RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3785
(184 letters)
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 104 bits (261), Expect = 6e-29
Identities = 17/108 (15%), Positives = 38/108 (35%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+ L Y L L + L ++L +L + AV +LP K + +
Sbjct: 5 EKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTR 64
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
+ +G L L ++ L +G + + + + ++ +
Sbjct: 65 LKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELK 112
Score = 102 bits (257), Expect = 3e-28
Identities = 17/108 (15%), Positives = 38/108 (35%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+ L Y L L + L ++L +L + AV +LP K + +
Sbjct: 28 EKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTR 87
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
+ +G L L ++ L +G + + + + ++ +
Sbjct: 88 LKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQLK 135
Score = 102 bits (256), Expect = 4e-28
Identities = 17/108 (15%), Positives = 37/108 (34%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+ L Y L L + L ++L +L + AV +LP K + +
Sbjct: 51 EKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTE 110
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
+ +G L L ++ L +G + + + ++ +
Sbjct: 111 LKAAVGELPEKSKLQEIYQELTQLKAAVGELPDQSKQQQIYQELTDLK 158
Score = 86.0 bits (214), Expect = 8e-22
Identities = 15/92 (16%), Positives = 29/92 (31%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+ L Y L L + L ++L +L + AV +LP K + +
Sbjct: 74 EKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQ 133
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMK 144
+ +G L ++ L +
Sbjct: 134 LKAAVGELPDQSKQQQIYQELTDLKTAFERLG 165
Score = 62.5 bits (153), Expect = 6e-13
Identities = 8/65 (12%), Positives = 23/65 (35%)
Query: 96 DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNT 155
+LP K + ++ +G L L ++ L +G + + + +
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQE 61
Query: 156 ISYVP 160
++ +
Sbjct: 62 LTRLK 66
Score = 47.1 bits (113), Expect = 2e-07
Identities = 9/47 (19%), Positives = 16/47 (34%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPH 99
+ L Y L L + L + ++ +L + A L H
Sbjct: 120 EKSKLQEIYQELTQLKAAVGELPDQSKQQQIYQELTDLKTAFERLGH 166
Score = 47.1 bits (113), Expect = 3e-07
Identities = 5/43 (11%), Positives = 15/43 (34%)
Query: 118 GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
G L L ++ L +G + + + + ++ +
Sbjct: 1 GELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLK 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 90.0 bits (224), Expect = 4e-22
Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 10/119 (8%)
Query: 52 LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
L L+ L PD+ L++L + ++ L + + + L ++ N +
Sbjct: 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR 140
Query: 112 KISDNIGNLTSLLVLNIS-NNKIESLPENIG---------YMKSLTHIDASHNTISYVP 160
+ +I +L L L+I ++ LPE + + +L + I +P
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP 199
Score = 85.4 bits (212), Expect = 2e-20
Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 2/104 (1%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLT--NLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMI 110
++ LK D + T L L + L + + L HL + +
Sbjct: 57 NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL 116
Query: 111 AKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN 154
++ D + L L ++ N + +LP +I + L +
Sbjct: 117 MELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160
Score = 85.0 bits (211), Expect = 2e-20
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 10/112 (8%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELAL-NNNQLEMI---------NEAVYDLPHLYK 102
L+ L L N L+ LP I L L EL++ +L + + L +L
Sbjct: 128 GLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 103 FNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN 154
+ I + +I NL +L L I N+ + +L I ++ L +D
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239
Score = 84.6 bits (210), Expect = 4e-20
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 3/111 (2%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELAL-NNNQLEMINEAVYDLPHLYKFNVSN-NMI 110
LK L ++ + L L I HL L EL L L L + + + + +
Sbjct: 207 NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266
Query: 111 AKISDNIGNLTSLLVLNISNN-KIESLPENIGYMKSLTHIDASHNTISYVP 160
+ +I LT L L++ + LP I + + I + + +
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317
Score = 75.4 bits (186), Expect = 1e-16
Identities = 14/110 (12%), Positives = 33/110 (30%), Gaps = 2/110 (1%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDL--PHLYKFNVSNNMI 110
+ + N + N L+ + + D P + + +
Sbjct: 34 QWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL 93
Query: 111 AKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
+ D L+ L + I + LP+ + L + + N + +P
Sbjct: 94 PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALP 143
Score = 63.4 bits (155), Expect = 1e-12
Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 53 KLKVLNLQYNN-LKGLPDEIRHLTNLNELAL-NNNQLEMINEAVYDLPHLYKFNVSNN-M 109
KL+ L+L+ L+ P L L L + + L + ++ L L K ++
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289
Query: 110 IAKISDNIGNLTSLLVLNISNNKIESLPEN 139
++++ I L + ++ + + L ++
Sbjct: 290 LSRLPSLIAQLPANCIILVPPHLQAQLDQH 319
Score = 44.9 bits (107), Expect = 4e-06
Identities = 6/100 (6%), Positives = 25/100 (25%), Gaps = 6/100 (6%)
Query: 64 LKGLPDEIRHLTNLNELALNN-NQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTS 122
+ H + L L ++ + Y + + + N +
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW---HSAWRQANSNN 57
Query: 123 LLVLNISNNKIESLPENIGY--MKSLTHIDASHNTISYVP 160
+ + +++ + + ++ + P
Sbjct: 58 PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFP 97
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 82.8 bits (205), Expect = 2e-19
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 52 LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMI 110
LKL L + L G+P ++ LNEL L++N+++ I LY+ + +N I
Sbjct: 172 LKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFS 165
I + L +L L++ NNK+ +P + +K L + N I+ V F
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285
Score = 65.0 bits (159), Expect = 5e-13
Identities = 23/120 (19%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMI- 110
KL+ L + N+L +P + ++L EL +++N++ + + V L ++ + N +
Sbjct: 103 KLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160
Query: 111 -AKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
+ + L L IS K+ +P+++ ++L + HN I + + ++ +
Sbjct: 161 NSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSK 218
Score = 64.3 bits (157), Expect = 7e-13
Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 6/121 (4%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
L L L N + + ++ L L +L ++ N L I + L + + +N I
Sbjct: 79 HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIR 136
Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPENIGYMK--SLTHIDASHNTISYVPWKLFSKFH 168
K+ + L ++ + + N +E+ G L ++ S ++ +P L +
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLN 196
Query: 169 Q 169
+
Sbjct: 197 E 197
Score = 63.5 bits (155), Expect = 2e-12
Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 54 LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMIAK 112
L+V+ LK +P EI + L L NN + + + L HLY + NN I+K
Sbjct: 35 LRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92
Query: 113 ISDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
I + L L L IS N + +P N+ SL + N I VP +FS
Sbjct: 93 IHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRN 148
Score = 34.2 bits (79), Expect = 0.014
Identities = 10/66 (15%), Positives = 18/66 (27%), Gaps = 10/66 (15%)
Query: 53 KLKVLNLQYNNLKGLPDEI-------RHLTNLNELALNNNQLEMIN---EAVYDLPHLYK 102
L+V+ L NN+ + N ++L NN + +
Sbjct: 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324
Query: 103 FNVSNN 108
N
Sbjct: 325 IQFGNY 330
Score = 27.3 bits (61), Expect = 2.8
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 122 SLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
L V+ S+ ++++P+ I T +D +N IS + F
Sbjct: 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQH 79
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 83.8 bits (207), Expect = 2e-19
Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 23/131 (17%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLN-----------------ELALNNNQLEMINEAVY 95
L+ L++ N L LP L L EL ++ N+L +
Sbjct: 182 GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPV--- 238
Query: 96 DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNT 155
L + VS N + + L SL ++ N++ LPE++ ++ S T ++ N
Sbjct: 239 LPSELKELMVSGNRLTSLPMLPSGLLSL---SVYRNQLTRLPESLIHLSSETTVNLEGNP 295
Query: 156 ISYVPWKLFSK 166
+S + +
Sbjct: 296 LSERTLQALRE 306
Score = 78.4 bits (193), Expect = 2e-17
Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 20/122 (16%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDL--------------P 98
+L+ L + N L LP L L+ + L + + L P
Sbjct: 82 ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPP 141
Query: 99 HLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158
L + +VS+N +A + L L NN++ SLP L + S N ++
Sbjct: 142 GLQELSVSDNQLASLPALPSELCK---LWAYNNQLTSLPMLPS---GLQELSVSDNQLAS 195
Query: 159 VP 160
+P
Sbjct: 196 LP 197
Score = 74.5 bits (183), Expect = 3e-16
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 12/107 (11%)
Query: 54 LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
L+ L++ N L LP L L NNQL + L + +VS+N +A +
Sbjct: 143 LQELSVSDNQLASLPALPSELCKLW---AYNNQLTSLPM---LPSGLQELSVSDNQLASL 196
Query: 114 SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
L L NN++ SLP L + S N ++ +P
Sbjct: 197 PTLPSELYK---LWAYNNRLTSLPALPS---GLKELIVSGNRLTSLP 237
Score = 73.8 bits (181), Expect = 6e-16
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
L L + N L LP L L+ +++NQL + L K NN +
Sbjct: 122 GLCKLWIFGNQLTSLPVLPPGLQELS---VSDNQLASLPA---LPSELCKLWAYNNQLTS 175
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
+ L L ++S+N++ SLP L + A +N ++ +P
Sbjct: 176 LPMLPSGLQEL---SVSDNQLASLPTLPS---ELYKLWAYNNRLTSLP 217
Score = 73.0 bits (179), Expect = 1e-15
Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 12/108 (11%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+ L + NNL LP L L ++ NQL + L L F+
Sbjct: 62 HITTLVIPDNNLTSLPALPPELRTLE---VSGNQLTSLPVLPPGLLELSIFSNPLT---H 115
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
+ L L I N++ SLP L + S N ++ +P
Sbjct: 116 LPALPSGLCK---LWIFGNQLTSLPVLPP---GLQELSVSDNQLASLP 157
Score = 65.7 bits (160), Expect = 4e-13
Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 74 LTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKI 133
L + + L + + + H+ + +N + + L +L +S N++
Sbjct: 39 NNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLPALPPELRTL---EVSGNQL 93
Query: 134 ESLPENIGYMKSLTHIDASHNTISYVPWKL 163
SLP + L+ + +P L
Sbjct: 94 TSLPVLPPGLLELSIFSNPLTHLPALPSGL 123
Score = 57.2 bits (138), Expect = 3e-10
Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 28/120 (23%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+LK L + N L LP L +L+ + NQL LP
Sbjct: 242 ELKELMVSGNRLTSLPMLPSGLLSLS---VYRNQLT-------RLP-------------- 277
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRS 172
+++ +L+S +N+ N + ++ +T I S + R+
Sbjct: 278 --ESLIHLSSETTVNLEGNPLSERTLQA--LREITSAPGYSGPIIRFDMAGASAPRETRA 333
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 82.4 bits (204), Expect = 6e-19
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 11/125 (8%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIA 111
KL +L YN L+G L L L NQ+ I + + ++N +
Sbjct: 331 KLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK 390
Query: 112 KISDN--IGNLTSLLVLNISNNKIES--------LPENIGYMKSLTHIDASHNTISYVPW 161
I + +++ + ++ S N+I S L +++ I+ S+N IS P
Sbjct: 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450
Query: 162 KLFSK 166
+LFS
Sbjct: 451 ELFST 455
Score = 78.9 bits (195), Expect = 1e-17
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 53 KLKVLNLQYNNLKGL--PDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMI 110
K++++ + YNNLK ++ + L L NQLE A L N++ N I
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQI 365
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPEN--IGYMKSLTHIDASHNTISYVPWKLFSKF 167
+I N G + L+ ++NK++ +P + ++ ID S+N I V K F
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425
Score = 77.4 bits (191), Expect = 3e-17
Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 11/114 (9%)
Query: 52 LKLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQL--------EMINEAVYDLPHLYK 102
+ + +NL N + P E+ + L+ + L N L + NE + L
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS 492
Query: 103 FNVSNNMIAKISDNI--GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN 154
++ N + K+SD+ L L+ +++S N P +L +
Sbjct: 493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ 546
Score = 76.6 bits (189), Expect = 7e-17
Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 17/131 (12%)
Query: 53 KLKVLNLQYNNLKGLP--------DEIRHLTNLNELALNNNQLEMINE--AVYDLPHLYK 102
L +NL N L +P + ++ L + L N+L +++ LP+L
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVG 517
Query: 103 FNVSNNMIAKISDNIGNLTSLLVLNIS-------NNKIESLPENIGYMKSLTHIDASHNT 155
++S N +K N ++L I N + PE I SLT + N
Sbjct: 518 IDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577
Query: 156 ISYVPWKLFSK 166
I V K+
Sbjct: 578 IRKVNEKITPN 588
Score = 72.8 bits (179), Expect = 1e-15
Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 12/125 (9%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI--NEAVYDLPHLYKFNVSNNM 109
KL LNL YN + +P + L+ +N+L+ I + + + S N
Sbjct: 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE 413
Query: 110 IAKISDN--------IGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVP 160
I + ++ +N+SNN+I P+ + L+ I+ N ++ +P
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473
Query: 161 WKLFS 165
Sbjct: 474 KNSLK 478
Score = 72.8 bits (179), Expect = 1e-15
Identities = 16/126 (12%), Positives = 41/126 (32%), Gaps = 12/126 (9%)
Query: 53 KLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLEMINEAVYD---------LPHLYK 102
L + + LP ++ L + + + N+ + D +
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309
Query: 103 FNVSNNMIA--KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
+ N + + ++ + L +L N++E G L ++ ++N I+ +P
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIP 369
Query: 161 WKLFSK 166
Sbjct: 370 ANFCGF 375
Score = 68.5 bits (168), Expect = 4e-14
Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 18/115 (15%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
L ++L YN+ P + + + L + N + N + +
Sbjct: 514 YLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA----------------QGNRTLRE 557
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKF 167
+ I SL L I +N I + E I +++ +D N + +
Sbjct: 558 WPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPY 610
Score = 67.4 bits (165), Expect = 9e-14
Identities = 15/111 (13%), Positives = 33/111 (29%), Gaps = 6/111 (5%)
Query: 52 LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLE-MINEAVYDLPHLYKFNVSNNMI 110
LK + NN+ + + LT L + + N+ ++ +
Sbjct: 183 LKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-- 240
Query: 111 AKISDNIGNLTSLLVLNIS-NNKIESLPENIGYMKSLTHIDASHNTISYVP 160
NL L + + + LP + + + I+ + N
Sbjct: 241 --EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289
Score = 58.9 bits (143), Expect = 7e-11
Identities = 15/116 (12%), Positives = 30/116 (25%), Gaps = 13/116 (11%)
Query: 53 KLKVLNLQYNNLKG-----LPDEIRHLTNLNELALNNNQL------EMINEAVYDLPHLY 101
+L+VL L + K P I + + E DL
Sbjct: 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC 165
Query: 102 KFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
S+ I + + +N I + + + + L ++
Sbjct: 166 --INSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFV 219
Score = 47.0 bits (112), Expect = 1e-06
Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 57 LNLQYNNLKG-LPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKIS- 114
+ Q N P+ I +L +L + +N + +NE + P++ ++ +N I
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDL 604
Query: 115 DNIGNLTSLLVLNISNNKIESLP 137
+ + + +K + +
Sbjct: 605 SYVCPYIEAGMYMLFYDKTQDIR 627
Score = 36.9 bits (86), Expect = 0.002
Identities = 13/91 (14%), Positives = 27/91 (29%), Gaps = 6/91 (6%)
Query: 73 HLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA-KISDNIGNLTSLLVLNISNN 131
N N + ++ + ++ + ++ D IG LT L VL + ++
Sbjct: 56 PGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSH 115
Query: 132 KIE-----SLPENIGYMKSLTHIDASHNTIS 157
+ P+ I S
Sbjct: 116 GEKVNERLFGPKGISANMSDEQKQKMRMHYQ 146
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 80.5 bits (199), Expect = 2e-18
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIA 111
+L +L LQ+NNL + + L E+ L+ N+LE I + L + +SNN +
Sbjct: 227 ELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285
Query: 112 KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
++ + +L VL++S+N + + N L ++ HN+I +
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHT 340
Score = 79.7 bits (197), Expect = 4e-18
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
L ++L YN L+ + + L L ++NN+L +N +P L ++S+N +
Sbjct: 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL 308
Query: 112 KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158
+ N L L + +N I +L + +L ++ SHN
Sbjct: 309 HVERNQPQFDRLENLYLDHNSIVTLKLST--HHTLKNLTLSHNDWDC 353
Score = 76.6 bits (189), Expect = 5e-17
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVY-DLPHLYKFNVSNNMI 110
K++ + + ++ LP + + L LN+ Q+E I+ + + K + N I
Sbjct: 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 105
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFS 165
+ ++ N+ L VL + N + SLP I LT + S+N + + F
Sbjct: 106 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162
Score = 76.2 bits (188), Expect = 5e-17
Identities = 23/118 (19%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMI 110
++++LNL ++ + + + +L + N + + V ++P L + N +
Sbjct: 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
+ + I N L L++SNN +E + ++ SL ++ S N +++V L
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS 187
Score = 67.0 bits (164), Expect = 1e-13
Identities = 28/110 (25%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
KL L++ NNL+ + D+ + T+L L L++N+L ++ ++ +P L+ NVS N+++
Sbjct: 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL--IPSLFHANVSYNLLS 199
Query: 112 KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPW 161
++ ++ L+ S+N I + + LT + HN ++ W
Sbjct: 200 TLA----IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAW 243
Score = 64.7 bits (158), Expect = 7e-13
Identities = 19/113 (16%), Positives = 46/113 (40%), Gaps = 4/113 (3%)
Query: 57 LNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIAKISD 115
+++Q ++ ++I L N + N+ + + + + N+++ I +I
Sbjct: 28 IDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT 86
Query: 116 NI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
++ L + N I LP ++ + LT + N +S +P +F
Sbjct: 87 YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139
Score = 55.4 bits (134), Expect = 1e-09
Identities = 16/104 (15%), Positives = 39/104 (37%), Gaps = 8/104 (7%)
Query: 74 LTNLNELALNNNQLEMINEAVY------DLPHLYKFNVSNNMIAKISDNI-GNLTSLLVL 126
+ + ++M + VY L + N+ + K+ + + + +L
Sbjct: 15 SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 74
Query: 127 NISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
N+++ +IE + Y ++ + N I Y+P +F
Sbjct: 75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 80.8 bits (199), Expect = 2e-18
Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 10/118 (8%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
L+ +N N L LP+ L L+ + NNQL + E L +VS N++
Sbjct: 141 LLEYINADNNQLTMLPELPTSLEVLS---VRNNQLTFLPEL---PESLEALDVSTNLLES 194
Query: 113 ISDNIGNLTSL----LVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
+ + N+I +PENI + I N +S + S+
Sbjct: 195 LPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252
Score = 76.9 bits (189), Expect = 5e-17
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+ L L NL LPD + + L + N L + E L +L + +N ++
Sbjct: 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLPELPASLEYL---DACDNRLST 114
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKL 163
+ + +L L ++ NN++ LPE L +I+A +N ++ +P
Sbjct: 115 LPELPASLKHL---DVDNNQLTMLPELPA---LLEYINADNNQLTMLPELP 159
Score = 76.5 bits (188), Expect = 7e-17
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 13/112 (11%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
LK L++ N L LP+ L +N +NNQL M+ E L +V NN +
Sbjct: 121 SLKHLDVDNNQLTMLPELPALLEYIN---ADNNQLTMLPEL---PTSLEVLSVRNNQLTF 174
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLT----HIDASHNTISYVP 160
+ + +L L++S N +ESLP N I+++P
Sbjct: 175 LPELPESLE---ALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIP 223
Score = 73.9 bits (181), Expect = 7e-16
Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
K + N L E + +EL LN L + + + P + ++ N +
Sbjct: 38 KQALPGENRNEAVSLLKECL-INQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALIS 94
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
+ + +L L + +N++ +LPE SL H+D +N ++ +P
Sbjct: 95 LPELPASLEYL---DACDNRLSTLPELPA---SLKHLDVDNNQLTMLP 136
Score = 73.1 bits (179), Expect = 1e-15
Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 7/131 (5%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHL----YKFNVSNN 108
L+VL+++ N L LP+ L L+ ++ N LE + H F N
Sbjct: 161 SLEVLSVRNNQLTFLPELPESLEALD---VSTNLLESLPAVPVRNHHSEETEIFFRCREN 217
Query: 109 MIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFH 168
I I +NI +L + + +N + S ++ + + H
Sbjct: 218 RITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLH 277
Query: 169 QNRSSRFGCAL 179
+ +
Sbjct: 278 RPLADAVTAWF 288
Score = 63.1 bits (153), Expect = 3e-12
Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 8/107 (7%)
Query: 57 LNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD--LPHLYKFNVSNNMIAKI 113
N YN + G + + AL + + + + ++ ++ +
Sbjct: 15 QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSL 74
Query: 114 SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
DN+ + VL I+ N + SLPE SL ++DA N +S +P
Sbjct: 75 PDNLP--PQITVLEITQNALISLPELPA---SLEYLDACDNRLSTLP 116
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 80.7 bits (199), Expect = 2e-18
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 11/114 (9%)
Query: 52 LKLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVY--------DLPHLYK 102
+ + L YN ++ P E+ + ++ + L+NN + I E + L
Sbjct: 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732
Query: 103 FNVSNNMIAKISDNI--GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN 154
++ N + +SD+ L L +++S N S P L H
Sbjct: 733 IDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ 786
Score = 79.9 bits (197), Expect = 6e-18
Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 6/127 (4%)
Query: 53 KLKVLNLQYNNLKGLPDE--IRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMI 110
K+++ + YNNL+ P ++ + L L +N++ + EA L + N I
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL-EAFGTNVKLTDLKLDYNQI 607
Query: 111 AKISDNIG-NLTSLLVLNISNNKIESLPE--NIGYMKSLTHIDASHNTISYVPWKLFSKF 167
+I ++ + L S+NK++ +P N + + +D S+N I +
Sbjct: 608 EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667
Query: 168 HQNRSSR 174
+
Sbjct: 668 DDYKGIN 674
Score = 78.4 bits (193), Expect = 2e-17
Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 14/121 (11%)
Query: 53 KLKVLNLQYNNLKG----------LPDEIRHLTNLNELALNNNQLEMI--NEAVYDLPHL 100
+L+ LN+ N L D+ + + N LE + ++ + L
Sbjct: 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKL 575
Query: 101 YKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGY-MKSLTHIDASHNTISYV 159
+ +N + + G L L + N+IE +PE+ + + SHN + Y+
Sbjct: 576 GLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI 634
Query: 160 P 160
P
Sbjct: 635 P 635
Score = 78.4 bits (193), Expect = 2e-17
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 10/123 (8%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIA 111
KL +L+ +N ++ L L +L L+ NQ+E I + + S+N +
Sbjct: 574 KLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK 632
Query: 112 KISD--NIGNLTSLLVLNISNNKIESLPENIG------YMKSLTHIDASHNTISYVPWKL 163
I + N ++ + ++ S NKI S NI + + + S+N I P +L
Sbjct: 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL 692
Query: 164 FSK 166
F+
Sbjct: 693 FAT 695
Score = 77.6 bits (191), Expect = 3e-17
Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 17/131 (12%)
Query: 53 KLKVLNLQYNNLKGLPDE--------IRHLTNLNELALNNNQLEMINE--AVYDLPHLYK 102
+ + L N + +P+ ++ L + L N+L +++ LP+L
Sbjct: 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSN 757
Query: 103 FNVSNNMIAKISDNIGNLTSLLVLNIS-------NNKIESLPENIGYMKSLTHIDASHNT 155
+VS N + N + L I N + P I SL + N
Sbjct: 758 MDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817
Query: 156 ISYVPWKLFSK 166
I V KL +
Sbjct: 818 IRKVDEKLTPQ 828
