RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3785
(184 letters)
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 63.1 bits (153), Expect = 5e-12
Identities = 41/108 (37%), Positives = 68/108 (62%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
LK L+L +N+L LP + +L+NLN L L+ N++ + + L L + ++SNN I +
Sbjct: 164 NLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE 223
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
+ ++ NL +L L +SNNK+E LPE+IG + +L +D S+N IS +
Sbjct: 224 LLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS 271
Score = 55.0 bits (132), Expect = 2e-09
Identities = 33/102 (32%), Positives = 60/102 (58%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
LK L+L N ++ LP +R+L NL L L+ N L + + + +L +L ++S N I+
Sbjct: 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISD 200
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN 154
+ I L++L L++SNN I L ++ +K+L+ ++ S+N
Sbjct: 201 LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN 242
Score = 50.0 bits (119), Expect = 1e-07
Identities = 45/145 (31%), Positives = 79/145 (54%), Gaps = 1/145 (0%)
Query: 13 SARLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIR 72
+ + SL GS + LL + + SN+S+ + L L+L NN+ +P I
Sbjct: 77 PSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIG 136
Query: 73 HLT-NLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNN 131
L NL EL L++N++E + + +LP+L ++S N ++ + + NL++L L++S N
Sbjct: 137 LLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN 196
Query: 132 KIESLPENIGYMKSLTHIDASHNTI 156
KI LP I + +L +D S+N+I
Sbjct: 197 KISDLPPEIELLSALEELDLSNNSI 221
Score = 29.9 bits (67), Expect = 0.68
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 52 LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
+ LNL N L LP + L +L+ L+ + +E + +L L +++ N +
Sbjct: 47 VNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLR 106
Query: 112 KISDNIGNLTSLLVLNISNNKIESLPENIGYMKS-LTHIDASHNTIS 157
+ LT+L L++ NN I +P IG +KS L +D S N I
Sbjct: 107 SNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE 153
Score = 28.4 bits (63), Expect = 2.5
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 2/130 (1%)
Query: 42 ESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLY 101
+S + L L L N L+ LP+ I +L+NL L L+NNQ+ I+ L +L
Sbjct: 222 IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGS-LTNLR 280
Query: 102 KFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPW 161
+ ++S N ++ I L LL+ + N + + L + + N + P
Sbjct: 281 ELDLSGNSLSNALPLI-ALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPE 339
Query: 162 KLFSKFHQNR 171
L N
Sbjct: 340 ALSILESLNN 349
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 44.8 bits (106), Expect = 7e-06
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 80 LALNNNQLE-MINEAVYDLPHLYKFNVSNNMI-AKISDNIGNLTSLLVLNISNNKIE-SL 136
L L+N L I + L HL N+S N I I ++G++TSL VL++S N S+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 137 PENIGYMKSLTHIDASHNTIS 157
PE++G + SL ++ + N++S
Sbjct: 483 PESLGQLTSLRILNLNGNSLS 503
Score = 36.7 bits (85), Expect = 0.005
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 54 LKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLE-MINEAVYDLP-HLYKFNVSNN 108
L+VL+L YN+ G P+ + LT+L L LN N L + A+ H FN ++N
Sbjct: 468 LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 40.2 bits (95), Expect = 2e-05
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNMI 110
LK L+L N L +PD + L NL L L+ N L I+ EA LP L ++S N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 39.4 bits (93), Expect = 5e-05
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 99 HLYKFNVSNNMIAKISDNI-GNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHN 154
+L ++SNN + I D L +L VL++S N + S+ + SL +D S N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58
Score = 32.5 bits (75), Expect = 0.016
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 76 NLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMIAKISDN-IGNLTSLLVLNISNNKI 133
NL L L+NN+L +I + LP+L ++S N + IS L SL L++S N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 30.6 bits (70), Expect = 0.064
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 122 SLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
+L L++SNN++ +P+ + +L +D S N ++ + + FS
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPS 49
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 42.9 bits (101), Expect = 4e-05
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 24/106 (22%)
Query: 54 LKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
LK + L YNNL G +P EI LT+LN L L V NN+
Sbjct: 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDL----------------------VYNNLTGP 251
Query: 113 ISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTIS 157
