGGCCCCSEEECCSSE
T ss_pred CCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh-HHhCCCCCCEEECcCCc
Confidence 66655 44666666666666666666666 556666666666666666666665 443 33445555555555443
No 17
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=2.8e-18 Score=122.90 Aligned_cols=151 Identities=14% Similarity=0.114 Sum_probs=129.4
Q ss_pred CcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCcccc-chhhhcCCCCceE
Q psy3785 24 SASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEM-INEAVYDLPHLYK 102 (184)
Q Consensus 24 ~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~-~~~~~~~l~~l~~ 102 (184)
+.++.|+.+++++|.+. .+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.++. .+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT--DLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS--CCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc--ChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 56789999999999987 445 6888999999999999877764 68889999999999999985 5677788999999
Q ss_pred EEcccccccc-chhhhcCCCCCCEEEccCCC-CCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccccc
Q psy3785 103 FNVSNNMIAK-ISDNIGNLTSLLVLNISNNK-IESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALI 180 (184)
Q Consensus 103 L~l~~n~~~~-~~~~~~~~~~L~~l~l~~n~-l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~ 180 (184)
|++++|.++. .+..+..++.|+.+++++|. ++.++ .+..+++|+.+++++|.++.++ .+..++.|+.+.+.+|.+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence 9999999985 57789999999999999998 88887 5888999999999999999987 456778899999888876
Q ss_pred c
Q psy3785 181 M 181 (184)
Q Consensus 181 ~ 181 (184)
-
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 18
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=7.6e-19 Score=131.87 Aligned_cols=157 Identities=21% Similarity=0.238 Sum_probs=100.2
Q ss_pred CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCc-hhhhCCCCCCEEEcccCccccchh-hhcCCCC
Q psy3785 22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEMINE-AVYDLPH 99 (184)
Q Consensus 22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~ 99 (184)
.+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.+++++ ..+..+++|++|++++|.++.++. .+..+++
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 125 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred HhccccCCcEEECCCCcCCc-cCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCC
Confidence 55667777777777776553 33445666677777777777776653 446666667777777666665543 4555666
Q ss_pred ceEEEcccccccc--chhhhcCCCCCCEEEccCCCCCCcc----------------------------hhhhcCCCCCEE
Q psy3785 100 LYKFNVSNNMIAK--ISDNIGNLTSLLVLNISNNKIESLP----------------------------ENIGYMKSLTHI 149 (184)
Q Consensus 100 l~~L~l~~n~~~~--~~~~~~~~~~L~~l~l~~n~l~~l~----------------------------~~~~~~~~L~~l 149 (184)
|++|++++|.++. +|..+..++.|+.+++++|.++.++ .......+|+.+
T Consensus 126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L 205 (276)
T 2z62_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKEL 205 (276)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEE
T ss_pred CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEE
Confidence 6666666666664 4556666666666666666665432 222223367778
Q ss_pred eccCCCCCCCcHHHhhhhhccccccccccc
Q psy3785 150 DASHNTISYVPWKLFSKFHQNRSSRFGCAL 179 (184)
Q Consensus 150 ~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~ 179 (184)
++++|.++++|...+..++.++.+.++.|.
T Consensus 206 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp ECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred ECCCCceeecCHhHhcccccccEEEccCCc
Confidence 888888888777777777777766665443
No 19
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=4.4e-19 Score=130.60 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=92.4
Q ss_pred CCCcCccccEEEeecCC-CCCCCCcccccCCCCccEEEecC-CccccCc-hhhhCCCCCCEEEcccCccccchhhhcCCC
Q psy3785 22 SASASALLYTYEISSDT-GSGESNMSQSEPVLKLKVLNLQY-NNLKGLP-DEIRHLTNLNELALNNNQLEMINEAVYDLP 98 (184)
Q Consensus 22 ~~~~~~~l~~l~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~-n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~ 98 (184)
.+..+++|+.|++++|. +.. ..+..+..+++|++|++++ |.++.+| ..+..+++|++|++++|.++.+|. +..+.
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~ 127 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQ-LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVY 127 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCE-ECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCC
T ss_pred HccCCCCCcEEeCCCCCCcce-eCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-ccccc
Confidence 45566666666666665 332 2233555666666666666 6666654 335566666666666666666554 44455
Q ss_pred Cce---EEEcccc-ccccchh-hhcCCCCCC-EEEccCCCCCCcchhhhcCCCCCEEeccCCC-CCCCcHHHhhhh-hcc
Q psy3785 99 HLY---KFNVSNN-MIAKISD-NIGNLTSLL-VLNISNNKIESLPENIGYMKSLTHIDASHNT-ISYVPWKLFSKF-HQN 170 (184)
Q Consensus 99 ~l~---~L~l~~n-~~~~~~~-~~~~~~~L~-~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~-l~~~~~~~~~~~-~~l 170 (184)
+++ .+++++| .++.++. .+.+++.|+ .+++++|.++.+|......++|+.+++++|+ ++.++...+..+ +.+
T Consensus 128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L 207 (239)
T 2xwt_C 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207 (239)
T ss_dssp BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCC
T ss_pred ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCC
Confidence 554 6666666 6665543 356666666 6666666666665543333566666666663 666655555555 566
Q ss_pred cccccccccc
Q psy3785 171 RSSRFGCALI 180 (184)
Q Consensus 171 ~~~~~~~~~~ 180 (184)
+.+.++.+.+
T Consensus 208 ~~L~l~~N~l 217 (239)
T 2xwt_C 208 SLLDVSQTSV 217 (239)
T ss_dssp SEEECTTCCC
T ss_pred cEEECCCCcc
Confidence 6555555443
No 20
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=5.8e-18 Score=129.27 Aligned_cols=155 Identities=20% Similarity=0.273 Sum_probs=131.7
Q ss_pred ccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhc
Q psy3785 16 LVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVY 95 (184)
Q Consensus 16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~ 95 (184)
+..++. +..+++|+.|++++|.+.. + +.+..+++|++|++++|.+++++. +..+++|+.|++++|.++.++. +.
T Consensus 75 i~~~~~-~~~l~~L~~L~L~~n~l~~--~-~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~ 148 (308)
T 1h6u_A 75 ITDLAP-LKNLTKITELELSGNPLKN--V-SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LA 148 (308)
T ss_dssp CCCCGG-GTTCCSCCEEECCSCCCSC--C-GGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GG
T ss_pred CCCChh-HccCCCCCEEEccCCcCCC--c-hhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-cc
Confidence 344444 7889999999999999875 3 468889999999999999999865 8889999999999999998765 67
Q ss_pred CCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccc
Q psy3785 96 DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRF 175 (184)
Q Consensus 96 ~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~ 175 (184)
.+++|+.|++++|.++.++. +..++.|+.+++++|.++.++. +..++.|+.+++++|.+++++. +..++.|+.+.+
T Consensus 149 ~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l 224 (308)
T 1h6u_A 149 GLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224 (308)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEE
T ss_pred CCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEc
Confidence 88999999999999998866 8899999999999999998876 7888999999999999999874 566778887777
Q ss_pred ccccc
Q psy3785 176 GCALI 180 (184)
Q Consensus 176 ~~~~~ 180 (184)
+.+.+
T Consensus 225 ~~N~i 229 (308)
T 1h6u_A 225 TNQTI 229 (308)
T ss_dssp EEEEE
T ss_pred cCCee
Confidence 76654
No 21
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.78 E-value=1.4e-18 Score=121.35 Aligned_cols=137 Identities=20% Similarity=0.270 Sum_probs=122.1
Q ss_pred CcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCcccc-chhhhcCCCCceE
Q psy3785 24 SASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEM-INEAVYDLPHLYK 102 (184)
Q Consensus 24 ~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~-~~~~~~~l~~l~~ 102 (184)
...+.++.|++++|.+....+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+..+++|+.
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 45688999999999988557888889999999999999999988 678889999999999999997 6666667999999
Q ss_pred EEccccccccch--hhhcCCCCCCEEEccCCCCCCcch----hhhcCCCCCEEeccCCCCCCCcH
Q psy3785 103 FNVSNNMIAKIS--DNIGNLTSLLVLNISNNKIESLPE----NIGYMKSLTHIDASHNTISYVPW 161 (184)
Q Consensus 103 L~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~~l~~----~~~~~~~L~~l~L~~n~l~~~~~ 161 (184)
|++++|.++.++ ..+..++.|+.+++++|.++.++. .+..+++|+.+++++|.+..+|.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 999999999875 678999999999999999998876 68889999999999999988775
No 22
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=5.9e-18 Score=124.05 Aligned_cols=147 Identities=23% Similarity=0.293 Sum_probs=126.7
Q ss_pred ccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCccccchhh-hcCCCCceEEEcc
Q psy3785 29 LYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINEA-VYDLPHLYKFNVS 106 (184)
Q Consensus 29 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~l~~L~l~ 106 (184)
-+.++.+++... .+|..+. ++|+.|++++|.++++ |..+..+++|+.|++++|.++.+|.. +..+++|+.|+++
T Consensus 21 ~~~v~c~~~~l~--~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA--SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS--SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC--ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 346777766655 5666543 8899999999999997 66789999999999999999988754 5689999999999
Q ss_pred ccccccchh-hhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccccc
Q psy3785 107 NNMIAKISD-NIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCAL 179 (184)
Q Consensus 107 ~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~ 179 (184)
+|.++.++. .+..++.|+.+++++|.++.+|..+..+++|+.+++++|.++.++...+..++.++.+.+..|.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 999998864 4789999999999999999999989999999999999999999988888888888877776554
No 23
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=6.9e-18 Score=127.90 Aligned_cols=150 Identities=21% Similarity=0.245 Sum_probs=118.8
Q ss_pred CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCce
Q psy3785 22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLY 101 (184)
Q Consensus 22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~ 101 (184)
.+..+++|+.|++++|.+.+ +++ +..+++|++|++++|.++++|. +..+++|+.|++++|.++.++ .+..+++|+
T Consensus 63 ~~~~l~~L~~L~L~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~ 137 (291)
T 1h6t_A 63 GIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDIN-GLVHLPQLE 137 (291)
T ss_dssp TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCG-GGGGCTTCC
T ss_pred hHhcCCCCCEEEccCCccCC--Ccc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCCh-hhcCCCCCC
Confidence 46677888888888888774 333 7788888888888888888654 778888888888888888763 466788888
Q ss_pred EEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccccc
Q psy3785 102 KFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALI 180 (184)
Q Consensus 102 ~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~ 180 (184)
.|++++|.++.+ +.+..++.|+.+++++|.++.++. +..+++|+.+++++|.++.++. +..++.|+.+.++++.+
T Consensus 138 ~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 138 SLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp EEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEEEEEEE
T ss_pred EEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh--hccCCCCCEEECcCCcc
Confidence 888888888877 567788888899998888887766 7788888999999998888764 56677777777776654
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=3.9e-18 Score=140.63 Aligned_cols=154 Identities=23% Similarity=0.306 Sum_probs=130.4
Q ss_pred cccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCch-hhhCCCCCCEEEcccCccccchh-
Q psy3785 15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPD-EIRHLTNLNELALNNNQLEMINE- 92 (184)
Q Consensus 15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~~- 92 (184)
.+.++|..+ .+.++.|++++|.+.. ..+..+.++++|++|++++|.++++|+ .|.++++|++|++++|+++.+|.
T Consensus 42 ~l~~vP~~l--p~~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 42 NFYKIPDNL--PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 118 (635)
T ss_dssp CCSSCCSSS--CTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred CcCccCCCC--CcCCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence 456677655 3589999999999884 445689999999999999999999865 58999999999999999998874
Q ss_pred hhcCCCCceEEEccccccccchh-hhcCCCCCCEEEccCCCCCC--cchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhc
Q psy3785 93 AVYDLPHLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIES--LPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169 (184)
Q Consensus 93 ~~~~l~~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~--l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~ 169 (184)
.+..+.+|++|++++|.++.+++ .+++++.|+.|++++|.++. +|..++.++.|+.+++++|.+++++...+..+..
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 198 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 198 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhh
Confidence 56789999999999999998865 58999999999999999984 5677889999999999999999976655555544
Q ss_pred cc
Q psy3785 170 NR 171 (184)
Q Consensus 170 l~ 171 (184)
+.
T Consensus 199 l~ 200 (635)
T 4g8a_A 199 MP 200 (635)
T ss_dssp CT
T ss_pred hh
Confidence 43
No 25
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=3.8e-18 Score=124.36 Aligned_cols=142 Identities=19% Similarity=0.299 Sum_probs=122.5
Q ss_pred ccccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCccccchh
Q psy3785 14 ARLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINE 92 (184)
Q Consensus 14 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~ 92 (184)
..+..+|..+. +.++.|++++|.+.. ..+..+..+++|++|++++|.++.+ |..+..+++|++|++++|.++.+|.
T Consensus 21 ~~l~~iP~~l~--~~l~~L~l~~n~i~~-i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 97 (220)
T 2v9t_B 21 KGLTEIPTNLP--ETITEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPK 97 (220)
T ss_dssp SCCSSCCSSCC--TTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred CCcCcCCCccC--cCCCEEECCCCcCCC-cCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCH
Confidence 34555666553 789999999999875 4455788899999999999999996 7789999999999999999998886
Q ss_pred h-hcCCCCceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCcch-hhhcCCCCCEEeccCCCCCC
Q psy3785 93 A-VYDLPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESLPE-NIGYMKSLTHIDASHNTISY 158 (184)
Q Consensus 93 ~-~~~l~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~L~~n~l~~ 158 (184)
. +..+++|+.|++++|.++.+ +..+..++.|+.+++++|.++.++. .+..+++|+.+++++|++..
T Consensus 98 ~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 98 SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred hHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 5 46799999999999999977 5678899999999999999998875 47789999999999999977
No 26
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=6.7e-18 Score=131.55 Aligned_cols=152 Identities=22% Similarity=0.292 Sum_probs=127.1
Q ss_pred cccccccCCCcCccccEEEeecCCCCCCCCccccc-CCCCccEEEecCCccccCc-hhhhCCCCCCEEEcccCccccchh
Q psy3785 15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSE-PVLKLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEMINE 92 (184)
Q Consensus 15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~~ 92 (184)
.+..+|..+ .+.++.|++++|.+.. ..+..+. .+++|+.|++++|.++.++ ..+..+++|+.|++++|.++.++.
T Consensus 29 ~l~~iP~~~--~~~l~~L~Ls~N~l~~-l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~ 105 (361)
T 2xot_A 29 QLPNVPQSL--PSYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDE 105 (361)
T ss_dssp CCSSCCSSC--CTTCSEEECCSSCCCE-ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CcCccCccC--CCCCCEEECCCCCCCc-cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCH
Confidence 455566544 3468999999999875 4455565 8999999999999999975 558999999999999999998864
Q ss_pred -hhcCCCCceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCcchhh----hcCCCCCEEeccCCCCCCCcHHHhhh
Q psy3785 93 -AVYDLPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESLPENI----GYMKSLTHIDASHNTISYVPWKLFSK 166 (184)
Q Consensus 93 -~~~~l~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l~~~~----~~~~~L~~l~L~~n~l~~~~~~~~~~ 166 (184)
.+..+++|+.|++++|.++.+ +..+.+++.|+.|++++|.++.+|... ..+++|+.++|++|.|+.+|...+..
T Consensus 106 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 185 (361)
T 2xot_A 106 FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHH
T ss_pred HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhh
Confidence 567899999999999999977 567999999999999999999998764 56899999999999999999776666
Q ss_pred hhc
Q psy3785 167 FHQ 169 (184)
Q Consensus 167 ~~~ 169 (184)
++.
T Consensus 186 l~~ 188 (361)
T 2xot_A 186 LPA 188 (361)
T ss_dssp SCH
T ss_pred ccH
Confidence 554
No 27
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=4.8e-18 Score=127.49 Aligned_cols=153 Identities=23% Similarity=0.302 Sum_probs=130.0
Q ss_pred ccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCc-hhhhCCCCCCEEEcccCccccch-hh
Q psy3785 16 LVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEMIN-EA 93 (184)
Q Consensus 16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~-~~ 93 (184)
+..+|..+ .+.++.|++++|.+.. ..+..+..+++|++|++++|.+++++ ..+..+++|++|++++|.++.++ ..
T Consensus 19 l~~ip~~l--~~~l~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 19 FYKIPDNL--PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp CSSCCSSS--CTTCCEEECTTCCCCE-ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred ccccCCCC--CCCccEEECCCCcccc-cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh
Confidence 44455544 3579999999999875 34558889999999999999999975 46889999999999999999776 56
Q ss_pred hcCCCCceEEEccccccccchh-hhcCCCCCCEEEccCCCCCC--cchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcc
Q psy3785 94 VYDLPHLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIES--LPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQN 170 (184)
Q Consensus 94 ~~~l~~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~--l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l 170 (184)
+..+++|++|++++|.++.++. .+..++.|+.+++++|.++. +|..+..+++|+.+++++|.+++++...+..+..+
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence 7789999999999999998754 68899999999999999986 67889999999999999999999777666666655
Q ss_pred c
Q psy3785 171 R 171 (184)
Q Consensus 171 ~ 171 (184)
+
T Consensus 176 ~ 176 (276)
T 2z62_A 176 P 176 (276)
T ss_dssp T
T ss_pred c
Confidence 5
No 28
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.77 E-value=6.3e-18 Score=143.27 Aligned_cols=162 Identities=23% Similarity=0.277 Sum_probs=123.5
Q ss_pred ccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc-CchhhhCCCCCCEEEcccCccc-cchhhhc
Q psy3785 18 SLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVY 95 (184)
Q Consensus 18 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~ 95 (184)
.++..+..++.|+.|++++|.+.+ .+|..+..+++|++|++++|.+++ +|..+..+++|++|++++|.++ .+|..+.
T Consensus 457 ~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 535 (768)
T 3rgz_A 457 EIPQELMYVKTLETLILDFNDLTG-EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred cCCHHHcCCCCceEEEecCCcccC-cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence 345556667777777777777766 567777788888888888888875 6777888888888888888877 6677777
Q ss_pred CCCCceEEEccccccc-cchhhh---------------------------------------------------------
Q psy3785 96 DLPHLYKFNVSNNMIA-KISDNI--------------------------------------------------------- 117 (184)
Q Consensus 96 ~l~~l~~L~l~~n~~~-~~~~~~--------------------------------------------------------- 117 (184)
.+++|+.|++++|.++ .+|..+
T Consensus 536 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 615 (768)
T 3rgz_A 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615 (768)
T ss_dssp GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCT
T ss_pred CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccc
Confidence 8888888888888766 444322
Q ss_pred -------------cCCCCCCEEEccCCCCC-CcchhhhcCCCCCEEeccCCCCCC-CcHHHhhhhhccccccccccccc
Q psy3785 118 -------------GNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTISY-VPWKLFSKFHQNRSSRFGCALIM 181 (184)
Q Consensus 118 -------------~~~~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~L~~n~l~~-~~~~~~~~~~~l~~~~~~~~~~~ 181 (184)
+.++.++.+++++|.++ .+|..++.++.|+.+++++|.+++ +|. .+..++.|+.+.++.|.+.
T Consensus 616 ~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~-~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD-EVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp TSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCE
T ss_pred ccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh-HHhCCCCCCEEECCCCccc
Confidence 23456788899999888 778888999999999999999997 665 4466778888888877653
No 29
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=1.4e-18 Score=132.12 Aligned_cols=160 Identities=18% Similarity=0.181 Sum_probs=88.5
Q ss_pred ccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCcccc--chhhh
Q psy3785 18 SLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEM--INEAV 94 (184)
Q Consensus 18 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~--~~~~~ 94 (184)
.++..+..+++|+.|++++|.+........+..+++|++|++++|.+... +..+..+++|++|++++|.++. +|..+
T Consensus 92 ~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 171 (306)
T 2z66_A 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171 (306)
T ss_dssp EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH
Confidence 34444555566666666666554322223555566666666666666553 3445556666666666666553 45555
Q ss_pred cCCCCceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCcch-hhhcCCCCCEEeccCCCCCCCcHHHhhhh-hccc
Q psy3785 95 YDLPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESLPE-NIGYMKSLTHIDASHNTISYVPWKLFSKF-HQNR 171 (184)
Q Consensus 95 ~~l~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~L~~n~l~~~~~~~~~~~-~~l~ 171 (184)
..+++|++|++++|.++.+ |..+..++.|+.+++++|.++.++. .+..+++|+.+++++|.+++.+...+... ..++
T Consensus 172 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~ 251 (306)
T 2z66_A 172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 251 (306)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCC
T ss_pred hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCC
Confidence 5566666666666666654 4455666666666666666665543 34556666666666666666333222222 3455
Q ss_pred cccccc
Q psy3785 172 SSRFGC 177 (184)
Q Consensus 172 ~~~~~~ 177 (184)
.+.++.
T Consensus 252 ~L~L~~ 257 (306)
T 2z66_A 252 FLNLTQ 257 (306)
T ss_dssp EEECTT
T ss_pred EEEccC
Confidence 444443
No 30
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=135.14 Aligned_cols=158 Identities=18% Similarity=0.207 Sum_probs=117.4
Q ss_pred CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hhCCCCCCEEEcccCccccchh--hhcCCC
Q psy3785 22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINE--AVYDLP 98 (184)
Q Consensus 22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~l~ 98 (184)
.+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++++|.. +..+++|++|++++|.++.+|. .+..++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~ 149 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT 149 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCT
T ss_pred HhccCCCCCEEECCCCccCc-cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCC
Confidence 56777788888888777664 4456677778888888888888877655 6777888888888888777765 455677
Q ss_pred CceEEEcccc-ccccc-hhhhcCCCCCCEEEccCCCCCCc-chhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccc
Q psy3785 99 HLYKFNVSNN-MIAKI-SDNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRF 175 (184)
Q Consensus 99 ~l~~L~l~~n-~~~~~-~~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~ 175 (184)
+|++|++++| .++.+ +..+..++.|+.+++++|.++.+ |..+..+++|+.+++++|.++.+|...+...+.++.+.+
T Consensus 150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 229 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229 (353)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEE
T ss_pred CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEEC
Confidence 8888888877 46655 35677778888888888887755 566777788888888888887777777777777777777
Q ss_pred ccccc
Q psy3785 176 GCALI 180 (184)
Q Consensus 176 ~~~~~ 180 (184)
+.+.+
T Consensus 230 ~~n~l 234 (353)
T 2z80_A 230 RDTDL 234 (353)
T ss_dssp ESCBC
T ss_pred CCCcc
Confidence 66554
No 31
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=3.8e-18 Score=127.57 Aligned_cols=149 Identities=21% Similarity=0.286 Sum_probs=111.8
Q ss_pred CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCce
Q psy3785 22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLY 101 (184)
Q Consensus 22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~ 101 (184)
.+..++.|+.|++++|.+.. ++ .+..+++|+.|++++|.+++++. +..+++|+.|++++|+++.+|.... ++|+
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~ 109 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLS 109 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCC
T ss_pred chhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--Cccc
Confidence 45677888888888887763 34 57778888888888888888766 7788888888888888887764322 7788
Q ss_pred EEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccccc
Q psy3785 102 KFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALI 180 (184)
Q Consensus 102 ~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~ 180 (184)
.|++++|.++.++ .+..++.|+.+++++|.++.++ .+..+++|+.+++++|.++++ ..+..++.|+.+.++++.+
T Consensus 110 ~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 110 RLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp EEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred EEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence 8888888887764 4777888888888888888775 467788888888888888877 3445566676666665543
No 32
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=1.2e-18 Score=148.94 Aligned_cols=164 Identities=16% Similarity=0.207 Sum_probs=124.8
Q ss_pred cccccccCCCcCccccEEEeecCCCCCC----------------CCccccc--CCCCccEEEecCCcccc-CchhhhCCC
Q psy3785 15 RLVSLVGSASASALLYTYEISSDTGSGE----------------SNMSQSE--PVLKLKVLNLQYNNLKG-LPDEIRHLT 75 (184)
Q Consensus 15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~----------------~~~~~~~--~l~~L~~L~l~~n~l~~-lp~~~~~l~ 75 (184)
.+..+|..++.+++|+.|++++|.+.++ .+|+.++ .+++|+.|++++|.+.+ +|..+.+++
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~ 515 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS
T ss_pred cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCC
Confidence 4445777888888999999999887752 2788877 88889999998888665 788888888
Q ss_pred CCCEEEcccCc-ccc--chhhhcC-------CCCceEEEccccccccchh--hhcCCCCCCEEEccCCCCCCcchhhhcC
Q psy3785 76 NLNELALNNNQ-LEM--INEAVYD-------LPHLYKFNVSNNMIAKISD--NIGNLTSLLVLNISNNKIESLPENIGYM 143 (184)
Q Consensus 76 ~L~~L~l~~n~-l~~--~~~~~~~-------l~~l~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~l~~l~~~~~~~ 143 (184)
+|+.|++++|+ ++. +|..+.. +++|+.|++++|.++.+|. .++.++.|+.|++++|.++.+| .++.+
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L 594 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTN 594 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTT
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCC
Confidence 88888888887 774 6654443 3488888888888887777 7888888888888888888777 67777
Q ss_pred CCCCEEeccCCCCCCCcHHHhhhhhc-ccccccccccc
Q psy3785 144 KSLTHIDASHNTISYVPWKLFSKFHQ-NRSSRFGCALI 180 (184)
Q Consensus 144 ~~L~~l~L~~n~l~~~~~~~~~~~~~-l~~~~~~~~~~ 180 (184)
++|+.+++++|.++.+|..+.. ++. |+.+.++.+.+
T Consensus 595 ~~L~~L~Ls~N~l~~lp~~l~~-l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 595 VKLTDLKLDYNQIEEIPEDFCA-FTDQVEGLGFSHNKL 631 (876)
T ss_dssp SEESEEECCSSCCSCCCTTSCE-ECTTCCEEECCSSCC
T ss_pred CcceEEECcCCccccchHHHhh-ccccCCEEECcCCCC
Confidence 7888888888888877765433 334 66666665543
No 33
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.76 E-value=3.4e-19 Score=148.26 Aligned_cols=162 Identities=13% Similarity=0.189 Sum_probs=115.2
Q ss_pred cccccccCCCcCccccEEEeecCCCCCCC-----------------Cccccc--CCCCccEEEecCCcccc-CchhhhCC
Q psy3785 15 RLVSLVGSASASALLYTYEISSDTGSGES-----------------NMSQSE--PVLKLKVLNLQYNNLKG-LPDEIRHL 74 (184)
Q Consensus 15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~n~l~~-lp~~~~~l 74 (184)
.+..+|..++.+++|+.|++++|.+.+ . +|+.++ ++++|++|++++|.+.+ +|..+.++
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNSPFVA-ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCG-GGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCccCCHHHhcccCCCEEECcCCcccc-ccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 455577778888888888888888775 2 788877 88888888888888776 68778888
Q ss_pred CCCCEEEcccCc-ccc--chhhhcCC------CCceEEEccccccccchh--hhcCCCCCCEEEccCCCCC-Ccchhhhc
Q psy3785 75 TNLNELALNNNQ-LEM--INEAVYDL------PHLYKFNVSNNMIAKISD--NIGNLTSLLVLNISNNKIE-SLPENIGY 142 (184)
Q Consensus 75 ~~L~~L~l~~n~-l~~--~~~~~~~l------~~l~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~l~-~l~~~~~~ 142 (184)
++|++|++++|+ ++. +|..+..+ ++|+.|++++|.++.+|. .++.++.|+.+++++|.++ .+| .++.