Score = 74.9 bits (184), Expect = 3e-16
Identities = 22/131 (16%), Positives = 49/131 (37%), Gaps = 14/131 (10%)
Query: 44 NMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELAL-NNNQLEMINEAVYDLPHLY 101
+ + + N Y +L +L ++ L N + + + +YDLP L
Sbjct: 459 PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518
Query: 102 KFNVSNNMI----------AKISDNIGNLTSLLVLNISNNKIESLPEN--IGYMKSLTHI 149
N++ N +++D+ + + + N +E P + + M L +
Sbjct: 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL 578
Query: 150 DASHNTISYVP 160
D HN + ++
Sbjct: 579 DCVHNKVRHLE 589
Score = 74.5 bits (183), Expect = 3e-16
Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 10/123 (8%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVY--DLPHLYKFNVSNNM 109
KL L L YN ++ +P++ + L ++N+L+ I + + + S N
Sbjct: 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK 655
Query: 110 IAKISDNIG------NLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWK 162
I NI + + +S N+I+ P + ++ I S+N ++ +P
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715
Query: 163 LFS 165
Sbjct: 716 SLK 718
Score = 70.7 bits (173), Expect = 7e-15
Identities = 17/123 (13%), Positives = 38/123 (30%), Gaps = 18/123 (14%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
L +++ YN P + + + L + + + N ++ +
Sbjct: 754 YLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR----------------DAEGNRILRQ 797
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRS 172
I SL+ L I +N I + E + L +D + N + + +
Sbjct: 798 WPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGM 855
Query: 173 SRF 175
Sbjct: 856 YVL 858
Score = 68.0 bits (166), Expect = 6e-14
Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 31/140 (22%)
Query: 52 LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNV------ 105
LK + N + + I+ LT L + N+ N AV +
Sbjct: 425 LKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE 484
Query: 106 ---------------SNNMIAKISDNIGNLTSLLVLNISNNKIES----------LPENI 140
+ + ++ D + +L L LNI+ N+ S L ++
Sbjct: 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDE 544
Query: 141 GYMKSLTHIDASHNTISYVP 160
+ +N + P
Sbjct: 545 DTGPKIQIFYMGYNNLEEFP 564
Score = 61.0 bits (148), Expect = 1e-11
Identities = 20/141 (14%), Positives = 41/141 (29%), Gaps = 33/141 (23%)
Query: 53 KLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQL------------------------ 87
++ L+L KG +PD I LT L L+ +
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383
Query: 88 --EMINEAVYDLPHLYKFNVSNNMIAK------ISDNIGNLTSLLVLNISNNKIESLPEN 139
+ L ++ + I + I + + N+I + +
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA 443
Query: 140 IGYMKSLTHIDASHNTISYVP 160
I + L I +++ +Y
Sbjct: 444 IQRLTKLQIIYFANSPFTYDN 464
Score = 47.6 bits (113), Expect = 7e-07
Identities = 22/158 (13%), Positives = 39/158 (24%), Gaps = 54/158 (34%)
Query: 53 KLKVLNLQYNNLKGLPDEI--------------------------RHLTNLNELALNNNQ 86
+LKVL+ ++ + LN L +
Sbjct: 348 ELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407
Query: 87 LEMINEAVY-------DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKI------ 133
+ E L N I IS I LT L ++ +N+
Sbjct: 408 INRNPEMKPIKKDSRISLKDTQ-IGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIA 466
Query: 134 --------------ESLPENIGYMKSLTHIDASHNTIS 157
E+ + +K LT ++ +
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504
Score = 35.2 bits (81), Expect = 0.008
Identities = 12/96 (12%), Positives = 30/96 (31%), Gaps = 2/96 (2%)
Query: 67 LPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI-SDNIGNLTSLLV 125
+ D L N + + FN +M ++ N +
Sbjct: 268 IKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTG 327
Query: 126 LNISNNKIE-SLPENIGYMKSLTHIDASHNTISYVP 160
L+++ + +P+ IG + L + ++ +
Sbjct: 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 79.9 bits (197), Expect = 2e-18
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMI 110
L L L +N+L + E + NL L L++N L ++E + DL L + NN I
Sbjct: 65 NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI 124
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPE----NIGYMKSLTHIDASHNTISYVPWKLFS 165
+ N ++ L L +S N+I P + + L +D S N + +P
Sbjct: 125 VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ 184
Score = 79.1 bits (195), Expect = 5e-18
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 5/117 (4%)
Query: 54 LKVLNLQYNNLKGLPDEI--RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
+L+L +NNL L E LTNL+ L L++N L I+ + +P+L ++S+N +
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFS 165
+ + + +L +L VL + NN I + N M L + S N IS P +L
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157
Score = 54.8 bits (132), Expect = 2e-09
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD----LPHLYKFNVSN 107
L+VL L N++ + + L +L L+ NQ+ + LP L ++S+
Sbjct: 113 ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172
Query: 108 NMIAKISDN-IGNLTSL--LVLNISNN 131
N + K+ + L + L + NN
Sbjct: 173 NKLKKLPLTDLQKLPAWVKNGLYLHNN 199
Score = 42.5 bits (100), Expect = 3e-05
Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 98 PHLYKFNVSNNMIAKISDNI--GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHN 154
+ ++S+N ++++ LT+L L +S+N + + + +L ++D S N
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98
Query: 155 TISYVPWKLFSK 166
+ + LFS
Sbjct: 99 HLHTLDEFLFSD 110
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 79.4 bits (196), Expect = 8e-18
Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 6/123 (4%)
Query: 53 KLKVLNLQYNNLKGLPDEI--RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNM 109
+L+ L+ Q++NLK + + L NL L +++ + +++ L L ++ N
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456
Query: 110 IAKI--SDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
+ D L +L L++S ++E L + SL ++ + N + VP +F +
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516
Query: 167 FHQ 169
Sbjct: 517 LTS 519
Score = 74.0 bits (182), Expect = 4e-16
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
Query: 53 KLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
+L+VL+L ++ + D + L++L+ L L N ++ + + L L K +
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 111 AKISDN-IGNLTSLLVLNISNNKIESL--PENIGYMKSLTHIDASHNTISYVPWKLFSKF 167
A + + IG+L +L LN+++N I+S PE + +L H+D S N I +
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Query: 168 HQ 169
HQ
Sbjct: 173 HQ 174
Score = 72.1 bits (177), Expect = 2e-15
Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 6/121 (4%)
Query: 54 LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI---NEAVYDLPHLYKFNVSNNMI 110
LK L N E+ L +L L L+ N L +++ + L ++S N +
Sbjct: 327 LKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385
Query: 111 AKISDNIGNLTSLLVLNISNNKIESLPENI--GYMKSLTHIDASHNTISYVPWKLFSKFH 168
+S N L L L+ ++ ++ + E +++L ++D SH +F+
Sbjct: 386 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445
Query: 169 Q 169
Sbjct: 446 S 446
Score = 70.9 bits (174), Expect = 5e-15
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVY--DLPHLYKFNVSNNMI 110
LK L+L +N + + L L L ++ L+ ++E L +L ++S+
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 111 AKISDNI-GNLTSLLVLNISNNKIES--LPENIGYMKSLTHIDASHNTISYVPWKLFSKF 167
+ I L+SL VL ++ N + LP+ +++LT +D S + + F+
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493
Query: 168 HQ 169
Sbjct: 494 SS 495
Score = 70.5 bits (173), Expect = 8e-15
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 54 LKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIA 111
K L+L +N L+ L L L L+ +++ I + A L HL ++ N I
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVP 160
++ L+SL L + SL IG++K+L ++ +HN I
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140
Score = 70.1 bits (172), Expect = 1e-14
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMI 110
L L L N ++ L L++L +L L + N + L L + NV++N+I
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 111 AKIS--DNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLT----HIDASHNTISYVPWKL 163
+ NLT+L L++S+NKI+S+ + + + +D S N ++++
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Query: 164 FSKFH 168
F +
Sbjct: 197 FKEIR 201
Score = 64.4 bits (157), Expect = 1e-12
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
Query: 52 LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
+ L L P L +L L +N+ V DLP L ++S N ++
Sbjct: 304 FGWQHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLS 360
Query: 112 KI---SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
S + TSL L++S N + ++ N ++ L H+D H+ + +
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 412
Score = 59.3 bits (144), Expect = 6e-11
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 53 KLKVLNLQYNNLKG--LPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNM 109
L+VL + N+ + LPD L NL L L+ QLE + A L L N+++N
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505
Query: 110 IAKISDNI-GNLTSLLVLNISNNKIESLPENIGYM 143
+ + D I LTSL + + N + I Y+
Sbjct: 506 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540
Score = 44.3 bits (105), Expect = 7e-06
Identities = 18/116 (15%), Positives = 37/116 (31%), Gaps = 25/116 (21%)
Query: 55 KVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKIS 114
N +PD + + L L+ N L + S
Sbjct: 10 ITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLG----------------------S 45
Query: 115 DNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
+ + L VL++S +I+++ + + L+ + + N I + FS
Sbjct: 46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101
Score = 43.5 bits (103), Expect = 1e-05
Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 13/122 (10%)
Query: 52 LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQL--EMINEAVYDLPHL------YKF 103
L L+L N + + L++L L NN ++ + L L
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236
Query: 104 NVSNNMIAKISDNI-GNLTSLLVLNISNNKIESLPENIGY----MKSLTHIDASHNTISY 158
+ + K + L +L + ++ ++I + +++ TI
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296
Query: 159 VP 160
V
Sbjct: 297 VK 298
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 78.5 bits (194), Expect = 8e-18
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMIA 111
KL + + N+ +P + +L EL L+ N++ ++ A L +L K +S N I+
Sbjct: 172 KLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229
Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLF 164
+ + N L L+++NNK+ +P + K + + +N IS + F
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
Score = 69.6 bits (171), Expect = 1e-14
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMI- 110
KL+ L L N LK LP+++ L EL ++ N++ + ++V L + + N +
Sbjct: 101 KLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158
Query: 111 -AKISDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFH 168
+ I + + L + I++ I ++P+ + SLT + N I+ V +
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLN 216
Query: 169 Q 169
Sbjct: 217 N 217
Score = 66.9 bits (164), Expect = 9e-14
Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 11/113 (9%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
L L L +N++ + + + +L EL LNNN+L + + D ++ + NN I+
Sbjct: 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 276
Query: 112 KISDN-------IGNLTSLLVLNISNNKIE--SLPENI-GYMKSLTHIDASHN 154
I N S +++ +N ++ + + + + +
Sbjct: 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 65.8 bits (161), Expect = 3e-13
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 7/119 (5%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
L L L N + + L L L L+ NQL+ + E + L + V N I
Sbjct: 77 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEIT 134
Query: 112 KISDNI-GNLTSLLVLNISNNKIES--LPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
K+ ++ L ++V+ + N ++S + MK L++I + I+ +P L
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS 193
Score = 64.6 bits (158), Expect = 6e-13
Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 7/118 (5%)
Query: 53 KLKVLNLQYNNLK--GLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNM 109
++ V+ L N LK G+ + + + L+ + + + + I + + P L + ++ N
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNK 203
Query: 110 IAKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFS 165
I K+ L +L L +S N I ++ L + ++N + VP L
Sbjct: 204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261
Score = 62.7 bits (153), Expect = 3e-12
Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 7/117 (5%)
Query: 54 LKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI---NEAVYDLPHLYKFNVSNNM 109
L+ L + N + + + L + + L N L+ N A + L +++
Sbjct: 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182
Query: 110 IAKISDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFS 165
I I G SL L++ NKI + + +L + S N+IS V +
Sbjct: 183 ITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237
Score = 62.7 bits (153), Expect = 3e-12
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 54 LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIAK 112
L+V+ L+ +P ++ + L L NN++ I + + L +L+ + NN I+K
Sbjct: 33 LRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90
Query: 113 ISDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFS 165
IS L L L +S N+++ LPE + K+L + N I+ V +F+
Sbjct: 91 ISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFN 142
Score = 54.6 bits (132), Expect = 2e-09
Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 10/90 (11%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVY-------DLPHLYKFNV 105
L+ L+L N L +P + + + L+NN + I + ++
Sbjct: 241 HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300
Query: 106 SNNMI--AKISDNI-GNLTSLLVLNISNNK 132
+N + +I + + + + N K
Sbjct: 301 FSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
Score = 34.6 bits (80), Expect = 0.013
Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 106 SNNMIAKISDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLF 164
S+ + K+ ++ +L++ NNKI + + +K+L + +N IS + F
Sbjct: 39 SDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 96
Query: 165 SK 166
+
Sbjct: 97 AP 98
Score = 25.7 bits (57), Expect = 9.6
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 122 SLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
L V+ S+ +E +P+++ +D +N I+ + F
Sbjct: 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKN 77
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 78.6 bits (193), Expect = 1e-17
Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 55 KVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKIS 114
+VL+L + +L L + L + L L++N+L + A+ L L S+N + +
Sbjct: 444 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV- 501
Query: 115 DNIGNLTSLLVLNISNNKIESLPE--NIGYMKSLTHIDASHNTISYVP 160
D + NL L L + NN+++ + L ++ N++
Sbjct: 502 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549
Score = 70.2 bits (171), Expect = 1e-14
Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+ L+L +N L+ LP + L L L ++N LE ++ V +LP L + + NN + +
Sbjct: 464 LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQQ 522
Query: 113 ISD--NIGNLTSLLVLNISNNKIESLPENIGYMKSL 146
+ + + L++LN+ N + + +
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558
Score = 69.0 bits (168), Expect = 3e-14
Identities = 19/118 (16%), Positives = 47/118 (39%), Gaps = 2/118 (1%)
Query: 43 SNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYK 102
S + +P+ + +L+ L ++ L L + L ++ + L +
Sbjct: 409 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CHLEQLLLVTH 467
Query: 103 FNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
++S+N + + + L L VL S+N +E++ + + L + +N +
Sbjct: 468 LDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSA 524
Score = 45.5 bits (107), Expect = 3e-06
Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%)
Query: 34 ISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMIN-- 91
+ +S + QSE ++ L+ N L I + L+ L L+ +
Sbjct: 352 FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL 411
Query: 92 EAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDA 151
+AV + Y ++ + + + S + VL++++ + L ++ + +TH+D
Sbjct: 412 KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CHLEQLLLVTHLDL 470
Query: 152 SHNTISYVPWKL 163
SHN + +P L
Sbjct: 471 SHNRLRALPPAL 482
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 77.3 bits (191), Expect = 1e-17
Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 4/121 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMI 110
+L L+L L+ L + R L L L L +N L+ + + DL +L + N I
Sbjct: 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKFH 168
+ + + L SL L + N++ + + + L + N +S +P + +
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225
Query: 169 Q 169
Sbjct: 226 A 226
Score = 77.0 bits (190), Expect = 1e-17
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 9/113 (7%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
L+ L LQ N L+ LPD+ R L NL L L+ N++ + E + L L + + N +
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
A + + +L L+ L + N + +LP +++L ++ + N PW
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN-----PW 237
Score = 73.1 bits (180), Expect = 4e-16
Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 5/118 (4%)
Query: 54 LKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNM-I 110
+ + L N + +P R NL L L++N L I+ A L L + ++S+N +
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
+ L L L++ ++ L + + +L ++ N + +P F
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Score = 71.2 bits (175), Expect = 2e-15
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELAL-NNNQLEMINEAV-YDLPHLYKFNVSNNM 109
L +L L N L + L L +L L +N QL ++ A + L L+ ++
Sbjct: 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116
Query: 110 IAKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKF 167
+ ++ + L +L L + +N +++LP++ + +LTH+ N IS VP + F
Sbjct: 117 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176
Query: 168 HQ 169
H
Sbjct: 177 HS 178
Score = 52.7 bits (127), Expect = 8e-09
Identities = 18/117 (15%), Positives = 43/117 (36%), Gaps = 6/117 (5%)
Query: 57 LNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIAKISD 115
+ L+ +P I + L+ N++ + + +L + +N++A+I
Sbjct: 16 TSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73
Query: 116 NI-GNLTSLLVLNISNN-KIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
L L L++S+N ++ S+ + L + + + LF
Sbjct: 74 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 77.0 bits (190), Expect = 2e-17
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 7/115 (6%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMI 110
+ K+ + ++LK + + N+ EL L+ N L I + L N+S+N++
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70
Query: 111 AKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFS 165
+ D + +L++L L+++NN ++ L S+ + A++N IS V
Sbjct: 71 YETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSRGQ 120
Score = 74.3 bits (183), Expect = 2e-16
Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 8/118 (6%)
Query: 53 KLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
+K L+L N L + ++ T L L L++N L + L L +++NN +
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LDLESLSTLRTLDLNNNYVQ 93
Query: 112 KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
+ S+ L+ +NN I + + G + +I ++N I+ + +
Sbjct: 94 ----ELLVGPSIETLHAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSR 145
Score = 73.5 bits (181), Expect = 4e-16
Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
L+ LNLQYN + + ++ L L L++N+L + + ++ NN +
Sbjct: 170 TLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
I + +L ++ N + K+ + T+ +
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276
Score = 71.2 bits (175), Expect = 2e-15
Identities = 18/111 (16%), Positives = 43/111 (38%), Gaps = 6/111 (5%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIA 111
++ L+ NN+ + + L NN++ M+ + + ++ N I
Sbjct: 100 SIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157
Query: 112 KISDN--IGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
++ + +L LN+ N I + + L +D S N ++++
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMG 207
Score = 67.7 bits (166), Expect = 4e-14
Identities = 21/115 (18%), Positives = 48/115 (41%), Gaps = 9/115 (7%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
L+ L+L N ++ L ++ L NN + ++ + ++NN I
Sbjct: 81 TLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITM 134
Query: 113 ISDN-IGNLTSLLVLNISNNKIESLPEN--IGYMKSLTHIDASHNTISYVPWKLF 164
+ D G + + L++ N+I+++ +L H++ +N I V ++
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189
Score = 66.9 bits (164), Expect = 8e-14
Identities = 20/112 (17%), Positives = 42/112 (37%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
KLK L+L N L + E + + ++L NN+L +I +A+ +L F++ N
Sbjct: 192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC 251
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLF 164
+ + V ++ ++ L ++ + F
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303
Score = 63.5 bits (155), Expect = 2e-12
Identities = 14/97 (14%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 66 GLPDEIRHLTNLNELALNNNQLEMINEAVY-DLPHLYKFNVSNNMIAKISDN-IGNLTSL 123
+ + ++ + ++ L+ ++ ++ + ++S N +++IS + T L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 124 LVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
+LN+S+N + + + + +L +D ++N + +
Sbjct: 61 ELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL 96
Score = 41.1 bits (97), Expect = 7e-05
Identities = 7/58 (12%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIG-YMKSLTHIDASHNTISYVPWKLFSKFHQ 169
I + N + ++++ ++ ++ ++ +D S N +S + + F +
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 76.7 bits (189), Expect = 2e-17
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
L VL++ +N L LP R L L EL L N+L+ + + P L K +++NN +
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPW 161
++ + L +L L + N + ++P+ L N PW
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN-----PW 207
Score = 74.0 bits (182), Expect = 2e-16
Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 3/115 (2%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIA 111
L L+L +N L+ LP + L L L ++ N+L + L L + + N +
Sbjct: 78 VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLF 164
+ + L L+++NN + LP + +++L + N++ +P F
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 70.1 bits (172), Expect = 6e-15
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+L LNL L L L L L L++NQL+ + LP L +VS N +
Sbjct: 56 RLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 113 ISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
+ L L L + N++++LP + L + ++N ++ +P L +
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173
Score = 67.1 bits (164), Expect = 7e-14
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 3/115 (2%)
Query: 54 LKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+L+L N L T L +L L+ +L + + LP L ++S+N +
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQS 91
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
+ L +L VL++S N++ SLP + L + N + +P L +
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Score = 28.9 bits (65), Expect = 0.89
Identities = 5/56 (8%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 106 SNNMIAKISDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVP 160
+ + ++ +L++S N + + LT ++ ++ +
Sbjct: 18 DKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ 71
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 77.8 bits (192), Expect = 2e-17
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 52 LKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNM 109
L L L++ + NL +P +RHL L L L+ N + I ++ ++L L + +
Sbjct: 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283
Query: 110 IAKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTIS 157
+A + L L VLN+S N++ +L E++ + +L + N ++
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
Score = 77.4 bits (191), Expect = 3e-17
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Query: 54 LKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIA 111
++L+L N +K L + +L EL LN N + + A +L +L + +N +
Sbjct: 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFS 165
I + L++L L+IS NKI L + + + +L ++ N + Y+ + FS
Sbjct: 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149
Score = 77.1 bits (190), Expect = 5e-17
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
L+ L L N + + +L NL L L +N+L++I V+ L +L K ++S N I
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFS 165
+ D + +L +L L + +N + + + SL + ++ +P + S
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173
Score = 75.9 bits (187), Expect = 1e-16
Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVS-NNM 109
L+ L L+ NL +P E HL L L L + + I + + L L +S
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212
Query: 110 IAKISDNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFH 168
+ ++ N +L L+I++ + ++P + ++ L ++ S+N IS + + +
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272
Query: 169 Q 169
+
Sbjct: 273 R 273
Score = 74.4 bits (183), Expect = 4e-16
Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
Query: 53 KLKVLNLQYNN-LKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMI 110
+LKVL + + L + + NL L++ + L + AV L +L N+S N I