I ++GNL +L L + NK+ +P +I ++ L +D S N++S
Sbjct: 252 IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297
Score = 41.4 bits (97), Expect = 1e-04
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 57 LNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVYDLPHLYKFNVSNNMIA-KI 113
L L N L G +PDE+ L L L++NQL I + ++P L + ++S N ++ +I
Sbjct: 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563
Query: 114 SDNIGNLTSLLVLNISNNKIE-SLP 137
N+GN+ SL+ +NIS+N + SLP
Sbjct: 564 PKNLGNVESLVQVNISHNHLHGSLP 588
Score = 41.0 bits (96), Expect = 2e-04
Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 30/155 (19%)
Query: 28 LLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQ 86
L+Y +IS++ G N + + + L++L+L N G LPD L L L+ NQ
Sbjct: 429 LVYFLDISNNNLQGRINSRKWD-MPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQ 486
Query: 87 L-EMINEAVYDLPHLYKFNVSNNMIA-KISDNIGNLTSLLVLNISNNKIE---------- 134
+ + L L + +S N ++ +I D + + L+ L++S+N++
Sbjct: 487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546
Query: 135 ---------------SLPENIGYMKSLTHIDASHN 154
+P+N+G ++SL ++ SHN
Sbjct: 547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581
Score = 40.6 bits (95), Expect = 2e-04
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 31/133 (23%)
Query: 54 LKVLNLQYNNLKG-LPDEIRHLT-NLNELALNNNQLE-MINEAVYDLPHLYKFNVSNNMI 110
++ +NL N L G +PD+I + +L L L+NN I +P+L ++SNNM+
Sbjct: 95 IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG--SIPNLETLDLSNNML 152
Query: 111 A-------------------------KISDNIGNLTSLLVLNISNNK-IESLPENIGYMK 144
+ KI +++ NLTSL L +++N+ + +P +G MK
Sbjct: 153 SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK 212
Query: 145 SLTHIDASHNTIS 157
SL I +N +S
Sbjct: 213 SLKWIYLGYNNLS 225
Score = 38.7 bits (90), Expect = 0.001
Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 53 KLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVYDLPHLYKFNV-SNNM 109
L+ L L N L G +P I L L L L++N L I E V L +L ++ SNN
Sbjct: 261 NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320
Query: 110 IAKISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTIS 157
KI + +L L VL + +NK +P+N+G +LT +D S N ++
Sbjct: 321 TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369
Score = 37.1 bits (86), Expect = 0.003
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 27/131 (20%)
Query: 54 LKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVYDLPHLY---------- 101
L+ + LQ N+ G LP E L + L ++NN L+ IN +D+P L
Sbjct: 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465
Query: 102 -------------KFNVSNNMIAK-ISDNIGNLTSLLVLNISNNKIES-LPENIGYMKSL 146
++S N + + +G+L+ L+ L +S NK+ +P+ + K L
Sbjct: 466 GGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL 525
Query: 147 THIDASHNTIS 157
+D SHN +S
Sbjct: 526 VSLDLSHNQLS 536
Score = 34.8 bits (80), Expect = 0.021
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 90 INEAVYDLPHLYKFNVSNNMIA-KISDNIGNLT-SLLVLNISNNKIE-SLPENIGYMKSL 146
I+ A++ LP++ N+SNN ++ I D+I + SL LN+SNN S+P G + +L
Sbjct: 85 ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNL 142
Query: 147 THIDASHNTIS 157
+D S+N +S
Sbjct: 143 ETLDLSNNMLS 153
Score = 34.1 bits (78), Expect = 0.040
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 30/141 (21%)
Query: 54 LKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE------------------------ 88
L VL+L NNL G +P+ + NL +L L +N LE
Sbjct: 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417
Query: 89 -MINEAVYDLPHLYKFNVS-NNMIAKISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKS 145
+ LP +Y ++S NN+ +I+ ++ SL +L+++ NK LP++ G K
Sbjct: 418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKR 476
Query: 146 LTHIDASHNTIS-YVPWKLFS 165
L ++D S N S VP KL S
Sbjct: 477 LENLDLSRNQFSGAVPRKLGS 497
Score = 33.3 bits (76), Expect = 0.061
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 53 KLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVYDLPHLYKFNV-SNNM 109
KL L+L N+L G +P+ + L NL L L +N I A+ LP L + SN
Sbjct: 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344
Query: 110 IAKISDNIGNLTSLLVLNISNNKIES-LPENI 140
+I N+G +L VL++S N + +PE +
Sbjct: 345 SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 42.3 bits (100), Expect = 4e-05
Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 21/127 (16%)
Query: 53 KLKVLNLQYNNLKG-----LPDEIRHLTNLNELALNNNQLEMIN-----EAVYDLPHLYK 102
LK LNL N + L + ++ NL L LNNN L E + L L
Sbjct: 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEV 225
Query: 103 FNVSNNMI-----AKISD-NIGNLTSLLVLNISNNKIE-----SLPENIGYMKSLTHIDA 151
N+ +N + A ++ + SLL L++S N I L E + +SL +D
Sbjct: 226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDL 285
Query: 152 SHNTISY 158
N
Sbjct: 286 RGNKFGE 292
Score = 29.2 bits (66), Expect = 1.3