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~ 351 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS 351 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCC
Confidence 888888888887 773 67666554 778888888888777776 7777888888888887777 666 5555
Q ss_pred CCCCCEEeccCCCCCCCcHHHhhhhhc-cccccccccc
Q psy3785 143 MKSLTHIDASHNTISYVPWKLFSKFHQ-NRSSRFGCAL 179 (184)
Q Consensus 143 ~~~L~~l~L~~n~l~~~~~~~~~~~~~-l~~~~~~~~~ 179 (184)
+++|+.+++++|.++.+|..+ ..+.. |+.+.++.+.
T Consensus 352 l~~L~~L~L~~N~l~~lp~~l-~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 352 EIKLASLNLAYNQITEIPANF-CGFTEQVENLSFAHNK 388 (636)
T ss_dssp EEEESEEECCSSEEEECCTTS-EEECTTCCEEECCSSC
T ss_pred CCCCCEEECCCCccccccHhh-hhhcccCcEEEccCCc
Confidence 556666666666665555542 22333 5444444443
No 34
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=7.1e-18 Score=134.92 Aligned_cols=158 Identities=20% Similarity=0.243 Sum_probs=85.0
Q ss_pred cCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hhCCCCCCEEEcccCccccchh-hhcCCC
Q psy3785 21 GSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINE-AVYDLP 98 (184)
Q Consensus 21 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~l~ 98 (184)
..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++.+|.. +..+++|++|++++|.++.+|. .+..++
T Consensus 93 ~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 171 (452)
T 3zyi_A 93 DTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP 171 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred HHcCCCCCCCEEECCCCccCC-cChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCC
Confidence 445666677777777766654 3445666666777777777766666443 5566667777777666665543 333444
Q ss_pred CceEEEcccc-ccccchh-hhcCCCCCCEEEccCCCCCCcc-----------------------hhhhcCCCCCEEeccC
Q psy3785 99 HLYKFNVSNN-MIAKISD-NIGNLTSLLVLNISNNKIESLP-----------------------ENIGYMKSLTHIDASH 153 (184)
Q Consensus 99 ~l~~L~l~~n-~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~-----------------------~~~~~~~~L~~l~L~~ 153 (184)
+|+.|++++| .++.++. .+.+++.|+.+++++|.++.+| ..+..+++|+.+++++
T Consensus 172 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 251 (452)
T 3zyi_A 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251 (452)
T ss_dssp TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTT
T ss_pred cccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCC
Confidence 5555555442 2333322 3444444555555444444443 3344445555555555
Q ss_pred CCCCCCcHHHhhhhhccccccccccc
Q psy3785 154 NTISYVPWKLFSKFHQNRSSRFGCAL 179 (184)
Q Consensus 154 n~l~~~~~~~~~~~~~l~~~~~~~~~ 179 (184)
|.++.++...+..++.|+.+.++.|.
T Consensus 252 n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 252 SQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcCceECHHHhcCCCCCCEEECCCCc
Confidence 55555444444444555555554443
No 35
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=9.6e-18 Score=134.16 Aligned_cols=156 Identities=22% Similarity=0.270 Sum_probs=116.3
Q ss_pred cCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCch--------------------------hhhCC
Q psy3785 21 GSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPD--------------------------EIRHL 74 (184)
Q Consensus 21 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~--------------------------~~~~l 74 (184)
..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++.+|. .+..+
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l 195 (452)
T 3zyi_A 117 GAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSB-CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred hhccCcccCCEEECCCCcCCc-cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCC
Confidence 456677788888888877663 334456667777777777777766543 24445
Q ss_pred CCCCEEEcccCccccchhhhcCCCCceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCc-chhhhcCCCCCEEecc
Q psy3785 75 TNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDAS 152 (184)
Q Consensus 75 ~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~ 152 (184)
++|+.|++++|.++.+|. +..+++|+.|++++|.++.+ |..+.+++.|+.+++++|.++.+ +..+..+++|+.++++
T Consensus 196 ~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 274 (452)
T 3zyi_A 196 FNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274 (452)
T ss_dssp TTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECC
Confidence 566666666666665542 45667788888888888766 56788999999999999999966 4557889999999999
Q ss_pred CCCCCCCcHHHhhhhhcccccccccc
Q psy3785 153 HNTISYVPWKLFSKFHQNRSSRFGCA 178 (184)
Q Consensus 153 ~n~l~~~~~~~~~~~~~l~~~~~~~~ 178 (184)
+|.++.+|...+..++.++.+.++.|
T Consensus 275 ~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 275 HNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp SSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred CCcCCccChHHhccccCCCEEEccCC
Confidence 99999999888888888887776544
No 36
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.76 E-value=4.6e-19 Score=147.41 Aligned_cols=160 Identities=18% Similarity=0.259 Sum_probs=131.3
Q ss_pred cccCCC--cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCc-ccc--CchhhhCC------CCCCEEEcccCcc
Q psy3785 19 LVGSAS--ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNN-LKG--LPDEIRHL------TNLNELALNNNQL 87 (184)
Q Consensus 19 ~~~~~~--~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~--lp~~~~~l------~~L~~L~l~~n~l 87 (184)
+|..++ .+++|+.|++++|.+.+ .+|..++.+++|++|++++|. +++ +|..+..+ ++|+.|++++|.+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCS-SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred CchhhhhcccCCCCEEEecCCcCCc-cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 888888 99999999999999887 789999999999999999998 886 78888776 8999999999999
Q ss_pred ccchh--hhcCCCCceEEEccccccc-cchhhhcCCCCCCEEEccCCCCCCcchhhhcCCC-CCEEeccCCCCCCCcHHH
Q psy3785 88 EMINE--AVYDLPHLYKFNVSNNMIA-KISDNIGNLTSLLVLNISNNKIESLPENIGYMKS-LTHIDASHNTISYVPWKL 163 (184)
Q Consensus 88 ~~~~~--~~~~l~~l~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~-L~~l~L~~n~l~~~~~~~ 163 (184)
+.+|. .+..+++|+.|++++|.++ .+| .++.++.|+.+++++|.++.+|..+..++. |+.+++++|.++.+|..+
T Consensus 318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~ 396 (636)
T 4eco_A 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIF 396 (636)
T ss_dssp SSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCC
T ss_pred CccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhh
Confidence 98887 8889999999999999988 777 777788888888888888888877777887 888888888888877643
Q ss_pred hhh-hhcccccccccccc
Q psy3785 164 FSK-FHQNRSSRFGCALI 180 (184)
Q Consensus 164 ~~~-~~~l~~~~~~~~~~ 180 (184)
... +..++.+.++.+.+
T Consensus 397 ~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 397 DAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp CTTCSSCEEEEECCSSCT
T ss_pred hhcccCccCEEECcCCcC
Confidence 221 22455555554433
No 37
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=8.7e-18 Score=122.47 Aligned_cols=142 Identities=17% Similarity=0.280 Sum_probs=120.3
Q ss_pred cccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCch-hhhCCCCCCEEEcccCccccchh-
Q psy3785 15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPD-EIRHLTNLNELALNNNQLEMINE- 92 (184)
Q Consensus 15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~~- 92 (184)
.+..+|..+ .+.++.|++++|.+.....+..+..+++|+.|++++|.+++++. .+..+++|++|++++|.++.++.
T Consensus 22 ~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 99 (220)
T 2v70_A 22 KLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHK 99 (220)
T ss_dssp CCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGG
T ss_pred CcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHh
Confidence 344555544 34578999999998863334557889999999999999999754 68999999999999999998764
Q ss_pred hhcCCCCceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCc-chhhhcCCCCCEEeccCCCCCC
Q psy3785 93 AVYDLPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISY 158 (184)
Q Consensus 93 ~~~~l~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~~n~l~~ 158 (184)
.+..+++|++|++++|.++.+ |..+..++.|+.+++++|.++.+ |..+..+++|+.+++++|++.+
T Consensus 100 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 100 MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 477899999999999999977 56788999999999999999987 5678889999999999999987
No 38
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=7.1e-18 Score=134.49 Aligned_cols=137 Identities=24% Similarity=0.337 Sum_probs=72.8
Q ss_pred cCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCch-hhhCCCCCCEEEcccCccccchh-hhcCCC
Q psy3785 21 GSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPD-EIRHLTNLNELALNNNQLEMINE-AVYDLP 98 (184)
Q Consensus 21 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~ 98 (184)
..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++.+|. .+..+++|++|++++|.++.++. .+..++
T Consensus 82 ~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 160 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSRNHIRT-IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP 160 (440)
T ss_dssp TTTSSCSSCCEEECCSSCCCE-ECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCT
T ss_pred HHhhCCCCCCEEECCCCcCCc-cChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCc
Confidence 445566666666666666553 334556666666666666666666543 35666666666666666665542 333455
Q ss_pred CceEEEcccc-ccccchh-hhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCC
Q psy3785 99 HLYKFNVSNN-MIAKISD-NIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYV 159 (184)
Q Consensus 99 ~l~~L~l~~n-~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~ 159 (184)
+|++|++++| .++.++. .+.+++.|+.|++++|.++.+|. +..+++|+.+++++|.++++
T Consensus 161 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEE
T ss_pred ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCcc
Confidence 5555555542 2333322 34444555555555554444432 33344444444444444443
No 39
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=9.9e-18 Score=133.66 Aligned_cols=155 Identities=24% Similarity=0.319 Sum_probs=104.0
Q ss_pred cCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCch-hh-------------------------hCC
Q psy3785 21 GSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPD-EI-------------------------RHL 74 (184)
Q Consensus 21 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~-------------------------~~l 74 (184)
..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.+..++. .+ ..+
T Consensus 106 ~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l 184 (440)
T 3zyj_A 106 GAFNGLANLNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184 (440)
T ss_dssp GGGTTCSSCCEEECCSSCCSS-CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred hhccCCccCCEEECCCCcCCe-eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc
Confidence 455667777788877777663 334456667777777777777665433 23 444
Q ss_pred CCCCEEEcccCccccchhhhcCCCCceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCcc-hhhhcCCCCCEEecc
Q psy3785 75 TNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESLP-ENIGYMKSLTHIDAS 152 (184)
Q Consensus 75 ~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l~-~~~~~~~~L~~l~L~ 152 (184)
++|+.|++++|.++.+|. +..+++|+.|++++|.++.+ +..+.+++.|+.+++++|.++.++ ..+..+++|+.++++
T Consensus 185 ~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 185 SNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263 (440)
T ss_dssp SSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECT
T ss_pred cccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECC
Confidence 555555555555555542 44556666677777766655 456777777788888888777554 446778888888888
Q ss_pred CCCCCCCcHHHhhhhhccccccccc
Q psy3785 153 HNTISYVPWKLFSKFHQNRSSRFGC 177 (184)
Q Consensus 153 ~n~l~~~~~~~~~~~~~l~~~~~~~ 177 (184)
+|.++.++...+..++.|+.+.++.
T Consensus 264 ~N~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 264 HNNLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp TSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred CCCCCccChhHhccccCCCEEEcCC
Confidence 8888888887777777777666643
No 40
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=1.9e-17 Score=118.59 Aligned_cols=137 Identities=18% Similarity=0.211 Sum_probs=116.9
Q ss_pred ccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc-CchhhhCCCCCCEEEcccCcccc-chhh
Q psy3785 16 LVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLEM-INEA 93 (184)
Q Consensus 16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~~-~~~~ 93 (184)
+..++ .+..+++|+.|++++|.+.. ++.+..+++|++|++++|.+++ .+..+..+++|++|++++|.++. .+..
T Consensus 56 i~~l~-~l~~l~~L~~L~l~~n~~~~---~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~ 131 (197)
T 4ezg_A 56 VTDLT-GIEYAHNIKDLTINNIHATN---YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131 (197)
T ss_dssp CSCCT-TGGGCTTCSEEEEESCCCSC---CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHH
T ss_pred ccChH-HHhcCCCCCEEEccCCCCCc---chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHH
Confidence 34444 57789999999999996543 4578889999999999999997 57778999999999999999995 5677
Q ss_pred hcCCCCceEEEccccc-cccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCC
Q psy3785 94 VYDLPHLYKFNVSNNM-IAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158 (184)
Q Consensus 94 ~~~l~~l~~L~l~~n~-~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~ 158 (184)
+..+++|++|++++|. ++.++ .+..++.|+.+++++|.++.++ .+..+++|+.+++++|++..
T Consensus 132 l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 132 INTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp HTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred HhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 8899999999999998 88886 6889999999999999999887 67889999999999999865
No 41
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.75 E-value=1.5e-17 Score=124.70 Aligned_cols=155 Identities=23% Similarity=0.334 Sum_probs=135.1
Q ss_pred CCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhh-hcCCCCce
Q psy3785 23 ASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEA-VYDLPHLY 101 (184)
Q Consensus 23 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~l~ 101 (184)
...++.++.++++++.+.. .+.+..+++|++|++++|.+.+++ .+..+++|++|++++|.++.++.. +..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~---~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS---VQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC---CTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccc---ccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 3568899999999998764 345788999999999999999875 688999999999999999987654 57899999
Q ss_pred EEEccccccccchh-hhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccccc
Q psy3785 102 KFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCAL 179 (184)
Q Consensus 102 ~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~ 179 (184)
+|++++|.++.+++ .+..++.|+.+++++|.++.++.. +..+++|+.+++++|.+++++...+..++.|+.+.++.+.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 99999999998854 578999999999999999988765 6789999999999999999988888888999988888776
Q ss_pred cc
Q psy3785 180 IM 181 (184)
Q Consensus 180 ~~ 181 (184)
+.
T Consensus 193 l~ 194 (272)
T 3rfs_A 193 LK 194 (272)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 42
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.5e-17 Score=121.16 Aligned_cols=147 Identities=18% Similarity=0.244 Sum_probs=125.2
Q ss_pred cEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCch-hhhCCCCCCEEEcccCccccc-hhhhcCCCCceEEEccc
Q psy3785 30 YTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPD-EIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSN 107 (184)
Q Consensus 30 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~l~~L~l~~ 107 (184)
+.++.+++... .+|..+. +++++|++++|.++.++. .+..+++|+.|++++|.++.+ |..+..+++|++|++++
T Consensus 14 ~~v~c~~~~l~--~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT--EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS--SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC--cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 46777777665 5666543 689999999999999765 688899999999999999977 67788999999999999
Q ss_pred cccccchhh-hcCCCCCCEEEccCCCCCCcc-hhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccccc
Q psy3785 108 NMIAKISDN-IGNLTSLLVLNISNNKIESLP-ENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALI 180 (184)
Q Consensus 108 n~~~~~~~~-~~~~~~L~~l~l~~n~l~~l~-~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~ 180 (184)
|.++.+|.. +..++.|+.+++++|.++.++ ..+..+++|+.+++++|.+++++...+..++.++.+.++.|.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 999988754 688999999999999999774 5688899999999999999999888888888888777765543
No 43
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=2.1e-18 Score=147.49 Aligned_cols=160 Identities=19% Similarity=0.226 Sum_probs=136.0
Q ss_pred cccCCC--cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCc-ccc--CchhhhCCC-------CCCEEEcccCc
Q psy3785 19 LVGSAS--ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNN-LKG--LPDEIRHLT-------NLNELALNNNQ 86 (184)
Q Consensus 19 ~~~~~~--~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~--lp~~~~~l~-------~L~~L~l~~n~ 86 (184)
+|..++ .+++|+.|++++|.+.+ .+|..+..+++|+.|++++|. +++ +|..+..++ +|+.|++++|.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~-~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMT-QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCC-SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCCCCCc-cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 788877 99999999999999887 789999999999999999998 886 787776665 99999999999
Q ss_pred cccchh--hhcCCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCC-CCEEeccCCCCCCCcHHH
Q psy3785 87 LEMINE--AVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKS-LTHIDASHNTISYVPWKL 163 (184)
Q Consensus 87 l~~~~~--~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~-L~~l~L~~n~l~~~~~~~ 163 (184)
++.+|. .+..+++|+.|++++|.++.+| .++.++.|+.+++++|.++.+|..+..++. |+.+++++|.++.+|..+
T Consensus 560 L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~ 638 (876)
T 4ecn_A 560 LEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIF 638 (876)
T ss_dssp CCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCC
T ss_pred CCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhh
Confidence 999988 8899999999999999999888 789999999999999999999988888888 999999999999888543
Q ss_pred hhhh-hcccccccccccc
Q psy3785 164 FSKF-HQNRSSRFGCALI 180 (184)
Q Consensus 164 ~~~~-~~l~~~~~~~~~~ 180 (184)
.... ..|+.+.++.+.+
T Consensus 639 ~~~~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 639 NAKSVYVMGSVDFSYNKI 656 (876)
T ss_dssp CTTCSSCEEEEECCSSCT
T ss_pred hccccCCCCEEECcCCcC
Confidence 2211 2255555554443
No 44
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=6e-18 Score=129.28 Aligned_cols=151 Identities=16% Similarity=0.165 Sum_probs=78.2
Q ss_pred CcCccccEEEeecCCCCCCCCcccccCC-----CCccEEEecCCccccCc-hhhhCCCCCCEEEcccCcccc---chhhh
Q psy3785 24 SASALLYTYEISSDTGSGESNMSQSEPV-----LKLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEM---INEAV 94 (184)
Q Consensus 24 ~~~~~l~~l~l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~---~~~~~ 94 (184)
..+++|+.|++++|.+.+. |..+..+ ++|++|++++|.+++++ ..+..+++|++|++++|++.. ++..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR--DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS--SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred hcCCCccEEEccCCCCcch--hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 5566666666666665542 4444444 55666666666665543 445556666666666665432 22232
Q ss_pred --cCCCCceEEEccccccccch----hhhcCCCCCCEEEccCCCCCCcc--hhhhcCCCCCEEeccCCCCCCCcHHHhhh
Q psy3785 95 --YDLPHLYKFNVSNNMIAKIS----DNIGNLTSLLVLNISNNKIESLP--ENIGYMKSLTHIDASHNTISYVPWKLFSK 166 (184)
Q Consensus 95 --~~l~~l~~L~l~~n~~~~~~----~~~~~~~~L~~l~l~~n~l~~l~--~~~~~~~~L~~l~L~~n~l~~~~~~~~~~ 166 (184)
..+++|++|++++|.++.++ ..+..++.|+.+++++|.++..+ ..+..+++|+.+++++|.++.+|..++
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-- 273 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-- 273 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--
Confidence 44556666666666555322 12234555566666665555432 223334555555555555555554433
Q ss_pred hhccccccccccc
Q psy3785 167 FHQNRSSRFGCAL 179 (184)
Q Consensus 167 ~~~l~~~~~~~~~ 179 (184)
+.++.+.++.|.
T Consensus 274 -~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 274 -AKLSVLDLSYNR 285 (312)
T ss_dssp -SEEEEEECCSSC
T ss_pred -CCceEEECCCCC
Confidence 444444444443
No 45
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.75 E-value=1.7e-17 Score=134.56 Aligned_cols=154 Identities=19% Similarity=0.312 Sum_probs=130.0
Q ss_pred CcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc---CchhhhCCCCCCEEEcccCcccc-chhh-hcCCC
Q psy3785 24 SASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG---LPDEIRHLTNLNELALNNNQLEM-INEA-VYDLP 98 (184)
Q Consensus 24 ~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---lp~~~~~l~~L~~L~l~~n~l~~-~~~~-~~~l~ 98 (184)
..++.|+.|++++|.+.+ .+|..+..+++|++|++++|.+++ +|..+..+++|++|++++|.++. +|.. +..++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTD-TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCT-TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccCh-hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 578899999999999886 568888999999999999999996 45678899999999999999996 8764 56788
Q ss_pred CceEEEccccccc-cchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccc
Q psy3785 99 HLYKFNVSNNMIA-KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGC 177 (184)
Q Consensus 99 ~l~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~ 177 (184)
+|+.|++++|.++ .+|..+. +.|+.+++++|.++.+|..+..+++|+.+++++|.++.+|...+..++.++.+.++.
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcC
Confidence 9999999999986 3444443 689999999999999998888999999999999999999887777778888777765
Q ss_pred ccc
Q psy3785 178 ALI 180 (184)
Q Consensus 178 ~~~ 180 (184)
|.+
T Consensus 478 N~~ 480 (520)
T 2z7x_B 478 NPW 480 (520)
T ss_dssp SCB
T ss_pred CCC
Confidence 544
No 46
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.75 E-value=6.8e-18 Score=139.22 Aligned_cols=161 Identities=20% Similarity=0.179 Sum_probs=107.3
Q ss_pred ccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc-CchhhhCCCCCCEEEcccCcccc--chh
Q psy3785 16 LVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLEM--INE 92 (184)
Q Consensus 16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~~--~~~ 92 (184)
+..++..+..+++|+.|++++|.+.+......+..+++|++|++++|.+.+ .|..+..+++|++|++++|.++. +|.
T Consensus 388 l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 467 (606)
T 3vq2_A 388 AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467 (606)
T ss_dssp EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH
Confidence 344556666777777777777776652222566677777777777777776 35566777777777777777764 456
Q ss_pred hhcCCCCceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCc-chhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcc
Q psy3785 93 AVYDLPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISYVPWKLFSKFHQN 170 (184)
Q Consensus 93 ~~~~l~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l 170 (184)
.+..+++|+.|++++|.++.+ |..+..++.|+.+++++|.++.+ |..+..+++|+.+++++|.++.+|..+......+
T Consensus 468 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L 547 (606)
T 3vq2_A 468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSL 547 (606)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTC
T ss_pred hhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccC
Confidence 666677777777777777755 45567777777777777777755 5556777777777777777777766533322345
Q ss_pred cccccc
Q psy3785 171 RSSRFG 176 (184)
Q Consensus 171 ~~~~~~ 176 (184)
+.+.++
T Consensus 548 ~~l~l~ 553 (606)
T 3vq2_A 548 AFFNLT 553 (606)
T ss_dssp CEEECC
T ss_pred cEEEcc
Confidence 555554
No 47
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=3.2e-18 Score=130.81 Aligned_cols=150 Identities=20% Similarity=0.187 Sum_probs=127.8
Q ss_pred ccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc---Cchhh--hCCCCCCEEEcccCccccc---hhh-hcCC
Q psy3785 27 ALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG---LPDEI--RHLTNLNELALNNNQLEMI---NEA-VYDL 97 (184)
Q Consensus 27 ~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---lp~~~--~~l~~L~~L~l~~n~l~~~---~~~-~~~l 97 (184)
++|++|++++|.+.. ..+..+..+++|++|++++|.+.+ +|..+ ..+++|++|++++|.++.+ +.. +..+
T Consensus 149 ~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l 227 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227 (312)
T ss_dssp TTCCEEEEESCSCCC-CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeeCCCCcc-chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC
Confidence 899999999999876 556889999999999999999775 34455 7899999999999999944 333 3478
Q ss_pred CCceEEEccccccccch--hhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccc
Q psy3785 98 PHLYKFNVSNNMIAKIS--DNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRF 175 (184)
Q Consensus 98 ~~l~~L~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~ 175 (184)
++|+.|++++|.++..+ ..+..++.|+.+++++|.++.+|..+. ++|+.+++++|.++++|. +..++.++.+.+
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L 303 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS--PDELPQVGNLSL 303 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC--TTTSCEEEEEEC
T ss_pred CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh--HhhCCCCCEEec
Confidence 99999999999998654 456678999999999999999988666 889999999999999976 678899999999
Q ss_pred cccccc
Q psy3785 176 GCALIM 181 (184)
Q Consensus 176 ~~~~~~ 181 (184)
+.|.+.
T Consensus 304 ~~N~l~ 309 (312)
T 1wwl_A 304 KGNPFL 309 (312)
T ss_dssp TTCTTT
T ss_pred cCCCCC
Confidence 888764
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=2.3e-18 Score=130.99 Aligned_cols=138 Identities=22% Similarity=0.279 Sum_probs=99.3
Q ss_pred CcccccCCCCccEEEecCCccccCch--hhhCCCCCCEEEcccCccccc-hhhhcCCCCceEEEcccccccc--chhhhc
Q psy3785 44 NMSQSEPVLKLKVLNLQYNNLKGLPD--EIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIAK--ISDNIG 118 (184)
Q Consensus 44 ~~~~~~~l~~L~~L~l~~n~l~~lp~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~l~~L~l~~n~~~~--~~~~~~ 118 (184)
+|..+..+++|++|++++|.+++++. .+..+++|++|++++|.++.. +..+..+++|++|++++|.++. +|..+.
T Consensus 93 l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 172 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172 (306)
T ss_dssp EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHh
Confidence 34445566667777777776666543 466677777777777777644 3445567778888888887764 466777
Q ss_pred CCCCCCEEEccCCCCCCc-chhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccccccc
Q psy3785 119 NLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALIM 181 (184)
Q Consensus 119 ~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (184)
.++.|+.+++++|.++.+ |..+..+++|+.+++++|.+++++...+..++.|+.+.++.+.+.
T Consensus 173 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence 888888888888888866 456777888888888888888877666677778887777766553
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.74 E-value=2.6e-17 Score=126.43 Aligned_cols=155 Identities=19% Similarity=0.249 Sum_probs=76.9
Q ss_pred CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccch-hhhcCCCCc
Q psy3785 22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMIN-EAVYDLPHL 100 (184)
Q Consensus 22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l 100 (184)
.+..+++|+.|++++|.+.. ..|..+..+++|++|++++|.++.+|..+. ++|++|++++|.++.++ ..+..+++|
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L 147 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQM 147 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTC
T ss_pred hhccCCCCCEEECCCCcCCe-eCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccc
Confidence 34555666666666665553 335555556666666666665555544332 34555555555544433 234445555
Q ss_pred eEEEcccccccc---chhhhcCCCCCCEEEccCCC---------------------CCCc-chhhhcCCCCCEEeccCCC
Q psy3785 101 YKFNVSNNMIAK---ISDNIGNLTSLLVLNISNNK---------------------IESL-PENIGYMKSLTHIDASHNT 155 (184)
Q Consensus 101 ~~L~l~~n~~~~---~~~~~~~~~~L~~l~l~~n~---------------------l~~l-~~~~~~~~~L~~l~L~~n~ 155 (184)
+.|++++|.++. .+..+..++.|+.+++++|. ++.+ +..+..+++|+.+++++|.