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFS 165
+ I ++ L L + + ++ + + L ++ S N ++ + +F
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 317
Score = 68.6 bits (168), Expect = 4e-14
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Query: 55 KVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMIAKI 113
+ + +P+ I T L L N+++ +N+ PHL + ++ N+++ +
Sbjct: 14 RAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71
Query: 114 SDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
NL +L L + +N+++ +P + + +LT +D S N I + +F +
Sbjct: 72 EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 77.5 bits (191), Expect = 3e-17
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIA 111
L+ LNL NL+ +P+ + L L+EL L+ N L I + L HL K + + I
Sbjct: 186 NLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244
Query: 112 KISDN-IGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
I N NL SL+ +N+++N + LP ++ + L I HN PW
Sbjct: 245 VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN-----PW 291
Score = 76.7 bits (189), Expect = 5e-17
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVS-NNM 109
L L L N L +P+ +L+ L EL L NN +E I +P L + ++
Sbjct: 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR 172
Query: 110 IAKISDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFH 168
++ IS+ L++L LN++ + +P + + L +D S N +S + F
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLM 231
Query: 169 Q 169
Sbjct: 232 H 232
Score = 74.8 bits (184), Expect = 3e-16
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 5/121 (4%)
Query: 53 KLKVLNLQ-YNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMI 110
L+ L+L L + + L+NL L L L I + L L + ++S N +
Sbjct: 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHL 219
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFH 168
+ I L L L + ++I+ + N ++SL I+ +HN ++ +P LF+ H
Sbjct: 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279
Query: 169 Q 169
Sbjct: 280 H 280
Score = 74.0 bits (182), Expect = 4e-16
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMI 110
L++L L N+++ + L NLN L L +N+L I N A L L + + NN I
Sbjct: 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148
Query: 111 AKISDNI-GNLTSLLVLNIS-NNKIESLPENI-GYMKSLTHIDASHNTISYVP 160
I + SL L++ ++ + E + +L +++ + + +P
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201
Score = 72.5 bits (178), Expect = 1e-15
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
Query: 54 LKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMIA 111
++LNL N ++ + +HL +L L L+ N + I L +L + +N +
Sbjct: 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125
Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASH-NTISYVPWKLFSK 166
I + L+ L L + NN IES+P + SL +D +SY+ F
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183
Score = 64.0 bits (156), Expect = 1e-12
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINE-AVYDLPHLYKFNVSNNMIA 111
+ + NL+ +PD I TN L L+ NQ+++I + L HL +S N I
Sbjct: 44 QFSKVICVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101
Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFS 165
I L +L L + +N++ ++P Y+ L + +N I +P F+
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN 157
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 76.2 bits (188), Expect = 3e-17
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINE--AVYDLPHLYKFNVSNNMI 110
LK L+L +N + + L L L ++ L+ ++E L +L ++S+
Sbjct: 79 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138
Query: 111 AKISDNI-GNLTSLLVLNISNNK-IESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKF 167
+ I L+SL VL ++ N E+ +I +++LT +D S + + F+
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198
Query: 168 HQ 169
Sbjct: 199 SS 200
Score = 74.3 bits (183), Expect = 2e-16
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 54 LKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI---NEAVYDLPHLYKFNVSNNM 109
L L+ N L+ LP + LT L +L+L++N L +++ + L ++S N
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89
Query: 110 IAKISDNIGNLTSLLVLNISNNKIESLPEN--IGYMKSLTHIDASHNTISYVPWKLFS 165
+ +S N L L L+ ++ ++ + E +++L ++D SH +F+
Sbjct: 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147
Score = 73.9 bits (182), Expect = 2e-16
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELAL-NNNQLEMINEAV-YDLPHLYKFNVSNNM 109
L L++ + + + + I L++L L + N+ E + +L +L ++S
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186
Query: 110 IAKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKF 167
+ ++S +L+SL VLN+S+N SL + SL +D S N I + F
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246
Query: 168 HQN 170
+
Sbjct: 247 PSS 249
Score = 70.4 bits (173), Expect = 5e-15
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query: 53 KLKVLNLQYNN-LKGLPDEI-RHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNM 109
L+VL + N+ + +I L NL L L+ QLE ++ L L N+S+N
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210
Query: 110 IAKISDNI-GNLTSLLVLNISNNKIESLPENI--GYMKSLTHIDASHN 154
+ L SL VL+ S N I + + + SL ++ + N
Sbjct: 211 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
Score = 69.7 bits (171), Expect = 9e-15
Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 7/124 (5%)
Query: 53 KLKVLNLQYNNLKGL---PDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNM 109
+L L+L N L T+L L L+ N + ++ L L + ++
Sbjct: 53 QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 112
Query: 110 IAKISDN--IGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNT-ISYVPWKLFS 165
+ ++S+ +L +L+ L+IS+ I + SL + + N+ +F+
Sbjct: 113 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172
Query: 166 KFHQ 169
+
Sbjct: 173 ELRN 176
Score = 61.2 bits (149), Expect = 9e-12
Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Query: 55 KVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIAKI 113
+ L +P I ++ L L +N+L+ + V+D L L K ++S+N ++
Sbjct: 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67
Query: 114 SDNIG---NLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
TSL L++S N + ++ N ++ L H+D H+ + +
Sbjct: 68 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 117
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 77.4 bits (191), Expect = 4e-17
Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Query: 52 LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINE--AVYDLPHLYKFNVSNNM 109
L+ L+L +N + L L L ++ L+ + E A L L ++S
Sbjct: 376 NSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435
Query: 110 IAKISDNI-GNLTSLLVLNISNNKIES--LPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
D I LTSL L ++ N + L +LT +D S + + W +F
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495
Query: 167 FHQ 169
H+
Sbjct: 496 LHR 498
Score = 73.1 bits (180), Expect = 1e-15
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 54 LKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIA 111
K ++L +N LK L + + L L L+ ++E I ++A + L HL ++ N I
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93
Query: 112 KISDN-IGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVP 160
S LTSL L K+ SL IG + +L ++ +HN I
Sbjct: 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK 144
Score = 71.6 bits (176), Expect = 3e-15
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI--NEAVYDLPHLYKFNVSNNM 109
KL L++ Y N K D I LT+LN L + N + + + +L ++S
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484
Query: 110 IAKISDNI-GNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFS 165
+ +IS + L L +LN+S+N + L + + SL+ +D S N I L
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH 542
Score = 70.8 bits (174), Expect = 6e-15
Identities = 22/123 (17%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 53 KLKVLNLQYNNLKGLPDE--IRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNM 109
+L+ L+ Q++ LK + + L L L ++ ++ + L L ++ N
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459
Query: 110 IAKI--SDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
S+ N T+L L++S ++E + + + L ++ SHN + ++ +++
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519
Query: 167 FHQ 169
+
Sbjct: 520 LYS 522
Score = 68.5 bits (168), Expect = 4e-14
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 53 KLKVLNLQYNNLKG--LPDEIRHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNM 109
L L + N+ K L + + TNL L L+ QLE I+ V L L N+S+N
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508
Query: 110 IAKISDN-IGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTIS 157
+ + + L SL L+ S N+IE+ + + KSL + ++N+++
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
Score = 66.6 bits (163), Expect = 2e-13
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
Query: 52 LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
K + L++ LK P L L L L N+ + + V LP L ++S N ++
Sbjct: 307 FKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFKKV-ALPSLSYLDLSRNALS 363
Query: 112 KISDNI---GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
SL L++S N + N ++ L H+D H+T+ V
Sbjct: 364 FSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVT 415
Score = 66.2 bits (162), Expect = 3e-13
Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 6/122 (4%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD---LPHLYKFNVSNNM 109
LK L L N ++ L +L+ L L+ N L Y L ++S N
Sbjct: 329 FLKSLTLTMNKGSISFKKV-ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387
Query: 110 IAKISDNIGNLTSLLVLNISNNKIESLPEN--IGYMKSLTHIDASHNTISYVPWKLFSKF 167
+S N L L L+ ++ ++ + E ++ L ++D S+ +F
Sbjct: 388 AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447
Query: 168 HQ 169
Sbjct: 448 TS 449
Score = 65.8 bits (161), Expect = 3e-13
Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 9/131 (6%)
Query: 53 KLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMIN--EAVYDLPHLYKFNVSNNM 109
L+ L L L I L L +L + +N + +L +L ++S N
Sbjct: 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164
Query: 110 IAKISDNI-----GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY-VPWKL 163
I I+ N N L L++S N I+ + + L + N S +
Sbjct: 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTC 224
Query: 164 FSKFHQNRSSR 174
R
Sbjct: 225 LQNLAGLHVHR 235
Score = 57.0 bits (138), Expect = 4e-10
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 53 KLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEMINEAVY-DLPHLYKFNVSNNMI 110
L L+L L+ + L L L +++N L ++ + Y L L + S N I
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI 140
+ SL N++NN + + E+
Sbjct: 534 ETSKGILQHFPKSLAFFNLTNNSVACICEHQ 564
Score = 48.5 bits (116), Expect = 3e-07
Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 13/121 (10%)
Query: 54 LKVLNLQYNNLKGL-------PDEIRHLTNL--NELALNNNQLEMINEAV-YDLPHLYKF 103
L V L K P + L ++ +E L + + L ++
Sbjct: 231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290
Query: 104 NVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKL 163
+++ I + D L+I +++ P + L + + N S K+
Sbjct: 291 SLAGVSIKYLEDVP-KHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFKKV 347
Query: 164 F 164
Sbjct: 348 A 348
Score = 46.9 bits (112), Expect = 1e-06
Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 25/116 (21%)
Query: 51 VLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMI 110
V+ L +PD+I ++ + L+ N L+++
Sbjct: 10 VVPNITYQCMDQKLSKVPDDI--PSSTKNIDLSFNPLKIL-------------------- 47
Query: 111 AKISDNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFS 165
S + N + L L++S +IE++ + + L+++ + N I FS
Sbjct: 48 --KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101
Score = 46.6 bits (111), Expect = 1e-06
Identities = 16/121 (13%), Positives = 40/121 (33%), Gaps = 13/121 (10%)
Query: 52 LKLKVLNLQYNNLKG--LPDEIRHLTNLNELAL------NNNQLEMINEAVYD-LPHLYK 102
+KL L L+ N + +++L L+ L + LE+ ++ + L +
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263
Query: 103 FNVS---NNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYV 159
N + L ++ ++++ I+ L + + +
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK-HFKWQSLSIIRCQLKQF 322
Query: 160 P 160
P
Sbjct: 323 P 323
Score = 31.5 bits (72), Expect = 0.13
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 106 SNNMIAKISDNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLF 164
+ ++K+ D+I +S +++S N ++ L L +D S I + K +
Sbjct: 19 MDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW 76
Query: 165 SKFHQ 169
H
Sbjct: 77 HGLHH 81
Score = 28.1 bits (63), Expect = 1.7
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 124 LVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
+ + K+ +P++I S +ID S N + + FS F +
Sbjct: 14 ITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSE 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 76.7 bits (189), Expect = 6e-17
Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 9/112 (8%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIA 111
LK LNL N+K +P+ + L L EL ++ N I + + L L K V N+ ++
Sbjct: 197 NLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255
Query: 112 KISDN-IGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
I N L SL+ LN+++N + SLP ++ ++ L + HN PW
Sbjct: 256 LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN-----PW 302
Score = 74.0 bits (182), Expect = 5e-16
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Query: 53 KLKVLNLQ-YNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMI 110
L L+L L+ + + L NL L L ++ + + L L + +S N
Sbjct: 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHF 230
Query: 111 AKISDN-IGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFH 168
+I L+SL L + N+++ + N + SL ++ +HN +S +P LF+
Sbjct: 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290
Query: 169 Q 169
Sbjct: 291 Y 291
Score = 73.6 bits (181), Expect = 6e-16
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMI 110
L+VL L N+++ + L +LN L L +N L +I + A L L + + NN I
Sbjct: 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI 159
Query: 111 AKISDNI-GNLTSLLVLNIS-NNKIESLPENI-GYMKSLTHIDASHNTISYVP 160
I + SL+ L++ K+E + E + +L +++ I +P
Sbjct: 160 ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212
Score = 62.8 bits (153), Expect = 3e-12
Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 5/120 (4%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINE-AVYDLPHLYKFNVSNNMIA 111
+ + L +P I +N L L N ++MI L HL + N I
Sbjct: 55 QFSKVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112
Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
+I L SL L + +N + +P Y+ L + +N I +P F++
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 76.5 bits (188), Expect = 8e-17
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIA 111
+L +L LQ+NNL + + L E+ L+ N+LE I + L + +SNN +
Sbjct: 233 ELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291
Query: 112 KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
++ + +L VL++S+N + + N L ++ HN+I +
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHT 346
Score = 75.7 bits (186), Expect = 1e-16
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
L ++L YN L+ + + L L ++NN+L +N +P L ++S+N +
Sbjct: 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL 314
Query: 112 KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158
+ N L L + +N I +L + +L ++ SHN
Sbjct: 315 HVERNQPQFDRLENLYLDHNSIVTLKLST--HHTLKNLTLSHNDWDC 359
Score = 73.8 bits (181), Expect = 6e-16
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
K++ + + ++ LP + + L LN+ Q+E I+ + + K + N I
Sbjct: 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 111
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFS 165
+ ++ N+ L VL + N + SLP I LT + S+N + + F
Sbjct: 112 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168
Score = 70.7 bits (173), Expect = 6e-15
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMI 110
L VL L+ N+L LP I + L L+++NN LE I + L +S+N +
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
Query: 111 AKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
+ + SL N+S N + +L I ++ +DASHN+I+ V + +
Sbjct: 184 THVDL--SLIPSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVVRGPVNVE 233
Score = 61.5 bits (149), Expect = 1e-11
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 21/135 (15%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
KL L++ NNL+ + D+ + T+L L L++N+L ++ ++ +P L+ NVS N+++
Sbjct: 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL--IPSLFHANVSYNLLS 205
Query: 112 KISDNI-----------------GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN 154
++ I L +L + +N + + L +D S+N
Sbjct: 206 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLN-YPGLVEVDLSYN 264
Query: 155 TISYVPWKLFSKFHQ 169
+ + + F K +
Sbjct: 265 ELEKIMYHPFVKMQR 279
Score = 61.1 bits (148), Expect = 2e-11
Identities = 19/113 (16%), Positives = 46/113 (40%), Gaps = 4/113 (3%)
Query: 57 LNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIAKISD 115
+++Q ++ ++I L N + N+ + + + + N+++ I +I
Sbjct: 34 IDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT 92
Query: 116 NI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
++ L + N I LP ++ + LT + N +S +P +F
Sbjct: 93 YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145
Score = 53.0 bits (127), Expect = 9e-09
Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 9/121 (7%)
Query: 58 NLQYNNLKGLPDEIRHLTNL-NELALNNNQLEMINEAVY------DLPHLYKFNVSNNMI 110
+YN P+ +NL + + ++M + VY L + N+ +
Sbjct: 4 QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKFH 168
K+ + + + +LN+++ +IE + Y ++ + N I Y+P +F
Sbjct: 64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123
Query: 169 Q 169
Sbjct: 124 L 124
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 75.7 bits (187), Expect = 9e-17
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+L L + N + L + +L+ L L + NQ+ I AV DL L NV +N I+
Sbjct: 222 RLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISD 279
Query: 113 ISDNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISYVP 160
IS + NL+ L L ++NN++ + E IG + +LT + S N I+ +
Sbjct: 280 IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327
Score = 75.7 bits (187), Expect = 9e-17
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
K+ LNL N+ + ++T LN L + ++++ + + +L LY +++ N I
Sbjct: 133 KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV-TPIANLTDLYSLSLNYNQIED 191
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
IS + +LTSL N+I + + M L + +N I+ +
Sbjct: 192 IS-PLASLTSLHYFTAYVNQITDIT-PVANMTRLNSLKIGNNKITDLS 237
Score = 75.3 bits (186), Expect = 1e-16
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
L+ LNL N + + + +L L L + N++ I A+ +L +L + ++ + I+
Sbjct: 67 NLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITDI-SALQNLTNLRELYLNEDNISD 124
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
IS + NLT + LN+ N S + M L ++ + + + V
Sbjct: 125 IS-PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT 171
Score = 75.3 bits (186), Expect = 1e-16
Identities = 22/114 (19%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
L N + + + ++T LN L + NN++ + + +L L + N I+
Sbjct: 200 SLHYFTAYVNQITDIT-PVANMTRLNSLKIGNNKITDL-SPLANLSQLTWLEIGTNQISD 257
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
I+ + +LT L +LN+ +N+I + + + L + ++N + ++
Sbjct: 258 IN-AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGG 309
Score = 73.3 bits (181), Expect = 5e-16
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
L L+L YN ++ + + LT+L+ NQ+ I V ++ L + NN I
Sbjct: 178 DLYSLSLNYNQIEDIS-PLASLTSLHYFTAYVNQITDI-TPVANMTRLNSLKIGNNKITD 235
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
+S + NL+ L L I N+I + + + L ++ N IS +
Sbjct: 236 LS-PLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDIS 281
Score = 72.2 bits (178), Expect = 1e-15
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
KL L + N + + +++LTNL EL LN + + I + +L +Y N+ N
Sbjct: 89 KLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDI-SPLANLTKMYSLNLGANHNLS 146
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
+ N+T L L ++ +K++ + I + L + ++N I
Sbjct: 147 DLSPLSNMTGLNYLTVTESKVKDVT-PIANLTDLYSLSLNYNQIE 190
Score = 69.9 bits (172), Expect = 1e-14
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+ L + + + I +LTNL L LN NQ+ I + +L L + N I
Sbjct: 45 SITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDI-SPLSNLVKLTNLYIGTNKITD 102
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
IS + NLT+L L ++ + I + + + + ++ N
Sbjct: 103 IS-ALQNLTNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDL 148
Score = 69.9 bits (172), Expect = 1e-14
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+L L + N + + ++ LT L L + +NQ+ I + +L L ++NN +
Sbjct: 244 QLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGN 301
Query: 113 IS-DNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
+ IG LT+L L +S N I + + + + D ++ I
Sbjct: 302 EDMEVIGGLTNLTTLFLSQNHITDIR-PLASLSKMDSADFANQVIK 346
Score = 65.6 bits (161), Expect = 2e-13
Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+ LQ ++ + L ++ +L + ++ I + + L +L N++ N I
Sbjct: 23 EGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASI-QGIEYLTNLEYLNLNGNQITD 80
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
IS + NL L L I NKI + + + +L + + + IS +
Sbjct: 81 IS-PLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDIS 126
Score = 61.4 bits (150), Expect = 8e-12
Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 4/107 (3%)
Query: 54 LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
L + + L L + + +L + K V+ +A I
Sbjct: 2 AATLATLPAPINQIF-PDADLAEGIRAVLQKASVTDV-VTQEELESITKLVVAGEKVASI 59
Query: 114 SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
I LT+L LN++ N+I + + + LT++ N I+ +
Sbjct: 60 QG-IEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITDIS 104
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 74.6 bits (184), Expect = 1e-16
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
+L+VL+L ++ + D + L++L+ L L N ++ + + L L K +
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENIGY---MKSLTHIDASHNTISYVPWKLFSK 166
A + + G+L +L LN+++N I+S Y + +L H+D S N I +
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171
Query: 167 FHQ 169
HQ
Sbjct: 172 LHQ 174
Score = 69.6 bits (171), Expect = 7e-15
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 54 LKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIA 111
K L+L +N L+ L L L L+ +++ I + Y L HL ++ N I
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVP 160
++ L+SL L + SL G++K+L ++ +HN I
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140
Score = 67.7 bits (166), Expect = 3e-14
Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 8/120 (6%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVY--DLPHLYKFNVSNNM 109
L+ L NL L + HL L EL + +N ++ Y +L +L ++S+N
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 110 IAKIS----DNIGNLTSL-LVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLF 164
I I + + L L L++S N + + L + N + VP +F
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIF 220
Score = 55.0 bits (133), Expect = 1e-09
Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 5/113 (4%)
Query: 60 QYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIAKISDNI- 117
N +PD + + L L+ N L + + P L ++S I I D
Sbjct: 15 MELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72
Query: 118 GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
+L+ L L ++ N I+SL + SL + A ++ +
Sbjct: 73 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125
Score = 43.0 bits (102), Expect = 2e-05
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 57 LNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNN 108
L+L N + + L ELAL+ NQL+ + + ++D L L K + N
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 37.3 bits (87), Expect = 0.002
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 52 LKLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNN 85
++LK L L N LK +PD I LT+L ++ L+ N
Sbjct: 200 IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 73.2 bits (180), Expect = 1e-16
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 52 LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
+ L+ ++ + + L LAL+ N +E I ++ + +L ++ N+I
Sbjct: 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIK 83
Query: 112 KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
KI + +L L IS N+I SL I + +L + S+N I+
Sbjct: 84 KIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKIT 128
Score = 63.5 bits (155), Expect = 5e-13
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
K L L NN++ + + + NL L+L N ++ I L + +S N IA
Sbjct: 49 ACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS 107
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPE--NIGYMKSLTHIDASHN 154
+S I L +L VL +SNNKI + E + + L + + N
Sbjct: 108 LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150
Score = 42.0 bits (99), Expect = 3e-05
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 87 LEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSL 146
E V + + I K+ + L + L +S N IE + ++ M++L
Sbjct: 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENL 72
Query: 147 THIDASHNTIS 157
+ N I
Sbjct: 73 RILSLGRNLIK 83
Score = 28.9 bits (65), Expect = 0.78