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 49 EPVLKLKVLNLQYNNL-----KGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKF 103
+L L+VL L+ N L K L +R +L EL L+ N+ I + L
Sbjct: 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK 79
Query: 104 NV 105
Sbjct: 80 GC 81
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 41.2 bits (96), Expect = 1e-04
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 8/113 (7%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
++ L L N LK LP+ ++ N+ L N+NQL I + D + + +S N I +
Sbjct: 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLPDT--IQEMELSINRITE 255
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFS 165
+ + + ++L L++ +NKI LPEN+ + L ++ N+I +P L S
Sbjct: 256 LPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPS 304
Score = 37.0 bits (85), Expect = 0.004
Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 10/122 (8%)
Query: 54 LKVLNLQYNNLKGLPDEIRHL-TNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
L+ L++ N+++ LP HL + + L + +N L + E + P L N +
Sbjct: 285 LRYLSVYDNSIRTLPA---HLPSGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTS 339
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRS 172
+ ++ L VL++S N+I LPE + ++T +D S N ++ +P L + ++
Sbjct: 340 LPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENLPAALQIMQA 395
Query: 173 SR 174
SR
Sbjct: 396 SR 397
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 34.8 bits (81), Expect = 0.001
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 98 PHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPE 138
+L ++SNN I + + NL +L L++S NKI L
Sbjct: 1 TNLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLSP 40
Score = 34.4 bits (80), Expect = 0.002
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINE 92
L+ L+L N + LP + +L NL L L+ N++ ++
Sbjct: 2 NLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLSP 40
Score = 31.7 bits (73), Expect = 0.020
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 121 TSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
T+L L++SNN+I LP + + +L +D S N I+
Sbjct: 1 TNLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKIT 36
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 29.2 bits (67), Expect = 0.11
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 120 LTSLLVLNISNNKIESLPENI 140
L +L L++SNN++ SLP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 24.2 bits (54), Expect = 5.4
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 53 KLKVLNLQYNNLKGLPDEI 71
L+ L+L N L LP
Sbjct: 3 NLRELDLSNNQLSSLPPGA 21
Score = 24.2 bits (54), Expect = 7.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 74 LTNLNELALNNNQLEMI 90
L NL EL L+NNQL +
Sbjct: 1 LPNLRELDLSNNQLSSL 17
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 29.2 bits (67), Expect = 0.11
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 120 LTSLLVLNISNNKIESLPENI 140
L +L L++SNN++ SLP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 24.2 bits (54), Expect = 5.4
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 53 KLKVLNLQYNNLKGLPDEI 71
L+ L+L N L LP
Sbjct: 3 NLRELDLSNNQLSSLPPGA 21
Score = 24.2 bits (54), Expect = 7.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 74 LTNLNELALNNNQLEMI 90
L NL EL L+NNQL +
Sbjct: 1 LPNLRELDLSNNQLSSL 17
>gnl|CDD|214639 smart00364, LRR_BAC, Leucine-rich repeats, bacterial type.
Length = 20
Score = 27.2 bits (62), Expect = 0.48
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 122 SLLVLNISNNKIESLPE 138
SL LN+SNN++ SLPE
Sbjct: 3 SLKELNVSNNQLTSLPE 19
Score = 25.3 bits (57), Expect = 2.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 54 LKVLNLQYNNLKGLPD 69
LK LN+ N L LP+
Sbjct: 4 LKELNVSNNQLTSLPE 19
>gnl|CDD|237560 PRK13922, PRK13922, rod shape-determining protein MreC;
Provisional.
Length = 276
Score = 29.6 bits (67), Expect = 0.85
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 60 QYNNLKGLPDEIRHLTN----LNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK-IS 114
+L L +E L L QLE N + +L +L + + A+ IS
Sbjct: 67 SLASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLKESLDYQFITARVIS 126
Query: 115 DNIGNLTSLLVLNI-SNNKIE 134
+ + + ++ SN+ ++
Sbjct: 127 RSPDPWSQQVTIDKGSNDGVK 147
>gnl|CDD|187861 cd09730, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Large proteins, some contain Zn-finger domain; signature
gene for I-A subtype; also known as TM1802 family.
Length = 579
Score = 29.6 bits (67), Expect = 1.1
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 51 VLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMI 110
VL K+LN+QY+ + P L LN L ++ ++ + V + YK N +
Sbjct: 492 VLVGKLLNIQYSKDENKP----FLNKLNGLKMDKKKVIRLLNEVSNKLEQYKIYGYNEEL 547
Query: 111 AKISDNIGNLTSLLVLNISNNK 132
L+ L I N K
Sbjct: 548 YSEMKE------LIDLEIGNWK 563
>gnl|CDD|235663 PRK05989, cobN, cobaltochelatase subunit CobN; Reviewed.