T Consensus 148 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 227 (330)
T 1xku_A 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227 (330)
T ss_dssp CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC
T ss_pred cEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 555555555431 12334444444444444443 3332 2334455555555555555
Q ss_pred CCCCcHHHhhhhhccccccccccc
Q psy3785 156 ISYVPWKLFSKFHQNRSSRFGCAL 179 (184)
Q Consensus 156 l~~~~~~~~~~~~~l~~~~~~~~~ 179 (184)
+++++...+..++.++.+.++.+.
T Consensus 228 l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 228 ISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp CCEECTTTGGGSTTCCEEECCSSC
T ss_pred CceeChhhccCCCCCCEEECCCCc
Confidence 555444444445555555554443
No 50
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=6.3e-18 Score=124.40 Aligned_cols=149 Identities=19% Similarity=0.199 Sum_probs=124.6
Q ss_pred cccccc-CCCcCccccEEEeec-CCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCC---EEEcccC-cccc
Q psy3785 16 LVSLVG-SASASALLYTYEISS-DTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLN---ELALNNN-QLEM 89 (184)
Q Consensus 16 ~~~~~~-~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~---~L~l~~n-~l~~ 89 (184)
+..++. .+..+++|+.|++++ |.+.. ..+..+..+++|++|++++|.++++|. +..+++++ +|++++| .++.
T Consensus 68 l~~i~~~~f~~l~~L~~L~l~~~n~l~~-i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~ 145 (239)
T 2xwt_C 68 LQQLESHSFYNLSKVTHIEIRNTRNLTY-IDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTS 145 (239)
T ss_dssp CCEECTTTEESCTTCCEEEEEEETTCCE-ECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCE
T ss_pred cceeCHhHcCCCcCCcEEECCCCCCeeE-cCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhh
Confidence 445554 567899999999998 77764 445678889999999999999999987 88888888 9999999 9998
Q ss_pred chh-hhcCCCCce-EEEccccccccchhhhcCCCCCCEEEccCCC-CCCcch-hhhcC-CCCCEEeccCCCCCCCcHHHh
Q psy3785 90 INE-AVYDLPHLY-KFNVSNNMIAKISDNIGNLTSLLVLNISNNK-IESLPE-NIGYM-KSLTHIDASHNTISYVPWKLF 164 (184)
Q Consensus 90 ~~~-~~~~l~~l~-~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~-l~~l~~-~~~~~-~~L~~l~L~~n~l~~~~~~~~ 164 (184)
+|. .+..+++++ .+++++|.++.+|......+.|+.+++++|. ++.++. .+..+ ++|+.+++++|.++.+|...+
T Consensus 146 i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~ 225 (239)
T 2xwt_C 146 IPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL 225 (239)
T ss_dssp ECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTC
T ss_pred cCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHh
Confidence 875 467899999 9999999999887654444899999999995 998865 46778 899999999999999987644
Q ss_pred hh
Q psy3785 165 SK 166 (184)
Q Consensus 165 ~~ 166 (184)
..
T Consensus 226 ~~ 227 (239)
T 2xwt_C 226 EH 227 (239)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 51
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.74 E-value=6.8e-17 Score=116.45 Aligned_cols=143 Identities=23% Similarity=0.304 Sum_probs=120.8
Q ss_pred cccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hhCCCCCCEEEcccCccccchhh
Q psy3785 15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINEA 93 (184)
Q Consensus 15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~ 93 (184)
.+..++..+ .+.++.|++++|.+.. ..+..+..+++|++|++++|.++++|.. +..+++|++|++++|.++.++..
T Consensus 18 ~l~~~p~~~--~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 94 (208)
T 2o6s_A 18 GRTSVPTGI--PAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG 94 (208)
T ss_dssp CCSSCCSCC--CTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CccCCCCCC--CCCCcEEEcCCCccCc-CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHh
Confidence 344455444 5689999999999874 4455678899999999999999998655 68899999999999999988754
Q ss_pred -hcCCCCceEEEccccccccchh-hhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCC-Cc
Q psy3785 94 -VYDLPHLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISY-VP 160 (184)
Q Consensus 94 -~~~l~~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~-~~ 160 (184)
+..+++|++|++++|.++.++. .+..++.|+.+++++|.++.++.. +..+++|+.+++++|++.+ .|
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 5689999999999999998865 478899999999999999988765 6789999999999999887 44
No 52
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.74 E-value=1.2e-17 Score=114.33 Aligned_cols=127 Identities=18% Similarity=0.281 Sum_probs=97.2
Q ss_pred cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCcccc-chhhhcCCCCceEE
Q psy3785 25 ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEM-INEAVYDLPHLYKF 103 (184)
Q Consensus 25 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~-~~~~~~~l~~l~~L 103 (184)
..++++.+++++|.+....+|..+..+++|++|++++|.++++ ..+..+++|++|++++|.++. +|..+..+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4577888888888877446777778888888888888888877 567778888888888888886 66665567788888
Q ss_pred Eccccccccch--hhhcCCCCCCEEEccCCCCCCcch----hhhcCCCCCEEecc
Q psy3785 104 NVSNNMIAKIS--DNIGNLTSLLVLNISNNKIESLPE----NIGYMKSLTHIDAS 152 (184)
Q Consensus 104 ~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~~l~~----~~~~~~~L~~l~L~ 152 (184)
++++|.++.++ ..+..++.|+.+++++|.++.++. .+..+++|+.++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88888887654 567778888888888888776654 46777788887765
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.74 E-value=1.7e-17 Score=127.57 Aligned_cols=140 Identities=20% Similarity=0.297 Sum_probs=97.3
Q ss_pred CCcCccccEEEeecCCCCC-CCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccc-hhhhcCCCCc
Q psy3785 23 ASASALLYTYEISSDTGSG-ESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHL 100 (184)
Q Consensus 23 ~~~~~~l~~l~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~l 100 (184)
+..++.|+.+++++|.+.. ...+..+..+++|++|++++|.++.+|..+. ++|++|++++|.++.+ +..+..+++|
T Consensus 141 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L 218 (330)
T 1xku_A 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL 218 (330)
T ss_dssp HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC
T ss_pred hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC
Confidence 3456666666666666542 1334556666777777777777776665443 5677777777777755 4566677788
Q ss_pred eEEEccccccccch-hhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHh
Q psy3785 101 YKFNVSNNMIAKIS-DNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLF 164 (184)
Q Consensus 101 ~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~ 164 (184)
+.|++++|.++.++ ..+..++.|+.+++++|.++.+|..+..++.|+.+++++|.+++++...+
T Consensus 219 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 88888888877664 35777778888888888888777777777888888888888887766554
No 54
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.74 E-value=7.8e-18 Score=128.49 Aligned_cols=152 Identities=18% Similarity=0.170 Sum_probs=89.9
Q ss_pred cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc---Cc--hhhhCCCCCCEEEcccCccccchhh----hc
Q psy3785 25 ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG---LP--DEIRHLTNLNELALNNNQLEMINEA----VY 95 (184)
Q Consensus 25 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---lp--~~~~~l~~L~~L~l~~n~l~~~~~~----~~ 95 (184)
.+++|+.|++++|.+.. ..+..+..+++|++|++++|.+.+ ++ ..+..+++|++|++++|.++.++.. +.
T Consensus 143 ~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPA-FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCC-CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcch-hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 35566666666666543 334555666666666666666543 21 1224556666666666666544431 23
Q ss_pred CCCCceEEEccccccccc-hhhhcCC---CCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccc
Q psy3785 96 DLPHLYKFNVSNNMIAKI-SDNIGNL---TSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNR 171 (184)
Q Consensus 96 ~l~~l~~L~l~~n~~~~~-~~~~~~~---~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~ 171 (184)
.+++|++|++++|.++.. |+.+..+ +.|+.+++++|.++.+|..+. ++|+.+++++|.++++|. +..++.++
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~--~~~l~~L~ 297 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ--PDELPEVD 297 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC--TTSCCCCS
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch--hhhCCCcc
Confidence 456666677777666654 5444444 467777777777766665443 567777777777776544 34556666
Q ss_pred cccccccccc
Q psy3785 172 SSRFGCALIM 181 (184)
Q Consensus 172 ~~~~~~~~~~ 181 (184)
.+.++.|.+.
T Consensus 298 ~L~L~~N~l~ 307 (310)
T 4glp_A 298 NLTLDGNPFL 307 (310)
T ss_dssp CEECSSTTTS
T ss_pred EEECcCCCCC
Confidence 6666666553
No 55
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=133.52 Aligned_cols=146 Identities=21% Similarity=0.289 Sum_probs=65.5
Q ss_pred cccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCccccchhh-hcCCCCceEEEc
Q psy3785 28 LLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINEA-VYDLPHLYKFNV 105 (184)
Q Consensus 28 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~l~~L~l 105 (184)
.++.|++++|.+.. ..+..+..+++|++|++++|.++++ |..+.++++|++|++++|.++.+|.. +..+++|++|++
T Consensus 33 ~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCcEEECCCCccce-ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 44555555554443 2233444445555555555544443 33444444555555555544444422 234444555555
Q ss_pred cccccccc-hhhhcCCCCCCEEEccCCCCCCcc-hhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccc
Q psy3785 106 SNNMIAKI-SDNIGNLTSLLVLNISNNKIESLP-ENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSR 174 (184)
Q Consensus 106 ~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l~-~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~ 174 (184)
++|.++.+ +..+..+++|+.+++++|.++.++ ..+..+++|+.+++++|.++.++...+..++.|+.+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEe
Confidence 54444433 233444444444444444444332 2334444444444444444444444443334443333
No 56
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.74 E-value=2.7e-17 Score=132.16 Aligned_cols=158 Identities=20% Similarity=0.267 Sum_probs=139.3
Q ss_pred ccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hhCCCCCCEEEcccCccccc-hhhhcCC
Q psy3785 20 VGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMI-NEAVYDL 97 (184)
Q Consensus 20 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~-~~~~~~l 97 (184)
+..+..+++|+.|++++|.+.. ..|..+..+++|+.|++++|.++.+|.. +..+++|++|++++|.++.+ +..+..+
T Consensus 49 ~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 127 (477)
T 2id5_A 49 QDEFASFPHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127 (477)
T ss_dssp TTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred HhHccCCCCCCEEECCCCccCE-eChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccc
Confidence 4578899999999999998875 5588899999999999999999998765 78899999999999999966 4667789
Q ss_pred CCceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCcch-hhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccc
Q psy3785 98 PHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESLPE-NIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRF 175 (184)
Q Consensus 98 ~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~ 175 (184)
++|+.|++++|.++.+ +..+..++.|+.+++++|.++.++. .+..+++|+.+++++|.+..++...+..+..|+.+.+
T Consensus 128 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 207 (477)
T 2id5_A 128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207 (477)
T ss_dssp TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEE
T ss_pred ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeC
Confidence 9999999999999876 5678999999999999999998875 4788999999999999999987777778888888877
Q ss_pred ccc
Q psy3785 176 GCA 178 (184)
Q Consensus 176 ~~~ 178 (184)
+.+
T Consensus 208 ~~~ 210 (477)
T 2id5_A 208 SHW 210 (477)
T ss_dssp ECC
T ss_pred CCC
Confidence 654
No 57
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.73 E-value=4.5e-17 Score=129.94 Aligned_cols=127 Identities=27% Similarity=0.415 Sum_probs=78.8
Q ss_pred ccEEEecCCcccc-CchhhhCCCCCCEEEcccCccccc-hhhhcCCCCceEEEccccccccc-hhhhcCCCCCCEEEccC
Q psy3785 54 LKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISN 130 (184)
Q Consensus 54 L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~ 130 (184)
|+.+++++|.+.+ .|..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.++.+ +..+..++.|+.+++++
T Consensus 277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 356 (455)
T 3v47_A 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence 4444444444443 234455666677777777766654 34555666777777777776655 44566677777777777
Q ss_pred CCCCCc-chhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccccc
Q psy3785 131 NKIESL-PENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALI 180 (184)
Q Consensus 131 n~l~~l-~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~ 180 (184)
|.++.+ |..+..+++|+.+++++|.++++|...+..++.|+.+.++.|.+
T Consensus 357 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 777655 44566677777777777777776666666666666666654433
No 58
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.73 E-value=2.4e-17 Score=135.90 Aligned_cols=152 Identities=20% Similarity=0.238 Sum_probs=108.2
Q ss_pred ccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCccccc-hhh
Q psy3785 16 LVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMI-NEA 93 (184)
Q Consensus 16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~-~~~ 93 (184)
+..+|..+ .+.++.|++++|.+.+ ..+..+..+++|+.|++++|.++++ |..|.++++|++|++++|.++.+ |..
T Consensus 23 l~~ip~~~--~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 99 (606)
T 3vq2_A 23 LSKVPDDI--PSSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS 99 (606)
T ss_dssp CSSCCTTS--CTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred cccCCCCC--CCCcCEEECCCCCcCE-eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh
Confidence 44555544 2677888888877764 4455677778888888888877775 45577778888888888877766 566
Q ss_pred hcCCCCceEEEccccccccch-hhhcCCCCCCEEEccCCCCC--CcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcc
Q psy3785 94 VYDLPHLYKFNVSNNMIAKIS-DNIGNLTSLLVLNISNNKIE--SLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQN 170 (184)
Q Consensus 94 ~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~--~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l 170 (184)
+..+++|++|++++|.++.++ ..+++++.|+.+++++|.++ ++|..++.+++|+.+++++|.+++++...+..+..+
T Consensus 100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179 (606)
T ss_dssp STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence 777778888888888777664 56777788888888888777 457777777888888888888777554444444433
No 59
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=6.7e-17 Score=133.48 Aligned_cols=83 Identities=25% Similarity=0.268 Sum_probs=51.6
Q ss_pred CCCceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccc
Q psy3785 97 LPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRF 175 (184)
Q Consensus 97 l~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~ 175 (184)
+++|+.|++++|.++.+ |..++.++.|+.|++++|.++.+|..+..+++|+.+++++|.++.+|..+ ..++.|+.+.+
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~-~~l~~L~~L~L 331 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYL 331 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH-HHHTTCSEEEC
T ss_pred CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCccc-ccCCCCCEEEC
Confidence 34455555555555533 44566666677777777766666655566777777777777777776654 44566666666
Q ss_pred ccccc
Q psy3785 176 GCALI 180 (184)
Q Consensus 176 ~~~~~ 180 (184)
+.+.+
T Consensus 332 ~~N~l 336 (597)
T 3oja_B 332 DHNSI 336 (597)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 55543
No 60
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.73 E-value=9e-17 Score=126.10 Aligned_cols=82 Identities=26% Similarity=0.271 Sum_probs=49.4
Q ss_pred CCceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccc
Q psy3785 98 PHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFG 176 (184)
Q Consensus 98 ~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~ 176 (184)
++|+.|++++|.++.+ |..+..++.|+.+++++|.++.++.....+++|+.+++++|.++.+|..+ ..++.|+.+.++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~L~ 326 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLD 326 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH-HHHTTCSEEECC
T ss_pred CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccc-cccCcCCEEECC
Confidence 4455555555555433 44556666666666666666666555556677777777777777766543 345566666665
Q ss_pred cccc
Q psy3785 177 CALI 180 (184)
Q Consensus 177 ~~~~ 180 (184)
.+.+
T Consensus 327 ~N~i 330 (390)
T 3o6n_A 327 HNSI 330 (390)
T ss_dssp SSCC
T ss_pred CCcc
Confidence 5543
No 61
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=8.5e-17 Score=121.90 Aligned_cols=150 Identities=19% Similarity=0.216 Sum_probs=131.8
Q ss_pred CCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceE
Q psy3785 23 ASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYK 102 (184)
Q Consensus 23 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~ 102 (184)
.+.++.|+.+++++|.+.. + +.+..+++|+.|++++|.+++++. +..+++|+.|++++|.++.++. +..+++|++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~--~-~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS--V-QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCE
T ss_pred hhhcCcccEEEccCCCccc--C-hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence 3568899999999998874 3 357889999999999999999876 8999999999999999998765 788999999
Q ss_pred EEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccccccc
Q psy3785 103 FNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALIM 181 (184)
Q Consensus 103 L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (184)
|++++|.++.+ +.+..++.|+.+++++|.++.+ ..+..+++|+.+++++|.+++++. +..++.|+.+.++.+.+.
T Consensus 117 L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 117 LSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp EECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 99999999987 4588899999999999999988 568889999999999999999876 677888998888877653
No 62
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=5.3e-17 Score=118.29 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=123.9
Q ss_pred cEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-c-hhhhCCCCCCEEEcccCccccchh-hhcCCCCceEEEcc
Q psy3785 30 YTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-P-DEIRHLTNLNELALNNNQLEMINE-AVYDLPHLYKFNVS 106 (184)
Q Consensus 30 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~l~~L~l~ 106 (184)
+.++++++.+. .+|..+. ..+++|++++|.++.+ + ..+..+++|+.|++++|.++.++. .+..+++|++|+++
T Consensus 14 ~~l~~s~n~l~--~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN--KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS--SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc--cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 57888888876 5676543 4578999999999997 3 347899999999999999998864 67789999999999
Q ss_pred ccccccch-hhhcCCCCCCEEEccCCCCCCc-chhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccccc
Q psy3785 107 NNMIAKIS-DNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALI 180 (184)
Q Consensus 107 ~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~ 180 (184)
+|.++.++ ..+..++.|+.|++++|.++.+ |..+..+++|+.+++++|.+++++...+..++.++.+.++.|.+
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 99999875 4588999999999999999977 56688899999999999999998767777788888777765543
No 63
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.73 E-value=6.7e-17 Score=126.85 Aligned_cols=107 Identities=21% Similarity=0.284 Sum_probs=88.6
Q ss_pred hhCCCCCCEEEcccCccccc-hhhhcCCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEE
Q psy3785 71 IRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHI 149 (184)
Q Consensus 71 ~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l 149 (184)
+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.++.++..+..++.|+.+++++|.++.+|..+..++.|+.+
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL 323 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEE
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEE
Confidence 44556777888888877755 56778899999999999999988877888999999999999999999888889999999
Q ss_pred eccCCCCCCCcHHHhhhhhcccccccccccc
Q psy3785 150 DASHNTISYVPWKLFSKFHQNRSSRFGCALI 180 (184)
Q Consensus 150 ~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~ 180 (184)
++++|.++.++ ...++.++.+.+..|.+
T Consensus 324 ~L~~N~i~~~~---~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 324 YLDHNSIVTLK---LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp ECCSSCCCCCC---CCTTCCCSEEECCSSCE
T ss_pred ECCCCccceeC---chhhccCCEEEcCCCCc
Confidence 99999999986 35566777776665543
No 64
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=7.7e-17 Score=133.25 Aligned_cols=150 Identities=21% Similarity=0.247 Sum_probs=122.5
Q ss_pred CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCce
Q psy3785 22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLY 101 (184)
Q Consensus 22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~ 101 (184)
.+..+++|+.|++++|.+.+ +++ +..+++|+.|++++|.+.++| .+..+++|+.|++++|.++.++ .+..+++|+
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~--~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~ 134 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTD--IKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLE 134 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCC--CGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCS
T ss_pred HHccCCCCCEEEeeCCCCCC--Chh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccC
Confidence 57788999999999998774 333 778899999999999988876 5788889999999999988764 466788999
Q ss_pred EEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccccc
Q psy3785 102 KFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALI 180 (184)
Q Consensus 102 ~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~ 180 (184)
.|++++|.++.+ ..+..++.|+.|++++|.++.++. +..++.|+.|+|++|.|++++. +..++.|+.+.+.++.+
T Consensus 135 ~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 135 SLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQEC 209 (605)
T ss_dssp EEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCSEEE
T ss_pred EEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChH--HccCCCCCEEEccCCcC
Confidence 999999988877 568888999999999999887766 7888899999999999988753 56677777777766544
No 65
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.72 E-value=8.3e-17 Score=132.72 Aligned_cols=158 Identities=20% Similarity=0.196 Sum_probs=122.0
Q ss_pred ccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCcccc--ch--hhh
Q psy3785 20 VGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEM--IN--EAV 94 (184)
Q Consensus 20 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~--~~--~~~ 94 (184)
+..+..+++|+.|++++|.+.+...+..+..+++|++|++++|.+... |..+..+++|++|++++|.++. ++ ..+
T Consensus 393 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 472 (606)
T 3t6q_A 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472 (606)
T ss_dssp TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGG
T ss_pred HHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhh
Confidence 445666777788888777776544444577788888888888888774 5567788888888888888774 22 446
Q ss_pred cCCCCceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCc-chhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccc
Q psy3785 95 YDLPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRS 172 (184)
Q Consensus 95 ~~l~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~ 172 (184)
..+++|+.|++++|.++.+ |..+..++.|+.+++++|.++.. |..+..++.| .+++++|.+++++...+..++.++.
T Consensus 473 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~ 551 (606)
T 3t6q_A 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRT 551 (606)
T ss_dssp GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSE
T ss_pred ccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCE
Confidence 6788899999999888866 56788889999999999998854 5668888889 9999999999987777777888887
Q ss_pred cccccc
Q psy3785 173 SRFGCA 178 (184)
Q Consensus 173 ~~~~~~ 178 (184)
+.++.|
T Consensus 552 L~l~~N 557 (606)
T 3t6q_A 552 INLRQN 557 (606)
T ss_dssp EECTTC
T ss_pred EeCCCC
Confidence 776544
No 66
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.72 E-value=1.7e-17 Score=135.32 Aligned_cols=153 Identities=20% Similarity=0.222 Sum_probs=112.6
Q ss_pred cCccccEEEeecCCCCCCCC---cccccCCCCccEEEecCCccccCc---hhhhCCCCCCEEEcccCccccchhhhcCCC
Q psy3785 25 ASALLYTYEISSDTGSGESN---MSQSEPVLKLKVLNLQYNNLKGLP---DEIRHLTNLNELALNNNQLEMINEAVYDLP 98 (184)
Q Consensus 25 ~~~~l~~l~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~n~l~~lp---~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~ 98 (184)
.+++|+.|++++|.+.+ .+ +..++.+++|+.|++++|.+++++ ..+..+++|++|++++|.++.+|..+..++
T Consensus 332 ~l~~L~~L~Ls~N~l~~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~ 410 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVE-EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE 410 (549)
T ss_dssp HCTTCCEEECCSSCCCH-HHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCT
T ss_pred cCccccEEEccCCcccc-ccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccc
Confidence 57788888888887765 22 233566777888888888877764 346777788888888888777777666677
Q ss_pred CceEEEccccccccchhhh------------------cCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCc
Q psy3785 99 HLYKFNVSNNMIAKISDNI------------------GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160 (184)
Q Consensus 99 ~l~~L~l~~n~~~~~~~~~------------------~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~ 160 (184)
+|++|++++|.++.++..+ ..++.|+.+++++|.++.+|. ...++.|+.+++++|.+++++
T Consensus 411 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~ 489 (549)
T 2z81_A 411 KMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVP 489 (549)
T ss_dssp TCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCC
T ss_pred cccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcC
Confidence 7777777777776544321 267788888888888888876 456888999999999999977
Q ss_pred HHHhhhhhccccccccccc
Q psy3785 161 WKLFSKFHQNRSSRFGCAL 179 (184)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~ 179 (184)
...+..++.++.+.++.|.
T Consensus 490 ~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 490 DGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp TTGGGGCTTCCEEECCSSC
T ss_pred HHHHhcCcccCEEEecCCC
Confidence 7777777888877776554
No 67
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.72 E-value=1.4e-16 Score=133.11 Aligned_cols=155 Identities=23% Similarity=0.315 Sum_probs=123.6
Q ss_pred CCCcCccccEEEeecCCCCC-CCCcccccCCCCccEEEecCCccccCch-hhhCCCCCCEEEcccCccccchh-------
Q psy3785 22 SASASALLYTYEISSDTGSG-ESNMSQSEPVLKLKVLNLQYNNLKGLPD-EIRHLTNLNELALNNNQLEMINE------- 92 (184)
Q Consensus 22 ~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~~------- 92 (184)
.+..++.|+.+++++|.... ...|..+..+++|+.|++++|.++++|. .+..+++|+.|++++|.++.++.
T Consensus 449 ~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 528 (680)
T 1ziw_A 449 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 528 (680)
T ss_dssp TTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC
T ss_pred hhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCc
Confidence 34445566666666665542 2567788889999999999999999764 47889999999999999886532
Q ss_pred --hhcCCCCceEEEccccccccchh-hhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCCCcHHHhh-hh
Q psy3785 93 --AVYDLPHLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFS-KF 167 (184)
Q Consensus 93 --~~~~l~~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~~~~~-~~ 167 (184)
.+..+++|+.|++++|.++.+|. .+.+++.|+.+++++|.++.+|.. +..++.|+.+++++|.+++++...+. .+
T Consensus 529 ~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 608 (680)
T 1ziw_A 529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608 (680)
T ss_dssp CCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHH
T ss_pred chhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccc
Confidence 25678899999999999998875 588999999999999999988765 56789999999999999998887766 67
Q ss_pred hcccccccc
Q psy3785 168 HQNRSSRFG 176 (184)
Q Consensus 168 ~~l~~~~~~ 176 (184)
+.++.+.++
T Consensus 609 ~~L~~l~l~ 617 (680)
T 1ziw_A 609 RNLTELDMR 617 (680)
T ss_dssp TTCSEEECT
T ss_pred cccCEEEcc
Confidence 777766554
No 68
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.72 E-value=3.6e-17 Score=125.85 Aligned_cols=156 Identities=19% Similarity=0.277 Sum_probs=77.3
Q ss_pred CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchh-hhcCCCCc
Q psy3785 22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINE-AVYDLPHL 100 (184)
Q Consensus 22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~l 100 (184)
.+..+++|+.|++++|.+.. ..|..+..+++|++|++++|.++.+|..+. ++|++|++++|.++.++. .+..+++|
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L 149 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISK-IHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNM 149 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCE-ECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred HhhCCCCCcEEECCCCccCc-cCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccC
Confidence 34455555555555555443 334445555555555555555555544332 455555555555554442 24455555
Q ss_pred eEEEcccccccc--c-hhhhcCC--------------------CCCCEEEccCCCCCCcc-hhhhcCCCCCEEeccCCCC
Q psy3785 101 YKFNVSNNMIAK--I-SDNIGNL--------------------TSLLVLNISNNKIESLP-ENIGYMKSLTHIDASHNTI 156 (184)
Q Consensus 101 ~~L~l~~n~~~~--~-~~~~~~~--------------------~~L~~l~l~~n~l~~l~-~~~~~~~~L~~l~L~~n~l 156 (184)
+.|++++|.++. . +..+..+ +.|+.+++++|.++.++ ..+..+++|+.+++++|.+
T Consensus 150 ~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l 229 (332)
T 2ft3_A 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229 (332)
T ss_dssp CEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCC
T ss_pred CEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 555555555532 1 2222222 23344444444444333 2345555666666666666
Q ss_pred CCCcHHHhhhhhcccccccccccc
Q psy3785 157 SYVPWKLFSKFHQNRSSRFGCALI 180 (184)
Q Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~ 180 (184)
++++...+..++.++.+.++.+.+
T Consensus 230 ~~~~~~~~~~l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 230 RMIENGSLSFLPTLRELHLDNNKL 253 (332)
T ss_dssp CCCCTTGGGGCTTCCEEECCSSCC
T ss_pred CcCChhHhhCCCCCCEEECCCCcC
Confidence 665554555555666555555443
No 69
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=128.96 Aligned_cols=164 Identities=16% Similarity=0.200 Sum_probs=136.4
Q ss_pred ccccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCccccchh
Q psy3785 14 ARLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINE 92 (184)
Q Consensus 14 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~ 92 (184)
..+..+|..+ .+.++.|++++|.+.. ..+..+..+++|+.|++++|.++++ |..+..+++|++|++++|.++.+|.
