RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3785
(184 letters)
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 52.8 bits (126), Expect = 5e-10
Identities = 21/108 (19%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
Query: 55 KVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKIS 114
+VL+L + +L L + L + L L++N+L + A+ L L S+N + +
Sbjct: 1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59
Query: 115 DNIGNLTSLLVLNISNNKIESLP--ENIGYMKSLTHIDASHNTISYVP 160
L L + NN+++ + + L ++ N++
Sbjct: 60 GVANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106
Score = 33.1 bits (75), Expect = 0.006
Identities = 12/67 (17%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 104 NVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKL 163
++++ + + ++ L + L++S+N++ +LP + ++ L + AS N + V
Sbjct: 4 HLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62
Query: 164 FSKFHQN 170
Q
Sbjct: 63 NLPRLQE 69
Score = 31.6 bits (71), Expect = 0.019
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 24/96 (25%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLN----------------------ELALNNNQLEMI 90
+ L+L +N L+ LP + L L EL L NN+L+
Sbjct: 21 LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQS 80
Query: 91 N--EAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLL 124
+ + P L N+ N + + L +L
Sbjct: 81 AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 49.8 bits (117), Expect = 3e-08
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 71 IRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISN 130
+L EL ++NN+L + P L + S N +A++ + NL L++
Sbjct: 280 CDLPPSLEELNVSNNKLIELPA---LPPRLERLIASFNHLAEVPELPQNLKQ---LHVEY 333
Query: 131 NKIESLPENIGYMKSL 146
N + P+ ++ L
Sbjct: 334 NPLREFPDIPESVEDL 349
Score = 48.3 bits (113), Expect = 1e-07
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
L+ LN+ N L LP L L + N L + E +L + +V N + +
Sbjct: 285 SLEELNVSNNKLIELPALPPRLERLI---ASFNHLAEVPE---LPQNLKQLHVEYNPLRE 338
Query: 113 ISDNIGNLTSL 123
D ++ L
Sbjct: 339 FPDIPESVEDL 349
Score = 46.7 bits (109), Expect = 3e-07
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 83 NNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGY 142
N I P L + NVSNN + ++ L L S N + +PE
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLE---RLIASFNHLAEVPELPQ- 324
Query: 143 MKSLTHIDASHNTISYVP 160
+L + +N + P
Sbjct: 325 --NLKQLHVEYNPLREFP 340
Score = 39.0 bits (89), Expect = 1e-04
Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 10/118 (8%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
+ L L L LP+ HL +L + N L + E L V NN +
Sbjct: 39 QAHELELNNLGLSSLPELPPHLESLV---ASCNSLTELPEL---PQSLKSLLVDNNNL-- 90
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQN 170
+ +L LL +N + L ID +N++ +P S
Sbjct: 91 --KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIA 146
Score = 38.7 bits (88), Expect = 2e-04
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLY 101
+L+ L +N+L +P+ ++L L+ + N L + + L
Sbjct: 305 RLERLIASFNHLAEVPELPQNLKQLH---VEYNPLREFPDIPESVEDLR 350
Score = 38.3 bits (87), Expect = 3e-04
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 99 HLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158
++ ++N ++ + + +L SL S N + LPE +KSL + + +S
Sbjct: 39 QAHELELNNLGLSSLPELPPHLESL---VASCNSLTELPELPQSLKSLLVDNNNLKALSD 95
Query: 159 VPWKLFSKFHQNRSSRFGCALIMNDF 184
+P L N L + F
Sbjct: 96 LPPLLEYLGVSNNQLEKLPELQNSSF 121
Score = 36.7 bits (83), Expect = 8e-04
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 99 HLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158
N +I SL LN+SNNK+ LP L + AS N ++
Sbjct: 262 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAE 318
Query: 159 VP 160
VP
Sbjct: 319 VP 320
Score = 35.6 bits (80), Expect = 0.002
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 75 TNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIE 134
+EL LNN L + E PHL S N + ++ + +L S L + NN ++
Sbjct: 38 RQAHELELNNLGLSSLPE---LPPHLESLVASCNSLTELPELPQSLKS---LLVDNNNLK 91
Query: 135 SLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
+L + L ++ S+N + +P S F +
Sbjct: 92 ALSDL---PPLLEYLGVSNNQLEKLPELQNSSFLK 123
Score = 32.1 bits (71), Expect = 0.032
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNN 84
LK L+++YN L+ PD + +L +N+
Sbjct: 325 NLKQLHVEYNPLREFPDIPESVEDLR---MNS 353
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 50.0 bits (118), Expect = 3e-08
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 52 LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
L N I +L NL L L N + I V L L + +NN ++
Sbjct: 284 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFANNKVS 342
Query: 112 KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN 154
+S ++ NLT++ L+ +N+I L + + +T + +
Sbjct: 343 DVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ 383
Score = 48.8 bits (115), Expect = 7e-08
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 4/108 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
KL L L N + + N N + +L +L + N I+
Sbjct: 264 KLTELKLGANQISNISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 321