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 53 KLKVLNLQYNNLKGLPD--EIRHLTNLNELALNNNQLEMINEAVYDLPH 99
L+VL + N + + ++ L L +L L N L +
Sbjct: 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 75.0 bits (185), Expect = 2e-16
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 54 LKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIA 111
+ VLNL +N L+ L + L L + N + + E LP L N+ +N ++
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 112 KISDN-IGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFS 165
++SD T+L L++ +N I+ + N K+L +D SHN +S
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142
Score = 75.0 bits (185), Expect = 2e-16
Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 53 KLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQL-EMINEAVYDLPHLYKFNVSNNMI 110
+L L++ +N + L P+ + L L L L +N+L ++ ++ +L + ++ +N I
Sbjct: 50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109
Query: 111 AKISDN-IGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFH 168
KI +N +L+ L++S+N + S +++L + S+N I + + F
Sbjct: 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169
Query: 169 Q 169
Sbjct: 170 N 170
Score = 72.7 bits (179), Expect = 2e-15
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 12/130 (9%)
Query: 53 KLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINEAVY---------DLPHLYK 102
L +L+L NN+ + D+ + L L L L +N L + + L HL+
Sbjct: 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540
Query: 103 FNVSNNMIAKISDN-IGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVP 160
N+ +N +I +L L ++++ N + +LP ++ SL ++ N I+ V
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600
Query: 161 WKLFSKFHQN 170
K+F +N
Sbjct: 601 KKVFGPAFRN 610
Score = 72.0 bits (177), Expect = 2e-15
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 53 KLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMI 110
LKVLNLQ+N L L D+ TNL EL L +N ++ I N +L ++S+N +
Sbjct: 74 MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133
Query: 111 AKISDN-IGNLTSLLVLNISNNKIESLPEN---IGYMKSLTHIDASHNTISYVPWKLFSK 166
+ L +L L +SNNKI++L I SL ++ S N I F
Sbjct: 134 SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193
Query: 167 FHQ 169
+
Sbjct: 194 IGR 196
Score = 71.2 bits (175), Expect = 5e-15
Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 53 KLKVLNLQYNNLKGL--PDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNM 109
L+VL+L N + E R L N+ E+ L+ N+ + + +P L + +
Sbjct: 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465
Query: 110 IAKISDN---IGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFS 165
+ + + L +L +L++SNN I ++ ++ + ++ L +D HN ++ +
Sbjct: 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP 525
Score = 69.3 bits (170), Expect = 2e-14
Identities = 24/135 (17%), Positives = 57/135 (42%), Gaps = 7/135 (5%)
Query: 42 ESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMI--NEAVYDLP 98
+ S L +LNL N + + + L +L L L N++ + L
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430
Query: 99 HLYKFNVSNNMIAKISDN-IGNLTSLLVLNISNNKIESLPEN---IGYMKSLTHIDASHN 154
++++ +S N +++ N + SL L + ++++ + +++LT +D S+N
Sbjct: 431 NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490
Query: 155 TISYVPWKLFSKFHQ 169
I+ + + +
Sbjct: 491 NIANINDDMLEGLEK 505
Score = 69.3 bits (170), Expect = 2e-14
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 5/119 (4%)
Query: 54 LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIAK 112
+V + + L +PD++ TN+ L L +NQL + L +V N I+K
Sbjct: 6 HEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63
Query: 113 ISDN-IGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
+ L L VLN+ +N++ L + + +LT + N+I + F K
Sbjct: 64 LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122
Score = 68.5 bits (168), Expect = 5e-14
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 6/126 (4%)
Query: 53 KLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMI 110
L L+L N+++ + + NL L L++N L L +L + +SNN I
Sbjct: 98 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157
Query: 111 AKISDN---IGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSK 166
+ I +SL L +S+N+I+ + L + ++ + +
Sbjct: 158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL 217
Query: 167 FHQNRS 172
N S
Sbjct: 218 ELANTS 223
Score = 63.5 bits (155), Expect = 3e-12
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI---NEAVYDLPH--LYKFNVS 106
L+ LN++ N++ G+ + L NL L+L+N+ + NE L H L+ N++
Sbjct: 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389
Query: 107 NNMIAKISDN-IGNLTSLLVLNISNNKIESL--PENIGYMKSLTHIDASHNTISYVPWKL 163
N I+KI + L L VL++ N+I + ++++ I S+N +
Sbjct: 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449
Query: 164 FSKFHQ 169
F+
Sbjct: 450 FALVPS 455
Score = 61.6 bits (150), Expect = 1e-11
Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 9/126 (7%)
Query: 53 KLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINEAV----YDLPHLYKFNVSN 107
LK L L N +K P + L L LNN QL + ++SN
Sbjct: 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231
Query: 108 NMIAKISDNIG---NLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKL 163
+ ++ S+ T+L +L++S N + + + ++ L + +N I ++
Sbjct: 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291
Query: 164 FSKFHQ 169
Sbjct: 292 LHGLFN 297
Score = 60.4 bits (147), Expect = 2e-11
Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 17/134 (12%)
Query: 53 KLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQL----------EMINEAVYDLPHLY 101
+L+ L+YNN++ L + L N+ L L + ++ + + L L
Sbjct: 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332
Query: 102 KFNVSNNMIAKISDNI-GNLTSLLVLNISNNKIESLPENIG-----YMKSLTHIDASHNT 155
N+ +N I I N+ L +L L++SN+ L ++ + N
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392
Query: 156 ISYVPWKLFSKFHQ 169
IS + FS
Sbjct: 393 ISKIESDAFSWLGH 406
Score = 60.4 bits (147), Expect = 3e-11
Identities = 26/145 (17%), Positives = 53/145 (36%), Gaps = 15/145 (10%)
Query: 38 TGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEI---RHLTNLNELALNNNQLEMINEAV 94
S + ++ L+L + L + TNL L L+ N L ++
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267
Query: 95 -YDLPHLYKFNVSNNMIAKISDN-IGNLTSLLVLNISNN---------KIESLPEN-IGY 142
LP L F + N I + + + L ++ LN+ + + + + +
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327
Query: 143 MKSLTHIDASHNTISYVPWKLFSKF 167
+K L H++ N I + +F+
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGL 352
Score = 58.9 bits (143), Expect = 1e-10
Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
Query: 53 KLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMI 110
L +LNL+ N + + + L L + L N L + +V + L N+ N+I
Sbjct: 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596
Query: 111 AKISDNI--GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
+ + +L L++ N + E+I + + I+ +H I +
Sbjct: 597 TSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF--VNWINETHTNIPELS 646
Score = 57.7 bits (140), Expect = 2e-10
Identities = 19/111 (17%), Positives = 45/111 (40%), Gaps = 9/111 (8%)
Query: 53 KLKVLNLQYNNLKGLPDEIR----HLTNLNELALNNNQLEMINEAVYD---LPHLYKFNV 105
+L L L L E T++ L+L+N+QL + + +L ++
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255
Query: 106 SNNMIAKISDN-IGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHN 154
S N + + ++ L L + N I+ L + + + ++ +++ +
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306
Score = 30.7 bits (70), Expect = 0.25
Identities = 11/49 (22%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 121 TSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
S V + S+ K+ +P+++ ++T ++ +HN + +P F+++ Q
Sbjct: 4 VSHEVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQ 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 74.3 bits (183), Expect = 3e-16
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
LK++++ N+LK LPD L + NNQLE + E + +LP L NN + K
Sbjct: 154 FLKIIDVDNNSLKKLPDLPPSLEFIA---AGNNQLEELPE-LQNLPFLTAIYADNNSLKK 209
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
+ D +L S+ NN +E LPE + + LT I A +N + +P
Sbjct: 210 LPDLPLSLESI---VAGNNILEELPE-LQNLPFLTTIYADNNLLKTLP 253
Score = 74.3 bits (183), Expect = 4e-16
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
L+ L + N L+ LP E+++ + L + ++NN L+ + + P L NN + +
Sbjct: 132 LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEE 187
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
+ + + NL L + NN ++ LP+ SL I A +N + +P
Sbjct: 188 LPE-LQNLPFLTAIYADNNSLKKLPDLPL---SLESIVAGNNILEELP 231
Score = 70.8 bits (174), Expect = 7e-15
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 10/108 (9%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+ L L L LP+ HL +L + N L + E L L N +
Sbjct: 72 QAHELELNNLGLSSLPELPPHLESLV---ASCNSLTELPELPQSLKSLLVDNNNLK---A 125
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
+SD L L +SNN++E LPE + L ID +N++ +P
Sbjct: 126 LSDLPPLLEYL---GVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLP 169
Score = 68.9 bits (169), Expect = 3e-14
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 22/130 (16%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLN-----------------ELALNNNQLEMINEAVY 95
L+ L N+L LP+ + L +L L ++NNQLE + E +
Sbjct: 92 HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE-LQ 150
Query: 96 DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNT 155
+ L +V NN + K+ D +L + NN++E LPE + + LT I A +N+
Sbjct: 151 NSSFLKIIDVDNNSLKKLPDLPPSLEFI---AAGNNQLEELPE-LQNLPFLTAIYADNNS 206
Query: 156 ISYVPWKLFS 165
+ +P S
Sbjct: 207 LKKLPDLPLS 216
Score = 67.3 bits (165), Expect = 8e-14
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
L+ LN++ N L LP+ + LT L+ + L + P+LY N S+N I
Sbjct: 258 SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL------PPNLYYLNASSNEIRS 311
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFS 165
+ D +L L N+SNNK+ LP L + AS N ++ VP +
Sbjct: 312 LCDLPPSLEEL---NVSNNKLIELPALPP---RLERLIASFNHLAEVPELPQN 358
Score = 67.3 bits (165), Expect = 1e-13
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 18/122 (14%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
L+ + N L+ LP E+++L L + +NN L+ + + P L NV +N +
Sbjct: 216 SLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTD 271
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGY--------------MKSLTHIDASHNTISY 158
+ + +LT L V + + LP N+ Y SL ++ S+N +
Sbjct: 272 LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE 331
Query: 159 VP 160
+P
Sbjct: 332 LP 333
Score = 65.8 bits (161), Expect = 3e-13
Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 17/126 (13%)
Query: 52 LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQL---------EMINEAVYDLP---- 98
L+ +NL +P E ++ + E ++ E AV L
Sbjct: 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70
Query: 99 -HLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
++ ++N ++ + + +L SL S N + LPE +KSL + + +S
Sbjct: 71 RQAHELELNNLGLSSLPELPPHLESL---VASCNSLTELPELPQSLKSLLVDNNNLKALS 127
Query: 158 YVPWKL 163
+P L
Sbjct: 128 DLPPLL 133
Score = 63.5 bits (155), Expect = 2e-12
Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 25/124 (20%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
L LN N ++ L D L LN ++NN+L + P L + S N +A+
Sbjct: 298 NLYYLNASSNEIRSLCDLPPSLEELN---VSNNKLIELPA---LPPRLERLIASFNHLAE 351
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMK----------------SLTHIDASHNTI 156
+ + NL L ++ N + P+ ++ +L + N +
Sbjct: 352 VPELPQNLKQL---HVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408
Query: 157 SYVP 160
P
Sbjct: 409 REFP 412
Score = 59.6 bits (145), Expect = 4e-11
Identities = 18/108 (16%), Positives = 43/108 (39%), Gaps = 13/108 (12%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+L+ L +N+L +P+ ++L L+ + N L + + L N+ +A+
Sbjct: 338 RLERLIASFNHLAEVPELPQNLKQLH---VEYNPLREFPDIPESVEDLR----MNSHLAE 390
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
+ + NL L++ N + P+ S+ + + +
Sbjct: 391 VPELPQNLK---QLHVETNPLREFPDIPE---SVEDLRMNSERVVDPY 432
Score = 52.7 bits (127), Expect = 1e-08
Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 10/102 (9%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
LK L+++YN L+ PD + +L N+ L + E +L + +V N + +
Sbjct: 358 NLKQLHVEYNPLREFPDIPESVEDLRM----NSHLAEVPEL---PQNLKQLHVETNPLRE 410
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN 154
D ++ L +++ ++ E D +
Sbjct: 411 FPDIPESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEH 449
Score = 35.0 bits (81), Expect = 0.010
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQL-EMINEAVYDLPHLYKFNVSNNMI 110
LK L+++ N L+ PD + +L +N+ ++ + A L ++
Sbjct: 397 NLKQLHVETNPLREFPDIPESVEDLR---MNSERVVDPYEFAHETTDKLEDDVFEHHHH 452
Score = 33.0 bits (76), Expect = 0.043
Identities = 7/45 (15%), Positives = 16/45 (35%)
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
I+ + T L ++ + +P +KS T + +
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWE 47
Score = 32.3 bits (74), Expect = 0.067
Identities = 10/85 (11%), Positives = 28/85 (32%), Gaps = 14/85 (16%)
Query: 90 INEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIE-SLPENIG------- 141
IN L + ++ + ++ N+ S + ++ E + P G
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62
Query: 142 ------YMKSLTHIDASHNTISYVP 160
+ ++ ++ +S +P
Sbjct: 63 SRLRDCLDRQAHELELNNLGLSSLP 87
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 74.5 bits (183), Expect = 4e-16
Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 7/115 (6%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNMI 110
+ K+ + ++LK + + N+ EL L+ N L I+ + L N+S+N++
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70
Query: 111 AKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFS 165
+ D + +L++L L+++NN ++ L S+ + A++N IS V
Sbjct: 71 YETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNISRVSCSRGQ 120
Score = 69.9 bits (171), Expect = 1e-14
Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
Query: 53 KLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
+K L+L N L + ++ T L L L++N L + L L +++NN +
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LDLESLSTLRTLDLNNNYVQ 93
Query: 112 KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
+ S+ L+ +NN I + + + +I ++N I+ + +
Sbjct: 94 ----ELLVGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSR 145
Score = 67.6 bits (165), Expect = 8e-14
Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 1/119 (0%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
L+ LNLQYN + + ++ L L L++N+L + + ++ NN +
Sbjct: 170 TLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNR 171
I + +L ++ N + K+ + T+ + + +
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287
Score = 67.2 bits (164), Expect = 1e-13
Identities = 18/111 (16%), Positives = 43/111 (38%), Gaps = 6/111 (5%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIA 111
++ L+ NN+ + + L NN++ M+ + + ++ N I
Sbjct: 100 SIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157
Query: 112 KISDN--IGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
++ + +L LN+ N I + + L +D S N ++++
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMG 207
Score = 66.4 bits (162), Expect = 2e-13
Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 1/123 (0%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
KLK L+L N L + E + + ++L NN+L +I +A+ +L F++ N
Sbjct: 192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC 251
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIG-YMKSLTHIDASHNTISYVPWKLFSKFHQNR 171
+ + V ++ ++ L T +P + +
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALK 311
Query: 172 SSR 174
Sbjct: 312 RKE 314
Score = 65.3 bits (159), Expect = 4e-13
Identities = 21/115 (18%), Positives = 48/115 (41%), Gaps = 9/115 (7%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
L+ L+L N ++ L ++ L NN + ++ + ++NN I
Sbjct: 81 TLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITM 134
Query: 113 ISDN-IGNLTSLLVLNISNNKIESLPEN--IGYMKSLTHIDASHNTISYVPWKLF 164
+ D G + + L++ N+I+++ +L H++ +N I V ++
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189
Score = 60.2 bits (146), Expect = 3e-11
Identities = 14/97 (14%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 66 GLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIAKISDN-IGNLTSL 123
+ + ++ + ++ L+ ++ + ++S N +++IS + T L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 124 LVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
+LN+S+N + + + + +L +D ++N + +
Sbjct: 61 ELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL 96
Score = 43.3 bits (102), Expect = 2e-05
Identities = 7/121 (5%), Positives = 27/121 (22%), Gaps = 8/121 (6%)
Query: 54 LKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEMINEAVYD------LPHLYKFNVS 106
+V + +K L T E + D +
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321
Query: 107 NNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGY-MKSLTHIDASHNTISYVPWKLFS 165
+ ++ N ++ + ++ + + ++ ++ +
Sbjct: 322 GSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRR 381
Query: 166 K 166
Sbjct: 382 A 382
Score = 39.1 bits (91), Expect = 5e-04
Identities = 7/58 (12%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIG-YMKSLTHIDASHNTISYVPWKLFSKFHQ 169
I + N + ++++ ++ ++ ++ +D S N +S + + F +
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59
Score = 34.1 bits (78), Expect = 0.022
Identities = 9/113 (7%), Positives = 33/113 (29%), Gaps = 6/113 (5%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMIN----EAVYDLPHLYKFNVSN 107
+ + ++ + + D++ L L+ A +L + V
Sbjct: 337 RQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396
Query: 108 NMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
+ ++ L L + + + + + ++ D + + +
Sbjct: 397 IELQHATEEQSPLQLLRAI-VKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLA 448
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 74.3 bits (183), Expect = 4e-16
Identities = 21/116 (18%), Positives = 38/116 (32%), Gaps = 4/116 (3%)
Query: 54 LKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIA 111
+ L +N L + L NL L L Q+ I + L ++ N +
Sbjct: 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94
Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFS 165
+++ +L L I S+ + K+L + N IS +
Sbjct: 95 FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF 150
Score = 73.1 bits (180), Expect = 1e-15
Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 4/121 (3%)
Query: 53 KLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNMI 110
L L+L + + ++ + L+ L L N L + A+ L I
Sbjct: 58 NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117
Query: 111 AKISDN-IGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFH 168
+ I + N +L L + +N I S+ + L +D +N I Y+ + S
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177
Query: 169 Q 169
Q
Sbjct: 178 Q 178
Score = 70.8 bits (174), Expect = 7e-15
Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMI- 110
L+ L+L +L LP + L+ L +L L+ N+ E + + + P L ++ N
Sbjct: 279 GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 111 AKISDN-IGNLTSLLVLNISNNKIESLPENIG---YMKSLTHIDASHNTISYVPWKLFSK 166
++ + NL +L L++S++ IE+ + L ++ S+N + + F +
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398
Query: 167 FHQ 169
Q
Sbjct: 399 CPQ 401
Score = 69.3 bits (170), Expect = 2e-14
Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 6/126 (4%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINE----AVYDLPHLYKFNVSN 107
LKVLNL ++ L +++ L L L L N N ++ L L +S
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485
Query: 108 NMIAKISDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
++ I + +L + +++S+N++ S +++ + N IS + L
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPI 545
Query: 167 FHQNRS 172
Q R+
Sbjct: 546 LSQQRT 551
Score = 68.5 bits (168), Expect = 4e-14
Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 7/127 (5%)
Query: 53 KLKVLNLQYNNLKGLP---DEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNN 108
L+ L+L +++++ ++R+L++L L L+ N+ + EA + P L +++
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410
Query: 109 MIAKISDN--IGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFS 165
+ NL L VLN+S++ ++ E + + +L H++ N + +
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470
Query: 166 KFHQNRS 172
Sbjct: 471 SLQTLGR 477
Score = 67.7 bits (166), Expect = 8e-14
Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 6/122 (4%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMI 110
+L L L N L + + L L + I +++ L + +N I
Sbjct: 82 RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141
Query: 111 AKISDN-IGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHI--DASHNTISYVPWKLFSK 166
+ I L VL+ NN I L + + ++ T++ + + N I+ + F
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS 201
Query: 167 FH 168
Sbjct: 202 AV 203
Score = 63.1 bits (154), Expect = 3e-12
Identities = 18/112 (16%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 51 VLKLKVLNLQYNNLKGLPDEI---RHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVS 106
+ L + + + + + + ++ + L + I+ + L + +++
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286
Query: 107 NNMIAKISDNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTIS 157
++++ + L++L L +S NK E+L + SLTH+ NT
Sbjct: 287 ATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Score = 62.7 bits (153), Expect = 4e-12
Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 7/125 (5%)
Query: 52 LKLKVLNLQYNNLKGLPDE---IRHLTNLNELALNNNQLEMINEAVYD---LPHLYKFNV 105
+ LN + + + +L + E I+ AV++ + N+
Sbjct: 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261
Query: 106 SNNMIAKISDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLF 164
+ IS N + L L+++ + LP + + +L + S N +
Sbjct: 262 QKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA 321
Query: 165 SKFHQ 169
S F
Sbjct: 322 SNFPS 326
Score = 58.1 bits (141), Expect = 2e-10
Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 7/120 (5%)
Query: 52 LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI---NEAVYDLPHLYKFNVSNN 108
LNL N++ G+ L Q ++ + L+ +
Sbjct: 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238
Query: 109 MIAKISDNI---GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLF 164
IS + S+ +N+ + ++ N L +D + +S +P L
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV 298
Score = 54.3 bits (131), Expect = 3e-09
Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
+L++L L + +L + L +N + L++N+L + N+++N I+
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHIS 536
Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPENI 140
I ++ L+ +N+ N ++ NI
Sbjct: 537 IILPSLLPILSQQRTINLRQNPLDCTCSNI 566
Score = 46.9 bits (112), Expect = 1e-06
Identities = 16/112 (14%), Positives = 34/112 (30%), Gaps = 25/112 (22%)
Query: 55 KVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKIS 114
K N + L +P + + L + N L I +
Sbjct: 15 KTYNCENLGLNEIPGTL--PNSTECLEFSFNVLPTI----------------------QN 50
Query: 115 DNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFS 165
L +L L+++ +I + E+ L + + N + ++ S
Sbjct: 51 TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS 102
Score = 33.8 bits (78), Expect = 0.024
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 103 FNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPW 161
+N N + +I + S L S N + ++ + +LT +D + I ++
Sbjct: 17 YNCENLGLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74
Query: 162 KLFSKFHQ 169
F H+
Sbjct: 75 DTFQSQHR 82
Score = 31.1 bits (71), Expect = 0.20
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 52 LKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLE 88
LK LNL N++ + P + L+ + L N L+
Sbjct: 523 LKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 74.4 bits (183), Expect = 4e-16
Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 8/122 (6%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI----NEAVYDLPHLYKFNVSN 107
K+K + ++ + + +P +HL +L L L+ N + + P L +S
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370
Query: 108 NMIAKISDNIG---NLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLF 164
N + + L +L L+IS N +P++ + + + ++ S I V +
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP 430
Query: 165 SK 166
Sbjct: 431 QT 432
Score = 72.8 bits (179), Expect = 1e-15
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 6/117 (5%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
L L++ N +PD + + L L++ + ++ + L +VSNN +
Sbjct: 388 NLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDS 445
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
S L L L IS NK+++LP+ L + S N + VP +F +
Sbjct: 446 FSLF---LPRLQELYISRNKLKTLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTS 498
Score = 71.3 bits (175), Expect = 4e-15
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 8/117 (6%)
Query: 53 KLKVLNLQYNNLKGLPDE---IRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNM 109
L+ L L N+L+ + + L NL L ++ N + ++ + N+S+
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG 421
Query: 110 IAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
I + I +L VL++SNN ++S + L + S N + +P
Sbjct: 422 IRVVKTCI--PQTLEVLDVSNNNLDSFSLF---LPRLQELYISRNKLKTLPDASLFP 473
Score = 69.4 bits (170), Expect = 2e-14
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