T Consensus 41 ~~l~~iP~~~--~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 117 (353)
T 2z80_A 41 GSLNSIPSGL--TEAVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS 117 (353)
T ss_dssp TTCSSCCTTC--CTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH
T ss_pred CCcccccccc--cccCcEEECCCCcCcc-cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH
Confidence 3455566544 3589999999999874 3445788999999999999999996 5568999999999999999998876
Q ss_pred h-hcCCCCceEEEccccccccchh--hhcCCCCCCEEEccCC-CCCCcc-hhhhcCCCCCEEeccCCCCCCCcHHHhhhh
Q psy3785 93 A-VYDLPHLYKFNVSNNMIAKISD--NIGNLTSLLVLNISNN-KIESLP-ENIGYMKSLTHIDASHNTISYVPWKLFSKF 167 (184)
Q Consensus 93 ~-~~~l~~l~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n-~l~~l~-~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~ 167 (184)
. +..+++|++|++++|.++.+|. .+..++.|+.+++++| .++.++ ..+..+++|+.+++++|.+++++...+..+
T Consensus 118 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 197 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197 (353)
T ss_dssp HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc
Confidence 5 7789999999999999998876 6889999999999999 577664 567889999999999999999655566777
Q ss_pred hcccccccccccc
Q psy3785 168 HQNRSSRFGCALI 180 (184)
Q Consensus 168 ~~l~~~~~~~~~~ 180 (184)
+.++.+.++.+.+
T Consensus 198 ~~L~~L~l~~n~l 210 (353)
T 2z80_A 198 QNVSHLILHMKQH 210 (353)
T ss_dssp SEEEEEEEECSCS
T ss_pred ccCCeecCCCCcc
Confidence 8888888776654
No 70
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.72 E-value=1.1e-16 Score=131.21 Aligned_cols=153 Identities=18% Similarity=0.272 Sum_probs=125.7
Q ss_pred CcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCc---hhhhCCCCCCEEEcccCcccc-chhh-hcCCC
Q psy3785 24 SASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLP---DEIRHLTNLNELALNNNQLEM-INEA-VYDLP 98 (184)
Q Consensus 24 ~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp---~~~~~l~~L~~L~l~~n~l~~-~~~~-~~~l~ 98 (184)
..+++|+.|++++|.+.+ .+|..+..+++|++|++++|.+++++ ..+..+++|+.|++++|.++. +|.. +..++
T Consensus 350 ~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTD-SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCT-TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCcccc-chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 578899999999999886 67888899999999999999999764 457889999999999999986 7754 55788
Q ss_pred CceEEEcccccccc-chhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccc
Q psy3785 99 HLYKFNVSNNMIAK-ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGC 177 (184)
Q Consensus 99 ~l~~L~l~~n~~~~-~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~ 177 (184)
+|+.|++++|.++. +|..+. +.|+.+++++|.++.+|..++.++.|+.+++++|.++.+|...+..++.++.+.++.
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCS
T ss_pred cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecC
Confidence 89999999998863 333332 688999999999998888877889999999999999998887677777887777665
Q ss_pred cc
Q psy3785 178 AL 179 (184)
Q Consensus 178 ~~ 179 (184)
|.
T Consensus 507 N~ 508 (562)
T 3a79_B 507 NP 508 (562)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 71
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.72 E-value=1.8e-17 Score=135.09 Aligned_cols=158 Identities=17% Similarity=0.177 Sum_probs=79.2
Q ss_pred CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hhCCCCCCEEEcccCccccc--hhhhcCCC
Q psy3785 22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMI--NEAVYDLP 98 (184)
Q Consensus 22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~--~~~~~~l~ 98 (184)
.++.+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++++.. +..+++|++|++++|.++.+ |..+..++
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred hhhcCCcccEEECCCCCcCc-cChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence 34455555555555555443 2334455555555555555555554332 55555555555555555422 33344455
Q ss_pred CceEEEccccc-cccch-hhhcCCCCCCEEEccCCCCCC-cchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccc
Q psy3785 99 HLYKFNVSNNM-IAKIS-DNIGNLTSLLVLNISNNKIES-LPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRF 175 (184)
Q Consensus 99 ~l~~L~l~~n~-~~~~~-~~~~~~~~L~~l~l~~n~l~~-l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~ 175 (184)
+|++|++++|. ++.++ ..+.+++.|+.+++++|.++. .|..++.++.|+.++++.|.+..+|...+..++.++.+.+
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 203 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEE
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEc
Confidence 55555555554 33443 244555555555555555552 3444444455555555555554444444445566666665
Q ss_pred ccccc
Q psy3785 176 GCALI 180 (184)
Q Consensus 176 ~~~~~ 180 (184)
+.+.+
T Consensus 204 ~~n~l 208 (549)
T 2z81_A 204 RDTNL 208 (549)
T ss_dssp ESCBC
T ss_pred cCCcc
Confidence 55443
No 72
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=9.8e-17 Score=132.50 Aligned_cols=106 Identities=22% Similarity=0.284 Sum_probs=87.7
Q ss_pred hhCCCCCCEEEcccCccccc-hhhhcCCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEE
Q psy3785 71 IRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHI 149 (184)
Q Consensus 71 ~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l 149 (184)
+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.++.+|..+..++.|+.|++++|.++.+|..+..+++|+.+
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL 329 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEE
T ss_pred hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEE
Confidence 44566777777788877755 56788899999999999999998888888999999999999999999888899999999
Q ss_pred eccCCCCCCCcHHHhhhhhccccccccccc
Q psy3785 150 DASHNTISYVPWKLFSKFHQNRSSRFGCAL 179 (184)
Q Consensus 150 ~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~ 179 (184)
++++|.++.++. ..++.|+.+.++.|.
T Consensus 330 ~L~~N~l~~~~~---~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 330 YLDHNSIVTLKL---STHHTLKNLTLSHND 356 (597)
T ss_dssp ECCSSCCCCCCC---CTTCCCSEEECCSSC
T ss_pred ECCCCCCCCcCh---hhcCCCCEEEeeCCC
Confidence 999999999863 455666666665443
No 73
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.72 E-value=8.1e-17 Score=131.67 Aligned_cols=153 Identities=23% Similarity=0.305 Sum_probs=126.6
Q ss_pred cccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCc-hhhhCCCCCCEEEcccCccccch-h
Q psy3785 15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEMIN-E 92 (184)
Q Consensus 15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~-~ 92 (184)
.+..+|..+ .+.++.|++++|.+.. ..+..+..+++|+.|++++|.+++++ ..+.++++|++|++++|.++.++ .
T Consensus 18 ~l~~ip~~l--~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (570)
T 2z63_A 18 NFYKIPDNL--PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (570)
T ss_dssp CCSSCCSSS--CSSCCEEECCSCCCCE-ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CccccCCCc--cccccEEEccCCccCc-cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh
Confidence 355566544 4579999999999875 44667888999999999999999874 56888999999999999998775 6
Q ss_pred hhcCCCCceEEEccccccccchh-hhcCCCCCCEEEccCCCCCC--cchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhc
Q psy3785 93 AVYDLPHLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIES--LPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169 (184)
Q Consensus 93 ~~~~l~~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~--l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~ 169 (184)
.+..+++|++|++++|.++.++. .+++++.|+.+++++|.++. +|..++.+++|+.+++++|.+++++...+..+..
T Consensus 95 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 174 (570)
T 2z63_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (570)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHT
T ss_pred hhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhc
Confidence 67789999999999999988764 68899999999999999885 6888899999999999999999876655555655
Q ss_pred c
Q psy3785 170 N 170 (184)
Q Consensus 170 l 170 (184)
+
T Consensus 175 L 175 (570)
T 2z63_A 175 M 175 (570)
T ss_dssp C
T ss_pred c
Confidence 5
No 74
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.71 E-value=1.8e-17 Score=126.44 Aligned_cols=159 Identities=14% Similarity=0.130 Sum_probs=115.9
Q ss_pred cccCC--CcCccccEEEeecCCCCCCCCc----ccccCCCCccEEEecCCccccCc-hhhhCCCCCCEEEcccCcccc--
Q psy3785 19 LVGSA--SASALLYTYEISSDTGSGESNM----SQSEPVLKLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEM-- 89 (184)
Q Consensus 19 ~~~~~--~~~~~l~~l~l~~~~~~~~~~~----~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~-- 89 (184)
.+..+ ..+++|+.|++++|.+.+ ..+ ..+..+++|++|++++|.+.+++ ..+..+++|++|++++|++..
T Consensus 107 ~~~~~~~~~~~~L~~L~Ls~n~i~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 185 (310)
T 4glp_A 107 MPPLPLEATGLALSSLRLRNVSWAT-GRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGER 185 (310)
T ss_dssp CCCCSSSCCCBCCSSCEEESCCCSS-TTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHH
T ss_pred hhhhhhhccCCCCCEEEeecccccc-hhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccch
Confidence 34444 677888888888888775 222 23346788888888888888764 567788888888888888653
Q ss_pred -chhh--hcCCCCceEEEccccccccchh----hhcCCCCCCEEEccCCCCCCc-chhhhcC---CCCCEEeccCCCCCC
Q psy3785 90 -INEA--VYDLPHLYKFNVSNNMIAKISD----NIGNLTSLLVLNISNNKIESL-PENIGYM---KSLTHIDASHNTISY 158 (184)
Q Consensus 90 -~~~~--~~~l~~l~~L~l~~n~~~~~~~----~~~~~~~L~~l~l~~n~l~~l-~~~~~~~---~~L~~l~L~~n~l~~ 158 (184)
++.. +..+++|++|++++|.++.++. .++.++.|+.+++++|.++.. |..+..+ ++|+.+++++|.++.
T Consensus 186 ~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~ 265 (310)
T 4glp_A 186 GLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ 265 (310)
T ss_dssp HHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS
T ss_pred hhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc
Confidence 3322 2467888888888888876544 246778889999999988865 6655555 688899999999988
Q ss_pred CcHHHhhhhhccccccccccccc
Q psy3785 159 VPWKLFSKFHQNRSSRFGCALIM 181 (184)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~ 181 (184)
+|..++ +.|+.+.++.|.+.
T Consensus 266 lp~~~~---~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 266 VPKGLP---AKLRVLDLSSNRLN 285 (310)
T ss_dssp CCSCCC---SCCSCEECCSCCCC
T ss_pred hhhhhc---CCCCEEECCCCcCC
Confidence 877554 67777777777654
No 75
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=1.1e-17 Score=140.97 Aligned_cols=120 Identities=18% Similarity=0.239 Sum_probs=105.5
Q ss_pred CcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchhhhcCCCCC
Q psy3785 44 NMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSL 123 (184)
Q Consensus 44 ~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L 123 (184)
.+..+..++.|+.|++++|.+..+|..+..+++|++|+|++|.++.+|..+..+++|++|++++|.++.+|..++.++.|
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL 295 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCC
Confidence 46678888999999999999999998888999999999999999999988889999999999999999999889999999
Q ss_pred CEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCC-CcHHH
Q psy3785 124 LVLNISNNKIESLPENIGYMKSLTHIDASHNTISY-VPWKL 163 (184)
Q Consensus 124 ~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~-~~~~~ 163 (184)
+.|++++|.++.+|..++.+++|+.|+|++|.|++ +|..+
T Consensus 296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 99999999999999889999999999999999998 44444
No 76
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.71 E-value=3.7e-16 Score=120.61 Aligned_cols=148 Identities=27% Similarity=0.337 Sum_probs=88.6
Q ss_pred cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEE
Q psy3785 25 ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFN 104 (184)
Q Consensus 25 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~ 104 (184)
.++.|+.+++++|.+.. ++. +..+++|++|++++|.+++++. +..+++|++|++++|.++.++ .+..+++|+.|+
T Consensus 197 ~l~~L~~L~l~~n~l~~--~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~ 271 (347)
T 4fmz_A 197 SLTSLHYFTAYVNQITD--ITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLN 271 (347)
T ss_dssp GCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEE
T ss_pred CCCccceeecccCCCCC--Cch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEE
Confidence 34444444444444332 111 4555666666666666666544 566666666666666666553 345566677777
Q ss_pred ccccccccchhhhcCCCCCCEEEccCCCCCCc-chhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccccc
Q psy3785 105 VSNNMIAKISDNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALI 180 (184)
Q Consensus 105 l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~ 180 (184)
+++|.++.++ .+..++.|+.+++++|.++.. +..+..+++|+.+++++|.+++++. +..++.++.+.++.+.+
T Consensus 272 l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 272 VGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp CCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred ccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 7777666553 356667777777777776644 3446667777777777777777544 45566666666665554
No 77
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.70 E-value=1.4e-16 Score=131.39 Aligned_cols=161 Identities=19% Similarity=0.178 Sum_probs=118.5
Q ss_pred cccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCccccc-hh
Q psy3785 15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMI-NE 92 (184)
Q Consensus 15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~-~~ 92 (184)
.+..+|..+. +.++.|++++|.+.. ..|..+..+++|++|++++|.+.++ |..|.++++|++|++++|.++.+ |.
T Consensus 23 ~l~~iP~~l~--~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 99 (606)
T 3t6q_A 23 GLNEIPGTLP--NSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET 99 (606)
T ss_dssp CCSSCCTTSC--TTCCEEECTTCCCSE-ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT
T ss_pred CcccCcCCCC--CcCcEEEccCCccCc-CChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh
Confidence 3455665553 367888888888775 4467788888888888888888875 66688888888888888888755 56
Q ss_pred hhcCCCCceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCcc-hhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcc
Q psy3785 93 AVYDLPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESLP-ENIGYMKSLTHIDASHNTISYVPWKLFSKFHQN 170 (184)
Q Consensus 93 ~~~~l~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l~-~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l 170 (184)
.+..+++|++|++++|.++.+ +..++.++.|+.+++++|.++.++ ..+..+++|+.+++++|.+++++...+..+..+
T Consensus 100 ~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 179 (606)
T 3t6q_A 100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179 (606)
T ss_dssp TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTC
T ss_pred hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhccc
Confidence 677788888888888888876 456778888888888888888652 233447888888888888888766666666666
Q ss_pred c--ccccccc
Q psy3785 171 R--SSRFGCA 178 (184)
Q Consensus 171 ~--~~~~~~~ 178 (184)
+ .+.++.+
T Consensus 180 ~~l~L~l~~n 189 (606)
T 3t6q_A 180 TNLSLNLNGN 189 (606)
T ss_dssp CSEEEECTTC
T ss_pred ceeEEecCCC
Confidence 6 4444433
No 78
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.70 E-value=2e-16 Score=132.11 Aligned_cols=162 Identities=16% Similarity=0.211 Sum_probs=123.1
Q ss_pred cccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCccccchh-
Q psy3785 15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINE- 92 (184)
Q Consensus 15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~- 92 (184)
.+..+|..+. ++++.|++++|.+.. ..+..+..+++|+.|++++|.++++ |..+.++++|++|++++|.++.+|.
T Consensus 15 ~L~~ip~~~~--~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 91 (680)
T 1ziw_A 15 KLTQVPDDLP--TNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK 91 (680)
T ss_dssp CCSSCCSCSC--TTCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT
T ss_pred CccccccccC--CCCcEEECCCCCCCC-cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChh
Confidence 3455665553 688888998888775 4455688888888899888888886 5667888888888888888888875
Q ss_pred hhcCCCCceEEEccccccccch-hhhcCCCCCCEEEccCCCCCCc-chhhhcCCCCCEEeccCCCCCCCcHHHhhh--hh
Q psy3785 93 AVYDLPHLYKFNVSNNMIAKIS-DNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISYVPWKLFSK--FH 168 (184)
Q Consensus 93 ~~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~--~~ 168 (184)
.+..+++|++|++++|.++.++ ..++++++|+.+++++|.++.. +..+..+++|+.+++++|.+++++...+.. ..
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 171 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS 171 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTC
T ss_pred hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccc
Confidence 4777888888888888888775 5688888888888888888855 445677888888888888888866655443 35
Q ss_pred ccccccccccc
Q psy3785 169 QNRSSRFGCAL 179 (184)
Q Consensus 169 ~l~~~~~~~~~ 179 (184)
.++.+.++.+.
T Consensus 172 ~L~~L~L~~n~ 182 (680)
T 1ziw_A 172 SLKKLELSSNQ 182 (680)
T ss_dssp EESEEECTTCC
T ss_pred cccEEECCCCc
Confidence 66666665553
No 79
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.70 E-value=5.4e-16 Score=119.70 Aligned_cols=151 Identities=17% Similarity=0.281 Sum_probs=104.5
Q ss_pred CcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEE
Q psy3785 24 SASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKF 103 (184)
Q Consensus 24 ~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L 103 (184)
..+++|+.+++++|.+.. ++. +..+++|+.+++.+|.+.+++. +..+++|++|++++|.++.++. +..+++|++|
T Consensus 174 ~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 248 (347)
T 4fmz_A 174 ANLTDLYSLSLNYNQIED--ISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWL 248 (347)
T ss_dssp GGCTTCSEEECTTSCCCC--CGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred ccCCCCCEEEccCCcccc--ccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEE
Confidence 344455555555554442 222 4445555555555555555433 5667778888888887776655 6677888888
Q ss_pred EccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccccccc
Q psy3785 104 NVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALIM 181 (184)
Q Consensus 104 ~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (184)
++++|.++.+ +.+..++.|+.+++++|.++.++ .+..+++|+.+++++|.+++.+...+..++.++.+.++++.+.
T Consensus 249 ~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 249 EIGTNQISDI-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp ECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred ECCCCccCCC-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 8888887766 34777888888888888888774 4677888888888888888877677777888888887776553
No 80
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.70 E-value=4.9e-16 Score=111.94 Aligned_cols=147 Identities=24% Similarity=0.334 Sum_probs=122.6
Q ss_pred cEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hhCCCCCCEEEcccCccccchhh-hcCCCCceEEEccc
Q psy3785 30 YTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINEA-VYDLPHLYKFNVSN 107 (184)
Q Consensus 30 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~l~~L~l~~ 107 (184)
+.++.+++... .+|..+ .+++++|++++|.+++++.. +..+++|++|++++|.++.++.. +..+++|++|++++
T Consensus 10 ~~v~c~~~~l~--~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT--SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS--SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc--CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 35555555544 455543 46899999999999998654 78899999999999999988754 56899999999999
Q ss_pred cccccchh-hhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccccc
Q psy3785 108 NMIAKISD-NIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALI 180 (184)
Q Consensus 108 n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~ 180 (184)
|.++.++. .+..++.|+.+++++|.++.++.. +..+++|+.+++++|.+++++...+..++.++.+.++.|.+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 99998865 478999999999999999988765 68899999999999999999888888888888888876643
No 81
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.70 E-value=9.5e-17 Score=109.82 Aligned_cols=124 Identities=22% Similarity=0.206 Sum_probs=110.1
Q ss_pred CCCccEEEecCCccc--cCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEcccccccc-chhhhcCCCCCCEEE
Q psy3785 51 VLKLKVLNLQYNNLK--GLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK-ISDNIGNLTSLLVLN 127 (184)
Q Consensus 51 l~~L~~L~l~~n~l~--~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~-~~~~~~~~~~L~~l~ 127 (184)
.++++.|++++|.++ .+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++. +|..+..++.|+.++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 478999999999999 5888889999999999999999987 667789999999999999997 777788899999999
Q ss_pred ccCCCCCCcc--hhhhcCCCCCEEeccCCCCCCCcH---HHhhhhhccccccc
Q psy3785 128 ISNNKIESLP--ENIGYMKSLTHIDASHNTISYVPW---KLFSKFHQNRSSRF 175 (184)
Q Consensus 128 l~~n~l~~l~--~~~~~~~~L~~l~L~~n~l~~~~~---~~~~~~~~l~~~~~ 175 (184)
+++|.++.++ ..+..+++|+.+++++|.+++++. ..+..++.|+.+.+
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 9999999875 678999999999999999999776 57777778876654
No 82
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=1.1e-16 Score=111.60 Aligned_cols=130 Identities=21% Similarity=0.179 Sum_probs=114.7
Q ss_pred CCCCccEEEecCCccc--cCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEcccccccc-chhhhcCCCCCCEE
Q psy3785 50 PVLKLKVLNLQYNNLK--GLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK-ISDNIGNLTSLLVL 126 (184)
Q Consensus 50 ~l~~L~~L~l~~n~l~--~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~-~~~~~~~~~~L~~l 126 (184)
..++++.|++++|.++ .+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++. +|..+..++.|+.+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 3478999999999999 6888888999999999999999987 667789999999999999997 67777789999999
Q ss_pred EccCCCCCCcc--hhhhcCCCCCEEeccCCCCCCCcH---HHhhhhhcccccccccccc
Q psy3785 127 NISNNKIESLP--ENIGYMKSLTHIDASHNTISYVPW---KLFSKFHQNRSSRFGCALI 180 (184)
Q Consensus 127 ~l~~n~l~~l~--~~~~~~~~L~~l~L~~n~l~~~~~---~~~~~~~~l~~~~~~~~~~ 180 (184)
++++|.++.++ ..+..+++|+.+++++|.++.+|. ..+..++.++.+.+..+.+
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 99999999876 678899999999999999999876 5778888888888776544
No 83
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=1.8e-16 Score=118.45 Aligned_cols=139 Identities=25% Similarity=0.294 Sum_probs=119.8
Q ss_pred ccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhc
Q psy3785 16 LVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVY 95 (184)
Q Consensus 16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~ 95 (184)
+..++ .+..+++|+.|++++|.+.+ +++ +..+++|+.|++++|.++++|.... ++|+.|++++|.++.++ .+.
T Consensus 53 i~~l~-~l~~l~~L~~L~L~~N~i~~--~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~ 125 (263)
T 1xeu_A 53 IQSLA-GMQFFTNLKELHLSHNQISD--LSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLI 125 (263)
T ss_dssp CCCCT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGT
T ss_pred cccch-HHhhCCCCCEEECCCCccCC--Chh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCCh-hhc
Confidence 34444 67789999999999999874 444 8899999999999999999865433 89999999999999875 477
Q ss_pred CCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHH
Q psy3785 96 DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKL 163 (184)
Q Consensus 96 ~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~ 163 (184)
.+++|+.|++++|.++.++ .+..++.|+.+++++|.++.+ ..+..+++|+.+++++|.++..|...
T Consensus 126 ~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~~~~ 191 (263)
T 1xeu_A 126 HLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPVKY 191 (263)
T ss_dssp TCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCCEEC
T ss_pred CcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCcccc
Confidence 8999999999999999886 688999999999999999987 56788999999999999998876543
No 84
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=5.2e-17 Score=124.33 Aligned_cols=146 Identities=15% Similarity=0.185 Sum_probs=111.4
Q ss_pred cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhh-hCCCCCCEEEcccCccccchhhhcCCCCceE
Q psy3785 25 ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYK 102 (184)
Q Consensus 25 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~-~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~ 102 (184)
.++.|+.|++++|.+.. ..+..+..+++|++|++++|.++++ +..+ ..+++|++|++++|.++.++.. ..+++|+.
T Consensus 118 ~~~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~ 195 (317)
T 3o53_A 118 RGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKT 195 (317)
T ss_dssp CCSSCEEEECCSSCCCS-GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCE
T ss_pred ccCCCCEEECCCCCCCC-ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCE
Confidence 35678888888888775 4455777788899999999888875 4444 4678899999999988877543 34788899
Q ss_pred EEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCC-CCcHHHhhhhhcccc
Q psy3785 103 FNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS-YVPWKLFSKFHQNRS 172 (184)
Q Consensus 103 L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~-~~~~~~~~~~~~l~~ 172 (184)
|++++|.++.+|+.+..++.|+.+++++|.++.+|..+..+++|+.+++++|++. +.....+..++.++.
T Consensus 196 L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~ 266 (317)
T 3o53_A 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266 (317)
T ss_dssp EECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHH
T ss_pred EECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceE
Confidence 9999998888877788888899999999988888887888888999999999888 333333344444443
No 85
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.69 E-value=1.5e-16 Score=122.33 Aligned_cols=157 Identities=19% Similarity=0.255 Sum_probs=121.3
Q ss_pred ccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCch-hhhCCCCCCEEEcccCcccc--c-hhhhc
Q psy3785 20 VGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPD-EIRHLTNLNELALNNNQLEM--I-NEAVY 95 (184)
Q Consensus 20 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~--~-~~~~~ 95 (184)
+..+..+++|+.|++++|.+. .+|..+. ++|++|++++|.++.+|. .+..+++|++|++++|.++. . +..+.
T Consensus 95 ~~~~~~l~~L~~L~L~~n~l~--~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 170 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKNHLV--EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170 (332)
T ss_dssp GGGSTTCTTCCEEECCSSCCC--SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC
T ss_pred HhHhhCcCCCCEEECCCCcCC--ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccccc
Confidence 566788899999999998876 4555544 788888888888888754 47778888888888887752 1 22222
Q ss_pred CC--------------------CCceEEEccccccccch-hhhcCCCCCCEEEccCCCCCCcch-hhhcCCCCCEEeccC
Q psy3785 96 DL--------------------PHLYKFNVSNNMIAKIS-DNIGNLTSLLVLNISNNKIESLPE-NIGYMKSLTHIDASH 153 (184)
Q Consensus 96 ~l--------------------~~l~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~L~~ 153 (184)
.+ ++++.|++++|.++.++ ..+..++.|+.+++++|.++.++. .+..+++|+.+++++
T Consensus 171 ~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 250 (332)
T 2ft3_A 171 GLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250 (332)
T ss_dssp SCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred CCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC
Confidence 22 46777777777777664 568899999999999999997764 688899999999999
Q ss_pred CCCCCCcHHHhhhhhccccccccccccc
Q psy3785 154 NTISYVPWKLFSKFHQNRSSRFGCALIM 181 (184)
Q Consensus 154 n~l~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (184)
|.++.+|.. +..++.|+.+.++.|.+.