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
IS + +LT L L +NNK+ + + + ++ + A HN IS +
Sbjct: 322 IS-PVSSLTKLQRLFFANNKVSDVSS-LANLTNINWLSAGHNQISDLT 367
Score = 36.5 bits (83), Expect = 0.001
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 96 DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNT 155
DL + I I D + L +L +N SNN++ + + + L I ++N
Sbjct: 42 DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ 99
Query: 156 ISYVPW 161
I+ +
Sbjct: 100 IADITP 105
Score = 33.8 bits (76), Expect = 0.008
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 57 LNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDN 116
L N + + TNL+EL+LN NQL+ I + L +L +++NN I+ ++
Sbjct: 202 LIATNNQISDITPLGIL-TNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLA-P 258
Query: 117 IGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPW 161
+ LT L L + N+I ++ G + P
Sbjct: 259 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 303
Score = 31.5 bits (70), Expect = 0.043
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNM 109
++ L +K + D + +L NL ++ +NNQL I + +L L ++NN
Sbjct: 45 QVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMNNNQ 99
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 47.0 bits (110), Expect = 3e-07
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
Query: 54 LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIAK 112
L+V+ L+ +P ++ + L L NN++ I + + L +L+ + NN I+K
Sbjct: 12 LRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69
Query: 113 ISDN-IGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNR 171
IS L L L +S N+++ LPE + + N I+ V +F+ +Q
Sbjct: 70 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL--QELRVHENEITKVRKSVFNGLNQMI 127
Query: 172 S 172
Sbjct: 128 V 128
Score = 45.4 bits (106), Expect = 1e-06
Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 8/121 (6%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLP----HLYKFNVSNN 108
KL+ L L N LK LP+++ L EL ++ N++ + ++V++ +
Sbjct: 80 KLERLYLSKNQLKELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 137
Query: 109 MIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFH 168
+ + L + I++ I ++P+ + SLT + N I+ V +
Sbjct: 138 SSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLN 195
Query: 169 Q 169
Sbjct: 196 N 196
Score = 44.3 bits (103), Expect = 2e-06
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Query: 53 KLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQL-EMINEAVYDLPHLYKFNVSNNMI 110
L L+L N + ++ L NL +L L+ N + + N ++ + PHL + +++NN +
Sbjct: 172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 231
Query: 111 AKISDNIGNLTSLLVLNISNNKIESLPEN-------IGYMKSLTHIDASHNTISYVP 160
K+ + + + V+ + NN I ++ N S + + N + Y
Sbjct: 232 VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 288
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 42.0 bits (97), Expect = 2e-05
Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 83 NNNQLEMINEAVYDLPHLYKFNVS--NNMIAKISDNIGNLTSLLVLNISNNKIESLPENI 140
N+L+ + + + NN+ + + L +L L + N + ++P+
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 141 GYMKSLTHIDASHN 154
L N
Sbjct: 192 FGSHLLPFAFLHGN 205
Score = 39.3 bits (90), Expect = 1e-04
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 117 IGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
+ + S L +N + +LP ++ K T + S N + + +
Sbjct: 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTR 56
Score = 33.9 bits (76), Expect = 0.006
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 62 NNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNN 108
N + + L NL+ L L N L I + + L + N
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
Score = 32.0 bits (71), Expect = 0.026
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 54 LKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNM 109
+L+L N L + T L +L L+ + + LP L ++S+N
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQ 88
Score = 31.2 bits (69), Expect = 0.050
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 54 LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQL 87
L L LQ N+L +P L L+ N
Sbjct: 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
Score = 30.5 bits (67), Expect = 0.11
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 54 LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNM 109
+N NL LP ++ + L L+ N L + L + N+
Sbjct: 12 HLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 40.6 bits (94), Expect = 3e-05
Identities = 19/118 (16%), Positives = 43/118 (36%), Gaps = 4/118 (3%)
Query: 58 NLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA---KIS 114
L+ ++ L + + ++ AL+ L + + N ++M A I
Sbjct: 3 ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPD-LVAQNIDVVLNRRSSMAATLRIIE 61
Query: 115 DNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRS 172
+NI L SL + N +++ + + +L ++ S N + K +
Sbjct: 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 119
Score = 38.6 bits (89), Expect = 1e-04
Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 5/116 (4%)
Query: 54 LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