K++ LNL ++ + I L L ++NN L+ + LP L + +S N +
Sbjct: 411 KMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFSL---FLPRLQELYISRNKLKT 465
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHN 154
+ D LLV+ IS N+++S+P+ I + SL I N
Sbjct: 466 LPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
Score = 67.8 bits (166), Expect = 6e-14
Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 6/123 (4%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
L+VL L+ + + + + L +L L L++N L ++ + + L L N+ N
Sbjct: 51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110
Query: 111 AKISDN--IGNLTSLLVLNIS-NNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSK 166
+ NLT+L L I + + SL ++ ++ +
Sbjct: 111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170
Query: 167 FHQ 169
Sbjct: 171 IRD 173
Score = 67.8 bits (166), Expect = 6e-14
Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 6/131 (4%)
Query: 53 KLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMI--NEAVYDLPHLYKFNVS-NN 108
L+ L+L N+L L L++L L L N + + +L +L +
Sbjct: 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134
Query: 109 MIAKISDN-IGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSK 166
++I LTSL L I + + + ++ + H+ + +++
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194
Query: 167 FHQNRSSRFGC 177
R
Sbjct: 195 LSSVRYLELRD 205
Score = 64.0 bits (156), Expect = 1e-12
Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 52 LKLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNM 109
+ ++ L++ L + L + + + N+++ ++ L L ++S N+
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345
Query: 110 IAKI----SDNIGNLTSLLVLNISNNKIESLPENIGY---MKSLTHIDASHNTISYVP 160
+ + S G SL L +S N + S+ + +K+LT +D S NT +P
Sbjct: 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP 403
Score = 55.1 bits (133), Expect = 2e-09
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
L+VL++ NNL L L EL ++ N+L+ + +A P L +S N +
Sbjct: 432 TLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPDASL-FPVLLVMKISRNQLKS 487
Query: 113 ISDNI-GNLTSLLVLNISNNKIESLPENIGYMK 144
+ D I LTSL + + N + I Y+
Sbjct: 488 VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 520
Score = 50.9 bits (122), Expect = 5e-08
Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 15/122 (12%)
Query: 54 LKVLNLQYNNLKGLPDEIR---------HLTNLNELALNNNQLEMINEAVYD-LPHLYKF 103
++ + N L + L + L VY L + +
Sbjct: 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315
Query: 104 NVSNNMIAKISDNIG-NLTSLLVLNISNNKIESL----PENIGYMKSLTHIDASHNTISY 158
V N+ + + + +L SL L++S N + G SL + S N +
Sbjct: 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS 375
Query: 159 VP 160
+
Sbjct: 376 MQ 377
Score = 48.6 bits (116), Expect = 3e-07
Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 11/130 (8%)
Query: 54 LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD---------LPHLYKFN 104
+ + +N L L I L+ + N L N + D + + +
Sbjct: 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292
Query: 105 VSNNMIAKISDNI-GNLTSLLVLNISNNKIESLPENIG-YMKSLTHIDASHNTISYVPWK 162
+ + + L + + + N+K+ +P + ++KSL +D S N + K
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK 352
Query: 163 LFSKFHQNRS 172
+ S
Sbjct: 353 NSACKGAWPS 362
Score = 47.8 bits (114), Expect = 5e-07
Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 25/114 (21%)
Query: 54 LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
V + + + +P + + L L+ N++ I
Sbjct: 7 SGVCDGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGD------------------- 45
Query: 114 SDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
+ +L VL + +++I ++ + + SL H+D S N +S + F
Sbjct: 46 ---LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96
Score = 43.2 bits (102), Expect = 2e-05
Identities = 15/139 (10%), Positives = 41/139 (29%), Gaps = 22/139 (15%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKF-------- 103
+ L L + L + L+++ L L + L + + +
Sbjct: 173 DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232
Query: 104 ----NVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIG---------YMKSLTHID 150
+ S N + K+ I L+ + + + N + + ++ +
Sbjct: 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292
Query: 151 ASHNTISYVPWKLFSKFHQ 169
+ Y ++S +
Sbjct: 293 IPQFYLFYDLSTVYSLLEK 311
Score = 33.9 bits (78), Expect = 0.021
Identities = 9/67 (13%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 104 NVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWK 162
+ + I + ++ L++S NKI + + +L + + I+ +
Sbjct: 11 DGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68
Query: 163 LFSKFHQ 169
F
Sbjct: 69 AFYSLGS 75
Score = 28.9 bits (65), Expect = 1.1
Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 119 NLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
+ + V + + S+P + ++ +D S N I+Y+
Sbjct: 3 SCDASGVCDGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACAN 51
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 73.1 bits (180), Expect = 4e-16
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
L L L N LK LP + LT L L+L N+L+ + + V+D L L + + NN +
Sbjct: 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
++ + LT L L + NN+++ +PE ++ L + N PW
Sbjct: 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN-----PW 217
Score = 71.9 bits (177), Expect = 1e-15
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
L+ L + N L+ LP + L NL EL L+ NQL+ + V+D L L ++ N +
Sbjct: 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLF 164
+ + LTSL L + NN+++ +PE + L + +N + VP F
Sbjct: 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201
Score = 69.6 bits (171), Expect = 7e-15
Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
KL++L L N L+ LP I + L NL L + +N+L+ + V+D L +L + + N +
Sbjct: 62 KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
+ + +LT L L++ N+++SLP+ + + SL + +N + VP F K
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK 179
Score = 68.5 bits (168), Expect = 2e-14
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 54 LKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIA 111
K L+LQ N L LP + LT L L LN+N+L+ + ++ L +L V++N +
Sbjct: 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98
Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
+ + L +L L + N+++SLP + + LT++ +N + +P +F K
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155
Score = 56.1 bits (136), Expect = 4e-10
Identities = 22/117 (18%), Positives = 51/117 (43%), Gaps = 5/117 (4%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIA 111
++ L +P I + +L L +N+L + + L L +++N +
Sbjct: 17 NKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74
Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
+ I L +L L +++NK+++LP + + +L + N + +P ++F
Sbjct: 75 TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 71.6 bits (176), Expect = 6e-16
Identities = 22/113 (19%), Positives = 59/113 (52%), Gaps = 9/113 (7%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
KL+ ++L N + L + + L +LN L L N++ + +++++ L L ++ N I
Sbjct: 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI 116
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
+ + +L +L +L++ +NK++++ + ++++ + + N P+
Sbjct: 117 NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN-----PF 164
Score = 71.2 bits (175), Expect = 9e-16
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 4/116 (3%)
Query: 55 KVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIAK 112
+ L+ N +K +P L + L+NNQ+ + + L L + N I +
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 113 ISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
+ ++ L SL +L ++ NKI L + + +L + N + + FS
Sbjct: 95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150
Score = 27.7 bits (62), Expect = 2.0
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 121 TSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
++ + + N I+ +P K L ID S+N IS + F
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG 78
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 73.6 bits (181), Expect = 6e-16
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
L+ L L N + + D LT+L +L L+ N L I+ +++ L L ++S N I
Sbjct: 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
+ D L +L L + N+++S+P+ I + SL I N PW
Sbjct: 360 RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN-----PW 407
Score = 65.5 bits (160), Expect = 3e-13
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 9/122 (7%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLE--MINEAVYD-LPHLYKFNVSNN 108
L +L L YN L L NL L L L+ +++ + L L + +N
Sbjct: 80 SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139
Query: 109 MIAKISDNI--GNLTSLLVLNISNNKIESLPENIGYM---KSLTHIDASHNTISYVPWKL 163
I KI N+ VL+++ NK++S+ E K T + S T+ +
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199
Query: 164 FS 165
Sbjct: 200 LG 201
Score = 61.7 bits (150), Expect = 9e-12
Identities = 25/123 (20%), Positives = 52/123 (42%), Gaps = 8/123 (6%)
Query: 53 KLKVLNLQYNNLKGL--PDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNM 109
L+ L ++ + + R L++L L L+ NQ + ++ L +L ++
Sbjct: 55 DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCN 114
Query: 110 I--AKISDNI-GNLTSLLVLNISNNKIESLPENI--GYMKSLTHIDASHNTISYVPWKLF 164
+ A +S N LTSL +L + +N I+ + M+ +D + N + + +
Sbjct: 115 LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174
Query: 165 SKF 167
F
Sbjct: 175 LNF 177
Score = 61.3 bits (149), Expect = 1e-11
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 6/122 (4%)
Query: 54 LKVLNLQYNNLKGLPDEIRH---LTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNM 109
+ + N K + + + L+ +++ + ++V+ L + ++ N
Sbjct: 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310
Query: 110 IAKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKF 167
I KI DN LT LL LN+S N + S+ + + L +D S+N I + + F
Sbjct: 311 INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370
Query: 168 HQ 169
Sbjct: 371 PN 372
Score = 60.1 bits (146), Expect = 3e-11
Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 7/114 (6%)
Query: 54 LKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMI--NEAVYDLPHLYKFNVSNNMI 110
+ ++L N++ L + L +L L + ++ N L L + N
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 111 AKISDNI-GNLTSLLVLNISNNKIES--LPENI-GYMKSLTHIDASHNTISYVP 160
++ L +L VL ++ ++ L N + SL + N I +
Sbjct: 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145
Score = 49.0 bits (117), Expect = 2e-07
Identities = 20/133 (15%), Positives = 48/133 (36%), Gaps = 19/133 (14%)
Query: 53 KLKVLNLQYNNLKGLPDEIRH----LTNLNELALNN----------NQLEMINEAVYD-- 96
+ L+L N K + T + L L+N + + +
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL 272
Query: 97 -LPHLYKFNVSNNMIAKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASH 153
+ ++S + I + ++ + T L L ++ N+I + +N + L ++ S
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332
Query: 154 NTISYVPWKLFSK 166
N + + ++F
Sbjct: 333 NFLGSIDSRMFEN 345
Score = 26.6 bits (59), Expect = 5.3
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 121 TSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTIS 157
+ +++S N I L E ++ L + T
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG 67
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 73.4 bits (181), Expect = 9e-16
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 53 KLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVYDLPHLYKFNVSNNMI 110
KL+ L L N L+G +P E+ ++ L L L+ N L I + + +L ++SNN +
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502
Query: 111 A-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTIS 157
+I IG L +L +L +SNN ++P +G +SL +D + N +
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551
Score = 70.3 bits (173), Expect = 1e-14
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 54 LKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVYDLPHLYKFNVSNNMI- 110
L+ L LQ N G +P + + + L L L+ N L I ++ L L + NM+
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 111 AKISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTIS 157
+I + + +L L + N + +P + +L I S+N ++
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503
Score = 65.3 bits (160), Expect = 6e-13
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 53 KLKVLNLQYNNLKG-LPDEIRHLT-NLNELALNNNQL------EMINEAVYDLPHLYKFN 104
LKVL+L +N G LP+ + +L+ +L L L++N + L +
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ---NPKNTLQELY 400
Query: 105 VSNNMIA-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTIS 157
+ NN KI + N + L+ L++S N + ++P ++G + L + N +
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Score = 61.1 bits (149), Expect = 1e-11
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 53 KLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQL--EMINEAVYDLPHLYKFNVSNNM 109
+LK+LN+ N G +P L +L L+L N+ E+ + L ++S N
Sbjct: 248 ELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305
Query: 110 IA-KISDNIGNLTSLLVLNISNNKIE-SLP-ENIGYMKSLTHIDASHNTIS 157
+ G+ + L L +S+N LP + + M+ L +D S N S
Sbjct: 306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356
Score = 60.7 bits (148), Expect = 2e-11
Identities = 22/114 (19%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 48 SEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVYDLPHLYKFNV 105
++ + K +G +++ L+ N + + + + + ++
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639
Query: 106 SNNMIA-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTIS 157
S NM++ I IG++ L +LN+ +N I S+P+ +G ++ L +D S N +
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Score = 60.7 bits (148), Expect = 2e-11
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 53 KLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVYDLPHLYKFNVSNNMI 110
L+ L L +N+L G +P + + TNLN ++L+NN+L I + + L +L +SNN
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 111 A-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTI 156
+ I +G+ SL+ L+++ N ++P + +
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Score = 60.3 bits (147), Expect = 2e-11
Identities = 28/109 (25%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 53 KLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVYDLPHLYKFNVSNNMI 110
N+ G + ++ L ++ N L I + + +P+L+ N+ +N I
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668
Query: 111 A-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTIS 157
+ I D +G+L L +L++S+NK++ +P+ + + LT ID S+N +S
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
Score = 59.5 bits (145), Expect = 5e-11
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 38 TGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLEMINEAVYD 96
+G+ S+ +LK L + N + G + + NL L +++N + D
Sbjct: 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGD 221
Query: 97 LPHLYKFNVSNNMIA-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHN 154
L ++S N ++ S I T L +LNIS+N+ +P +KSL ++ + N
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAEN 279
Query: 155 TIS 157
+
Sbjct: 280 KFT 282
Score = 59.5 bits (145), Expect = 5e-11
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLE-MINEAVYDLPHLYKFNVSNNMIA 111
L+ L++ NN + + L L ++ N+L + A+ L N+S+N
Sbjct: 201 NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN--- 257
Query: 112 KISDNI--GNLTSLLVLNISNNKIE-SLPENI-GYMKSLTHIDASHNTIS 157
+ I L SL L+++ NK +P+ + G +LT +D S N
Sbjct: 258 QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307
Score = 55.7 bits (135), Expect = 1e-09
Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 26/131 (19%)
Query: 53 KLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE---------------------MI 90
L +L L N+ G +P E+ +L L LN N
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Query: 91 NEAVYDLPHLYKFNVSNNMIA---KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSL 146
+ + + + + N++ S+ + L++ NI++ S+
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634
Query: 147 THIDASHNTIS 157
+D S+N +S
Sbjct: 635 MFLDMSYNMLS 645
Score = 54.9 bits (133), Expect = 2e-09
Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 11/113 (9%)
Query: 53 KLKVLNLQYNNLKGL--PDEIRHLTNLNELALNNNQLE----MINEAVYDLPHLYKFNVS 106
LK LN+ N L L +L L L+ N + + L +S
Sbjct: 127 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS 186
Query: 107 NNMIA-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTIS 157
N I+ + + +L L++S+N +P +G +L H+D S N +S
Sbjct: 187 GNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 236
Score = 52.2 bits (126), Expect = 2e-08
Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 6/109 (5%)
Query: 53 KLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVYDLPHLYKFNVSNNMI 110
L ++L N L G +P I L NL L L+NN I + D L +++ N+
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550
Query: 111 A-KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158
I + + + N K I + N + +
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAGKR---YVYIKNDGMKKECHGAGNLLEF 596
Score = 49.9 bits (120), Expect = 1e-07
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 54 LKVLNLQYNNLKG----LPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNM 109
+ ++L L + + LT L L L+N+ + L ++S N
Sbjct: 52 VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111
Query: 110 IAK---ISDNIGNLTSLLVLNISNNKIE-SLPENIGY-MKSLTHIDASHNTIS 157
++ ++G+ + L LN+S+N ++ + G + SL +D S N+IS
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164
Score = 40.7 bits (96), Expect = 1e-04
Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 72 RHLTNLNELALN-NNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISN 130
+T+++ + N ++ ++ L L +SN+ I SL L++S
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109
Query: 131 NKIE---SLPENIGYMKSLTHIDASHNTIS 157
N + + ++G L ++ S NT+
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 139
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 72.3 bits (178), Expect = 2e-15
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
KL L L N + + + LT L L LN NQLE I + +L +L + N I+
Sbjct: 266 KLTELKLGANQISNIS-PLAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNISD 323
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
IS + +LT L L NNK+ + + + ++ + A HN IS +
Sbjct: 324 IS-PVSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLT 369
Score = 71.9 bits (177), Expect = 3e-15
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
L L L N L+ + I +L NL L L N + I V L L + NN ++
Sbjct: 288 ALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSD 345
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
+S ++ NLT++ L+ +N+I L + + +T + + + P +
Sbjct: 346 VS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNYKAN 397
Score = 71.1 bits (175), Expect = 5e-15
Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
L+ L N + + + LTNL+EL+LN NQL+ I + L +L +++NN I+
Sbjct: 200 NLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISN 257
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
++ + LT L L + N+I ++ + + +LT+++ + N + +
Sbjct: 258 LA-PLSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQLEDIS 303
Score = 70.4 bits (173), Expect = 8e-15
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
L+ L++ N + + + LTNL L NNQ+ I + L +L + +++ N +
Sbjct: 178 TLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQLKD 235
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
I + +LT+L L+++NN+I +L + + LT + N IS +
Sbjct: 236 IG-TLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNIS 281
Score = 66.1 bits (162), Expect = 3e-13
Identities = 25/108 (23%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
L L L N + + + LT+L +L+ N ++ + +L L + ++S+N ++
Sbjct: 135 NLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSD 191
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
IS + LT+L L +NN+I + +G + +L + + N + +
Sbjct: 192 IS-VLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKDIG 237
Score = 65.4 bits (160), Expect = 4e-13
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
L +N N L + +++LT L ++ +NNNQ+ I + +L +L + NN I
Sbjct: 69 NLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLFNNQITD 126
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
I + NLT+L L +S+N I + + + SL + + P
Sbjct: 127 ID-PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQVTDLKP 172
Score = 63.4 bits (155), Expect = 2e-12
Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
KL+ L N + + + +LTN+N L+ +NQ+ + + +L + + +++
Sbjct: 332 KLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
N S+ + P I S T D + N SY
Sbjct: 390 APVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTN 437
Score = 54.2 bits (131), Expect = 4e-09
Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 8/112 (7%)
Query: 50 PVLKLKVL-NLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNN 108
P+ + + N + L + L + + DL +
Sbjct: 2 PLGSATITQDTPINQIFTDT----ALAEKMKTVLGKTNVTDT-VSQTDLDQVTTLQADRL 56
Query: 109 MIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
I I + L +L +N SNN++ + + + L I ++N I+ +
Sbjct: 57 GIKSID-GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADIT 106
Score = 50.7 bits (122), Expect = 5e-08
Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 1/105 (0%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+ L+ +N + L + +LT + +L LN+ + +
Sbjct: 354 NINWLSAGHNQISDLT-PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
I + S +I+ N E I T S
Sbjct: 413 APATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFS 457
Score = 31.1 bits (71), Expect = 0.17
Identities = 7/57 (12%), Positives = 11/57 (19%)
Query: 52 LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNN 108
+ + P I + E + N NE Y
Sbjct: 398 VSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTT 454
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 72.4 bits (178), Expect = 2e-15
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%)
Query: 53 KLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQL-EMINEAVYDLPHLYKFNVSNNMI 110
+L+VL+L ++ + + L++L+ L L N + + A L L K +
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 111 AKISDN-IGNLTSLLVLNISNNKIESL--PENIGYMKSLTHIDASHNTISYVPWKLFSKF 167
A + + IG+L +L LN+++N I+S PE + +L H+D S N I +
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Query: 168 HQ 169
HQ
Sbjct: 173 HQ 174
Score = 69.3 bits (170), Expect = 2e-14
Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Query: 53 KLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLE--MINEAVYDLPHLYKFNVSNNM 109
L L++ + + + L++L L + N + + + +L +L ++S
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
Query: 110 IAKIS-DNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKF 167
+ ++S +L+SL VLN+S+N SL + SL +D S N I + F
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541
Query: 168 HQN 170
+
Sbjct: 542 PSS 544
Score = 65.0 bits (159), Expect = 6e-13
Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 7/124 (5%)
Query: 53 KLKVLNLQYNNLKGL---PDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNM 109
L+ L+L N L T+L L L+ N + ++ L L + ++
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407
Query: 110 IAKISDN--IGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISY-VPWKLFS 165
+ ++S+ +L +L+ L+IS+ + SL + + N+ +F+
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467
Query: 166 KFHQ 169
+
Sbjct: 468 ELRN 471
Score = 59.3 bits (144), Expect = 6e-11
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+ L L P L +L L +N+ V DLP L ++S N ++
Sbjct: 305 GWQHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSF 361
Query: 113 ---ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
S + TSL L++S N + ++ N ++ L H+D H+ +
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 409
Score = 50.8 bits (122), Expect = 5e-08
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 53 KLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINEAVY-DLPHLYKFNVSNNMI 110
L L+L L+ L P L++L L +++N ++ Y L L + S N I
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
Query: 111 AKISDNI--GNLTSLLVLNISNNKI 133
+SL LN++ N
Sbjct: 531 MTSKKQELQHFPSSLAFLNLTQNDF 555
Score = 47.3 bits (113), Expect = 7e-07
Identities = 20/129 (15%), Positives = 38/129 (29%), Gaps = 14/129 (10%)
Query: 52 LKLKVLNLQYNNLKG--LPDEIRHLTNLNELALNNNQLEMINEAVYD----LPHLYKFNV 105
++L L L+ N + I+ L L L + L L +
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259
Query: 106 SNNMIAK-------ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158
+A I D LT++ ++ + IE + + Y H++ +
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQ 318
Query: 159 VPWKLFSKF 167
P
Sbjct: 319 FPTLKLKSL 327
Score = 46.2 bits (110), Expect = 2e-06
Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 13/122 (10%)
Query: 52 LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQL--EMINEAVYDLPHL-------YK 102
L L+L N + + L++L L NN ++ + L L +
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236
Query: 103 FNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENI----GYMKSLTHIDASHNTISY 158
F N+ + L +L + ++ ++I + +++ TI
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296
Query: 159 VP 160
V
Sbjct: 297 VK 298
Score = 43.9 bits (104), Expect = 1e-05
Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 25/116 (21%)