T Consensus 251 N~l~~lp~~-l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 251 NKLSRVPAG-LPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp SCCCBCCTT-GGGCTTCCEEECCSSCCC
T ss_pred CcCeecChh-hhcCccCCEEECCCCCCC
Confidence 999999886 466788888888776653
No 86
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.69 E-value=5.3e-17 Score=114.23 Aligned_cols=134 Identities=19% Similarity=0.237 Sum_probs=111.8
Q ss_pred cCCCcCccccEEEeecCCCCCCCCcccccCC-CCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhh-cCCC
Q psy3785 21 GSASASALLYTYEISSDTGSGESNMSQSEPV-LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAV-YDLP 98 (184)
Q Consensus 21 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~-~~l~ 98 (184)
..+.....|+.|++++|.+. .++. +..+ ++|+.|++++|.++++ ..+..+++|++|++++|.++.+|..+ ..++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~--~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIP--VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCCC--SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCCc--hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 34556788999999999887 3444 4444 4899999999999987 56788899999999999999887544 6789
Q ss_pred CceEEEccccccccchh--hhcCCCCCCEEEccCCCCCCcchh----hhcCCCCCEEeccCCCCCC
Q psy3785 99 HLYKFNVSNNMIAKISD--NIGNLTSLLVLNISNNKIESLPEN----IGYMKSLTHIDASHNTISY 158 (184)
Q Consensus 99 ~l~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~l~~l~~~----~~~~~~L~~l~L~~n~l~~ 158 (184)
+|++|++++|.++.+|. .+..++.|+.+++++|.++.+|.. +..++.|+.++++.|.+..
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99999999999988876 788899999999999999888764 7889999999999988755
No 87
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.68 E-value=3.4e-16 Score=128.44 Aligned_cols=137 Identities=25% Similarity=0.280 Sum_probs=72.4
Q ss_pred CccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEc
Q psy3785 26 SALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNV 105 (184)
Q Consensus 26 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l 105 (184)
+++|+.|++++|.+.+ +|. +.. +|+.|++++|.++++|. .+++|+.|++++|.++.+|. .+++|+.|++
T Consensus 99 l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 167 (571)
T 3cvr_A 99 PASLEYLDACDNRLST--LPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSV 167 (571)
T ss_dssp CTTCCEEECCSSCCSC--CCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEEC
T ss_pred cCCCCEEEccCCCCCC--cch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEEC
Confidence 3444555555544442 333 222 45555555555555444 34455555555555555444 3445666666
Q ss_pred cccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCC-------CEEeccCCCCCCCcHHHhhhhhcccccccccc
Q psy3785 106 SNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSL-------THIDASHNTISYVPWKLFSKFHQNRSSRFGCA 178 (184)
Q Consensus 106 ~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L-------~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~ 178 (184)
++|.++.+|. +. +.|+.|++++|.++.+|. +.. +| +.+++++|.|+.+|..++. ++.++.+.++.|
T Consensus 168 s~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~-l~~L~~L~L~~N 240 (571)
T 3cvr_A 168 RNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILS-LDPTCTIILEDN 240 (571)
T ss_dssp CSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGG-SCTTEEEECCSS
T ss_pred CCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhc-CCCCCEEEeeCC
Confidence 6666555554 33 556666666666665555 322 44 6666666666666665555 566666666555
Q ss_pred cc
Q psy3785 179 LI 180 (184)
Q Consensus 179 ~~ 180 (184)
.+
T Consensus 241 ~l 242 (571)
T 3cvr_A 241 PL 242 (571)
T ss_dssp SC
T ss_pred cC
Confidence 44
No 88
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.68 E-value=2.1e-16 Score=111.20 Aligned_cols=131 Identities=20% Similarity=0.247 Sum_probs=112.9
Q ss_pred cccCCCCccEEEecCCccccCchhhhCCC-CCCEEEcccCccccchhhhcCCCCceEEEccccccccchhh-hcCCCCCC
Q psy3785 47 QSEPVLKLKVLNLQYNNLKGLPDEIRHLT-NLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDN-IGNLTSLL 124 (184)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~~lp~~~~~l~-~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~-~~~~~~L~ 124 (184)
.+.++++|++|++++|.++.+|. +..+. +|+.|++++|.++.+ ..+..+++|++|++++|.++.+|+. +..++.|+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 45668899999999999999865 45554 999999999999987 5677899999999999999988754 48999999
Q ss_pred EEEccCCCCCCcch--hhhcCCCCCEEeccCCCCCCCcHH---Hhhhhhccccccccccc
Q psy3785 125 VLNISNNKIESLPE--NIGYMKSLTHIDASHNTISYVPWK---LFSKFHQNRSSRFGCAL 179 (184)
Q Consensus 125 ~l~l~~n~l~~l~~--~~~~~~~L~~l~L~~n~l~~~~~~---~~~~~~~l~~~~~~~~~ 179 (184)
.+++++|.++.+|. .+..+++|+.+++++|+++.+|.. ++..++.++.+....+.
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999999998887 688999999999999999998875 67778888887776554
No 89
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=8.1e-16 Score=109.85 Aligned_cols=125 Identities=20% Similarity=0.294 Sum_probs=105.9
Q ss_pred cEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccch-hhhcCCCCceEEEcccc
Q psy3785 30 YTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNN 108 (184)
Q Consensus 30 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l~~L~l~~n 108 (184)
+.++.+++.+. .+|..+ .+++++|++++|.++.+|..+..+++|+.|++++|.++.++ ..+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~--~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK--VLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS--SCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC--cCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46777777765 566654 36899999999999999988999999999999999999876 45778999999999999
Q ss_pred ccccch-hhhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCC
Q psy3785 109 MIAKIS-DNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISY 158 (184)
Q Consensus 109 ~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~ 158 (184)
.++.++ ..+..++.|+.+++++|.++.++.. +..+++|+.+++++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 999875 4688999999999999999988764 7778999999999999876
No 90
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=6e-16 Score=110.37 Aligned_cols=125 Identities=24% Similarity=0.291 Sum_probs=102.4
Q ss_pred cEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh--hhCCCCCCEEEcccCccccc-hhhhcCCCCceEEEcc
Q psy3785 30 YTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE--IRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVS 106 (184)
Q Consensus 30 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~--~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~l~~L~l~ 106 (184)
+.++++++.+. .+|..+.. ++++|++++|.+++++.. +..+++|++|++++|.++.+ |..+..+++|++|+++
T Consensus 11 ~~l~~s~~~l~--~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK--EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS--SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC--cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 67888888775 56665443 889999999999887643 78889999999999998876 5677788999999999
Q ss_pred ccccccch-hhhcCCCCCCEEEccCCCCCCc-chhhhcCCCCCEEeccCCCCCC
Q psy3785 107 NNMIAKIS-DNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISY 158 (184)
Q Consensus 107 ~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~~n~l~~ 158 (184)
+|.++.++ ..+.+++.|+.+++++|.++.+ |..+..+++|+.+++++|++++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 99988775 4578889999999999999865 5667888899999999999887
No 91
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.67 E-value=6.4e-16 Score=123.27 Aligned_cols=134 Identities=23% Similarity=0.269 Sum_probs=120.6
Q ss_pred CccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCccccc-hhhhcCCCCceEE
Q psy3785 26 SALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKF 103 (184)
Q Consensus 26 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~l~~L 103 (184)
.+.|+.+++++|.+.+ ..|..+..+++|++|++++|.++++ |..+..+++|++|++++|.++.+ |..+..+++|++|
T Consensus 274 ~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFA-LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL 352 (455)
T ss_dssp TSCCCEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred ccCceEEEecCccccc-cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEE
Confidence 3689999999999886 6688899999999999999999986 66789999999999999999977 5667789999999
Q ss_pred Eccccccccc-hhhhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCC-Cc
Q psy3785 104 NVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISY-VP 160 (184)
Q Consensus 104 ~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~-~~ 160 (184)
++++|.++.+ |..+.+++.|+.+++++|.++.+|.. +..+++|+.+++++|++++ +|
T Consensus 353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999999977 67899999999999999999988764 5789999999999999999 66
No 92
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.67 E-value=8.5e-17 Score=131.55 Aligned_cols=151 Identities=21% Similarity=0.270 Sum_probs=79.3
Q ss_pred cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCc--hhhhCCCCCCEEEcccCcccc-chhhhcCCCCce
Q psy3785 25 ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLP--DEIRHLTNLNELALNNNQLEM-INEAVYDLPHLY 101 (184)
Q Consensus 25 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp--~~~~~l~~L~~L~l~~n~l~~-~~~~~~~l~~l~ 101 (184)
.+++|+.+++++|.+. .++..+..+++|++|++++|.+.+.+ ..+..+++|++|++++|.++. .|..+..+++|+
T Consensus 371 ~~~~L~~L~l~~n~l~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 448 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448 (570)
T ss_dssp TCSCCCEEECCSCSEE--EEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred ccCccCEEECCCCccc--cccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCc
Confidence 3444444444444433 12223445555555555555555432 234555555555555555553 234444555666
Q ss_pred EEEccccccc--cchhhhcCCCCCCEEEccCCCCCCc-chhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccc
Q psy3785 102 KFNVSNNMIA--KISDNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGC 177 (184)
Q Consensus 102 ~L~l~~n~~~--~~~~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~ 177 (184)
.|++++|.++ .+|..+..++.|+.+++++|.++.+ |..+..+++|+.+++++|.+++++...+..++.++.+.++.
T Consensus 449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecC
Confidence 6666666554 3455555566666666666666544 44455556666666666666665555555555555554443
No 93
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.67 E-value=2.8e-16 Score=127.46 Aligned_cols=138 Identities=18% Similarity=0.223 Sum_probs=121.5
Q ss_pred cccCCCcCccccEEEeecCCCCCC-CCcccccCCCCccEEEecCCcccc-Cchh-hhCCCCCCEEEcccCccc-cchhhh
Q psy3785 19 LVGSASASALLYTYEISSDTGSGE-SNMSQSEPVLKLKVLNLQYNNLKG-LPDE-IRHLTNLNELALNNNQLE-MINEAV 94 (184)
Q Consensus 19 ~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~-lp~~-~~~l~~L~~L~l~~n~l~-~~~~~~ 94 (184)
++..+..+++|+.|++++|.+.+- .+|..+..+++|++|++++|.+++ +|.. +..+++|+.|++++|.++ .+|..+
T Consensus 340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 419 (520)
T 2z7x_B 340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419 (520)
T ss_dssp TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC
T ss_pred hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh
Confidence 567788999999999999998741 345678899999999999999998 8865 778899999999999987 444443
Q ss_pred cCCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCC
Q psy3785 95 YDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISY 158 (184)
Q Consensus 95 ~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~ 158 (184)
. ++|+.|++++|+++.+|..+..++.|+.+++++|.++.+|.. +..+++|+.+++++|++++
T Consensus 420 ~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 420 P--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp C--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred c--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 2 689999999999999998888999999999999999999876 7889999999999999998
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=6.2e-16 Score=127.87 Aligned_cols=150 Identities=19% Similarity=0.216 Sum_probs=131.9
Q ss_pred CCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceE
Q psy3785 23 ASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYK 102 (184)
Q Consensus 23 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~ 102 (184)
...++.|+.|++++|.+.. ++ .+..+++|+.|++++|.+++++. +..+++|+.|++++|.++.+| .+..+++|+.
T Consensus 39 ~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred hhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence 4578899999999999774 33 68889999999999999999876 889999999999999999876 5778999999
Q ss_pred EEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccccccc
Q psy3785 103 FNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALIM 181 (184)
Q Consensus 103 L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (184)
|++++|.++.++ .+..++.|+.|++++|.++.+ ..+..+++|+.|+|++|.+++++. +..++.|+.+.++++.+.
T Consensus 114 L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 114 LSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp EECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEecCCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 999999999874 588999999999999999988 568899999999999999999766 677889998888877653
No 95
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.66 E-value=1.1e-15 Score=118.93 Aligned_cols=148 Identities=26% Similarity=0.308 Sum_probs=124.1
Q ss_pred cEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hh-CCCCCCEEEcccCccccch-hhhcCCCCceEEEcc
Q psy3785 30 YTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IR-HLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVS 106 (184)
Q Consensus 30 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~-~l~~L~~L~l~~n~l~~~~-~~~~~l~~l~~L~l~ 106 (184)
+.++.+++... .+|..+. ..++.|++++|.+++++.. +. .+++|+.|++++|.++.++ ..+..+++|++|+++
T Consensus 21 ~~l~c~~~~l~--~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP--NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS--SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC--ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 57888888766 5666543 4589999999999997655 55 8999999999999999886 557789999999999
Q ss_pred ccccccchh-hhcCCCCCCEEEccCCCCCCc-chhhhcCCCCCEEeccCCCCCCCcHHHh---hhhhccccccccccccc
Q psy3785 107 NNMIAKISD-NIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISYVPWKLF---SKFHQNRSSRFGCALIM 181 (184)
Q Consensus 107 ~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~~n~l~~~~~~~~---~~~~~l~~~~~~~~~~~ 181 (184)
+|.++.++. .+..++.|+.|++++|.++.+ +..+..+++|+.|+|++|.|+.+|...+ ..++.|+.+.++.|.+.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999998854 688999999999999999977 4568889999999999999999998887 45788888888777653
No 96
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=2.1e-16 Score=127.66 Aligned_cols=130 Identities=15% Similarity=0.190 Sum_probs=83.2
Q ss_pred CccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhh-CCCCCCEEEcccCccccchhhhcCCCCceEE
Q psy3785 26 SALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIR-HLTNLNELALNNNQLEMINEAVYDLPHLYKF 103 (184)
Q Consensus 26 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~-~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L 103 (184)
++.|+.|++++|.+.+ ..|..+..+++|+.|++++|.++++ |..+. .+++|++|++++|.++.+|.. ..+++|+.|
T Consensus 119 l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~-~~l~~L~~L 196 (487)
T 3oja_A 119 GQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTL 196 (487)
T ss_dssp CSSCEEEECCSSCCCS-GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEE
T ss_pred cCCCCEEECCCCCCCC-CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc-ccCCCCCEE
Confidence 4455666666666554 3455556666677777777766663 44443 566677777777766655432 246667777
Q ss_pred EccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCC
Q psy3785 104 NVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157 (184)
Q Consensus 104 ~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~ 157 (184)
++++|.++.+|+.+..++.|+.+++++|.++.+|..+..++.|+.+++++|++.
T Consensus 197 ~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred ECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 777777766665566667777777777777766666666667777777777766
No 97
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.65 E-value=1.9e-15 Score=129.37 Aligned_cols=161 Identities=21% Similarity=0.224 Sum_probs=123.9
Q ss_pred cccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccc-cC-chhhhCCCCCCEEEcccCccccc-h
Q psy3785 15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLK-GL-PDEIRHLTNLNELALNNNQLEMI-N 91 (184)
Q Consensus 15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l-p~~~~~l~~L~~L~l~~n~l~~~-~ 91 (184)
.+..+|. -.+.++.|++++|.+.. ..+..+..+++|+.|++++|... .+ |..+.++++|++|++++|.++.+ |
T Consensus 15 ~L~~vP~---lp~~l~~LdLs~N~i~~-i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 15 NLTQVPQ---VLNTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CSSCCCS---SCTTCCEEEEESCCCCE-ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCC---CCCCcCEEECCCCcCCc-cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 4555665 45789999999998875 55788888999999999999544 46 67788899999999999998866 6
Q ss_pred hhhcCCCCceEEEcccccccc-chhh--hcCCCCCCEEEccCCCCCCc--chhhhcCCCCCEEeccCCCCCCCcHHHhhh
Q psy3785 92 EAVYDLPHLYKFNVSNNMIAK-ISDN--IGNLTSLLVLNISNNKIESL--PENIGYMKSLTHIDASHNTISYVPWKLFSK 166 (184)
Q Consensus 92 ~~~~~l~~l~~L~l~~n~~~~-~~~~--~~~~~~L~~l~l~~n~l~~l--~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~ 166 (184)
..+..+++|++|++++|.++. ++.. +++++.|+.|++++|.++.+ +..++.+++|+.+++++|.++++....+..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 778889999999999998874 4443 88899999999999998855 346888999999999999998843333333
Q ss_pred h--hccccccccccc
Q psy3785 167 F--HQNRSSRFGCAL 179 (184)
Q Consensus 167 ~--~~l~~~~~~~~~ 179 (184)
+ ..++.+.++.+.
T Consensus 171 l~~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 171 LQGKTLSFFSLAANS 185 (844)
T ss_dssp HHHCSSCCCEECCSB
T ss_pred ccCCccceEECCCCc
Confidence 3 556655555443
No 98
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.65 E-value=2.8e-15 Score=120.26 Aligned_cols=143 Identities=25% Similarity=0.326 Sum_probs=70.5
Q ss_pred cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEE
Q psy3785 25 ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFN 104 (184)
Q Consensus 25 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~ 104 (184)
.+++|+.|++++|.+.+ +++ +..+++|++|++++|.+++++. +..+++|+.|++++|.++.++. +..+++|+.|+
T Consensus 241 ~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~ 315 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISN--LAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLT 315 (466)
T ss_dssp GCTTCSEEECCSSCCCC--CGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEE
T ss_pred cCCCCCEEECCCCcccc--chh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEE
Confidence 34444444444444432 111 4444555555555555554433 4445555555555555554433 34455555555
Q ss_pred ccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccc
Q psy3785 105 VSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFG 176 (184)
Q Consensus 105 l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~ 176 (184)
+++|.++.+++ +..++.|+.+++++|.++.++ .+..+++|+.+++++|.+++.+. +..++.++.+.++
T Consensus 316 L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 316 LYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 383 (466)
T ss_dssp CCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECC
T ss_pred CcCCcCCCchh-hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEecc
Confidence 55555554433 445555555555555555442 34555566666666666655433 3444445444443
No 99
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=1.8e-16 Score=133.59 Aligned_cols=119 Identities=26% Similarity=0.269 Sum_probs=104.0
Q ss_pred ccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhc
Q psy3785 16 LVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVY 95 (184)
Q Consensus 16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~ 95 (184)
+...+..+..++.|+.|++++|.+. .+|..+..+++|+.|++++|.++.+|..+..+++|++|+|++|.++.+|..+.
T Consensus 213 ~~~~~~~~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 290 (727)
T 4b8c_D 213 MVMPKDSKYDDQLWHALDLSNLQIF--NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG 290 (727)
T ss_dssp ---------CCCCCCEEECTTSCCS--CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGG
T ss_pred eecChhhhccCCCCcEEECCCCCCC--CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhc
Confidence 3345666788999999999999987 67888889999999999999999999999999999999999999999999899
Q ss_pred CCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCc
Q psy3785 96 DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESL 136 (184)
Q Consensus 96 ~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l 136 (184)
.+.+|++|++++|.++.+|..++.++.|+.|++++|.++..
T Consensus 291 ~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp GGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred CCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence 99999999999999999998899999999999999999844
No 100
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.64 E-value=9.9e-17 Score=122.79 Aligned_cols=153 Identities=20% Similarity=0.239 Sum_probs=90.1
Q ss_pred CcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhh----------
Q psy3785 24 SASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEA---------- 93 (184)
Q Consensus 24 ~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~---------- 93 (184)
...++|+.|++++|.+.. ..|..+..+++|+.|++++|.+++++. +..+++|++|++++|.++.++..
T Consensus 31 ~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~ 108 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAAN 108 (317)
T ss_dssp TTGGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCS
T ss_pred ccCCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCC
Confidence 345677888888777765 445667777778888888887776543 66777777777777776654421
Q ss_pred -------hcCCCCceEEEccccccccch-hhhcCCCCCCEEEccCCCCCCcc-hhh-hcCCCCCEEeccCCCCCCCcHHH
Q psy3785 94 -------VYDLPHLYKFNVSNNMIAKIS-DNIGNLTSLLVLNISNNKIESLP-ENI-GYMKSLTHIDASHNTISYVPWKL 163 (184)
Q Consensus 94 -------~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~-~~~-~~~~~L~~l~L~~n~l~~~~~~~ 163 (184)
...+++|++|++++|.++.++ ..+..++.|+.+++++|.++.++ ..+ ..++.|+.+++++|.++.++...
T Consensus 109 n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 188 (317)
T 3o53_A 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV 188 (317)
T ss_dssp SCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC
T ss_pred CccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc
Confidence 012344555555555555443 24555566666666666666442 222 34566666666666666553322
Q ss_pred hhhhhcccccccccccc
Q psy3785 164 FSKFHQNRSSRFGCALI 180 (184)
Q Consensus 164 ~~~~~~l~~~~~~~~~~ 180 (184)
.++.++.+.++.+.+
T Consensus 189 --~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 189 --VFAKLKTLDLSSNKL 203 (317)
T ss_dssp --CCTTCCEEECCSSCC
T ss_pred --ccccCCEEECCCCcC
Confidence 245555555554443
No 101
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.64 E-value=5.2e-15 Score=118.75 Aligned_cols=149 Identities=23% Similarity=0.267 Sum_probs=72.1
Q ss_pred CCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceE
Q psy3785 23 ASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYK 102 (184)
Q Consensus 23 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~ 102 (184)
+..+++|+.|++++|.+.+ . ++ ++.+++|+.|++++|.+.+++ .+..+++|+.|++++|.++.++. +..+++|+.
T Consensus 195 l~~l~~L~~L~l~~n~l~~-~-~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 269 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISD-I-TP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTE 269 (466)
T ss_dssp GGGCTTCSEEECCSSCCCC-C-GG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred hccCCCCCEEEecCCcccc-c-cc-ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCE
Confidence 4455666666666665543 1 11 344555555555555555442 24444555555555555444332 334444444
Q ss_pred EEccccccccchh---------------------hhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcH
Q psy3785 103 FNVSNNMIAKISD---------------------NIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPW 161 (184)
Q Consensus 103 L~l~~n~~~~~~~---------------------~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~ 161 (184)
|++++|.++.++. .+..++.|+.+++++|.++.++. +..+++|+.+++++|.+++++
T Consensus 270 L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~- 347 (466)
T 1o6v_A 270 LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS- 347 (466)
T ss_dssp EECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-
T ss_pred EECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch-
Confidence 4444444444333 14444555555555555554433 344555555555555555542
Q ss_pred HHhhhhhccccccccccc
Q psy3785 162 KLFSKFHQNRSSRFGCAL 179 (184)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~ 179 (184)
.+..++.++.+.++++.
T Consensus 348 -~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 348 -SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp -GGTTCTTCCEEECCSSC
T ss_pred -hhccCCCCCEEeCCCCc
Confidence 23344555555554443
No 102
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.64 E-value=1.1e-15 Score=125.31 Aligned_cols=140 Identities=21% Similarity=0.270 Sum_probs=121.4
Q ss_pred cccCCCcCccccEEEeecCCCCCC-CCcccccCCCCccEEEecCCcccc-Cchh-hhCCCCCCEEEcccCcccc-chhhh
Q psy3785 19 LVGSASASALLYTYEISSDTGSGE-SNMSQSEPVLKLKVLNLQYNNLKG-LPDE-IRHLTNLNELALNNNQLEM-INEAV 94 (184)
Q Consensus 19 ~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~-lp~~-~~~l~~L~~L~l~~n~l~~-~~~~~ 94 (184)
++..+..+++|+.|++++|.+... .+|..+..+++|++|++++|.+++ +|.. +..+++|+.|++++|.++. +|..+
T Consensus 369 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 448 (562)
T 3a79_B 369 VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448 (562)
T ss_dssp TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC
T ss_pred hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh
Confidence 567788999999999999998752 235678899999999999999998 8765 7788999999999999873 33332
Q ss_pred cCCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCC-Cc
Q psy3785 95 YDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISY-VP 160 (184)
Q Consensus 95 ~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~-~~ 160 (184)
. ++|+.|++++|+++.+|..+..++.|+.+++++|.++.+|.. +..++.|+.+++++|++.+ .+
T Consensus 449 ~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 449 P--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp C--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred c--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 2 689999999999999998888999999999999999999987 8889999999999999998 44
No 103
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.64 E-value=3.1e-15 Score=119.99 Aligned_cols=127 Identities=25% Similarity=0.264 Sum_probs=67.0
Q ss_pred CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCce
Q psy3785 22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLY 101 (184)
Q Consensus 22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~ 101 (184)
.+..+++|+.|++++|.+.+ ++ ++.+++|++|++++|.+++++ +..+++|++|++++|.++.+| +..+++|+
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~ 130 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLT 130 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCC
T ss_pred hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCC
Confidence 45556666666666666553 22 455666666666666666654 555666666666666666553 44556666
Q ss_pred EEEccccccccchhhhcCCCCCCEEEccCC-CCCCcchhhhcCCCCCEEeccCCCCCCCc
Q psy3785 102 KFNVSNNMIAKISDNIGNLTSLLVLNISNN-KIESLPENIGYMKSLTHIDASHNTISYVP 160 (184)
Q Consensus 102 ~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n-~l~~l~~~~~~~~~L~~l~L~~n~l~~~~ 160 (184)
+|++++|.++.++ ++.++.|+.+++++| .+..+ .++.++.|+.+++++|.++++|
T Consensus 131 ~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~ 186 (457)
T 3bz5_A 131 YLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD 186 (457)
T ss_dssp EEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC
T ss_pred EEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec
Confidence 6666666655442 334444444444444 12222 1333444455555555554443
No 104
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=5.2e-16 Score=125.38 Aligned_cols=152 Identities=20% Similarity=0.235 Sum_probs=90.6
Q ss_pred cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhh-----------
Q psy3785 25 ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEA----------- 93 (184)
Q Consensus 25 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~----------- 93 (184)
..++|+.|++++|.+.. ..|..+..+++|+.|++++|.+++.++ +..+++|++|++++|.++.+|..
T Consensus 32 ~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N 109 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANN 109 (487)
T ss_dssp TGGGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred cCCCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCC
Confidence 45578888888887765 445677777888888888888776543 67777777777777777655421
Q ss_pred ------hcCCCCceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCc-chhhh-cCCCCCEEeccCCCCCCCcHHHh
Q psy3785 94 ------VYDLPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESL-PENIG-YMKSLTHIDASHNTISYVPWKLF 164 (184)
Q Consensus 94 ------~~~l~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l-~~~~~-~~~~L~~l~L~~n~l~~~~~~~~ 164 (184)
...+++|+.|++++|.++.+ |..++.++.|+.|++++|.++.+ |..+. .++.|+.+++++|.+++++...