L L+ PD + L ++ + ++P L N+SNN + ++
Sbjct: 22 GSQQALDLKGLRSDPD-LVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRL 80
Query: 114 SD---NIGNLTSLLVLNISNNKIESLPE-NIGYMKSLTHIDASHNTISYVPWKLFS 165
D + +L +LN+S N+++S E + L + N++S +
Sbjct: 81 DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 39.9 bits (92), Expect = 3e-05
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 106 SNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPW 161
+ +I + + N L++ KI + + ID S N I +
Sbjct: 4 TAELIEQAAQYT-NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG 58
Score = 38.8 bits (89), Expect = 1e-04
Identities = 22/130 (16%), Positives = 52/130 (40%), Gaps = 4/130 (3%)
Query: 43 SNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYK 102
+Q ++ + L+L+ + + + L + + ++N++ + + L L
Sbjct: 9 EQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKT 67
Query: 103 FNVSNNMIA-KISDNIGNLTSLLVLNISNNKIESLP--ENIGYMKSLTHIDASHNTISYV 159
V+NN I L L L ++NN + L + + +KSLT++ N ++
Sbjct: 68 LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127
Query: 160 PWKLFSKFHQ 169
++
Sbjct: 128 KHYRLYVIYK 137
Score = 37.6 bits (86), Expect = 3e-04
Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 2/110 (1%)
Query: 63 NLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTS 122
L + + EL L ++ +I L + S+N I K+ D L
Sbjct: 6 ELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRR 64
Query: 123 LLVLNISNNKIES-LPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNR 171
L L ++NN+I + LT + ++N++ + ++
Sbjct: 65 LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 114
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 40.5 bits (93), Expect = 5e-05
Identities = 9/49 (18%), Positives = 19/49 (38%)
Query: 106 SNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN 154
+N + + + L L LN+S N + G ++ ++N
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301
Score = 37.8 bits (86), Expect = 3e-04
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQL 87
L LN+ +NNL G + +L + A NN+
Sbjct: 269 FLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
Score = 34.7 bits (78), Expect = 0.004
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 58 NLQYNNLKG-LPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNN 108
+L+ N + G LP + L L+ L ++ N L +L +NN
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301
Score = 32.4 bits (72), Expect = 0.026
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 7/126 (5%)
Query: 51 VLKLKVLNLQYNNLKG---LPDEIRHLTNLN--ELALNNNQLEMINEAVYDLPHLYKFNV 105
++ L+L NL +P + +L LN + NN + I A+ L L+ +
Sbjct: 49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108
Query: 106 SNNMIAKISDNIGNLTSLLVLNIS--NNKIESLPENIGYMKSLTHIDASHNTISYVPWKL 163
++ ++ + + LV N +LP +I + +L I N IS
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168
Query: 164 FSKFHQ 169
+ F +
Sbjct: 169 YGSFSK 174
Score = 28.9 bits (63), Expect = 0.29
Identities = 9/32 (28%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 127 NISNNKIE-SLPENIGYMKSLTHIDASHNTIS 157
++ NN+I +LP+ + +K L ++ S N +
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 39.9 bits (91), Expect = 9e-05
Identities = 15/138 (10%), Positives = 37/138 (26%), Gaps = 7/138 (5%)
Query: 52 LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQL-----EMINEAVYDLPHLYKFNVS 106
LK+ + + K + + ++ E+ L+ N + ++E + L S
Sbjct: 8 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67
Query: 107 NNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
+ ++ D I LL+ + L +
Sbjct: 68 DIFTGRVKDEIPEALRLLLQALLKCP--KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 125
Query: 167 FHQNRSSRFGCALIMNDF 184
+ + + A
Sbjct: 126 LYLHNNGLGPQAGAKIAR 143
Score = 30.2 bits (66), Expect = 0.12
Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 6/56 (10%)
Query: 97 LPHLYKFNVSNNMI------AKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSL 146
L + N I + + LL L ++ N+ + + ++ +
Sbjct: 272 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 327
Score = 28.3 bits (61), Expect = 0.49
Identities = 14/106 (13%), Positives = 32/106 (30%), Gaps = 17/106 (16%)
Query: 29 LYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLE 88
L +S+ + + + L+ L LQYN ++ + L +
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL-----DAVRTLKTVIDEK---- 300
Query: 89 MINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIE 134
+P L ++ N ++ D + + + E
Sbjct: 301 --------MPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 338
Score = 25.6 bits (54), Expect = 4.1
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEM 89
L L L N D + + + E+
Sbjct: 303 DLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL 339
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 38.2 bits (87), Expect = 2e-04
Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 3/104 (2%)
Query: 54 LKVLNLQYNNLKGLPDEIRHLTNLNELAL-NNNQLEMINEAVY-DLPHLYKFNVSNNMIA 111
L + + NL EL + N L+ + L L + + +
Sbjct: 10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69
Query: 112 -KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN 154