Query: 51 VLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMI 110
V+ N +PD + + L L+ N L +
Sbjct: 6 VVPNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHL-------------------- 43
Query: 111 AKISDNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFS 165
S + + L VL++S +I+++ + + L+ + + N I + FS
Sbjct: 44 --GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97
Score = 31.5 bits (72), Expect = 0.13
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
Query: 94 VYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDAS 152
V +P++ + KI DN+ S L++S N + L + L +D S
Sbjct: 4 VEVVPNI-TYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS 60
Query: 153 HNTISYVPWKLFSKFHQ 169
I + +
Sbjct: 61 RCEIQTIEDGAYQSLSH 77
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 72.1 bits (176), Expect = 3e-15
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 43 SNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYK 102
+++ + L L L N +K L ++ L L L+L +N + I + LP L
Sbjct: 78 TDIKPLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLES 135
Query: 103 FNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
+ NN I I+ + LT L L++ +N+I + + + L ++ S N IS
Sbjct: 136 LYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHIS 188
Score = 70.1 bits (171), Expect = 1e-14
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+ L L N L + + +L NL L L+ N+++ + ++ DL L ++ +N I+
Sbjct: 66 NVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNGISD 123
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
I+ + +L L L + NNKI + + + L + N IS +
Sbjct: 124 IN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV 169
Score = 70.1 bits (171), Expect = 1e-14
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
KLK L+L++N + + + HL L L L NN++ I + L L ++ +N I+
Sbjct: 110 KLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD 167
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRS 172
I + LT L L +S N I L + +K+L ++ P S +
Sbjct: 168 IV-PLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 225
Query: 173 SR 174
+
Sbjct: 226 VK 227
Score = 65.9 bits (160), Expect = 3e-13
Identities = 24/105 (22%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+ NL+ ++ L +++++ NN+ ++ + + + LP++ K ++ N +
Sbjct: 22 ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTD 79
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
I + NL +L L + NKI+ L ++ +K L + HN IS
Sbjct: 80 IK-PLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNGIS 122
Score = 59.0 bits (142), Expect = 8e-11
Identities = 14/104 (13%), Positives = 36/104 (34%), Gaps = 4/104 (3%)
Query: 54 LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
+ +K + + L + +L + + +N+ I +
Sbjct: 1 MGETITVSTPIKQIFP-DDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSV 58
Query: 114 SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
I L ++ L ++ NK+ + + + +K+L + N I
Sbjct: 59 Q-GIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIK 100
Score = 26.2 bits (57), Expect = 7.5
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Query: 53 KLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMI 110
L VL L P +L N + + L + D K NV ++
Sbjct: 198 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI-ISDDGDYEKPNVKWHLP 255
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 69.3 bits (170), Expect = 4e-15
Identities = 22/113 (19%), Positives = 55/113 (48%), Gaps = 9/113 (7%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
+L+ +N N + + + + +NE+ L +N+LE + ++ L L + +N I
Sbjct: 58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
+ ++ L+S+ +L++ +N+I ++ + SL+ ++ N P+
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN-----PF 165
Score = 65.1 bits (159), Expect = 2e-13
Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 5/116 (4%)
Query: 55 KVLNLQYNNLKGLP--DEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIA 111
L L N L + L L ++ +NN++ I E ++ + + +++N +
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFS 165
+ + L SL L + +N+I + + + S+ + N I+ V F
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150
Score = 27.3 bits (61), Expect = 2.5
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 106 SNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGY--MKSLTHIDASHNTISYVPWKL 163
SN + KI ++I T+ L LN NN+ L + + L I+ S+N I+ +
Sbjct: 19 SNQKLNKIPEHIPQYTAELRLN--NNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA 76
Query: 164 FSK 166
F
Sbjct: 77 FEG 79
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 70.2 bits (172), Expect = 1e-14
Identities = 23/123 (18%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Query: 42 ESNMSQSEPVLKLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINE-AVYDLPH 99
+ N ++ L+L + + L + L +L L L N++ I + A Y L +
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315
Query: 100 LYKFNVSNNMIAKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTIS 157
L N+S N++ ++ + L + +++ N I + + +++ L +D N ++
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
Query: 158 YVP 160
+
Sbjct: 376 TIH 378
Score = 67.1 bits (164), Expect = 1e-13
Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLE---MINEAVYDLPHLYKFNVSNN 108
L++L+L + + L + + L +L EL L L + + +L L + ++S N
Sbjct: 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133
Query: 109 MIAKI--SDNIGNLTSLLVLNISNNKIESLPENI---GYMKSLTHIDASHNTISYVPWKL 163
I + + G L SL ++ S+N+I + E+ K+L+ + N++
Sbjct: 134 QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD 193
Query: 164 FSKFHQN 170
+ K
Sbjct: 194 WGKCMNP 200
Score = 66.8 bits (163), Expect = 2e-13
Identities = 29/143 (20%), Positives = 58/143 (40%), Gaps = 12/143 (8%)
Query: 53 KLKVLNLQYNNLKGLPDE--IRHLTNLNELALNNNQLEMINE------AVYDLPHLYKFN 104
L++L L N + +L +L L N L++ E L HL
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY 486
Query: 105 VSNNMIAKISDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKL 163
+++N + + + +LT+L L++++N++ L N +L +D S N + +
Sbjct: 487 LNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND-LPANLEILDISRNQLLAPNPDV 545
Query: 164 FS--KFHQNRSSRFGCALIMNDF 184
F ++F C ++ F
Sbjct: 546 FVSLSVLDITHNKFICECELSTF 568
Score = 66.8 bits (163), Expect = 2e-13
Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 52 LKLKVLNLQYNNLKGLPDE--IRHLTNLNELALNNNQLEMI--NEAVYDLPHLYKFNVSN 107
L +++L N L+ L + + +L L LN N+ ++ + P L + +
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460
Query: 108 NMIAKI------SDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVP 160
NM+ D L+ L VL +++N + SLP + ++ +L + + N ++ +
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520
Query: 161 WKLFSK 166
Sbjct: 521 HNDLPA 526
Score = 64.1 bits (156), Expect = 1e-12
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 54 LKVLNLQYNNLKGLPDEI---RHLTNLNELALNNNQLEMINEAVY-DLPHLYKFNVSNNM 109
+ ++N+K +++ L L++ + +N V+ L L N++ N
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301
Query: 110 IAKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKF 167
I KI+D L +L VLN+S N + L + + + +ID N I+ + + F
Sbjct: 302 INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361
Query: 168 HQ 169
+
Sbjct: 362 EK 363
Score = 62.1 bits (151), Expect = 8e-12
Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI--NEAVYDLPHLYKFNVSNNM 109
+ L L +N ++ + L L L L + + EA +LP+L ++ ++
Sbjct: 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84
Query: 110 IAKISDNI-GNLTSLLVLNISNNKIESL---PENIGYMKSLTHIDASHNTISYVP 160
I + + L L L + + +K+LT +D S N I +
Sbjct: 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139
Score = 59.4 bits (144), Expect = 6e-11
Identities = 17/154 (11%), Positives = 51/154 (33%), Gaps = 18/154 (11%)
Query: 34 ISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRH-------------LTNLNEL 80
+ S + L++L++ N ++
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245
Query: 81 ALNNNQLEMINEAVYD---LPHLYKFNVSNNMIAKISDNI-GNLTSLLVLNISNNKIESL 136
+ ++ ++ + + ++S+ + ++ + L L VLN++ NKI +
Sbjct: 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305
Query: 137 PENI-GYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
+ + +L ++ S+N + + F +
Sbjct: 306 ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339
Score = 56.4 bits (136), Expect = 6e-10
Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 55 KVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMIA-K 112
++ ++ NL +P + L L L+ N + + + L L + +
Sbjct: 7 RIAFYRFCNLTQVP---QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63
Query: 113 ISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTIS 157
I NL +L +L++ ++KI L + + L + +S
Sbjct: 64 IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLS 110
Score = 56.4 bits (136), Expect = 7e-10
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 9/114 (7%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVY-DLPHLYKFNVSNNMI 110
L+VLNL YN L L L + + L N + +I + + L L ++ +N +
Sbjct: 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374
Query: 111 AKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLF 164
I + S+ + +S NK+ +LP+ + I S N + + F
Sbjct: 375 TTIH----FIPSIPDIFLSGNKLVTLPKIN---LTANLIHLSENRLENLDILYF 421
Score = 47.9 bits (114), Expect = 5e-07
Identities = 20/138 (14%), Positives = 44/138 (31%), Gaps = 24/138 (17%)
Query: 52 LKLKVLNLQYNNLKGLPD-------EIRHLTNLNELALNNNQLEMI-------------N 91
L +L N+L L L ++ N +
Sbjct: 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233
Query: 92 EAVYDLPHLYKFNVSNNMIAKISDNI---GNLTSLLVLNISNNKIESLPENI-GYMKSLT 147
++ H+ + I N +S+ L++S+ + SL + +K L
Sbjct: 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK 293
Query: 148 HIDASHNTISYVPWKLFS 165
++ ++N I+ + + F
Sbjct: 294 VLNLAYNKINKIADEAFY 311
Score = 47.9 bits (114), Expect = 5e-07
Identities = 19/143 (13%), Positives = 40/143 (27%), Gaps = 26/143 (18%)
Query: 53 KLKVLNLQYNNLKGLPDEI---RHLTNLNELALNNNQLEMINEAV-------YDLPHLYK 102
LK ++ N + + + L+ +L N L + L
Sbjct: 149 SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI 208
Query: 103 FNVSNNMIAKISDN-------------IGNLTSLLVLNISNNKIESLPENIGY---MKSL 146
+VS N + ++ + I+ +N S+
Sbjct: 209 LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSV 268
Query: 147 THIDASHNTISYVPWKLFSKFHQ 169
H+D SH + + ++F
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKD 291
Score = 28.6 bits (64), Expect = 1.2
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 125 VLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
+ + +P+ + + + S N I V F Q
Sbjct: 8 IAFYRFCNLTQVPQVL---NTTERLLLSFNYIRTVTASSFPFLEQ 49
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 69.5 bits (170), Expect = 2e-14
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 54 LKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIA 111
K L+L N++ L +I L+ L L L++N++ ++ V+ L +VS+N +
Sbjct: 54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113
Query: 112 KISDNIGNLTSLLVLNISNNKIESLPEN--IGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
IS + SL L++S N + LP G + LT + S + + H
Sbjct: 114 NISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHL 171
Query: 170 N 170
+
Sbjct: 172 S 172
Score = 62.2 bits (151), Expect = 6e-12
Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 28/130 (21%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDL--------------- 97
+L+ L LQ N LK N++ L + L +N YD
Sbjct: 378 RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437
Query: 98 ------------PHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENI-GYMK 144
P + ++ NN I I ++ +L +L LN+++N+++S+P+ + +
Sbjct: 438 NMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLT 497
Query: 145 SLTHIDASHN 154
SL +I N
Sbjct: 498 SLQYIWLHDN 507
Score = 51.8 bits (124), Expect = 2e-08
Identities = 12/113 (10%), Positives = 34/113 (30%), Gaps = 7/113 (6%)
Query: 52 LKLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNM 109
++ + L ++ + ++ L N L L + N
Sbjct: 329 AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388
Query: 110 IAKISDNIGNLTSLLVLNISNNKIESLPENI-----GYMKSLTHIDASHNTIS 157
+ ++ L + + SL + + +S+ ++ S N ++
Sbjct: 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441
Score = 51.4 bits (123), Expect = 3e-08
Identities = 23/108 (21%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 55 KVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIAKI 113
+++ NL +P ++ L+L+ N + + L L +S+N I +
Sbjct: 34 SMVDYSNRNLTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL 91
Query: 114 SDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
++ L L++S+N+++++ M SL H+D S N +P
Sbjct: 92 DFHVFLFNQDLEYLDVSHNRLQNIS--CCPMASLRHLDLSFNDFDVLP 137
Score = 49.5 bits (118), Expect = 1e-07
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 51 VLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNN 108
K+KVL+L N + +P ++ HL L EL + +NQL+ + + V+D L L + +N
Sbjct: 449 PPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 49.1 bits (117), Expect = 2e-07
Identities = 11/117 (9%), Positives = 39/117 (33%), Gaps = 3/117 (2%)
Query: 54 LKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIA 111
L + +++ + + +N L+ + I+ N + N+
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366
Query: 112 KI-SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKF 167
L L L + N +++ + K+++ ++ +++ + + +
Sbjct: 367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423
Score = 41.4 bits (97), Expect = 7e-05
Identities = 20/133 (15%), Positives = 42/133 (31%), Gaps = 10/133 (7%)
Query: 53 KLKVLNLQYNNLKGLPD--EIRHLTNLNELALNNNQLEMINEAVYDLPHLYKF--NVSNN 108
L+ L+L +N+ LP E +LT L L L+ + ++ HL ++ +
Sbjct: 122 SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY 181
Query: 109 MIAKISDNIGNLTSLLVLNISNNKIESLPENIG------YMKSLTHIDASHNTISYVPWK 162
I + + VL++ + + L++I + +
Sbjct: 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF 241
Query: 163 LFSKFHQNRSSRF 175
L
Sbjct: 242 LSELTRGPTLLNV 254
Score = 37.2 bits (86), Expect = 0.002
Identities = 21/168 (12%), Positives = 55/168 (32%), Gaps = 15/168 (8%)
Query: 17 VSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLK-LKVLNLQYNNLKGLPDEIRHL- 74
V + S +A L I + + + M+ + + +LN+ +++ L
Sbjct: 211 VQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF 270
Query: 75 -----TNLNELALNNNQL------EMINEAVYDLPHLYKFNVSNNMIAKISDNIGN-LTS 122
+ L + N + E + L L +V N + + + +
Sbjct: 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330
Query: 123 LLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
+ + +S + + S T ++ + N + ++ S +
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR 378
Score = 29.5 bits (66), Expect = 0.68
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 121 TSLLVLNISNNKIESLPE-NIGYMKSLTHIDASHNTISYVPWKLFSK 166
L++S N I L +I ++ L + SHN I + + +F
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF 98
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 69.0 bits (169), Expect = 2e-14
Identities = 16/128 (12%), Positives = 51/128 (39%), Gaps = 11/128 (8%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
L+ L + ++L+ + + + N++ L L+ Q ++ E D + + + +
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234
Query: 111 AKI---------SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPW 161
++++ + + I++ + + + + + L ++ S N + VP
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD 294
Query: 162 KLFSKFHQ 169
+F +
Sbjct: 295 GIFDRLTS 302
Score = 67.1 bits (164), Expect = 1e-13
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 54 LKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIA 111
+K L+L N + + + + NL L L +N + I E + L L ++S N ++
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPENI--GYMKSLTHIDASHNT-ISYVPWKLFSKF 167
+S + L+SL LN+ N ++L E ++ L + + + + K F+
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173
Query: 168 HQ 169
Sbjct: 174 TF 175
Score = 66.3 bits (162), Expect = 2e-13
Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 16/120 (13%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMIN---------EAVYDLPHLYK 102
+ L L L + +++ L L + L+ + ++
Sbjct: 199 NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258
Query: 103 FNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
+++ + ++ + ++ LL L S N+++S+P+ I + SL I N PW
Sbjct: 259 VKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN-----PW 313
Score = 64.8 bits (158), Expect = 6e-13
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 6/123 (4%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
L+ L L N + + ++ L +L L L+ N L ++ + + L L N+ N
Sbjct: 77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136
Query: 111 AKISDNI--GNLTSLLVLNISNN-KIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
+ + +LT L +L + N + + L ++ + + K
Sbjct: 137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196
Query: 167 FHQ 169
Sbjct: 197 IQN 199
Score = 54.7 bits (132), Expect = 2e-09
Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 56 VLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIAKIS 114
+ +L +P + + L L+NN++ I+ + +L +++N I I
Sbjct: 35 ICKGSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE 92
Query: 115 DNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVP 160
++ +L SL L++S N + +L + + SLT ++ N +
Sbjct: 93 EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLG 140
Score = 49.3 bits (118), Expect = 1e-07
Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 5/98 (5%)
Query: 52 LKLKVLNLQYNNLKGLP----DEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSN 107
L+L+ +L + L + + + + + L + + + + L + S
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286
Query: 108 NMIAKISDNI-GNLTSLLVLNISNNKIESLPENIGYMK 144
N + + D I LTSL + + N + I Y+
Sbjct: 287 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 324
Score = 35.5 bits (82), Expect = 0.006
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 91 NEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHI 149
N+A S+ + I + ++ L++SNN+I + + +L +
Sbjct: 24 NQASLSCDRNGICKGSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQAL 81
Query: 150 DASHNTISYVPWKLFSKFHQ 169
+ N I+ + FS
Sbjct: 82 VLTSNGINTIEEDSFSSLGS 101
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 67.9 bits (167), Expect = 3e-14
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 53 KLKVLNLQYNNLKG---LPDEIRHLTNLNELAL-NNNQLE-MINEAVYDLPHLYKFNVSN 107
++ L+L NL +P + +L LN L + N L I A+ L L+ +++
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 108 NMIA-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTIS 157
++ I D + + +L+ L+ S N + +LP +I + +L I N IS
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Score = 63.7 bits (156), Expect = 1e-12
Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 53 KLKVLNLQYNNLKG-LPDEIRHLTNLNE-LALNNNQLE-MINEAVYDLPHLYKFNVSNNM 109
L + N + G +PD + L + ++ N+L I +L +L ++S NM
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNM 208
Query: 110 IA-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTIS 157
+ S G+ + ++++ N + L + +G K+L +D +N I
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIY 257
Score = 59.1 bits (144), Expect = 5e-11
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 57 LNLQYNNLKG-LPDEIRHLTNLNELALNNNQLEM---INEAVYDLPHLYKFNVS--NNMI 110
+ G L D +N L L+ L I ++ +LP+L + NN++
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90
Query: 111 AKISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTIS 157
I I LT L L I++ + ++P+ + +K+L +D S+N +S
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138
Score = 54.5 bits (132), Expect = 2e-09
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 4/106 (3%)
Query: 52 LKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMI 110
L L ++L N L+G N ++ L N L V +L ++ NN I
Sbjct: 197 LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256
Query: 111 A-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHN 154
+ + L L LN+S N + +P+ G ++ ++N
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN 301
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 67.0 bits (164), Expect = 3e-14
Identities = 38/112 (33%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
LK L L N L LP + LT L L L NQL ++ AV+D L HL + + N +
Sbjct: 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
Query: 111 AKISDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
++ I LT L L + N+++S+P + SLTH N PW
Sbjct: 125 TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN-----PW 171
Score = 60.9 bits (148), Expect = 6e-12
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 55 KVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIAK 112
++L L N + L + L NL EL L +NQL + V+D L L ++ N +
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 113 ISDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLF 164
+ + L L L + NK+ LP I + LTH+ N + +P F
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAF 155
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 67.8 bits (166), Expect = 4e-14
Identities = 27/114 (23%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
L+VL L N + + + LTNL L++ N Q+ + + +L L +N I+
Sbjct: 130 NLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISD 187
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
IS + +L +L+ +++ NN+I + + +L + ++ TI+ P +
Sbjct: 188 IS-PLASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQTITNQPVFYNNN 239
Score = 67.8 bits (166), Expect = 5e-14
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+K L+L + + + L+NL L L+ NQ+ I + L +L ++ N ++
Sbjct: 108 SIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSD 165
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
++ + NL+ L L +NKI + + + +L + +N IS V
Sbjct: 166 LT-PLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVS 211
Score = 66.3 bits (162), Expect = 2e-13
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
K+ L L N LK + I L ++ L L + Q+ + + L +L + N I
Sbjct: 86 KITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITN 143
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
IS + LT+L L+I N ++ L + + LT + A N IS +
Sbjct: 144 IS-PLAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISDIS 189
Score = 61.2 bits (149), Expect = 8e-12
Identities = 20/105 (19%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+ +N+ L + L+ + I E V L +L + +N I
Sbjct: 20 NAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITD 77
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
++ + NLT + L +S N ++++ I ++S+ +D + I+
Sbjct: 78 LA-PLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQIT 120
Score = 51.6 bits (124), Expect = 2e-08
Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 7/100 (7%)
Query: 58 NLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNI 117
N + P L N ++A + + DL + + + I +
Sbjct: 6 PTAINVIFPDP----ALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIE-GV 59
Query: 118 GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
L +L+ L + +N+I L + + +T ++ S N +
Sbjct: 60 QYLNNLIGLELKDNQITDL-APLKNLTKITELELSGNPLK 98
Score = 29.7 bits (67), Expect = 0.51
Identities = 3/54 (5%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 104 NVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
+++ + L + + + + + + +T + A ++
Sbjct: 2 SITQPTAINVIFPDPALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVT 54
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 67.8 bits (166), Expect = 4e-14
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
KLK L+L++N + + + HL L L L NN++ I + L L ++ +N I+
Sbjct: 113 KLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD 170
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRS 172
I + LT L L +S N I L + +K+L ++ P S +
Sbjct: 171 IV-PLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228
Score = 66.6 bits (163), Expect = 8e-14
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
L L L N +K L ++ L L L+L +N + I + LP L + NN I
Sbjct: 91 NLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITD 148
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
I+ + LT L L++ +N+I + + + L ++ S N IS
Sbjct: 149 IT-VLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHIS 191
Score = 60.1 bits (146), Expect = 2e-11
Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+ NL+ ++ L +++++ NN+ ++ + + + LP++ K ++ N +
Sbjct: 25 ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTD 82
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
I + NL +L L + NK++ L ++ +K L + HN IS
Sbjct: 83 IK-PLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGIS 125
Score = 51.6 bits (124), Expect = 2e-08
Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 71 IRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISN 130
+ L + +L + + +N+ I + I L ++ L ++
Sbjct: 20 DDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNG 77
Query: 131 NKIESLPENIGYMKSLTHIDASHNTIS 157
NK+ + + + +K+L + N +
Sbjct: 78 NKLTDI-KPLANLKNLGWLFLDENKVK 103
Score = 47.4 bits (113), Expect = 5e-07
Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 4/109 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
KL L+L+ N + + + LT L L L+ N + + A+ L +L + +
Sbjct: 157 KLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLN 214
Query: 113 ISDN-IGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
N NL + ++ + + PE I + + +
Sbjct: 215 KPINHQSNLVVPNTVKNTDGSLVT-PEIISDDGDYEKPNVKWHLPEFTN 262