T Consensus 110 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~- 188 (487)
T 3oja_A 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV- 188 (487)
T ss_dssp CCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-
T ss_pred cCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc-
Confidence 01234555555555555544 33455556666666666666543 33332 4566666666666666543322
Q ss_pred hhhhcccccccccccc
Q psy3785 165 SKFHQNRSSRFGCALI 180 (184)
Q Consensus 165 ~~~~~l~~~~~~~~~~ 180 (184)
.++.|+.+.++.|.+
T Consensus 189 -~l~~L~~L~Ls~N~l 203 (487)
T 3oja_A 189 -VFAKLKTLDLSSNKL 203 (487)
T ss_dssp -CCTTCCEEECCSSCC
T ss_pred -cCCCCCEEECCCCCC
Confidence 245555555554443
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.63 E-value=2.2e-15 Score=123.68 Aligned_cols=142 Identities=31% Similarity=0.335 Sum_probs=103.0
Q ss_pred ccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhc
Q psy3785 16 LVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVY 95 (184)
Q Consensus 16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~ 95 (184)
+..++..+ .++|+.|++++|.+. .+| ..+++|+.|++++|.++++|. +.+ +|+.|++++|.++.+|.
T Consensus 71 L~~lp~~l--~~~L~~L~Ls~N~l~--~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~--- 137 (571)
T 3cvr_A 71 LSSLPDNL--PPQITVLEITQNALI--SLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE--- 137 (571)
T ss_dssp CSCCCSCC--CTTCSEEECCSSCCS--CCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC---
T ss_pred CCccCHhH--cCCCCEEECcCCCCc--ccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC---
Confidence 34455444 367888888888776 455 346788888888888888776 544 78888888888887766
Q ss_pred CCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcc-----
Q psy3785 96 DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQN----- 170 (184)
Q Consensus 96 ~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l----- 170 (184)
.+++|+.|++++|.++.+|. .++.|+.|++++|.++.+|. +. ++|+.+++++|.|+.+|. +.. .+
T Consensus 138 ~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~---~L~~~~~ 207 (571)
T 3cvr_A 138 LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV---RNHHSEE 207 (571)
T ss_dssp CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC-----------
T ss_pred cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH---hhhcccc
Confidence 56788888888888887766 56788888888888888777 44 788888888888888777 332 44
Q ss_pred --cccccccccc
Q psy3785 171 --RSSRFGCALI 180 (184)
Q Consensus 171 --~~~~~~~~~~ 180 (184)
+.+.++.|.+
T Consensus 208 ~L~~L~Ls~N~l 219 (571)
T 3cvr_A 208 TEIFFRCRENRI 219 (571)
T ss_dssp CCEEEECCSSCC
T ss_pred cceEEecCCCcc
Confidence 6666665544
No 106
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=2.2e-15 Score=107.62 Aligned_cols=124 Identities=29% Similarity=0.420 Sum_probs=109.8
Q ss_pred ccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccch-hhhcCCCCCCEEEccCCC
Q psy3785 54 LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKIS-DNIGNLTSLLVLNISNNK 132 (184)
Q Consensus 54 L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~ 132 (184)
-+.++++++.++.+|..+. +.++.|++++|.++.+|..+..+++|+.|++++|.++.++ ..+.+++.|+.|++++|.
T Consensus 12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 3678999999999987653 5899999999999999988889999999999999999885 568999999999999999
Q ss_pred CCCcch-hhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccccc
Q psy3785 133 IESLPE-NIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCAL 179 (184)
Q Consensus 133 l~~l~~-~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~ 179 (184)
++.++. .+..+++|+.+++++|.|+.+|...+..++.++.+.++.|.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 998865 58889999999999999999999888888888877776543
No 107
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.62 E-value=1.4e-15 Score=125.44 Aligned_cols=138 Identities=20% Similarity=0.213 Sum_probs=63.1
Q ss_pred CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCccc-c-chhhhcCCC
Q psy3785 22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLE-M-INEAVYDLP 98 (184)
Q Consensus 22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~-~-~~~~~~~l~ 98 (184)
.+..++.|+.+++..++......+..+..+..++.++++.|.+..+ +..+..++.++.|++++|.+. . .|..+..++
T Consensus 415 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~ 494 (635)
T 4g8a_A 415 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 494 (635)
T ss_dssp CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred cccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc
Confidence 3344455555555444433322333344444555555555554443 223344445555555554322 1 233344444
Q ss_pred CceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCcch-hhhcCCCCCEEeccCCCCCCC
Q psy3785 99 HLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESLPE-NIGYMKSLTHIDASHNTISYV 159 (184)
Q Consensus 99 ~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~L~~n~l~~~ 159 (184)
+|+.|++++|+++.+ |..+.+++.|+.|++++|+++.++. .+..+++|+.+++++|.|+++
T Consensus 495 ~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 557 (635)
T 4g8a_A 495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 557 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBC
T ss_pred ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCC
Confidence 555555555554443 2344445555555555555544432 244445555555555555553
No 108
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=1.5e-14 Score=101.62 Aligned_cols=129 Identities=22% Similarity=0.271 Sum_probs=106.8
Q ss_pred ccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hhCCCCCCEEEcccCccccchhh-hcCCCCceEEEcc
Q psy3785 29 LYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINEA-VYDLPHLYKFNVS 106 (184)
Q Consensus 29 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~l~~L~l~ 106 (184)
.+.++.+++... .+|..+ .++++.|++++|.++++|.. +..+++|++|++++|.++.++.. +..+++|+.|+++
T Consensus 9 ~~~l~~~~~~l~--~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT--SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS--SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc--cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 357777777765 455443 36899999999999997654 68899999999999999988754 5689999999999
Q ss_pred ccccccchh-hhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCCCcH
Q psy3785 107 NNMIAKISD-NIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPW 161 (184)
Q Consensus 107 ~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~ 161 (184)
+|.++.++. .+..++.|+.+++++|.++.+|.. +..+++|+.+++++|++.+...
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999998865 478899999999999999988765 5778999999999999998443
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=2.8e-15 Score=123.12 Aligned_cols=119 Identities=21% Similarity=0.263 Sum_probs=103.1
Q ss_pred CccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchhhhcCCCCCCEEEccCCC
Q psy3785 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNK 132 (184)
Q Consensus 53 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~ 132 (184)
.|+.|++++|.++++|. +..+++|+.|++++|.++.+|..+..+++|+.|++++|.++.+| .++.++.|+.|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 57889999999999987 88999999999999999999988889999999999999999887 78999999999999999
Q ss_pred CCCc--chhhhcCCCCCEEeccCCCCCCCcHH---Hhhhhhccccc
Q psy3785 133 IESL--PENIGYMKSLTHIDASHNTISYVPWK---LFSKFHQNRSS 173 (184)
Q Consensus 133 l~~l--~~~~~~~~~L~~l~L~~n~l~~~~~~---~~~~~~~l~~~ 173 (184)
++.+ |..++.+++|+.+++++|+++++|.. +...++.|+.+
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 9977 78899999999999999999986543 34445666554
No 110
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.61 E-value=1.1e-14 Score=116.73 Aligned_cols=61 Identities=25% Similarity=0.179 Sum_probs=32.3
Q ss_pred CCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCcccc
Q psy3785 23 ASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEM 89 (184)
Q Consensus 23 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~ 89 (184)
++.+++|+.|++++|.+.+. + ++.+++|++|++++|.++++| +..+++|++|++++|.++.
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~ 141 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNL--D--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE 141 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCC--C--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC
T ss_pred cccCCCCCEEECcCCCCcee--e--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccce
Confidence 45555666666666655531 1 445555555555555555543 4445555555555555443
No 111
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.61 E-value=3.4e-16 Score=120.26 Aligned_cols=155 Identities=14% Similarity=0.162 Sum_probs=85.1
Q ss_pred cCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc-CchhhhCCCCCCEEEcccC-ccc--cchhhhcC
Q psy3785 21 GSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNN-QLE--MINEAVYD 96 (184)
Q Consensus 21 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n-~l~--~~~~~~~~ 96 (184)
..+..+++|+.|++++|.+.+..++..+..+++|++|++++|.+++ .+..+..+++|++|++++| .++ .++..+..
T Consensus 87 ~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~ 166 (336)
T 2ast_B 87 AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 166 (336)
T ss_dssp CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred hhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc
Confidence 3344566666666666665442255555666666666666666654 4455555666666666666 455 24444445
Q ss_pred CCCceEEEcccc-cccc--chhhhcCCC-CCCEEEccCC--CCC--CcchhhhcCCCCCEEeccCCC-CCC-CcHHHhhh
Q psy3785 97 LPHLYKFNVSNN-MIAK--ISDNIGNLT-SLLVLNISNN--KIE--SLPENIGYMKSLTHIDASHNT-ISY-VPWKLFSK 166 (184)
Q Consensus 97 l~~l~~L~l~~n-~~~~--~~~~~~~~~-~L~~l~l~~n--~l~--~l~~~~~~~~~L~~l~L~~n~-l~~-~~~~~~~~ 166 (184)
+++|++|++++| .++. ++..+..++ .|+.+++++| .++ .++..+..+++|+.+++++|. ++. .+. .+..
T Consensus 167 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~ 245 (336)
T 2ast_B 167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQ 245 (336)
T ss_dssp CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGG
T ss_pred CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhC
Confidence 666666666666 5552 344455555 6666666666 232 344445555666666666665 443 222 2233
Q ss_pred hhcccccccc
Q psy3785 167 FHQNRSSRFG 176 (184)
Q Consensus 167 ~~~l~~~~~~ 176 (184)
++.|+.+.++
T Consensus 246 l~~L~~L~l~ 255 (336)
T 2ast_B 246 LNYLQHLSLS 255 (336)
T ss_dssp CTTCCEEECT
T ss_pred CCCCCEeeCC
Confidence 3555544443
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=4.5e-15 Score=121.95 Aligned_cols=120 Identities=22% Similarity=0.279 Sum_probs=108.2
Q ss_pred cccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccc
Q psy3785 28 LLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSN 107 (184)
Q Consensus 28 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~ 107 (184)
.|+.|++++|.+.. +|. +..+++|+.|++++|.++.+|..+..+++|+.|++++|.++.+| .+..+++|+.|++++
T Consensus 442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCC--CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 58899999999874 566 89999999999999999999999999999999999999999998 788999999999999
Q ss_pred cccccc--hhhhcCCCCCCEEEccCCCCCCcchh----hhcCCCCCEEec
Q psy3785 108 NMIAKI--SDNIGNLTSLLVLNISNNKIESLPEN----IGYMKSLTHIDA 151 (184)
Q Consensus 108 n~~~~~--~~~~~~~~~L~~l~l~~n~l~~l~~~----~~~~~~L~~l~L 151 (184)
|.++.+ |..++.++.|+.+++++|.++.+|+. ...+++|+.+++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999977 88899999999999999999976543 445889998864
No 113
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.60 E-value=2.4e-18 Score=123.32 Aligned_cols=113 Identities=27% Similarity=0.295 Sum_probs=79.4
Q ss_pred CcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchhhhcCCCCC
Q psy3785 44 NMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSL 123 (184)
Q Consensus 44 ~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L 123 (184)
+|..+..+++|++|++++|.++++| .+..+++|++|++++|.++.+|..+..+++|+.|++++|.++.+| .+..++.|
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L 117 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNL 117 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHS
T ss_pred hhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCC
Confidence 3346667777777777777777776 666777777777777777776655555667777777777777665 46666777
Q ss_pred CEEEccCCCCCCcch--hhhcCCCCCEEeccCCCCCC
Q psy3785 124 LVLNISNNKIESLPE--NIGYMKSLTHIDASHNTISY 158 (184)
Q Consensus 124 ~~l~l~~n~l~~l~~--~~~~~~~L~~l~L~~n~l~~ 158 (184)
+.+++++|.++.++. .+..+++|+.+++++|++++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 777777777776553 46667777777777777755
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=2.4e-15 Score=107.23 Aligned_cols=125 Identities=23% Similarity=0.321 Sum_probs=107.6
Q ss_pred ccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhh--hcCCCCceEEEccccccccc-hhhhcCCCCCCEEEccC
Q psy3785 54 LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEA--VYDLPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISN 130 (184)
Q Consensus 54 L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~--~~~l~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~ 130 (184)
-+.++++++.++.+|..+.. +++.|++++|.++.++.. +..+++|++|++++|.++.+ |..+.+++.|+.+++++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 37899999999999986644 899999999999988753 77899999999999999977 67899999999999999
Q ss_pred CCCCCcchh-hhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccccc
Q psy3785 131 NKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALI 180 (184)
Q Consensus 131 n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~ 180 (184)
|.++.++.. +..+++|+.+++++|.+++++...+..++.++.+.++.|.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 999977654 78899999999999999997666777778888777766543
No 115
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.59 E-value=5.2e-15 Score=126.60 Aligned_cols=140 Identities=22% Similarity=0.260 Sum_probs=115.5
Q ss_pred cccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCcccc-chhh--h
Q psy3785 19 LVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEM-INEA--V 94 (184)
Q Consensus 19 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~-~~~~--~ 94 (184)
.+..++.+++|+.|++++|.......|..+.++++|+.|++++|.++++ |..+.++++|++|++++|.++. +|.. +
T Consensus 40 ~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 119 (844)
T 3j0a_A 40 TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119 (844)
T ss_dssp CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccc
Confidence 3577889999999999999766544478899999999999999999986 7789999999999999999884 4544 7
Q ss_pred cCCCCceEEEccccccccc--hhhhcCCCCCCEEEccCCCCCCc-chhhhcC--CCCCEEeccCCCCCC
Q psy3785 95 YDLPHLYKFNVSNNMIAKI--SDNIGNLTSLLVLNISNNKIESL-PENIGYM--KSLTHIDASHNTISY 158 (184)
Q Consensus 95 ~~l~~l~~L~l~~n~~~~~--~~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~--~~L~~l~L~~n~l~~ 158 (184)
..+++|++|++++|.++.+ +..++++++|+.|++++|.++.+ +..+..+ ++|+.+++++|.+.+
T Consensus 120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~ 188 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS 188 (844)
T ss_dssp SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCC
T ss_pred cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccc
Confidence 7899999999999999865 35789999999999999998854 4445444 677777777777766
No 116
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.59 E-value=1.2e-14 Score=116.54 Aligned_cols=123 Identities=28% Similarity=0.394 Sum_probs=58.3
Q ss_pred ccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCC-------
Q psy3785 27 ALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPH------- 99 (184)
Q Consensus 27 ~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~------- 99 (184)
++|+.|++++|.+.+ +| .++.+++|++|++++|.++++|..+ .+|++|++++|.++.+| .+..+++
T Consensus 131 ~~L~~L~L~~n~l~~--lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK--LP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSS--CC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCC--Cc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECC
Confidence 355555555555442 33 3455555555555555555444321 24444444444444443 2334444
Q ss_pred -------------ceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCc
Q psy3785 100 -------------LYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160 (184)
Q Consensus 100 -------------l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~ 160 (184)
+++|++++|.++.+|. ++.++.|+.+++++|.++.+|.. .++|+.+++++|.++++|
T Consensus 204 ~N~l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~ 273 (454)
T 1jl5_A 204 NNSLKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLP 273 (454)
T ss_dssp SSCCSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccC
Confidence 4444444444444442 44555555555555555544431 234445555555444443
No 117
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.58 E-value=4.8e-16 Score=121.87 Aligned_cols=43 Identities=19% Similarity=0.065 Sum_probs=23.1
Q ss_pred CCcCccccEEEeecCCCCCC---CCcccccCCCCccEEEecCCccc
Q psy3785 23 ASASALLYTYEISSDTGSGE---SNMSQSEPVLKLKVLNLQYNNLK 65 (184)
Q Consensus 23 ~~~~~~l~~l~l~~~~~~~~---~~~~~~~~l~~L~~L~l~~n~l~ 65 (184)
+..+++|+.|++++|.+... .++..+..+++|+.|++++|.++
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 34556666666666665542 13444455555555555555554
No 118
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=1.9e-15 Score=116.01 Aligned_cols=158 Identities=16% Similarity=0.138 Sum_probs=102.2
Q ss_pred cccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCC-cccc--CchhhhCCCCCCEEEcccC-cccc--chh
Q psy3785 19 LVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYN-NLKG--LPDEIRHLTNLNELALNNN-QLEM--INE 92 (184)
Q Consensus 19 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~--lp~~~~~l~~L~~L~l~~n-~l~~--~~~ 92 (184)
++..+..+++|+.|++++|.+.+ ..+..+..+++|++|++++| .+++ ++..+..+++|++|++++| .++. ++.
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~-~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSD-PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCH-HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHHHHhhCCCCCEEeCcCcccCH-HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 44455677788888888877554 45666677788888888887 5664 5555677778888888887 7763 455
Q ss_pred hhcCCC-CceEEEccccc--cc--cchhhhcCCCCCCEEEccCCC-CC-CcchhhhcCCCCCEEeccCCC-CCCCcHHHh
Q psy3785 93 AVYDLP-HLYKFNVSNNM--IA--KISDNIGNLTSLLVLNISNNK-IE-SLPENIGYMKSLTHIDASHNT-ISYVPWKLF 164 (184)
Q Consensus 93 ~~~~l~-~l~~L~l~~n~--~~--~~~~~~~~~~~L~~l~l~~n~-l~-~l~~~~~~~~~L~~l~L~~n~-l~~~~~~~~ 164 (184)
.+..++ +|++|++++|. ++ .++..+..+++|+.+++++|. ++ ..+..+..+++|+.+++++|. +....-..+
T Consensus 189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l 268 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL 268 (336)
T ss_dssp HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG
T ss_pred HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH
Confidence 566677 77888887773 33 445566677777777777777 54 445556667777777777775 211111123
Q ss_pred hhhhccccccccc
Q psy3785 165 SKFHQNRSSRFGC 177 (184)
Q Consensus 165 ~~~~~l~~~~~~~ 177 (184)
..++.|+.+.+++
T Consensus 269 ~~~~~L~~L~l~~ 281 (336)
T 2ast_B 269 GEIPTLKTLQVFG 281 (336)
T ss_dssp GGCTTCCEEECTT
T ss_pred hcCCCCCEEeccC
Confidence 3455555555543
No 119
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=4.3e-14 Score=99.25 Aligned_cols=126 Identities=22% Similarity=0.358 Sum_probs=109.1
Q ss_pred CccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhh-hcCCCCceEEEccccccccchh-hhcCCCCCCEEEccC
Q psy3785 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEA-VYDLPHLYKFNVSNNMIAKISD-NIGNLTSLLVLNISN 130 (184)
Q Consensus 53 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~ 130 (184)
..+.++++++.+..+|..+. ++++.|++++|.++.++.. +..+++|++|++++|.++.++. .+..++.|+.+++++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 35789999999999986653 6899999999999988754 5689999999999999998865 478999999999999
Q ss_pred CCCCCcchh-hhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccccc
Q psy3785 131 NKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALI 180 (184)
Q Consensus 131 n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~ 180 (184)
|.++.++.. +..+++|+.+++++|.++++|...+..++.++.+.++.|.+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 999988765 67899999999999999999988888888888888876654
No 120
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.55 E-value=3.9e-14 Score=113.52 Aligned_cols=137 Identities=21% Similarity=0.264 Sum_probs=86.3
Q ss_pred ccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEcc
Q psy3785 27 ALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVS 106 (184)
Q Consensus 27 ~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~ 106 (184)
++|+.|++++|.+.+ ++.. .++|++|++++|.++++| .+..+++|++|++++|.++.+|.. ..+|++|+++
T Consensus 111 ~~L~~L~l~~n~l~~--l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~ 181 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA--LSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAG 181 (454)
T ss_dssp TTCCEEECCSSCCSC--CCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECC
T ss_pred CCCcEEECCCCccCc--ccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECc
Confidence 455555555555442 2221 157888888888888877 477888888888888888776643 3478888888
Q ss_pred ccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccc
Q psy3785 107 NNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCA 178 (184)
Q Consensus 107 ~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~ 178 (184)
+|.++.+| .+++++.|+.+++++|.++.+|.. .++|+.+++++|.++.+|. +..++.++.+.++.+
T Consensus 182 ~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 182 NNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILEELPE--LQNLPFLTTIYADNN 247 (454)
T ss_dssp SSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSS
T ss_pred CCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCCcccc--cCCCCCCCEEECCCC
Confidence 88888776 477777777777777776655432 1345555555555555442 334444444444433
No 121
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=1.3e-14 Score=112.45 Aligned_cols=158 Identities=22% Similarity=0.198 Sum_probs=81.1
Q ss_pred ccccccc-CCCcCccccEEEeecCCCCCCCCcccccCCCCccE-EEecCCccccC-chhhhCCCCCCEEEcccCccccch
Q psy3785 15 RLVSLVG-SASASALLYTYEISSDTGSGESNMSQSEPVLKLKV-LNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMIN 91 (184)
Q Consensus 15 ~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~-L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~ 91 (184)
.+..++. .++.+++|+.|++++|.+.....+..+.+++++.+ +.+.+|++..+ |..+..+++|++|++++|.++.+|
T Consensus 41 ~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~ 120 (350)
T 4ay9_X 41 KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP 120 (350)
T ss_dssp CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCC
T ss_pred cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCC
Confidence 3444543 35666777777777766554222334555555544 44455666665 334566666666666666655433
Q ss_pred h-hhcCCC--------------------------CceEEEccccccccchhhhcCCCCCCEEEccC-CCCCCcchh-hhc
Q psy3785 92 E-AVYDLP--------------------------HLYKFNVSNNMIAKISDNIGNLTSLLVLNISN-NKIESLPEN-IGY 142 (184)
Q Consensus 92 ~-~~~~l~--------------------------~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~-n~l~~l~~~-~~~ 142 (184)
. .+.... .++.|++++|+++.++........++.+++.+ |.++.+|.. +..
T Consensus 121 ~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~ 200 (350)
T 4ay9_X 121 DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG 200 (350)
T ss_dssp CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTT
T ss_pred chhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhcc
Confidence 2 111111 23444445555444444333334455555542 444455432 345
Q ss_pred CCCCCEEeccCCCCCCCcHHHhhhhhcccc
Q psy3785 143 MKSLTHIDASHNTISYVPWKLFSKFHQNRS 172 (184)
Q Consensus 143 ~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~ 172 (184)
+++|+.+++++|.|+.+|...+..+..|+.
T Consensus 201 l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~ 230 (350)
T 4ay9_X 201 ASGPVILDISRTRIHSLPSYGLENLKKLRA 230 (350)
T ss_dssp EECCSEEECTTSCCCCCCSSSCTTCCEEEC
T ss_pred CcccchhhcCCCCcCccChhhhccchHhhh
Confidence 566666666666666666555554444443
No 122
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.55 E-value=8.3e-14 Score=115.47 Aligned_cols=75 Identities=19% Similarity=0.236 Sum_probs=35.8
Q ss_pred CCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccc
Q psy3785 98 PHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGC 177 (184)
Q Consensus 98 ~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~ 177 (184)
++|+.|++++|.++.+| ..++.|+.+++++|.++.+|. .+++|+.+++++|.|+.+|.. +..++.|+.+.++.
T Consensus 221 ~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~-l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEG 293 (622)
T ss_dssp TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGG-GGGSCTTCEEECCS
T ss_pred CCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHH-HhhccccCEEEecC
Confidence 34444555555444443 233445555555555554443 344455555555555555543 33344455444444
Q ss_pred cc
Q psy3785 178 AL 179 (184)
Q Consensus 178 ~~ 179 (184)
|.
T Consensus 294 N~ 295 (622)
T 3g06_A 294 NP 295 (622)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 123
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.54 E-value=8.2e-14 Score=115.51 Aligned_cols=131 Identities=24% Similarity=0.240 Sum_probs=80.6
Q ss_pred cccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhh
Q psy3785 15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAV 94 (184)
Q Consensus 15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~ 94 (184)
.+..+|..+. ++|+.|++++|.+. .+|. .+++|+.|++++|.++.+|. .+++|++|++++|.++.+|.
T Consensus 51 ~L~~lp~~l~--~~L~~L~L~~N~l~--~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~-- 118 (622)
T 3g06_A 51 GLTTLPDCLP--AHITTLVIPDNNLT--SLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA-- 118 (622)
T ss_dssp CCSCCCSCCC--TTCSEEEECSCCCS--CCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC--
T ss_pred CcCccChhhC--CCCcEEEecCCCCC--CCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC--
Confidence 3445555443 67777777777766 3444 45677777777777777765 45677777777777766655
Q ss_pred cCCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhh-----------------hcCCCCCEEeccCCCCC
Q psy3785 95 YDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENI-----------------GYMKSLTHIDASHNTIS 157 (184)
Q Consensus 95 ~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~-----------------~~~~~L~~l~L~~n~l~ 157 (184)
.+++|+.|++++|.++.+|.. +++|+.|++++|.++.+|... ..+++|+.+++++|.++
T Consensus 119 -~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~ 194 (622)
T 3g06_A 119 -LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA 194 (622)
T ss_dssp -CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred -CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCC
Confidence 345566666666666655442 255556666655555443221 22366777777777777
Q ss_pred CCcH
Q psy3785 158 YVPW 161 (184)
Q Consensus 158 ~~~~ 161 (184)
++|.
T Consensus 195 ~l~~ 198 (622)
T 3g06_A 195 SLPT 198 (622)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=8.4e-17 Score=115.27 Aligned_cols=137 Identities=18% Similarity=0.188 Sum_probs=116.5
Q ss_pred ccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhc
Q psy3785 16 LVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVY 95 (184)
Q Consensus 16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~ 95 (184)
+..++..+..++.|+.|++++|.+.. +| .+..+++|+.|++++|.++.+|..+..+++|++|++++|.++.+| .+.
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~ 112 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIE 112 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccc
Confidence 34444577889999999999999875 56 888899999999999999999988888899999999999999887 567
Q ss_pred CCCCceEEEccccccccchh--hhcCCCCCCEEEccCCCCCCcch-----------hhhcCCCCCEEeccCCCCCC
Q psy3785 96 DLPHLYKFNVSNNMIAKISD--NIGNLTSLLVLNISNNKIESLPE-----------NIGYMKSLTHIDASHNTISY 158 (184)
Q Consensus 96 ~l~~l~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~l~~l~~-----------~~~~~~~L~~l~L~~n~l~~ 158 (184)
.+++|+.|++++|.++.++. .+..++.|+.+++++|.+...++ .+..++.|+.++ ++.++.