Length = 1244
Score = 28.7 bits (65), Expect = 2.0
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 3/20 (15%)
Query: 96 DLPHLYKFNVSN---NMIAK 112
DLPHLY F V++ AK
Sbjct: 579 DLPHLYPFIVNDPGEGTQAK 598
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
Length = 1153
Score = 28.7 bits (64), Expect = 2.1
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 67 LPDEIRHLTNLNELALNN-NQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLV 125
LP I++L L L + N LE + + +L L ++S + +I T++
Sbjct: 794 LPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS--TNISD 850
Query: 126 LNISNNKIESLPENIGYMKSLTHID 150
LN+S IE +P I +L+ +D
Sbjct: 851 LNLSRTGIEEVPWWIEKFSNLSFLD 875
>gnl|CDD|217077 pfam02514, CobN-Mg_chel, CobN/Magnesium Chelatase. This family
contains a domain common to the cobN protein and to
magnesium protoporphyrin chelatase. CobN is implicated
in the conversion of hydrogenobyrinic acid a,c-diamide
to cobyrinic acid. Magnesium protoporphyrin chelatase is
involved in chlorophyll biosynthesis.
Length = 1079
Score = 28.3 bits (64), Expect = 2.7
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 5/24 (20%)
Query: 93 AVYDLPHLYKFNVSNN----MIAK 112
+ DLPH+Y + V NN AK
Sbjct: 456 LIGDLPHIYPYIV-NNPGEGTQAK 478
>gnl|CDD|183114 PRK11388, PRK11388, DNA-binding transcriptional regulator DhaR;
Provisional.
Length = 638
Score = 27.3 bits (61), Expect = 5.9
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 6 NSGKMRDSARLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKL--KVLNLQYNN 63
+ G++ + L V SA+ L T I+ + G N+ ++ +L + LN
Sbjct: 153 SKGRLTGTIALACPVEQTSAADLPLTLSIAREVG----NLLLTDSLLAESNRHLNQLNAL 208
Query: 64 LKGLPD 69
L+ + D
Sbjct: 209 LESMDD 214
>gnl|CDD|201305 pfam00560, LRR_1, Leucine Rich Repeat. CAUTION: This Pfam may
not find all Leucine Rich Repeats in a protein. Leucine
Rich Repeats are short sequence motifs present in a
number of proteins with diverse functions and cellular
locations. These repeats are usually involved in
protein-protein interactions. Each Leucine Rich Repeat
is composed of a beta-alpha unit. These units form
elongated non-globular structures. Leucine Rich Repeats
are often flanked by cysteine rich domains.
Length = 22
Score = 24.1 bits (53), Expect = 6.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHL 74
L+ L+L NNL LP + +L
Sbjct: 1 NLEELDLSNNNLSSLPPSLGNL 22
Score = 23.7 bits (52), Expect = 8.4
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 122 SLLVLNISNNKIESLPENIGYM 143
+L L++SNN + SLP ++G +
Sbjct: 1 NLEELDLSNNNLSSLPPSLGNL 22
>gnl|CDD|218489 pfam05192, MutS_III, MutS domain III. This domain is found in
proteins of the MutS family (DNA mismatch repair
proteins) and is found associated with pfam00488,
pfam05188, pfam01624 and pfam05190. The MutS family of
proteins is named after the Salmonella typhimurium MutS
protein involved in mismatch repair; other members of
the family included the eukaryotic MSH 1,2,3, 4,5 and 6
proteins. These have various roles in DNA repair and
recombination. Human MSH has been implicated in
non-polyposis colorectal carcinoma (HNPCC) and is a
mismatch binding protein. The aligned region corresponds
with domain III, which is central to the structure of
Thermus aquaticus MutS as characterized in.
Length = 290
Score = 26.6 bits (59), Expect = 7.6
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 64 LKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIG 118
LKG+PD R L+ L + L + ++ LP L K S ++A ++D +
Sbjct: 73 LKGIPDLERLLSRLALGRASPRDLLALRSSLEALPALRKLLASAPLLADLADQLP 127
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.129 0.358
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,595,637
Number of extensions: 754571
Number of successful extensions: 613
Number of sequences better than 10.0: 1
Number of HSP's gapped: 568
Number of HSP's successfully gapped: 62
Length of query: 184
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 93
Effective length of database: 6,901,388
Effective search space: 641829084
Effective search space used: 641829084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.4 bits)