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 66.7 bits (162), Expect = 1e-13
Identities = 21/126 (16%), Positives = 40/126 (31%), Gaps = 9/126 (7%)
Query: 62 NNLKGLPDEIRHLTNLNELAL-NNNQLEMI-NEAVYDLPHLYKFNVSNNMIAKISDNI-G 118
+ + NL EL + N L+ + + L L + + + ++ +
Sbjct: 18 DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH 77
Query: 119 NLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN------TISYVPWKLFSKFHQNRS 172
L LN+S N +ESL SL + S N + ++
Sbjct: 78 FTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPE 137
Query: 173 SRFGCA 178
+ C
Sbjct: 138 QKLQCH 143
Score = 43.2 bits (101), Expect = 1e-05
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNN 108
+L+ L + + L+ + + L+ L L+ N LE ++ L + +S N
Sbjct: 57 ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113
Score = 33.9 bits (77), Expect = 0.021
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQL 87
+L LNL +N L+ L + +L EL L+ N L
Sbjct: 81 RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115
Score = 27.0 bits (59), Expect = 4.0
Identities = 3/41 (7%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 126 LNISNNKIESLPENIGYMKSLTHIDASHN-TISYVPWKLFS 165
L + + ++ ++LT + + + ++ +
Sbjct: 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLR 53
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 64.6 bits (158), Expect = 2e-13
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 55 KVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIAKI 113
L L N +P E+ + +L + L+NN++ ++ + + L +S N + I
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 114 SDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
L SL +L++ N I +PE + +L+H+ N P
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN-----PL 138
Score = 46.9 bits (112), Expect = 4e-07
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD----LPHLYKFN 104
+L L L YN L+ +P L +L L+L+ N + ++ E ++ L HL
Sbjct: 79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135
Score = 28.4 bits (64), Expect = 1.2
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 125 VLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
L + N+ +P+ + K LT ID S+N IS + + FS
Sbjct: 35 ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSN 76
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 66.4 bits (162), Expect = 2e-13
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 54 LKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIA 111
+LN+ N + L I L+ L L +++N+++ ++ +V+ L ++S+N +
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82
Query: 112 KISDNIGNLTSLLVLNISNNKIESLPEN--IGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
KIS +L L++S N ++LP G M L + S + + +
Sbjct: 83 KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNI 140
Query: 170 NR 171
++
Sbjct: 141 SK 142
Score = 59.9 bits (145), Expect = 3e-11
Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIR--HLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMI 110
L+ L++ N++ + +L L +++N L P + ++ +N I
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKI 433
Query: 111 AKISDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHN 154
I + L +L LN+++N+++S+P+ I + SL I N
Sbjct: 434 KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 59.5 bits (144), Expect = 5e-11
Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 8/123 (6%)
Query: 53 KLKVLNLQYNNLKGLPDEIR---HLTNLNELALNNNQLEMI--NEAVYDLPHLYKFNVSN 107
+L+ L LQ N LK L + +L +L ++ N + L N+S+
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408
Query: 108 NMIAKISDNIGNLTSLL-VLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
N++ L + VL++ +NKI+S+P+ + +++L ++ + N + VP +F +
Sbjct: 409 NILTDTIF--RCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDR 466
Query: 167 FHQ 169
Sbjct: 467 LTS 469
Score = 55.6 bits (134), Expect = 1e-09
Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
L + + + I +N+N + M++ + + SNN++
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336
Query: 111 AKI-SDNIGNLTSLLVLNISNNKIESLPENIGY---MKSLTHIDASHNTISYVP 160
+N G+LT L L + N+++ L + MKSL +D S N++SY
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390
Score = 54.1 bits (130), Expect = 3e-09
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
KL++L + +N ++ L + + L L L++N+L I+ + +L ++S N
Sbjct: 46 KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC--HPTVNLKHLDLSFNAFD 103
Query: 112 KISDN--IGNLTSLLVLNISNNKIESLP 137
+ GN++ L L +S +E
Sbjct: 104 ALPICKEFGNMSQLKFLGLSTTHLEKSS 131
Score = 44.5 bits (105), Expect = 7e-06
Identities = 19/135 (14%), Positives = 43/135 (31%), Gaps = 3/135 (2%)
Query: 53 KLKVLNLQYNNLKGLPD--EIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMI 110
LK L+L +N LP E +++ L L L+ LE + ++ K +
Sbjct: 91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET 150
Query: 111 AKISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
++ L ++ I + T + + I V +
Sbjct: 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210
Query: 170 NRSSRFGCALIMNDF 184
+ ++ +++
Sbjct: 211 SILAKLQTNPKLSNL 225
Score = 36.4 bits (84), Expect = 0.004
Identities = 19/156 (12%), Positives = 52/156 (33%), Gaps = 14/156 (8%)
Query: 28 LLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHL------TNLNELA 81
L + D ++ K+ NL NN++ + + T + +
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253
Query: 82 LNNNQL------EMINEAVYDLPHLYKFNVSNNMIAKISDNI-GNLTSLLVLNISNNKIE 134
++N +L + + L L V +++ I +++ + N + +
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313
Query: 135 SLPENI-GYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
+ + H+D S+N ++ ++ +
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349
Score = 32.5 bits (74), Expect = 0.057
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 104 NVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWK 162
+ S N + + ++ +LNIS N I L + I + L + SHN I Y+
Sbjct: 6 DRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS 63
Query: 163 LFSK 166
+F
Sbjct: 64 VFKF 67
Score = 27.5 bits (61), Expect = 2.9
Identities = 8/44 (18%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 124 LVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKF 167
+++ S N + +P+++ + T ++ S N IS +
Sbjct: 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSL 44
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 65.1 bits (159), Expect = 3e-13
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
KL LNL YN L+ L + LT L L L NNQL + V+D L L K + N +
Sbjct: 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLF 164
+ + LT L L ++ N+++S+P + +L + S N + VP F
Sbjct: 120 KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Score = 65.1 bits (159), Expect = 3e-13
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
+L L L N L LP + HLT L++L L NQL+ + V+D L L + ++ N +
Sbjct: 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
I LT+L L++S N+++S+P + L I N +
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN-----QF 191
Score = 32.7 bits (75), Expect = 0.047
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 107 NNMIAKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLF 164
+ +A +SD LT L LN+ N++++L + + L + ++N ++ +P +F
Sbjct: 44 STGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVF 103
Query: 165 SK 166
Sbjct: 104 DH 105
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 63.5 bits (155), Expect = 3e-13
Identities = 22/112 (19%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 52 LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
++ + L+L+ + + + L + + ++N++ + + L L V+NN I
Sbjct: 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC 77
Query: 112 KISDNIG-NLTSLLVLNISNNKIESLPE--NIGYMKSLTHIDASHNTISYVP 160
+I + + L L L ++NN + L + + +KSLT++ N ++
Sbjct: 78 RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129
Score = 62.8 bits (153), Expect = 5e-13
Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 56 VLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISD 115
++ L ++ + + EL L ++ +I L + S+N I K+ D
Sbjct: 1 MVKLTAELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-D 58
Query: 116 NIGNLTSLLVLNISNNKIESLPENIG-YMKSLTHIDASHNTIS 157
L L L ++NN+I + E + + LT + ++N++
Sbjct: 59 GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101
Score = 56.6 bits (137), Expect = 1e-10
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 8/112 (7%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIA 111
+ ++ N ++ L L L L +NNN++ I E + LP L + ++NN +
Sbjct: 43 QFDAIDFSDNEIRKLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101
Query: 112 KISD--NIGNLTSLLVLNISNNKIESLPE----NIGYMKSLTHIDASHNTIS 157
++ D + +L SL L I N + + I + + +D +
Sbjct: 102 ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153
Score = 45.4 bits (108), Expect = 1e-06
Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 2/88 (2%)
Query: 82 LNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIG 141
L +E + + ++ I I + L ++ S+N+I L +
Sbjct: 4 LTAELIEQA-AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFP 61
Query: 142 YMKSLTHIDASHNTISYVPWKLFSKFHQ 169
++ L + ++N I + L
Sbjct: 62 LLRRLKTLLVNNNRICRIGEGLDQALPD 89
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 62.7 bits (153), Expect = 9e-13
Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 3/107 (2%)
Query: 53 KLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNMI 110
L+ L + ++ + LT+L L ++++ + + LP + ++S N
Sbjct: 89 NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148
Query: 111 AKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
+ L L LNI + + I L + A TI
Sbjct: 149 ITDIMPLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQTIG 194
Score = 56.1 bits (136), Expect = 2e-10
Identities = 15/107 (14%), Positives = 38/107 (35%), Gaps = 3/107 (2%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNMIA 111
+K L + + + I L+NL L + + + L L ++S++
Sbjct: 67 NIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125
Query: 112 KIS-DNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
I L + +++S N + + + L ++ + +
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH 172
Score = 53.4 bits (129), Expect = 2e-09
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 3/104 (2%)
Query: 55 KVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKIS 114
LN + +L + L N + + + ++ ++N +
Sbjct: 24 AYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYN 82
Query: 115 DNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTIS 157
I L++L L I + S N+ + SLT +D SH+
Sbjct: 83 -PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125
Score = 50.7 bits (122), Expect = 2e-08
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 2/85 (2%)
Query: 53 KLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
L +L++ ++ +I L +N + L+ N + LP L N+ + +
Sbjct: 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH 172
Query: 112 KISDNIGNLTSLLVLNISNNKIESL 136
I + L L + I
Sbjct: 173 DYR-GIEDFPKLNQLYAFSQTIGGK 196
Score = 47.6 bits (114), Expect = 3e-07
Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 4/84 (4%)
Query: 74 LTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKI 133
L + I EA + L ++N + ++ I ++ L I+N
Sbjct: 22 FKAYLNGLLGQSSTANITEA--QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA 78
Query: 134 ESLPENIGYMKSLTHIDASHNTIS 157
+ I + +L + ++
Sbjct: 79 TNY-NPISGLSNLERLRIMGKDVT 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 63.1 bits (154), Expect = 1e-12
Identities = 31/105 (29%), Positives = 58/105 (55%), Gaps = 5/105 (4%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
LK L+L +N + L ++ LT L EL++N N+L+ +N L + + NN +
Sbjct: 64 NLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNG--IPSACLSRLFLDNNELRD 120
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
++ +L +L +L+I NNK++S+ +G++ L +D N I+
Sbjct: 121 TD-SLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEIT 163
Score = 60.8 bits (148), Expect = 1e-11
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
KL+ L++ N LK L L+ L L+NN+L +++ L +L ++ NN +
Sbjct: 86 KLEELSVNRNRLKNL--NGIPSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKS 142
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQN 170
I +G L+ L VL++ N+I + + +K + ID + P K + +
Sbjct: 143 IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYIT 198
Score = 56.2 bits (136), Expect = 4e-10
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 52 LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
L L L N L+ + HL NL L++ NN+L+ I + L L ++ N I
Sbjct: 106 ACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEIT 163
Query: 112 KISDNIGNLTSLLVLNISNNKIESLPEN 139
+ L + ++++ K + P
Sbjct: 164 NTG-GLTRLKKVNWIDLTGQKCVNEPVK 190
Score = 53.1 bits (128), Expect = 4e-09
Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 71 IRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISN 130
L N + L + + + +L + FN N+ I ++ + T+L L++S+
Sbjct: 15 DPGLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSH 72
Query: 131 NKIESLPENIGYMKSLTHIDASHNTIS 157
N+I L + + L + + N +
Sbjct: 73 NQISDL-SPLKDLTKLEELSVNRNRLK 98
Score = 43.1 bits (102), Expect = 1e-05
Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 6/115 (5%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
L++L+++ N LK + + L+ L L L+ N++ + L + +++
Sbjct: 129 NLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC-- 184
Query: 113 ISDNIGNLTSLLVLNISNNKIESL--PENIGYMKSLTHIDASHNTISYVPWKLFS 165
+++ + L + N + P I S Y +
Sbjct: 185 VNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVSYK 239
Score = 33.8 bits (78), Expect = 0.020
Identities = 5/52 (9%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 106 SNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
I ++ L + + N+ + L + + + + + ++ I
Sbjct: 5 RPTPINQVF-PDPGLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQ 54
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 63.4 bits (154), Expect = 2e-12
Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 12/150 (8%)
Query: 29 LYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQL 87
L +S T Q LKVL++ + +++R L+ L L++N
Sbjct: 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185
Query: 88 ----EMINEAV-YDLPHLYKFNVSNNMIAKISDNI----GNLTSLLVLNISNNKIESLPE 138
+I+ P L + N + S L L++S+N +
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245
Query: 139 NIG--YMKSLTHIDASHNTISYVPWKLFSK 166
+ L ++ S + VP L +K
Sbjct: 246 APSCDWPSQLNSLNLSFTGLKQVPKGLPAK 275
Score = 53.0 bits (127), Expect = 8e-09
Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 13/119 (10%)
Query: 53 KLKVLNLQYNNLKGLPDEI-----RHLTNLNELALNNNQLEMINEAVY----DLPHLYKF 103
L L+L N G I L LAL N +E + L
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233
Query: 104 NVSNNMIAKISDNIG--NLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
++S+N + + + L LN+S ++ +P+ + L+ +D S+N + P
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNP 290
Score = 51.4 bits (123), Expect = 2e-08
Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 9/110 (8%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHL----TNLNELALNNNQLEMINEAV--YDLPHLYKFNVS 106
L+VL L+ ++ L L L L++N L A L N+S
Sbjct: 202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261
Query: 107 NNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTI 156
+ ++ + L VL++S N+++ P + + ++ N
Sbjct: 262 FTGLKQVPKGL--PAKLSVLDLSYNRLDRNPSPDE-LPQVGNLSLKGNPF 308
Score = 45.7 bits (108), Expect = 2e-06
Identities = 29/142 (20%), Positives = 48/142 (33%), Gaps = 13/142 (9%)
Query: 29 LYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNL--KGLPDEIRHL--TNLNELALNN 84
L DT + + L LK L ++ + + L +R L + L EL L N
Sbjct: 45 LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104
Query: 85 NQL---EMINEAVYDLPHLYKFNVSNNMIAKISDNIGNL-----TSLLVLNISNNKIESL 136
++ P L N+ N A + L L VL+I+ +
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF 164
Query: 137 PEN-IGYMKSLTHIDASHNTIS 157
+ +L+ +D S N
Sbjct: 165 SCEQVRVFPALSTLDLSDNPEL 186
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 63.6 bits (155), Expect = 2e-12
Identities = 26/142 (18%), Positives = 60/142 (42%), Gaps = 13/142 (9%)
Query: 25 ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNN 84
AS + +E+ + E ++ L L+ +++ + I LT L +L +
Sbjct: 21 ASEVAAAFEMQATDTISEEQLA------TLTSLDCHNSSITDMT-GIEKLTGLTKLICTS 73
Query: 85 NQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMK 144
N + ++ + +L +N + + ++ LT L LN NK+ L +
Sbjct: 74 NNITTLD--LSQNTNLTYLACDSNKLTNL--DVTPLTKLTYLNCDTNKLTKLD--VSQNP 127
Query: 145 SLTHIDASHNTISYVPWKLFSK 166
LT+++ + NT++ + ++
Sbjct: 128 LLTYLNCARNTLTEIDVSHNTQ 149
Score = 60.5 bits (147), Expect = 2e-11
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+L L+ N D + T L L + N++ ++ V L + N N I K
Sbjct: 149 QLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITK 205
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
+ ++ L L+ S+NK+ + + + LT+ D S N ++ + SK
Sbjct: 206 L--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSK 255
Score = 59.3 bits (144), Expect = 5e-11
Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+L L+ +N + L + LN L + N + ++ + L + S+N + +
Sbjct: 171 QLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE 226
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
I ++ LT L + S N + L + + LT + + +
Sbjct: 227 I--DVTPLTQLTYFDCSVNPLTELDVST--LSKLTTLHCIQTDLLEID 270
Score = 57.0 bits (138), Expect = 3e-10
Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 11/114 (9%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+L +L+ Q + L + L L LNN +L ++ V L + N I
Sbjct: 298 QLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQD 353
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLT------HIDASHNTISYVP 160
S ++G + +L + + ++P+ SLT +D N ++ P
Sbjct: 354 FS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEP 406
Score = 57.0 bits (138), Expect = 3e-10
Identities = 28/114 (24%), Positives = 40/114 (35%), Gaps = 7/114 (6%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
KL LN N L L + L L N L I+ V L + + N
Sbjct: 107 KLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKIT 162
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
D + T L L+ S NKI L + K L ++ N I+ + +
Sbjct: 163 KLD-VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLDLNQNIQ 213
Score = 55.1 bits (133), Expect = 1e-09
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 7/114 (6%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+L + N L L L+ L L L I+ + L F K
Sbjct: 234 QLTYFDCSVNPLTELDVS--TLSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEGCRKIK 289
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
D + + T L +L+ I L + L ++ ++ ++ + +K
Sbjct: 290 ELD-VTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELDVSHNTK 340
Score = 46.6 bits (111), Expect = 1e-06
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 74 LTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKI 133
+ A + I+E L L + N+ I + I LT L L ++N I
Sbjct: 20 FASEVAAAFEMQATDTISEE--QLATLTSLDCHNSSITDM-TGIEKLTGLTKLICTSNNI 76
Query: 134 ESLPENIGYMKSLTHIDASHNTISYVP 160
+L + +LT++ N ++ +
Sbjct: 77 TTLD--LSQNTNLTYLACDSNKLTNLD 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 61.0 bits (148), Expect = 1e-11
Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 7/124 (5%)
Query: 54 LKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQ-LEMI-NEAVYDLPHLYKFNVSN-NM 109
L L+ + +L ++ ++ N LE+I + +LP L++ + N
Sbjct: 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91
Query: 110 IAKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNT-ISYVPWKLFSK 166
+ I+ NL +L L ISN I+ LP+ + +D N I + F
Sbjct: 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151
Query: 167 FHQN 170
Sbjct: 152 LSFE 155
Score = 58.3 bits (141), Expect = 1e-10
Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 6/120 (5%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALN-NNQLEMINEAVYD--LPHLYKFNVSNN 108
L+ L + +K LPD H L + N + I + ++ N
Sbjct: 105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164
Query: 109 MIAKISDNIGNLTSLLVLNIS-NNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
I +I ++ N T L LN+S NN +E LP ++ +D S I +P
Sbjct: 165 GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224
Score = 57.1 bits (138), Expect = 2e-10
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELAL-NNNQLEMI-NEAVYDLPHLYKFNVSNNMI 110
+ +L L N ++ + + + T L+EL L +NN LE + N+ + ++S I
Sbjct: 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN 154
+ NL L + N K LP + + +L ++
Sbjct: 215 HSLPSYGLENLKKLRARSTYNLK--KLP-TLEKLVALMEASLTYP 256
Score = 56.4 bits (136), Expect = 6e-10
Identities = 24/110 (21%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 52 LKLKVLNLQYNN-LKGLPDE-IRHLT-NLNELALNNNQLEMINEAVYDLPHLYKFNVS-N 107
L+ +L++Q N + + L+ L LN N ++ I+ + ++ L + N+S N
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN 187
Query: 108 NMIAKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNT 155
N + ++ +++ + ++L+IS +I SLP +K L +
Sbjct: 188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237
Score = 51.8 bits (124), Expect = 2e-08
Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 7/122 (5%)
Query: 55 KVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINE-AVYDLPHLYKFNVSNNMIAKI 113
+V Q + + +P ++ N EL +L +I + A L K +S N + ++
Sbjct: 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69
Query: 114 --SDNIGNLTSLLVLNISN-NKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
+D NL L + I N + + + +L ++ S+ I ++P Q
Sbjct: 70 IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129
Query: 170 NR 171
Sbjct: 130 KV 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 58.8 bits (143), Expect = 2e-11
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 29/111 (26%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
+L L+L N ++ LPD + LT L L L+ N+L+ + V+D
Sbjct: 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFD--------------- 97
Query: 112 KISDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
LT L L + N+++S+P+ I + SL I N PW
Sbjct: 98 -------KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN-----PW 136
Score = 30.7 bits (70), Expect = 0.18
Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 25/110 (22%)
Query: 58 NLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNI 117
L +P I ++ L L +N+L+ + V+D
Sbjct: 13 RCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFD--------------------- 49
Query: 118 GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
LT L L++S N+I+SLP+ + + LT + N + +P +F K
Sbjct: 50 -KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDK 98
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 58.9 bits (143), Expect = 4e-11
Identities = 20/121 (16%), Positives = 48/121 (39%), Gaps = 8/121 (6%)
Query: 54 LKVLNLQYNNLKGLP-DEIRHLTNLNELALN-NNQLEMINEAV-YDLPHLYKFNVSNN-M 109
+ L L +L+ +P +L N++ + ++ + L+ + Y+L + + N
Sbjct: 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92
Query: 110 IAKISDNI-GNLTSLLVLNISNNKIESLPEN--IGYMKSLTHIDASHNT-ISYVPWKLFS 165
+ I + L L L I N ++ P+ + ++ + N ++ +P F
Sbjct: 93 LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ 152
Query: 166 K 166
Sbjct: 153 G 153
Score = 58.1 bits (141), Expect = 8e-11
Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 8/122 (6%)
Query: 53 KLKVLNLQYNNLKGLPDE--IRHLTNLNELAL-NNNQLEMINEAVYD--LPHLYKFNVSN 107
LK L + LK PD + L + +N + I + + N
Sbjct: 106 LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165
Query: 108 NMIAKISDNIGNLTSLLVLNIS-NNKIESLPENI--GYMKSLTHIDASHNTISYVPWKLF 164
N + N T L + ++ N + + ++ G + +D S +++ +P K
Sbjct: 166 NGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL 225
Query: 165 SK 166
Sbjct: 226 EH 227
Score = 43.8 bits (104), Expect = 6e-06
Identities = 16/112 (14%), Positives = 43/112 (38%), Gaps = 8/112 (7%)
Query: 54 LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINE-AVYDLPHLYKFNVS-NNMIA 111
+ + +++ +P + L L L I A +LP++ + VS + +
Sbjct: 13 EEDFRVTCKDIQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69
Query: 112 KISDNI-GNLTSLLVLNISNNK-IESLPENI-GYMKSLTHIDASHNTISYVP 160
++ + NL+ + + I N + + + + + L + + + P
Sbjct: 70 QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFP 121
Score = 39.2 bits (92), Expect = 3e-04
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Query: 54 LKVLNLQYNNLKGLPDEIRHLTNLNELAL-NNNQLEMINEAVYD--LPHLYKFNVSNNMI 110
L L N + + T L+ + L N L +I++ + +VS +
Sbjct: 158 TLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217
Query: 111 AKISDNI-GNLTSLLVLN 127
+ +L L+ N
Sbjct: 218 TALPSKGLEHLKELIARN 235
Score = 28.4 bits (64), Expect = 1.1
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 52 LKLKVLNLQYNN-LKGLPDEI-RHL-TNLNELALNNNQLEMINEAVYD-LPHLYKFN 104
KL + L N L + + + + + L ++ + + + L L N
Sbjct: 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN 235
Score = 27.7 bits (62), Expect = 2.2
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 102 KFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHN-TISYV 159
F V+ I +I S L + + ++P + + +++ I S + T+ +
Sbjct: 15 DFRVTCKDIQRIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71
Query: 160 PWKLFS 165
F
Sbjct: 72 ESHSFY 77
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 57.7 bits (140), Expect = 6e-11
Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 29/111 (26%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
L L L+ N L G+ +++ EL L N+++ I+ ++
Sbjct: 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL--------------- 99
Query: 112 KISDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
L L LN+ +N+I + ++ SLT ++ + N P+
Sbjct: 100 -------GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN-----PF 138
Score = 33.8 bits (78), Expect = 0.016
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 106 SNNMIAKISDN--IGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWK 162
++N + +IS + G L L+ L + N++ + N + + N I + K
Sbjct: 37 NDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK 96
Query: 163 LFSKFHQ 169
+F HQ
Sbjct: 97 MFLGLHQ 103
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 58.5 bits (142), Expect = 6e-11
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 9/113 (7%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
LK L L N L+ LPD + LTNL L L +NQL+ + + V+D L +L + ++S N +
Sbjct: 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
+ + + LT L L + N+++S+P+ + + SL +I N PW
Sbjct: 170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN-----PW 217
Score = 56.2 bits (136), Expect = 4e-10
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
L L L N L+ LP+ + LTNL EL L NQL+ + + V+D L +L N+++N +
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL 145
Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPE 138
+ + LT+L L++S N+++SLPE
Sbjct: 146 QSLPKGVFDKLTNLTELDLSYNQLQSLPE 174
Score = 55.0 bits (133), Expect = 1e-09
Identities = 28/120 (23%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 50 PVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNN 108
+ + + +++K + I++L N+ LAL N+L I + L +L ++ N
Sbjct: 39 ELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN 95
Query: 109 MIAKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
+ + + + LT+L L + N+++SLP+ + + +LT+++ +HN + +P +F K
Sbjct: 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK 155
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 56.2 bits (136), Expect = 2e-10
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 29/111 (26%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
L LNL N L+ LP+ + LT L ELALN NQL+ + + V+D
Sbjct: 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFD--------------- 121
Query: 112 KISDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
LT L L + N+++S+P+ + + SL +I N PW
Sbjct: 122 -------KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN-----PW 160
Score = 51.6 bits (124), Expect = 1e-08
Identities = 33/114 (28%), Positives = 61/114 (53%), Gaps = 4/114 (3%)
Query: 55 KVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIAK 112
L+L+ N+LK LP+ + LT+L +L L N+L+ + V++ L L N+S N +
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 113 ISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLF 164
+ + + LT L L ++ N+++SLP+ + + L + N + VP +F
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 54.2 bits (131), Expect = 8e-10
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 29/109 (26%)
Query: 55 KVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
+VL L N + L + LT L L L+NNQL ++ V+D
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD----------------- 75
Query: 114 SDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
LT L L++++N+++S+P +KSLTHI +N PW
Sbjct: 76 -----KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN-----PW 114
Score = 45.7 bits (109), Expect = 9e-07
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD----LPHLYKFN 104
+L L+L N L LP + LT L +L+LN+NQL+ I +D L H++ N
Sbjct: 55 QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 111
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 53.5 bits (129), Expect = 1e-09
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 72 RHLTNLNELALNNNQLEMIN--EAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNIS 129
R +++ EL L+N++ + L + N + I+ N+ L L L +S
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA-NLPKLNKLKKLELS 72
Query: 130 NNKIESLPENIG-YMKSLTHIDASHNTIS 157
+N++ E + +LTH++ S N I
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101
Score = 52.4 bits (126), Expect = 3e-09
Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Query: 49 EPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNN 108
V +L + N + N K L L L+ N L I + L L K +S+N
Sbjct: 17 SDVKELVLDNSRSNEGK-LEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN 74
Query: 109 MIAKISDNIG-NLTSLLVLNISNNKIESLPE--NIGYMKSLTHIDASHNTISYVP 160
++ + + +L LN+S NKI+ L + +++L +D + ++ +
Sbjct: 75 RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129
Score = 52.0 bits (125), Expect = 4e-09
Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIA 111
+L+ L+ L + + + L L +L L++N++ E + + P+L N+S N I
Sbjct: 43 ELEFLSTINVGLTSIAN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101
Query: 112 KISD--NIGNLTSLLVLNISNNKIESLPE----NIGYMKSLTHID 150
+S + L +L L++ N ++ +L + + LT++D
Sbjct: 102 DLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 53.6 bits (129), Expect = 1e-09
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIA 111
L+ L+L L + + + L L +L L+ N++ + + + LP+L N+S N +
Sbjct: 50 NLEFLSLINVGLISVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108
Query: 112 KISD--NIGNLTSLLVLNISNNKIESLPEN----IGYMKSLTHID 150
IS + L L L++ N ++ +L + + LT++D
Sbjct: 109 DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153
Score = 53.2 bits (128), Expect = 2e-09
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 56 VLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISD 115
VL+ +N + NL L+L N L + + LP L K +S N I D
Sbjct: 30 VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLD 88
Query: 116 NIG-NLTSLLVLNISNNKIESLPE--NIGYMKSLTHIDASHNTISYVP 160
+ L +L LN+S NK++ + + ++ L +D + ++ +
Sbjct: 89 MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136
Score = 42.4 bits (100), Expect = 1e-05
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
Query: 83 NNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGY 142
LE+ N + L N +N KI +L L++ N + S+ N+
Sbjct: 12 RRIHLELRNRTPAAVRELVLDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLISV-SNLPK 69
Query: 143 MKSLTHIDASHNTISYVPWKLFSKFHQ 169
+ L ++ S N I L K
Sbjct: 70 LPKLKKLELSENRIFGGLDMLAEKLPN 96
Score = 37.8 bits (88), Expect = 6e-04
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVY--DLPHLYKFNVSNNM 109
KLK L L N + G D + L NL L L+ N+L+ I+ L L ++ N
Sbjct: 72 KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131
Query: 110 IAKISDN----IGNLTSLLVLNISNNKIESLPE 138
+ ++D L L L+ + + + P+
Sbjct: 132 VTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 53.4 bits (129), Expect = 2e-09
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 29/109 (26%)
Query: 55 KVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
+ L L N + L + HL NL +L N+N+L I V+D
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD----------------- 78
Query: 114 SDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
LT L L++++N ++S+P +KSLTHI +N PW
Sbjct: 79 -----KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN-----PW 117
Score = 44.9 bits (107), Expect = 2e-06
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD----LPHLYKFN 104
L+ L N L +P + LT L +L LN+N L+ I +D L H+Y +N
Sbjct: 58 NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114
Score = 28.8 bits (65), Expect = 0.76
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNN 85
+L L+L N+LK +P +L +L + L NN
Sbjct: 82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 44.7 bits (106), Expect = 5e-06
Identities = 18/130 (13%), Positives = 45/130 (34%), Gaps = 26/130 (20%)
Query: 54 LKVLNLQYNNL-----KGLPDEIRHLTNLNELALNNNQL-----EMINEAVYDLPHLYKF 103
++ +L+ + + K + + ++ E+ L+ N + ++E + L
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 104 NVSNNMIAKISDNIG-----------NLTSLLVLNISNNKI-----ESLPENIGYMKSLT 147
S+ ++ D I L + +S+N E L + + L
Sbjct: 66 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125
Query: 148 HIDASHNTIS 157
H+ +N +
Sbjct: 126 HLYLHNNGLG 135
Score = 43.2 bits (102), Expect = 2e-05
Identities = 14/129 (10%), Positives = 42/129 (32%), Gaps = 27/129 (20%)
Query: 54 LKVLNLQYNNL-----KGLPDEIRHLTNLNELALNNNQL------EMINEAVYDLPHLYK 102
L+ + N L K + L+ + + N + ++ E + L
Sbjct: 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV 220
Query: 103 FNVSNNMI-----AKISDNIGNLTSLLVLNISNNKI---------ESLPENIGYMKSLTH 148
++ +N + ++ + + +L L +++ + ++ + L
Sbjct: 221 LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK--LENIGLQT 278
Query: 149 IDASHNTIS 157
+ +N I
Sbjct: 279 LRLQYNEIE 287
Score = 37.0 bits (86), Expect = 0.002
Identities = 23/120 (19%), Positives = 38/120 (31%), Gaps = 29/120 (24%)
Query: 53 KLKVLNLQYNNL-----KGLPDEIRHLTNLNELALNNNQL-----EMINEAVYDLPHLYK 102
KL + L N + L D + T L L L+NN L I A+ +L
Sbjct: 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA---- 150
Query: 103 FNVSNNMIAKISDNIGNLTSLLVLNISNNKIES-----LPENIGYMKSLTHIDASHNTIS 157
++ N L + N++E+ + + L + N I
Sbjct: 151 ----------VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR 200
Score = 36.6 bits (85), Expect = 0.003
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 18/99 (18%)
Query: 53 KLKVLNLQYNNL-----KGLPDEIRHLTNLNELALNNNQL-----EMINEAVYDLPH--L 100
+LKVL+LQ N L ++ NL EL LN+ L + +A L + L
Sbjct: 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 276
Query: 101 YKFNVSNNMI-----AKISDNIG-NLTSLLVLNISNNKI 133
+ N I + I + LL L ++ N+
Sbjct: 277 QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315
Score = 26.2 bits (58), Expect = 6.9
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 122 SLLVLNISNNKI-----ESLPENIGYMKSLTHIDASHNTIS 157
S+ ++ + I +S+ + S+ I S NTI
Sbjct: 5 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIG 45
Score = 26.2 bits (58), Expect = 6.9
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 52 LKLKVLNLQYNNL-----KGLPDEIR-HLTNLNELALNNNQLEMINEAVYDLPHLYKFN 104
+ L+ L LQYN + + L I + +L L LN N+ ++ V ++ ++
Sbjct: 274 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR 332
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 40.3 bits (95), Expect = 2e-04
Identities = 20/139 (14%), Positives = 50/139 (35%), Gaps = 18/139 (12%)
Query: 54 LKVLNLQYNNL--KGLPDEIRHLTNLNELALNNNQL-----EMINEAVYDLPHLYKFNVS 106
++ L++Q L + + L + L++ L + I+ A+ P L + N+
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64
Query: 107 NNMI-----AKISDNIGNL-TSLLVLNISNNKI-----ESLPENIGYMKSLTHIDASHNT 155
+N + + + + L++ N + L + + +L + S N
Sbjct: 65 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124
Query: 156 ISYVPWKLFSKFHQNRSSR 174
+ +L + + R
Sbjct: 125 LGDAGLQLLCEGLLDPQCR 143
Score = 36.9 bits (86), Expect = 0.002
Identities = 21/135 (15%), Positives = 45/135 (33%), Gaps = 28/135 (20%)
Query: 48 SEPVLKLKVLNLQYNNL-----KGLPDEIRHLTNLNELALNNNQL-----EMINEAVYD- 96
+ +L+ L L+ + + L + +L ELAL +N+L + +
Sbjct: 195 KDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP 254
Query: 97 LPHLYKFNVSNNMI-----AKISDNIGNLTSLLVLNISNNKI---------ESLPENIGY 142
L + I + + SL L+++ N++ E+L E
Sbjct: 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEP--- 311
Query: 143 MKSLTHIDASHNTIS 157
L + + +
Sbjct: 312 GCQLESLWVKSCSFT 326
Score = 36.9 bits (86), Expect = 0.002
Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 22/135 (16%)
Query: 54 LKVLNLQYNNL-----KGLPDEIRH-LTNLNELALNNNQL-----EMINEAVYDLPHLYK 102
LK L+L N L + L + + L L + + + + L +
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345
Query: 103 FNVSNNMI-----AKISDNIG-NLTSLLVLNISNNKI-----ESLPENIGYMKSLTHIDA 151
+SNN + ++ +G + L VL +++ + SL + SL +D
Sbjct: 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405
Query: 152 SHNTISYVPWKLFSK 166
S+N + +
Sbjct: 406 SNNCLGDAGILQLVE 420
Score = 36.9 bits (86), Expect = 0.002
Identities = 22/117 (18%), Positives = 48/117 (41%), Gaps = 21/117 (17%)
Query: 36 SDTGSGESNMSQSEPVLK-LKVLNLQYNNL-----KGLPDEIRHLTNLNELALNNNQLEM 89
++ ++ P+L+ +V+ L L K + +R L EL L +N+L
Sbjct: 11 QCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG- 69
Query: 90 INEAVYDL--------PHLYKFNVSNNMI-----AKISDNIGNLTSLLVLNISNNKI 133
+ V+ + + K ++ N + +S + L +L L++S+N +
Sbjct: 70 -DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125
Score = 34.9 bits (81), Expect = 0.010
Identities = 20/101 (19%), Positives = 44/101 (43%), Gaps = 16/101 (15%)
Query: 49 EPVLKLKVLNLQYNNL-----KGLPDEIRHLTNLNELALNNNQL-----EMINEAVYDLP 98
+P +L+ L L+Y +L + L +R + EL ++NN + ++ + + D P
Sbjct: 139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSP 198
Query: 99 -HLYKFNVSNNMI-----AKISDNIGNLTSLLVLNISNNKI 133
L + + + + + + SL L + +NK+
Sbjct: 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239
Score = 34.6 bits (80), Expect = 0.012
Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 28/133 (21%)
Query: 50 PVLKLKVLNLQYNNL-----KGLPDEIRHLTNLNELALNNNQLEM-----INEAVYD-LP 98
P +L+ L + + L +R +L EL+L N+L + E + +
Sbjct: 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC 313
Query: 99 HLYKFNVSNNMI-----AKISDNIGNLTSLLVLNISNNKI---------ESLPENIGYMK 144
L V + + S + LL L ISNN++ + L +
Sbjct: 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQP---GS 370
Query: 145 SLTHIDASHNTIS 157
L + + +S
Sbjct: 371 VLRVLWLADCDVS 383
Score = 33.8 bits (78), Expect = 0.021
Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 26/134 (19%)
Query: 48 SEPVLKLKVLNLQYNNL-----KGLPDEIRHLTNLNELALNNNQLEMINEAVYDL----- 97
EP +L+ L ++ + + L EL ++NN+LE + V +L
Sbjct: 309 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE--DAGVRELCQGLG 366
Query: 98 ---PHLYKFNVSNNMI-----AKISDNIGNLTSLLVLNISNNKIE-----SLPENIGYMK 144
L +++ + + ++ + SL L++SNN + L E++
Sbjct: 367 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 426
Query: 145 S-LTHIDASHNTIS 157
L + S
Sbjct: 427 CLLEQLVLYDIYWS 440
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens}
PDB: 3rez_A*
Length = 130
Score = 37.1 bits (86), Expect = 8e-04
Identities = 11/35 (31%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 54 LKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQL 87
L L NNL LP + L L L N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67
Score = 32.9 bits (75), Expect = 0.022
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 6/42 (14%)
Query: 121 TSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
L ++ N + +LP + + +L N PW
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN-----PW 67
Score = 32.1 bits (73), Expect = 0.044
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 75 TNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNN 108
+ EL L N L + + D LP L ++ N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 37.8 bits (88), Expect = 0.001
Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 26/127 (20%)
Query: 53 KLKVLNLQYNNL--KGLPDEIRHLTNLNELALNNNQL-----EMINEAV-YDLPHLYKFN 104
L +NL L GL + +L L N L + + + + +D +
Sbjct: 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLR 161
Query: 105 VSNNMI-----AKISDNIGNLTSLLVLNISNNKI---------ESLPENIGYMKSLTHID 150
+SNN + A + + + TS+ L++ + + L N + L ++
Sbjct: 162 LSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN----RQLQELN 217
Query: 151 ASHNTIS 157
++N
Sbjct: 218 VAYNGAG 224
Score = 35.8 bits (83), Expect = 0.005
Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 21/128 (16%)
Query: 51 VLKLKVLNLQYNNL-----KGLPDEIRH-LTNLNELALNNNQL-----EMINEAVYDLPH 99
L+ + L LQ N+L K L D + H + L L+NN L ++ E +
Sbjct: 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS 184
Query: 100 LYKFNVSNNMI-----AKISDNIGNLTSLLVLNISNNKI-----ESLPENIGYMKSLTHI 149
+ ++ + + ++ + L LN++ N +L SL +
Sbjct: 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELL 244
Query: 150 DASHNTIS 157
N +S
Sbjct: 245 HLYFNELS 252
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 37.3 bits (86), Expect = 0.001
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 55 KVLNLQYNNLKGLPDEIRH--LTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+ L+L+ L+ PD + LN + L +I E ++P L N+SNN + +
Sbjct: 130 QALDLK--GLRSDPDLVAQNIDVVLNRRSCMAATLRIIEE---NIPELLSLNLSNNRLYR 184
Query: 113 I---SDNIGNLTSLLVLNISNNKIESLPENIGYMKSL 146
+ S + +L +LN+S N+++S E + +K L
Sbjct: 185 LDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIKGL 220
Score = 36.5 bits (84), Expect = 0.002
Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 6/116 (5%)
Query: 45 MSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFN 104
S + P L L + L R+ + L L + + A L + +
Sbjct: 97 NSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRS 156
Query: 105 VSNNMIAKISDNIGNLTSLLVLNISNNKIESL---PENIGYMKSLTHIDASHNTIS 157
+ I +NI L SL N+SNN++ L + +L ++ S N +
Sbjct: 157 CMAATLRIIEENIPELLSL---NLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 35.5 bits (82), Expect = 0.006
Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 25/103 (24%)
Query: 53 KLKVLNLQYNNL---------KGLPDEIRHLTNLNELALNNNQL-----EMINEAVYDLP 98
+ L+L N L H+ +LN L N L E + L
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN---LCLNCLHGPSLENLKLLKDSLK 253
Query: 99 HLYKFNVSNNMIAKISDN--------IGNLTSLLVLNISNNKI 133
HL + +++ +S N+ +++++ + +I
Sbjct: 254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296
Score = 32.8 bits (75), Expect = 0.048
Identities = 20/130 (15%), Positives = 45/130 (34%), Gaps = 25/130 (19%)
Query: 53 KLKVLNLQYNNL-----KGLPDEIRHL-TNLNELALNNNQL-----EMINEAVYDLP-HL 100
+ LNL+ NNL L + + ++ L L+ N L + +P H+
Sbjct: 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227
Query: 101 YKFNVSNNMI-----AKISDNIGNLTSLLVLNISNNKI--------ESLPENIGYMKSLT 147
N+ N + + +L L + + + + ++L ++ +
Sbjct: 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287
Query: 148 HIDASHNTIS 157
+D + I
Sbjct: 288 LVDKNGKEIH 297
Score = 28.1 bits (63), Expect = 1.5
Identities = 21/134 (15%), Positives = 51/134 (38%), Gaps = 24/134 (17%)
Query: 48 SEPVLKLKVLNLQYNNL-----KGLPDEIRHL-TNLNELALNNNQL-----EMINEAVYD 96
+ + LNL N+L L + + N+ L L+ N L + + + +
Sbjct: 47 ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAA 106
Query: 97 LP-HLYKFNVSNNMI-----AKISDNIGNL-TSLLVLNISNNKI-----ESLPENIGYM- 143
+P + ++ N ++ NL S+ LN+ N + + L + + +
Sbjct: 107 IPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP 166
Query: 144 KSLTHIDASHNTIS 157
++ ++ N ++
Sbjct: 167 ANVNSLNLRGNNLA 180
Score = 28.1 bits (63), Expect = 1.8
Identities = 20/129 (15%), Positives = 48/129 (37%), Gaps = 24/129 (18%)
Query: 53 KLKVLNLQYNNL-----KGLPDEIRHL-TNLNELALNNNQL-----EMINEAVYDLP-HL 100
+ L+L NNL L + ++ L L+ N L + + + + +P ++
Sbjct: 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82
Query: 101 YKFNVSNNMI-----AKISDNI-GNLTSLLVLNISNNKI-----ESLPENIGYM-KSLTH 148
N+S N + ++ + ++ VL++ N + + S+T
Sbjct: 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142
Query: 149 IDASHNTIS 157
++ N +
Sbjct: 143 LNLRGNDLG 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 33.8 bits (76), Expect = 0.025
Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 16/103 (15%)
Query: 72 RHLTNLNELALNNNQL-----EMINEAVYDLPHLYKFNVSNNMI-----AKISDNIGNLT 121
NL L + + + EM E+ LP L ++S ++ + D++ +
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDI-LPQLETMDISAGVLTDEGARLLLDHVDKIK 307
Query: 122 SLLVLNISNNKI-----ESLPENIGYMKSLTHIDASHNTISYV 159
L +N+ N + + L +++ ++ + SY
Sbjct: 308 HLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQEYDDDYSYP 350
Score = 30.3 bits (67), Expect = 0.33
Identities = 8/48 (16%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 45 MSQSEPVLKLKVLNLQYNNL-----KGLPDEIRHLTNLNELALNNNQL 87
+S+ + +L+ +++ L + L D + + +L + + N L
Sbjct: 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.11
Identities = 18/133 (13%), Positives = 41/133 (30%), Gaps = 31/133 (23%)
Query: 12 DSARLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEI 71
+V G A+ S+ G N + + L+ + + +
Sbjct: 1781 SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA-------LQYVVERV 1833
Query: 72 RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKIS---DNIGNLTSLL-VLN 127
T L +E++N +NV N + + +T++L +
Sbjct: 1834 GKRT--GWL------VEIVN-----------YNVENQQYV-AAGDLRALDTVTNVLNFIK 1873
Query: 128 ISNNKIESLPENI 140
+ I L +++
Sbjct: 1874 LQKIDIIELQKSL 1886
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 30.6 bits (69), Expect = 0.27
Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 18/107 (16%)
Query: 53 KLKVLNLQYN-NLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
LK L L L+ L ++ L EL Y V ++ +
Sbjct: 212 NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG----------------YTAEVRPDVYS 255
Query: 112 KISDNIGNLTSLLVLNISNNKI-ESLPENIGYMKSLTHIDASHNTIS 157
+S + L L+ + + LP LT ++ S+ T+
Sbjct: 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302
Score = 28.7 bits (64), Expect = 1.1
Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 15/102 (14%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
LK L+L+ +++ + L+ L +N + VS + + +
Sbjct: 157 NLKELDLRESDVDDVSGHW-----LSHFPDTYTSLVSLNIS------CLASEVSFSALER 205
Query: 113 ISDNIGNLTSLLVLNISNN-KIESLPENIGYMKSLTHIDASH 153
+ NL S L ++ +E L + L +
Sbjct: 206 LVTRCPNLKS---LKLNRAVPLEKLATLLQRAPQLEELGTGG 244
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.34
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 3 QSQNSGKMRDSARLVSLVGSASASALLYTYE 33
+ Q K++ S +L + SA A A+ T E
Sbjct: 18 EKQALKKLQASLKLYA-DDSAPALAIKATME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.62
Identities = 22/134 (16%), Positives = 43/134 (32%), Gaps = 40/134 (29%)
Query: 44 NMSQ-SEPVLKLKVL-NLQYN---NLKGLPD---EIRHLTNLNELALNN--------NQL 87
N+ + P L++L L Y N D I+ + + L N L
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 88 EMINEAVYDLPHLYKFNVSNNMI-----AKISDNIGNLT-----------------SL-L 124
++ V + FN+S ++ +++D + T L
Sbjct: 248 -LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 125 VLNISNNKIESLPE 138
+L + + + LP
Sbjct: 307 LLKYLDCRPQDLPR 320
Score = 27.9 bits (61), Expect = 2.3
Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 23/98 (23%)
Query: 45 MSQSEPVLKLKVLNLQYNNLKGLPDEIRHL-TNLNELALNNNQLEMINEAVYDLPHLYKF 103
+ E ++ + + + + + L +IRH T N N L+ L YK
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ-------QL-KFYK- 531
Query: 104 NVSNNMIAKISDNIGNLTSLL------VLNISNNKIES 135
I DN L+ + I N I S
Sbjct: 532 -------PYICDNDPKYERLVNAILDFLPKIEENLICS 562
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05
2, protein structure initiative, midwest center for
structu genomics; 2.15A {Enterococcus faecalis}
Length = 372
Score = 28.2 bits (63), Expect = 1.7
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 106 SNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN 154
+ +A S I + LN S +E + E + + ++A HN
Sbjct: 103 TIEQMAHASHKID-----IGLNASTITLEEVAELKAHQADFSRLEAWHN 146
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 28.0 bits (62), Expect = 2.3
Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 53 KLKVLNLQY-NNLKGLPDEIRHLTN--LNELALNNNQLEMINEAVYDLPHLYKFNVSNNM 109
+LK L ++ + +G+ DE ++ L LA +LE + +Y +++N
Sbjct: 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMA--------VYVSDITNES 394
Query: 110 IAKISDNIGNLTSLLVLNISN 130
+ I + NL ++ +
Sbjct: 395 LESIGTYLKNLCDFRLVLLDR 415
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 27.5 bits (61), Expect = 2.4
Identities = 18/108 (16%), Positives = 41/108 (37%), Gaps = 16/108 (14%)
Query: 59 LQYNNLKGLPDEIRHLTNLNE----LALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKIS 114
+Q + +PDE + T++ L ++ L+ +N VS I +
Sbjct: 11 MQSYVPRIVPDEPDNDTDVESCINRLREDDTDLKEVNINNMK-------RVSKERIRSLI 63
Query: 115 DNIGNLTSLLVLNISNNKI-ESLPENIGYM----KSLTHIDASHNTIS 157
+ N + +++N I +S + + SL ++ N ++
Sbjct: 64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 26.9 bits (60), Expect = 3.4
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 24/100 (24%)
Query: 75 TNLNELALNN-NQL-----EMINEAVYDLPHLYKFNVSNNMI-----AKISDNIGNLTSL 123
+L E+ LNN + + EA+ ++ KF++ +++ + +L
Sbjct: 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95
Query: 124 LVLNISNNKI---------ESLPENIGYMKSLTHIDASHN 154
LN+ +N I E+L N SL + +
Sbjct: 96 KSLNVESNFISGSGILALVEALQSN----TSLIELRIDNQ 131
Score = 26.9 bits (60), Expect = 3.5
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 21/86 (24%)
Query: 54 LKVLNLQYNNLKG-----LPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNN 108
LK LN++ N + G L + ++ T+L EL ++N + N ++ ++ + N
Sbjct: 95 LKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKN---- 150
Query: 109 MIAKISDNIGNLTSLLVLNISNNKIE 134
T+LL +
Sbjct: 151 ------------TTLLKFGYHFTQQG 164
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.358
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,467,774
Number of extensions: 134820
Number of successful extensions: 2819
Number of sequences better than 10.0: 1
Number of HSP's gapped: 719
Number of HSP's successfully gapped: 504
Length of query: 184
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 96
Effective length of database: 4,244,745
Effective search space: 407495520
Effective search space used: 407495520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.4 bits)