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 78899999999999997754 78899999999999999874422 267899999987 777766
No 125
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.53 E-value=7.4e-14 Score=98.06 Aligned_cols=105 Identities=29% Similarity=0.387 Sum_probs=64.7
Q ss_pred cEEEecCCccccCchhhhCCCCCCEEEcccCccccc-hhhhcCCCCceEEEccccccccchhh-hcCCCCCCEEEccCCC
Q psy3785 55 KVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIAKISDN-IGNLTSLLVLNISNNK 132 (184)
Q Consensus 55 ~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~l~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~ 132 (184)
+.++++++.++.+|..+. ++++.|++++|.++.+ |..+..+++|++|++++|+++.+|.. +..++.|+.+++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 456666666666665443 5666666666666655 34455566666666666666666543 4566666666666666
Q ss_pred CCCcchh-hhcCCCCCEEeccCCCCCCCcH
Q psy3785 133 IESLPEN-IGYMKSLTHIDASHNTISYVPW 161 (184)
Q Consensus 133 l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~ 161 (184)
++.+|.. +..+++|+.+++++|++...+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred cceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 6666543 5566667777777776666443
No 126
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.53 E-value=7.4e-14 Score=97.65 Aligned_cols=105 Identities=25% Similarity=0.351 Sum_probs=73.7
Q ss_pred ccEEEecCCccccCchhhhCCCCCCEEEcccCccccc-hhhhcCCCCceEEEccccccccchh-hhcCCCCCCEEEccCC
Q psy3785 54 LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNN 131 (184)
Q Consensus 54 L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n 131 (184)
.+.+++++|.++.+|..+. ++++.|++++|.++.+ |..+..+++|++|++++|+++.+++ .+..++.|+.+++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4567777777777766552 5677777777777766 3455667777777777777776654 3567777777777777
Q ss_pred CCCCcchh-hhcCCCCCEEeccCCCCCCCc
Q psy3785 132 KIESLPEN-IGYMKSLTHIDASHNTISYVP 160 (184)
Q Consensus 132 ~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~ 160 (184)
.++.++.. +..+++|+.+++++|+++...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 77777653 667777888888888777643
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.52 E-value=1.8e-14 Score=112.86 Aligned_cols=162 Identities=10% Similarity=0.096 Sum_probs=89.5
Q ss_pred cccCCCcCccccEEEeecCCCCCC---CCcccccCC---------CCccEEEecCCcccc--Cc---hhhhCCCCCCEEE
Q psy3785 19 LVGSASASALLYTYEISSDTGSGE---SNMSQSEPV---------LKLKVLNLQYNNLKG--LP---DEIRHLTNLNELA 81 (184)
Q Consensus 19 ~~~~~~~~~~l~~l~l~~~~~~~~---~~~~~~~~l---------~~L~~L~l~~n~l~~--lp---~~~~~l~~L~~L~ 81 (184)
++..+..+++|+.|++++|.+... .++..+..+ ++|+.|++++|.++. ++ ..+..+++|++|+
T Consensus 114 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 193 (386)
T 2ca6_A 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 193 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEE
Confidence 333445566667777766665421 234444444 566666666666652 33 3455566666666
Q ss_pred cccCccc------cchhhhcCCCCceEEEccccccc-----cchhhhcCCCCCCEEEccCCCCCC-----cchhhh--cC
Q psy3785 82 LNNNQLE------MINEAVYDLPHLYKFNVSNNMIA-----KISDNIGNLTSLLVLNISNNKIES-----LPENIG--YM 143 (184)
Q Consensus 82 l~~n~l~------~~~~~~~~l~~l~~L~l~~n~~~-----~~~~~~~~~~~L~~l~l~~n~l~~-----l~~~~~--~~ 143 (184)
+++|.++ .++..+..+++|+.|++++|.++ .+|..+..++.|+.|++++|.++. ++..+. .+
T Consensus 194 L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 273 (386)
T 2ca6_A 194 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN 273 (386)
T ss_dssp CCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSS
T ss_pred CcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccC
Confidence 6666665 12224445666666666666663 345555666666666666666652 233332 25
Q ss_pred CCCCEEeccCCCCCC-----CcHHHhhhhhcccccccccccc
Q psy3785 144 KSLTHIDASHNTISY-----VPWKLFSKFHQNRSSRFGCALI 180 (184)
Q Consensus 144 ~~L~~l~L~~n~l~~-----~~~~~~~~~~~l~~~~~~~~~~ 180 (184)
++|+.+++++|.++. +|..++..++.|+.+.++.+.+
T Consensus 274 ~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 274 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp CCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred CCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 666666666666665 5554444455666555555544
No 128
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=3.5e-14 Score=110.51 Aligned_cols=157 Identities=16% Similarity=0.174 Sum_probs=82.1
Q ss_pred CCcCc-cccEEEeecCCCCCCCCcccccCC-----CCccEEEecCCccccCc-hh----hhCC-CCCCEEEcccCccccc
Q psy3785 23 ASASA-LLYTYEISSDTGSGESNMSQSEPV-----LKLKVLNLQYNNLKGLP-DE----IRHL-TNLNELALNNNQLEMI 90 (184)
Q Consensus 23 ~~~~~-~l~~l~l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~n~l~~lp-~~----~~~l-~~L~~L~l~~n~l~~~ 90 (184)
+..++ .|+.|++++|.+.+ ..+..+..+ ++|++|++++|.+++.+ .. +... ++|++|++++|.++..
T Consensus 46 l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 46 FANTPASVTSLNLSGNSLGF-KNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp HHTCCTTCCEEECCSSCGGG-SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HHhCCCceeEEECcCCCCCH-HHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 34444 56666666666554 223333332 56666666666666532 21 3333 5666666666666643
Q ss_pred hh-h----hcC-CCCceEEEccccccc-----cchhhhcCCC-CCCEEEccCCCCCCcch-----hhhcC-CCCCEEecc
Q psy3785 91 NE-A----VYD-LPHLYKFNVSNNMIA-----KISDNIGNLT-SLLVLNISNNKIESLPE-----NIGYM-KSLTHIDAS 152 (184)
Q Consensus 91 ~~-~----~~~-l~~l~~L~l~~n~~~-----~~~~~~~~~~-~L~~l~l~~n~l~~l~~-----~~~~~-~~L~~l~L~ 152 (184)
+. . +.. ..+|++|++++|.++ .++..+...+ .|+.+++++|.++.... .+... ++|+.++++
T Consensus 125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 204 (362)
T 3goz_A 125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLS 204 (362)
T ss_dssp CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECC
Confidence 31 1 222 236666666666665 2233344444 66777777766653321 23344 367777777
Q ss_pred CCCCCC-----CcHHHhhhhhcccccccccccc
Q psy3785 153 HNTISY-----VPWKLFSKFHQNRSSRFGCALI 180 (184)
Q Consensus 153 ~n~l~~-----~~~~~~~~~~~l~~~~~~~~~~ 180 (184)
+|.++. ++..+....+.++.+.++.|.+
T Consensus 205 ~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 205 ANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp TSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred CCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 777666 2222222234566666666554
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.47 E-value=3.1e-14 Score=110.80 Aligned_cols=151 Identities=15% Similarity=0.230 Sum_probs=76.6
Q ss_pred ccccEEEeecCCCCCCCCcc----cccCC-CCccEEEecCCccccCch-h----hhC-CCCCCEEEcccCccc-----cc
Q psy3785 27 ALLYTYEISSDTGSGESNMS----QSEPV-LKLKVLNLQYNNLKGLPD-E----IRH-LTNLNELALNNNQLE-----MI 90 (184)
Q Consensus 27 ~~l~~l~l~~~~~~~~~~~~----~~~~l-~~L~~L~l~~n~l~~lp~-~----~~~-l~~L~~L~l~~n~l~-----~~ 90 (184)
+.|+.|++++|.+.+ ..+. .+..+ ++|++|++++|.+++.+. . +.. .++|++|++++|.++ .+
T Consensus 80 ~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 80 ANVTSLNLSGNFLSY-KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp TTCCEEECCSSCGGG-SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCccEEECcCCcCCh-HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 566666666666543 2222 12233 566666666666665322 1 222 236666666666665 22
Q ss_pred hhhhcCCC-CceEEEccccccccch-----hhhcCC-CCCCEEEccCCCCCC-----cchhhhc-CCCCCEEeccCCCCC
Q psy3785 91 NEAVYDLP-HLYKFNVSNNMIAKIS-----DNIGNL-TSLLVLNISNNKIES-----LPENIGY-MKSLTHIDASHNTIS 157 (184)
Q Consensus 91 ~~~~~~l~-~l~~L~l~~n~~~~~~-----~~~~~~-~~L~~l~l~~n~l~~-----l~~~~~~-~~~L~~l~L~~n~l~ 157 (184)
+..+...+ +|++|++++|.++..+ ..+..+ +.|+.+++++|.++. ++..+.. .++|+.+++++|.++
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 33333343 6666666666665331 123344 366666666666654 3444444 335666666666666
Q ss_pred CCcHH----Hhhhhhcccccccccc
Q psy3785 158 YVPWK----LFSKFHQNRSSRFGCA 178 (184)
Q Consensus 158 ~~~~~----~~~~~~~l~~~~~~~~ 178 (184)
..+.. .+..+..++.+.++.+
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred cHHHHHHHHHHhcCCCccEEEeccC
Confidence 64331 2233345555555444
No 130
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=9.4e-13 Score=92.38 Aligned_cols=105 Identities=24% Similarity=0.270 Sum_probs=89.0
Q ss_pred cEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCccccchhh-hcCCCCceEEEccc
Q psy3785 30 YTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINEA-VYDLPHLYKFNVSN 107 (184)
Q Consensus 30 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~l~~L~l~~ 107 (184)
+.++++++.+. .+|..+. ++|++|++++|.++++ |..+..+++|+.|++++|+++.+|.. +..+++|+.|++++
T Consensus 15 ~~l~~~~n~l~--~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA--SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS--SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC--ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 67888888875 6677654 7899999999999997 56688999999999999999988865 46899999999999
Q ss_pred cccccchhh-hcCCCCCCEEEccCCCCCCcch
Q psy3785 108 NMIAKISDN-IGNLTSLLVLNISNNKIESLPE 138 (184)
Q Consensus 108 n~~~~~~~~-~~~~~~L~~l~l~~n~l~~l~~ 138 (184)
|.++.+|+. +..++.|+.+++++|.+...+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 999988764 8889999999999999885543
No 131
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=1e-12 Score=91.80 Aligned_cols=103 Identities=27% Similarity=0.319 Sum_probs=87.0
Q ss_pred ccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCccccchhh-hcCCCCceEEEcc
Q psy3785 29 LYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINEA-VYDLPHLYKFNVS 106 (184)
Q Consensus 29 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~l~~L~l~ 106 (184)
.+.++++++.+. .+|..+ .+++++|++++|.++++ |..+..+++|++|++++|+++.+|.. +..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~--~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA--SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS--SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC--ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 467888888876 566655 37899999999999997 56688899999999999999988755 4689999999999
Q ss_pred ccccccchh-hhcCCCCCCEEEccCCCCCC
Q psy3785 107 NNMIAKISD-NIGNLTSLLVLNISNNKIES 135 (184)
Q Consensus 107 ~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~ 135 (184)
+|.++.+++ .+..++.|+.+++++|.++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 999998865 58889999999999998873
No 132
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.42 E-value=4.1e-13 Score=104.03 Aligned_cols=159 Identities=18% Similarity=0.224 Sum_probs=111.6
Q ss_pred cccccc-ccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecC-CccccCchh-hhCCC-CCCEEEcccCcccc
Q psy3785 14 ARLVSL-VGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQY-NNLKGLPDE-IRHLT-NLNELALNNNQLEM 89 (184)
Q Consensus 14 ~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~lp~~-~~~l~-~L~~L~l~~n~l~~ 89 (184)
..+..+ +..+..+++|+.+++++|.+.. ..+..+....++..+++.+ +.+..++.. +..+. .++.|++++|.++.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 334444 3445677777777777777664 2233444455666777754 456666543 44443 68889999999999
Q ss_pred chhhhcCCCCceEEEccc-cccccchh-hhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCC-CCCCCcHHHhhh
Q psy3785 90 INEAVYDLPHLYKFNVSN-NMIAKISD-NIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN-TISYVPWKLFSK 166 (184)
Q Consensus 90 ~~~~~~~l~~l~~L~l~~-n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n-~l~~~~~~~~~~ 166 (184)
+|...+...+++.+.+.+ |.++.+|. .+.+++.|+.+++++|+++.+|.. .+..|..+.+.++ .++.+|. +..
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~--l~~ 244 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT--LEK 244 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC--TTT
T ss_pred CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC--chh
Confidence 988877788999999975 67888875 578999999999999999999863 3556666665554 5777874 455
Q ss_pred hhccccccccc
Q psy3785 167 FHQNRSSRFGC 177 (184)
Q Consensus 167 ~~~l~~~~~~~ 177 (184)
+.+|+...+..
T Consensus 245 l~~L~~l~l~~ 255 (350)
T 4ay9_X 245 LVALMEASLTY 255 (350)
T ss_dssp CCSCCEEECSC
T ss_pred CcChhhCcCCC
Confidence 66666555543
No 133
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.36 E-value=4.2e-13 Score=107.05 Aligned_cols=159 Identities=16% Similarity=0.162 Sum_probs=115.6
Q ss_pred CCcCccccEEEeecCCCCCC---CCcccccCCCCccEEEecCCccccC-chhh-hCCC----CCCEEEcccCccc-----
Q psy3785 23 ASASALLYTYEISSDTGSGE---SNMSQSEPVLKLKVLNLQYNNLKGL-PDEI-RHLT----NLNELALNNNQLE----- 88 (184)
Q Consensus 23 ~~~~~~l~~l~l~~~~~~~~---~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~-~~l~----~L~~L~l~~n~l~----- 88 (184)
+..+++|+.+++++|.+... .++..+..+++|++|++++|.+++. +..+ ..++ +|++|++++|.++
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 56788899999999987642 3466777789999999999988762 2232 3344 6999999999888
Q ss_pred cchhhhcCCCCceEEEccccccccc-hh----h-hcCCCCCCEEEccCCCCCC-----cchhhhcCCCCCEEeccCCCCC
Q psy3785 89 MINEAVYDLPHLYKFNVSNNMIAKI-SD----N-IGNLTSLLVLNISNNKIES-----LPENIGYMKSLTHIDASHNTIS 157 (184)
Q Consensus 89 ~~~~~~~~l~~l~~L~l~~n~~~~~-~~----~-~~~~~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~L~~n~l~ 157 (184)
.++..+..+++|++|++++|.++.. +. . ....++|+.+++++|.++. ++..+..+++|+.+++++|.++
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 3467777889999999999988732 22 2 2235679999999998884 3455677899999999999987
Q ss_pred CC-cHHHhhh----hhccccccccccccc
Q psy3785 158 YV-PWKLFSK----FHQNRSSRFGCALIM 181 (184)
Q Consensus 158 ~~-~~~~~~~----~~~l~~~~~~~~~~~ 181 (184)
.. +..+... ...++.+.++.+.+.
T Consensus 184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 184 EAGVRVLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred hHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence 73 3333333 337777777766543
No 134
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.33 E-value=7e-12 Score=96.74 Aligned_cols=90 Identities=23% Similarity=0.261 Sum_probs=45.4
Q ss_pred CcccccCCCCccEEEecC-CccccCc-hhhhCCCCCCEEEcccCccccch-hhhcCCCCceEEEccccccccchhhhcCC
Q psy3785 44 NMSQSEPVLKLKVLNLQY-NNLKGLP-DEIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNMIAKISDNIGNL 120 (184)
Q Consensus 44 ~~~~~~~l~~L~~L~l~~-n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l~~L~l~~n~~~~~~~~~~~~ 120 (184)
+|. +..+.+|++|++++ |.++.+| ..|..+++|+.|+|++|+++.++ ..+..+++|+.|++++|.++.+|+.....
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 102 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHccc
Confidence 444 55555555555553 5555543 33555555555555555555443 23445555555555555555554322222
Q ss_pred CCCCEEEccCCCCC
Q psy3785 121 TSLLVLNISNNKIE 134 (184)
Q Consensus 121 ~~L~~l~l~~n~l~ 134 (184)
..|+.|++.+|.+.
T Consensus 103 ~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 103 LSLQELVLSGNPLH 116 (347)
T ss_dssp CCCCEEECCSSCCC
T ss_pred CCceEEEeeCCCcc
Confidence 22555555555544
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.31 E-value=3.7e-13 Score=107.35 Aligned_cols=37 Identities=14% Similarity=0.165 Sum_probs=17.1
Q ss_pred CCCEEEccCCCCCC-----cchhhhcCCCCCEEeccCCCCCC
Q psy3785 122 SLLVLNISNNKIES-----LPENIGYMKSLTHIDASHNTISY 158 (184)
Q Consensus 122 ~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~L~~n~l~~ 158 (184)
.|+.+++++|.++. ++..+..+++|+.+++++|.++.
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence 44444444444442 22333444555555555555544
No 136
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=2.3e-12 Score=100.79 Aligned_cols=133 Identities=18% Similarity=0.164 Sum_probs=89.3
Q ss_pred ccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-----chhh-hCCCCCCEEEcccCcccc-----chhhhc
Q psy3785 27 ALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-----PDEI-RHLTNLNELALNNNQLEM-----INEAVY 95 (184)
Q Consensus 27 ~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-----p~~~-~~l~~L~~L~l~~n~l~~-----~~~~~~ 95 (184)
+.|+.|++++|.+.+..+......+++|+.|++++|.+++. ...+ ...++|++|++++|.++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 57788888888765433333333356778888888877752 2222 235678888888888763 334445
Q ss_pred CCCCceEEEcccccccc-----chhhhcCCCCCCEEEccCCCCCC-----cchhhhcCCCCCEEeccCCCCCCC
Q psy3785 96 DLPHLYKFNVSNNMIAK-----ISDNIGNLTSLLVLNISNNKIES-----LPENIGYMKSLTHIDASHNTISYV 159 (184)
Q Consensus 96 ~l~~l~~L~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~L~~n~l~~~ 159 (184)
..++|++|++++|.++. ++..+...+.|+.|++++|.++. +...+...+.|+.++|++|.|+..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 67778888888888763 24456667788888888888873 234455677888888888887763
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.22 E-value=2.7e-11 Score=92.99 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=81.1
Q ss_pred CCCCCEEEcccCccccchh-hhcCCCCceEEEccccccccch-hhhcCCCCCC-EEEccCCCCCCcc-hhhhcCCCCCEE
Q psy3785 74 LTNLNELALNNNQLEMINE-AVYDLPHLYKFNVSNNMIAKIS-DNIGNLTSLL-VLNISNNKIESLP-ENIGYMKSLTHI 149 (184)
Q Consensus 74 l~~L~~L~l~~n~l~~~~~-~~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L~-~l~l~~n~l~~l~-~~~~~~~~L~~l 149 (184)
+++|+.+++++|.++.+|. .|..+.+|+.+.+++| ++.++ ..|.+|..|+ .+.+.+ .++.++ ..+..+++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 6788999999888888874 4557889999999887 77775 4688888898 899888 777775 447788999999
Q ss_pred eccCCCCCCCcHHHhhhhhccccccc
Q psy3785 150 DASHNTISYVPWKLFSKFHQNRSSRF 175 (184)
Q Consensus 150 ~L~~n~l~~~~~~~~~~~~~l~~~~~ 175 (184)
+++.|.++.++...|..+++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 99999999988888888888876653
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=5.9e-11 Score=91.51 Aligned_cols=94 Identities=19% Similarity=0.146 Sum_probs=46.3
Q ss_pred ccccccCCCcCccccEEEeec-CCCCCCCCcccccCCCCccEEEecCCccccCc-hhhhCCCCCCEEEcccCccccchhh
Q psy3785 16 LVSLVGSASASALLYTYEISS-DTGSGESNMSQSEPVLKLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEMINEA 93 (184)
Q Consensus 16 ~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~~~ 93 (184)
+..+|. +..+++|+.|++++ |.+.. ..+..+..+++|+.|++++|.+++++ ..|..+++|+.|+|++|.++.+|..
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCE-ECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCC-cChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence 344444 55555555555553 44432 22344555555555555555555542 2345555555555555555555433
Q ss_pred hcCCCCceEEEccccccc
Q psy3785 94 VYDLPHLYKFNVSNNMIA 111 (184)
Q Consensus 94 ~~~l~~l~~L~l~~n~~~ 111 (184)
......|+.|++.+|.+.
T Consensus 99 ~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 99 TVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp TTCSCCCCEEECCSSCCC
T ss_pred HcccCCceEEEeeCCCcc
Confidence 332222555555555544
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.20 E-value=2.7e-12 Score=100.34 Aligned_cols=156 Identities=13% Similarity=0.096 Sum_probs=113.9
Q ss_pred CccccEEEeecCCCCCCC---CcccccC-CCCccEEEecCCcccc--CchhhhCCCCCCEEEcccCccccch-----hhh
Q psy3785 26 SALLYTYEISSDTGSGES---NMSQSEP-VLKLKVLNLQYNNLKG--LPDEIRHLTNLNELALNNNQLEMIN-----EAV 94 (184)
Q Consensus 26 ~~~l~~l~l~~~~~~~~~---~~~~~~~-l~~L~~L~l~~n~l~~--lp~~~~~l~~L~~L~l~~n~l~~~~-----~~~ 94 (184)
++.++.+++++|.+.... +...+.. .++|++|++++|.++. +..-...+++++.|++++|.++... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467899999999987422 2222332 3689999999999986 2222233568999999999998432 222
Q ss_pred -cCCCCceEEEcccccccc-----chhhhcCCCCCCEEEccCCCCCC-----cchhhhcCCCCCEEeccCCCCCCCcH-H
Q psy3785 95 -YDLPHLYKFNVSNNMIAK-----ISDNIGNLTSLLVLNISNNKIES-----LPENIGYMKSLTHIDASHNTISYVPW-K 162 (184)
Q Consensus 95 -~~l~~l~~L~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~L~~n~l~~~~~-~ 162 (184)
...++|++|++++|.++. ++..+..++.|+.|++++|.++. +...+...+.|+.++|++|.|+.... .
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 246789999999999974 34556788999999999999983 34556778899999999999987432 2
Q ss_pred Hh---hhhhccccccccccccc
Q psy3785 163 LF---SKFHQNRSSRFGCALIM 181 (184)
Q Consensus 163 ~~---~~~~~l~~~~~~~~~~~ 181 (184)
+. ...+.|+.+.++.|.+-
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 22 34477888888877653
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.17 E-value=5e-11 Score=91.46 Aligned_cols=149 Identities=13% Similarity=0.161 Sum_probs=99.2
Q ss_pred CccccEEEeecCCCCC-------------------CCCcccccC--------CCCccEEEecCCccccCch-hhhCCCCC
Q psy3785 26 SALLYTYEISSDTGSG-------------------ESNMSQSEP--------VLKLKVLNLQYNNLKGLPD-EIRHLTNL 77 (184)
Q Consensus 26 ~~~l~~l~l~~~~~~~-------------------~~~~~~~~~--------l~~L~~L~l~~n~l~~lp~-~~~~l~~L 77 (184)
+++|+.||+++|.+.. ...+..+.. +++|+.+.+.. .++.+++ .|..+++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 6778888888887661 011224445 77888888887 7777754 47778888
Q ss_pred CEEEcccCccccchhh-hc-------------------------------------------------------------
Q psy3785 78 NELALNNNQLEMINEA-VY------------------------------------------------------------- 95 (184)
Q Consensus 78 ~~L~l~~n~l~~~~~~-~~------------------------------------------------------------- 95 (184)
+.+++.+|.++.++.. |.
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 8888887765332211 11
Q ss_pred -----------------CCCCceEEEccccccccchh-hhcCCCCCCEEEccCCCCCCcchh-hhcCCCCC-EEeccCCC
Q psy3785 96 -----------------DLPHLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIESLPEN-IGYMKSLT-HIDASHNT 155 (184)
Q Consensus 96 -----------------~l~~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~-~l~L~~n~ 155 (184)
.+++|+.+++++|.++.+++ .|.+|..|+.+++.+| ++.++.. +..+++|+ .+.+.+ .
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~ 284 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S 284 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence 14567777777777777753 5777777888887776 6666543 66677787 777777 6
Q ss_pred CCCCcHHHhhhhhccccccccc
Q psy3785 156 ISYVPWKLFSKFHQNRSSRFGC 177 (184)
Q Consensus 156 l~~~~~~~~~~~~~l~~~~~~~ 177 (184)
++.++...|..+..|+.+.+..
T Consensus 285 l~~I~~~aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 285 VTAIEFGAFMGCDNLRYVLATG 306 (329)
T ss_dssp CCEECTTTTTTCTTEEEEEECS
T ss_pred ceEEchhhhhCCccCCEEEeCC
Confidence 7777777777777777666643
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.07 E-value=2.9e-11 Score=99.23 Aligned_cols=132 Identities=11% Similarity=0.045 Sum_probs=64.6
Q ss_pred CccccEEEeecCCCCCCCCcccccC-CCCccEEEec----CCccccCc------hhhhCCCCCCEEEcccCc--cc-cch
Q psy3785 26 SALLYTYEISSDTGSGESNMSQSEP-VLKLKVLNLQ----YNNLKGLP------DEIRHLTNLNELALNNNQ--LE-MIN 91 (184)
Q Consensus 26 ~~~l~~l~l~~~~~~~~~~~~~~~~-l~~L~~L~l~----~n~l~~lp------~~~~~l~~L~~L~l~~n~--l~-~~~ 91 (184)
+++|+.|+++.+.+.+ ..+..+.. +++|+.|+++ .+.+++.| ..+..+++|+.|++++|. ++ ...
T Consensus 377 ~~~L~~L~l~~~~l~~-~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 377 CQELEYMAVYVSDITN-ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp CTTCSEEEEEESCCCH-HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred CccCeEEEeecCCccH-HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 4445555554444433 11222222 4455555553 33444321 113445556666654332 33 111
Q ss_pred hhhc-CCCCceEEEcccccccc--chhhhcCCCCCCEEEccCCCCC--CcchhhhcCCCCCEEeccCCCCCC
Q psy3785 92 EAVY-DLPHLYKFNVSNNMIAK--ISDNIGNLTSLLVLNISNNKIE--SLPENIGYMKSLTHIDASHNTISY 158 (184)
Q Consensus 92 ~~~~-~l~~l~~L~l~~n~~~~--~~~~~~~~~~L~~l~l~~n~l~--~l~~~~~~~~~L~~l~L~~n~l~~ 158 (184)
..+. .+++|++|++++|.++. ++..+..+++|+.|++++|.++ .++.....+++|+.+++++|.++.
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 2222 35566666666666652 3344456666666666666655 233334556666666666666655
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.06 E-value=9.2e-11 Score=96.26 Aligned_cols=82 Identities=13% Similarity=0.086 Sum_probs=37.9
Q ss_pred cCccccEEEeecCCCCCCC---CcccccCCCCccEEEecCCcccc-----CchhhhCCCCCCEEEcccCccccchhhhcC
Q psy3785 25 ASALLYTYEISSDTGSGES---NMSQSEPVLKLKVLNLQYNNLKG-----LPDEIRHLTNLNELALNNNQLEMINEAVYD 96 (184)
Q Consensus 25 ~~~~l~~l~l~~~~~~~~~---~~~~~~~l~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 96 (184)
.+++|+.|++++|.+.+.. ++.....+++|+.|++++|.+++ ++..+..+++|++|++++|.+..++..+..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 3445555555555443211 22223334555555555555542 222334455555555555555544444444
Q ss_pred CCCceEEEcc
Q psy3785 97 LPHLYKFNVS 106 (184)
Q Consensus 97 l~~l~~L~l~ 106 (184)
+++|+.+.++
T Consensus 242 ~~~L~~L~l~ 251 (592)
T 3ogk_B 242 AANLEEFCGG 251 (592)
T ss_dssp CTTCCEEEEC
T ss_pred hhHHHhhccc
Confidence 4445554444
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.96 E-value=1.2e-09 Score=77.20 Aligned_cols=114 Identities=15% Similarity=0.175 Sum_probs=86.2
Q ss_pred cccccCCCCccEEEecCC-cccc-----CchhhhCCCCCCEEEcccCcccc-----chhhhcCCCCceEEEcccccccc-
Q psy3785 45 MSQSEPVLKLKVLNLQYN-NLKG-----LPDEIRHLTNLNELALNNNQLEM-----INEAVYDLPHLYKFNVSNNMIAK- 112 (184)
Q Consensus 45 ~~~~~~l~~L~~L~l~~n-~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~l~~l~~L~l~~n~~~~- 112 (184)
...+...+.|++|++++| .++. +...+...++|++|++++|.+.. +...+...++|++|++++|.++.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344556778888888888 7775 45556667888999999998872 33445556789999999998883
Q ss_pred ----chhhhcCCCCCCEEEc--cCCCCCC-----cchhhhcCCCCCEEeccCCCCCC
Q psy3785 113 ----ISDNIGNLTSLLVLNI--SNNKIES-----LPENIGYMKSLTHIDASHNTISY 158 (184)
Q Consensus 113 ----~~~~~~~~~~L~~l~l--~~n~l~~-----l~~~~~~~~~L~~l~L~~n~l~~ 158 (184)
+...+...+.|+.+++ ++|.+.. +...+...+.|+.+++++|.+..
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 3556777888999999 8898883 44556778899999999998764
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.93 E-value=2.1e-10 Score=94.10 Aligned_cols=41 Identities=17% Similarity=0.082 Sum_probs=18.1
Q ss_pred CccccEEEeecCC-CCCCCCcccccCCCCccEEEecCCcccc
Q psy3785 26 SALLYTYEISSDT-GSGESNMSQSEPVLKLKVLNLQYNNLKG 66 (184)
Q Consensus 26 ~~~l~~l~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 66 (184)
+++|+.|++++|. +....++.....+++|++|++++|.+++
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~ 170 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDD 170 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEEC
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCC
Confidence 4455555555552 2211123333344555555555555443
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.80 E-value=7e-10 Score=90.96 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=47.4
Q ss_pred CcCccccEEEeecCCCCCCC---CcccccCCCCccEEEecCCc--ccc--CchhhhCCCCCCEEEcccC-ccccchhhhc
Q psy3785 24 SASALLYTYEISSDTGSGES---NMSQSEPVLKLKVLNLQYNN--LKG--LPDEIRHLTNLNELALNNN-QLEMINEAVY 95 (184)
Q Consensus 24 ~~~~~l~~l~l~~~~~~~~~---~~~~~~~l~~L~~L~l~~n~--l~~--lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~ 95 (184)
..+++|+.|++++|.+.+.. ++.....+++|+.|++++|. ++. ++.-+..+++|++|++++| .++.++..+.
T Consensus 153 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~ 232 (594)
T 2p1m_B 153 ATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ 232 (594)
T ss_dssp HHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH
T ss_pred HhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh
Confidence 46788888888888755422 23333356688888888876 221 2222344677888888777 3334444344
Q ss_pred CCCCceEEE
Q psy3785 96 DLPHLYKFN 104 (184)
Q Consensus 96 ~l~~l~~L~ 104 (184)
.+++|+.+.
T Consensus 233 ~~~~L~~L~ 241 (594)
T 2p1m_B 233 RAPQLEELG 241 (594)
T ss_dssp HCTTCSEEE
T ss_pred cCCcceEcc
Confidence 444455544
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.77 E-value=2.9e-09 Score=75.23 Aligned_cols=114 Identities=11% Similarity=0.102 Sum_probs=91.2
Q ss_pred cCCCcCccccEEEeecC-CCCCC---CCcccccCCCCccEEEecCCcccc-----CchhhhCCCCCCEEEcccCcccc--
Q psy3785 21 GSASASALLYTYEISSD-TGSGE---SNMSQSEPVLKLKVLNLQYNNLKG-----LPDEIRHLTNLNELALNNNQLEM-- 89 (184)
Q Consensus 21 ~~~~~~~~l~~l~l~~~-~~~~~---~~~~~~~~l~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-- 89 (184)
..+...+.|+.|++++| .+... .+...+...++|++|++++|.+++ +...+...++|++|++++|.++.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34457889999999999 76642 245566777899999999999985 45666777899999999999983
Q ss_pred ---chhhhcCCCCceEEEc--ccccccc-----chhhhcCCCCCCEEEccCCCCC
Q psy3785 90 ---INEAVYDLPHLYKFNV--SNNMIAK-----ISDNIGNLTSLLVLNISNNKIE 134 (184)
Q Consensus 90 ---~~~~~~~l~~l~~L~l--~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l~ 134 (184)
+...+....+|++|++ ++|.++. +...+...+.|+.+++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4456667789999999 8899983 3456677789999999999876
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.72 E-value=6.1e-08 Score=76.41 Aligned_cols=57 Identities=7% Similarity=0.021 Sum_probs=24.6
Q ss_pred hhcCCCCCCEEEccCCCCC-----Ccch-hhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccc
Q psy3785 116 NIGNLTSLLVLNISNNKIE-----SLPE-NIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSS 173 (184)
Q Consensus 116 ~~~~~~~L~~l~l~~n~l~-----~l~~-~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~ 173 (184)
.|.+|+.|+.+.+.++.+. .++. .+..+++|+.+.+. +.++.++...|..+..|+.+
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l 328 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQL 328 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEE
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEE
Confidence 3445555555555444332 2221 23344444444444 22444444444444444433
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.66 E-value=3.5e-08 Score=76.75 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=28.1
Q ss_pred CCCceEEEcccccccc-chhh---hcCCCCCCEEEccCCCCCC-----cchhhhcCCCCCEEeccCCCCC
Q psy3785 97 LPHLYKFNVSNNMIAK-ISDN---IGNLTSLLVLNISNNKIES-----LPENIGYMKSLTHIDASHNTIS 157 (184)
Q Consensus 97 l~~l~~L~l~~n~~~~-~~~~---~~~~~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~L~~n~l~ 157 (184)
+++|+.|++.+|.++. .+.. ...+++|+.|+++.|.++. ++..+..+++|+.++++.|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 4555555555555441 1111 1234555555555555542 1222334455555555555544
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.64 E-value=6.9e-08 Score=75.10 Aligned_cols=162 Identities=15% Similarity=0.100 Sum_probs=108.3
Q ss_pred cccccCCCcCccccEEEeecCCCCC--------CCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccc
Q psy3785 17 VSLVGSASASALLYTYEISSDTGSG--------ESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLE 88 (184)
Q Consensus 17 ~~~~~~~~~~~~l~~l~l~~~~~~~--------~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~ 88 (184)
..+..+...+++|+.|.+.+..... ..+...+..+|+|+.|.+.++.-..++. + .+++|+.|.+..+.++
T Consensus 129 ~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~ 206 (362)
T 2ra8_A 129 DGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLP 206 (362)
T ss_dssp HHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCC
T ss_pred HHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCC
Confidence 3455666678899999997654311 1345556778999999999884223443 3 3789999999998876
Q ss_pred cch-hhhc--CCCCceEEEccc--cc------cccchhhh--cCCCCCCEEEccCCCCCC-cchhh---hcCCCCCEEec
Q psy3785 89 MIN-EAVY--DLPHLYKFNVSN--NM------IAKISDNI--GNLTSLLVLNISNNKIES-LPENI---GYMKSLTHIDA 151 (184)
Q Consensus 89 ~~~-~~~~--~l~~l~~L~l~~--n~------~~~~~~~~--~~~~~L~~l~l~~n~l~~-l~~~~---~~~~~L~~l~L 151 (184)
.-. ..+. .+++|+.|.++. +. +..+...+ ..+++|+.|++.+|.+.. .+..+ ..++.|+.|+|
T Consensus 207 ~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdL 286 (362)
T 2ra8_A 207 DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI 286 (362)
T ss_dssp HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEEC
T ss_pred hHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEEC
Confidence 321 2332 689999999853 11 22222222 357999999999998872 33333 24778999999
Q ss_pred cCCCCCCC-cHHHh---hhhhcccccccccccc
Q psy3785 152 SHNTISYV-PWKLF---SKFHQNRSSRFGCALI 180 (184)
Q Consensus 152 ~~n~l~~~-~~~~~---~~~~~l~~~~~~~~~~ 180 (184)
+.|.++.. ...+. ..++.|+.+.++++.+
T Consensus 287 s~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 287 SAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp CSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 99998872 23333 3457778777776655
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.63 E-value=2.7e-07 Score=72.71 Aligned_cols=127 Identities=13% Similarity=0.191 Sum_probs=73.8
Q ss_pred ccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccch-hhhcCCCCceEEEccccccccchh-hhcCCCCC
Q psy3785 46 SQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNMIAKISD-NIGNLTSL 123 (184)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l~~L~l~~n~~~~~~~-~~~~~~~L 123 (184)
..+..+.+|+.+++..|.++.++........|+.+.+..+ ++.++ ..|..+.+|+.+.+..+ ++.++. .|.+ ..|
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L 250 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGI 250 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCC
T ss_pred HHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCc
Confidence 3455555666666666655555444333455666666532 45554 33335556666666553 444432 3333 456
Q ss_pred CEEEccCCCCCCcch-hhhcCCCCCEEeccCCCCC-----CCcHHHhhhhhcccccccc
Q psy3785 124 LVLNISNNKIESLPE-NIGYMKSLTHIDASHNTIS-----YVPWKLFSKFHQNRSSRFG 176 (184)
Q Consensus 124 ~~l~l~~n~l~~l~~-~~~~~~~L~~l~L~~n~l~-----~~~~~~~~~~~~l~~~~~~ 176 (184)
+.+.+ .+.++.++. .+..+++|+.+.+.+|.+. .++...|..+.+|+.+.+.
T Consensus 251 ~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 251 TTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp SEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred cEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 66666 344555543 4667888888888887765 4777788877777766554
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.25 E-value=1e-06 Score=65.62 Aligned_cols=64 Identities=27% Similarity=0.427 Sum_probs=45.2
Q ss_pred CCCCceEEEccccccccc---hhhhcCCCCCCEEEccCCCCCCcchhhhcCC--CCCEEeccCCCCCC-Cc
Q psy3785 96 DLPHLYKFNVSNNMIAKI---SDNIGNLTSLLVLNISNNKIESLPENIGYMK--SLTHIDASHNTISY-VP 160 (184)
Q Consensus 96 ~l~~l~~L~l~~n~~~~~---~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~--~L~~l~L~~n~l~~-~~ 160 (184)
.+++|+.|++++|.++.+ +..+..++.|+.|+|++|.++.+.. +..++ .|+.++|++|++++ +|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhhcccCCcceEEccCCcCccccC
Confidence 467788888888887754 3455677888888888888886632 33333 78888888888876 54
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.13 E-value=3.9e-06 Score=62.49 Aligned_cols=93 Identities=23% Similarity=0.284 Sum_probs=65.2
Q ss_pred EEecCCccccCch----hhhCCCCCCEEEcccCccccch---hhhcCCCCceEEEccccccccch--hhhcCCCCCCEEE
Q psy3785 57 LNLQYNNLKGLPD----EIRHLTNLNELALNNNQLEMIN---EAVYDLPHLYKFNVSNNMIAKIS--DNIGNLTSLLVLN 127 (184)
Q Consensus 57 L~l~~n~l~~lp~----~~~~l~~L~~L~l~~n~l~~~~---~~~~~l~~l~~L~l~~n~~~~~~--~~~~~~~~L~~l~ 127 (184)
++++.|....++. ...++++|++|+|++|+++.++ ..+..+++|+.|++++|.++.+. ..+..+ .|+.|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence 4555664333221 2255788999999999988654 44557889999999999988652 234444 899999
Q ss_pred ccCCCCC-Ccc-------hhhhcCCCCCEEe
Q psy3785 128 ISNNKIE-SLP-------ENIGYMKSLTHID 150 (184)
Q Consensus 128 l~~n~l~-~l~-------~~~~~~~~L~~l~ 150 (184)
+.+|.+. .+| ..+..+|+|+.||
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 9999987 343 2367788888886
No 153
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.10 E-value=8e-06 Score=57.94 Aligned_cols=111 Identities=17% Similarity=0.227 Sum_probs=78.3
Q ss_pred cccCCCCccEEEecCC-cccc-----CchhhhCCCCCCEEEcccCcccc-----chhhhcCCCCceEEEcccccccc---
Q psy3785 47 QSEPVLKLKVLNLQYN-NLKG-----LPDEIRHLTNLNELALNNNQLEM-----INEAVYDLPHLYKFNVSNNMIAK--- 112 (184)
Q Consensus 47 ~~~~l~~L~~L~l~~n-~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~l~~l~~L~l~~n~~~~--- 112 (184)
.+..-+.|++|+++++ .+.. +.+.+..-++|+.|+|++|.+.. +...+..-..|+.|++++|.|+.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3445577888888875 7764 45556667788999999888872 33444455688999999998882
Q ss_pred --chhhhcCCCCCCEEEccCCC---CC-----CcchhhhcCCCCCEEeccCCCCC
Q psy3785 113 --ISDNIGNLTSLLVLNISNNK---IE-----SLPENIGYMKSLTHIDASHNTIS 157 (184)
Q Consensus 113 --~~~~~~~~~~L~~l~l~~n~---l~-----~l~~~~~~~~~L~~l~L~~n~l~ 157 (184)
+.+.+..-..|+.|+++++. +. .+...+...+.|..++++.|.+.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 34566777789999998653 33 23445677888999998876544
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.92 E-value=2.3e-05 Score=54.59 Aligned_cols=83 Identities=12% Similarity=0.182 Sum_probs=47.2
Q ss_pred CCccEEEecCCccccC-chhhhCCCCCCEEEcccCc-cccch-hhhcCC----CCceEEEccccc-cccc-hhhhcCCCC
Q psy3785 52 LKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQ-LEMIN-EAVYDL----PHLYKFNVSNNM-IAKI-SDNIGNLTS 122 (184)
Q Consensus 52 ~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~l----~~l~~L~l~~n~-~~~~-~~~~~~~~~ 122 (184)
..|+.|++++|.++.. -..+..+++|+.|++++|. ++... ..+..+ ++|++|++++|. ++.- -..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4566666666666542 1334556667777777763 55221 223332 357777777764 6632 134556777
Q ss_pred CCEEEccCCC-CC
Q psy3785 123 LLVLNISNNK-IE 134 (184)
Q Consensus 123 L~~l~l~~n~-l~ 134 (184)
|+.|+++++. ++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 7777777763 44
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.83 E-value=4.7e-05 Score=52.99 Aligned_cols=82 Identities=9% Similarity=0.025 Sum_probs=43.8
Q ss_pred ccccEEEeecCCCCCCCCcccccCCCCccEEEecCCc-cccC-chhhhCC----CCCCEEEcccCc-cccch-hhhcCCC
Q psy3785 27 ALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNN-LKGL-PDEIRHL----TNLNELALNNNQ-LEMIN-EAVYDLP 98 (184)
Q Consensus 27 ~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l-p~~~~~l----~~L~~L~l~~n~-l~~~~-~~~~~l~ 98 (184)
..|+.+|++++.+++..+ ..+..+++|+.|++++|. +++- -..+..+ ++|+.|++++|. ++.-. ..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 356666666666554332 334556666666666663 5541 1223332 246666666663 55221 2334566
Q ss_pred CceEEEccccc
Q psy3785 99 HLYKFNVSNNM 109 (184)
Q Consensus 99 ~l~~L~l~~n~ 109 (184)
+|++|+++++.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 66666666663
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.78 E-value=1.4e-05 Score=56.66 Aligned_cols=110 Identities=18% Similarity=0.181 Sum_probs=82.7
Q ss_pred CcCccccEEEeecC-CCCCC---CCcccccCCCCccEEEecCCcccc-----CchhhhCCCCCCEEEcccCcccc-----
Q psy3785 24 SASALLYTYEISSD-TGSGE---SNMSQSEPVLKLKVLNLQYNNLKG-----LPDEIRHLTNLNELALNNNQLEM----- 89 (184)
Q Consensus 24 ~~~~~l~~l~l~~~-~~~~~---~~~~~~~~l~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~~----- 89 (184)
..-+.|+.|+++++ .+.+. .+...+.....|+.|++++|.+++ +.+.+..-++|++|+|++|.|..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 45678999999986 55431 245667778899999999999995 45666777899999999999982
Q ss_pred chhhhcCCCCceEEEcccc---ccc-----cchhhhcCCCCCCEEEccCCCC
Q psy3785 90 INEAVYDLPHLYKFNVSNN---MIA-----KISDNIGNLTSLLVLNISNNKI 133 (184)
Q Consensus 90 ~~~~~~~l~~l~~L~l~~n---~~~-----~~~~~~~~~~~L~~l~l~~n~l 133 (184)
+...+..-..|+.|+++++ .+. .+...+..-++|+.+++..|.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3345555667999999865 444 2344566778999999987654
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.74 E-value=0.00019 Score=55.56 Aligned_cols=141 Identities=13% Similarity=0.132 Sum_probs=86.3
Q ss_pred cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCc-hhhhCCCCCCEEEcccCccccch-hhhcCCCCceE
Q psy3785 25 ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYK 102 (184)
Q Consensus 25 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l~~ 102 (184)
....++.+.+..+-.. .....+..+..|+.+.+..+ ++.+. ..+..+..++.+.+..+ ++.++ ..+..+.+|+.
T Consensus 215 ~~~~l~~i~~~~~~~~--i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 215 YGKNLKKITITSGVTT--LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TCSSCSEEECCTTCCE--ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred cccccceeeeccceeE--EccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 3444555554433211 22334555677777777654 45553 34666777888877543 55555 34456778888
Q ss_pred EEccccccccch-hhhcCCCCCCEEEccCCCCCCcch-hhhcCCCCCEEeccCCCCCCCcHHHhhhhhccc
Q psy3785 103 FNVSNNMIAKIS-DNIGNLTSLLVLNISNNKIESLPE-NIGYMKSLTHIDASHNTISYVPWKLFSKFHQNR 171 (184)
Q Consensus 103 L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~ 171 (184)
+.+.++.++.++ ..|.+|..|+.+.+..+ ++.+.. .+..+.+|+.+.+..+ ++.+....|..+..++
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~~ 359 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSITK 359 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCCC
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCCc
Confidence 888877777774 46778888888888644 666654 3566778887777544 5556666665554433
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.60 E-value=0.00026 Score=55.26 Aligned_cols=104 Identities=13% Similarity=0.257 Sum_probs=60.2
Q ss_pred cccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCccccchh-hhcCCCCceEEEccccccccch-hhhcCCCCC
Q psy3785 47 QSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINE-AVYDLPHLYKFNVSNNMIAKIS-DNIGNLTSL 123 (184)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L 123 (184)
.+..+..|+.+.+..+.. .+ ...+.++..|+.+.+. +.++.++. .|..+.+|+.+.+.++ ++.+. ..|.+|..|
T Consensus 260 aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 455566666666654432 23 2335566667777664 34555553 3445667777777653 55553 356667777
Q ss_pred CEEEccCCCCCCcch-hhhcCCCCCEEeccCC
Q psy3785 124 LVLNISNNKIESLPE-NIGYMKSLTHIDASHN 154 (184)
Q Consensus 124 ~~l~l~~n~l~~l~~-~~~~~~~L~~l~L~~n 154 (184)
+.+.+..+ ++.+.. .+..+++|+.+.+.++
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 77777543 555543 3556677777776665
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.47 E-value=0.0016 Score=50.70 Aligned_cols=122 Identities=13% Similarity=0.179 Sum_probs=63.4
Q ss_pred ccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccch-hhhcCCCCceEEEccccccccch-hhhcCCCCCCE
Q psy3785 48 SEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNMIAKIS-DNIGNLTSLLV 125 (184)
Q Consensus 48 ~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L~~ 125 (184)
+..+..++.+.+..+...--...+.....++.+...... ++ ..+..+.+|+.+.+..+ ++.++ ..|.+|..|+.
T Consensus 249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~ 324 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS 324 (394)
T ss_dssp TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred ccccccceeEEcCCCcceeeccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCE
Confidence 334455555555444221112223444444444443332 22 22334566666666543 44453 34666677777
Q ss_pred EEccCCCCCCcch-hhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccc
Q psy3785 126 LNISNNKIESLPE-NIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRF 175 (184)
Q Consensus 126 l~l~~n~l~~l~~-~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~ 175 (184)
+++..+ ++.+.. .+..+.+|+.+.+..+ ++.++...|..+.+|+.+.+
T Consensus 325 i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 325 IDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp ECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred EEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence 776533 555543 3556677777777655 66666666666666665444
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.42 E-value=0.0017 Score=50.19 Aligned_cols=126 Identities=13% Similarity=0.141 Sum_probs=91.8
Q ss_pred cccCCCCccEEEecCCccccCc-hhhhCCCCCCEEEcccCccccch-hhhcCCCCceEEEccccccccch-hhhcCCCCC
Q psy3785 47 QSEPVLKLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNMIAKIS-DNIGNLTSL 123 (184)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L 123 (184)
.+.....++.+.+..+ +..++ ..+..+..|+.+.+..+ ++.++ ..+..+.+++.+.+..+ ++.++ ..+.+|..|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3344556766666544 33333 44677788999988765 66665 44556788999988654 55564 468899999
Q ss_pred CEEEccCCCCCCcch-hhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccc
Q psy3785 124 LVLNISNNKIESLPE-NIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFG 176 (184)
Q Consensus 124 ~~l~l~~n~l~~l~~-~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~ 176 (184)
+.+.+.++.++.++. .+..+.+|+.+.+..+ ++.+....|..+.+|+.+.+.
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 999999998988865 4778899999999654 777888888888888766653
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.38 E-value=0.0015 Score=50.99 Aligned_cols=124 Identities=15% Similarity=0.106 Sum_probs=87.6
Q ss_pred CcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccch-hhhcCCCCceE
Q psy3785 24 SASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYK 102 (184)
Q Consensus 24 ~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l~~ 102 (184)
.....++.+.+..+... .....+..+..++.+......+.. ..+..+.+|+.+.+..+ ++.++ ..+..+.+|+.
T Consensus 250 ~~~~~l~~~~~~~~~~~--i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~ 324 (394)
T 4fs7_A 250 YGCTDLESISIQNNKLR--IGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS 324 (394)
T ss_dssp TTCSSCCEEEECCTTCE--ECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred cccccceeEEcCCCcce--eeccccccccccceeccCceeecc--ccccccccccccccccc-cceechhhhcCCCCCCE
Confidence 34556666666554432 234456667788888776655433 34677889999998765 66776 44557889999
Q ss_pred EEccccccccch-hhhcCCCCCCEEEccCCCCCCcch-hhhcCCCCCEEeccCC
Q psy3785 103 FNVSNNMIAKIS-DNIGNLTSLLVLNISNNKIESLPE-NIGYMKSLTHIDASHN 154 (184)
Q Consensus 103 L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~L~~n 154 (184)
+.+..+ ++.++ .+|.+|..|+.+.+..+ ++.+.. .+..+++|+.+.+..+
T Consensus 325 i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 325 IDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 999754 77774 57889999999999776 777754 4778899999988654
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.22 E-value=0.0035 Score=48.81 Aligned_cols=106 Identities=15% Similarity=0.252 Sum_probs=74.6
Q ss_pred hhhhCCCCCCEEEcccCccccch-hhhcCCCCceEEEccccccccch-hhhcCCCCCCEEEccCCCCCCcch-hhhcCCC
Q psy3785 69 DEIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNMIAKIS-DNIGNLTSLLVLNISNNKIESLPE-NIGYMKS 145 (184)
Q Consensus 69 ~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~ 145 (184)
..|..+..|+.+.+..+.. .++ ..+..+..|+.+.+. +.++.++ ..|.+|..|+.+.+..+ ++.+.. .+..+.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 3466777888888876543 343 445567888888886 3466664 46778888888888754 666654 3667888
Q ss_pred CCEEeccCCCCCCCcHHHhhhhhcccccccccc
Q psy3785 146 LTHIDASHNTISYVPWKLFSKFHQNRSSRFGCA 178 (184)
Q Consensus 146 L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~ 178 (184)
|+.+.+-.+ ++.+....|..+.+|+.+.+..+
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 888888544 77788888888888877666543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.07 E-value=0.00087 Score=44.18 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=13.7
Q ss_pred CCEEEcccCccccchhh-hcCCCCceEEEcccccc
Q psy3785 77 LNELALNNNQLEMINEA-VYDLPHLYKFNVSNNMI 110 (184)
Q Consensus 77 L~~L~l~~n~l~~~~~~-~~~l~~l~~L~l~~n~~ 110 (184)
++.|+|++|+++.+|.. +..+++|+.+++.+|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444444322 22334444444444433
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.76 E-value=0.0023 Score=42.10 Aligned_cols=55 Identities=11% Similarity=0.123 Sum_probs=41.6
Q ss_pred CEEEcccCccc--cchhhhcCCCCceEEEccccccccchh-hhcCCCCCCEEEccCCCCC
Q psy3785 78 NELALNNNQLE--MINEAVYDLPHLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIE 134 (184)
Q Consensus 78 ~~L~l~~n~l~--~~~~~~~~l~~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~ 134 (184)
..++.+++.++ .+|..+. .++++|++++|.++.++. .+..++.|+.++|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46777788877 7775432 368888999998888864 5677888888888888775
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=34.78 E-value=48 Score=20.04 Aligned_cols=12 Identities=25% Similarity=0.207 Sum_probs=5.7
Q ss_pred hcCCCCCCEEEc
Q psy3785 117 IGNLTSLLVLNI 128 (184)
Q Consensus 117 ~~~~~~L~~l~l 128 (184)
|.+|..|+.+.+
T Consensus 39 F~~C~~L~~i~~ 50 (100)
T 2lz0_A 39 FSGCTALEKLIL 50 (100)
T ss_dssp STTCTTCCCEEE
T ss_pred HhccCCccEEEE
Confidence 444444444444
Done!