D L LN+S N +ESL SL + S N
Sbjct: 70 FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113
Score = 27.1 bits (58), Expect = 0.99
Identities = 4/53 (7%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 121 TSLLVLNISNNKIESLPENIGYMKSLTHIDASHNT-ISYVPWKLFSKFHQNRS 172
L + + ++ ++LT + + + ++ + + R+
Sbjct: 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 38.3 bits (87), Expect = 2e-04
Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Query: 53 KLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNMI 110
L L L N + +P R L +L+ L L+ N++ ++ A DL L + N +
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 111 AKI-SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
+ + ++ + L +L L +++N L S + +
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP 261
Score = 31.7 bits (70), Expect = 0.034
Identities = 17/121 (14%), Positives = 40/121 (33%), Gaps = 5/121 (4%)
Query: 54 LKVLNLQYNNLKGLPDE----IRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNM 109
+ + L N + +P R+LT L + +++ L + + +
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 110 IAKISDNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISYVPWKLFSKFH 168
+ L L L++ ++ L P + +L ++ N + +P F
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153
Query: 169 Q 169
Sbjct: 154 N 154
Score = 25.5 bits (54), Expect = 3.8
Identities = 8/68 (11%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 104 NVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWK 162
+ + + I + + + N+I +P ++LT + N ++ +
Sbjct: 17 SCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74
Query: 163 LFSKFHQN 170
F+
Sbjct: 75 AFTGLALL 82
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 36.9 bits (83), Expect = 9e-04
Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 20/84 (23%)
Query: 52 LKLKVLNLQYNNL--KGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNM 109
L ++ L++Q L + + L + L++ L +
Sbjct: 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL------------------TEAR 43
Query: 110 IAKISDNIGNLTSLLVLNISNNKI 133
IS + +L LN+ +N++
Sbjct: 44 CKDISSALRVNPALAELNLRSNEL 67
Score = 35.7 bits (80), Expect = 0.002
Identities = 8/82 (9%), Positives = 29/82 (35%), Gaps = 7/82 (8%)
Query: 100 LYKFNVSNNMI--AKISDNIGNLTSLLVLNISNNKI-----ESLPENIGYMKSLTHIDAS 152
+ ++ + A+ ++ + L V+ + + + + + + +L ++
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 153 HNTISYVPWKLFSKFHQNRSSR 174
N + V + Q S +
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCK 85
Score = 32.6 bits (72), Expect = 0.024
Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 24/110 (21%)
Query: 30 YTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNL-----KGLPDEIRHLTNLNELALNN 84
+ D G E +P L+VL L ++ L + +L EL L+N
Sbjct: 347 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 406
Query: 85 NQLEMINEAVYDLPHLYKFNVSNNMIAKISDNI-GNLTSLLVLNISNNKI 133
N L + I ++ +++ L L + +
Sbjct: 407 NCL------------------GDAGILQLVESVRQPGCLLEQLVLYDIYW 438
Score = 31.1 bits (68), Expect = 0.066
Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 5/85 (5%)
Query: 95 YDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKI-----ESLPENIGYMKSLTHI 149
+L + + L VL +++ + SL + SL +
Sbjct: 343 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 402
Query: 150 DASHNTISYVPWKLFSKFHQNRSSR 174
D S+N + + +
Sbjct: 403 DLSNNCLGDAGILQLVESVRQPGCL 427
Score = 31.1 bits (68), Expect = 0.070
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 41 GESNMSQSEPVLK-LKVLNLQYNNL-----KGLPDEIRHLTNLNELALNNNQL 87
++ ++ P+L+ +V+ L L K + +R L EL L +N+L
Sbjct: 15 SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 67
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 35.8 bits (81), Expect = 0.001
Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 99 HLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASH 153
L +N I+ IS + +L +L+ +++ NN+I + + +L + ++
Sbjct: 174 KLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTN 226
Score = 34.2 bits (77), Expect = 0.004
Identities = 9/65 (13%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 97 LPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTI 156
L + K + + +L + L+ + ++ E + Y+ +L ++ N I
Sbjct: 18 LANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQI 75
Query: 157 SYVPW 161
+ +
Sbjct: 76 TDLAP 80
Score = 33.5 bits (75), Expect = 0.008
Identities = 15/63 (23%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 68 PDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLN 127
+ +L+ L L ++N++ I + LP+L + ++ NN I+ +S + N ++L ++
Sbjct: 166 LTPLANLSKLTTLKADDNKISDI-SPLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVT 223
Query: 128 ISN 130
++N
Sbjct: 224 LTN 226
Score = 32.7 bits (73), Expect = 0.015
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSN 107
KL L N + + + L NL E+ L NNQ+ + + + +L+ ++N
Sbjct: 174 KLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTN 226
Score = 31.5 bits (70), Expect = 0.034
Identities = 14/98 (14%), Positives = 33/98 (33%), Gaps = 4/98 (4%)
Query: 74 LTNLNELALNNNQL-EMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNK 132
L N ++A + + + + +A DL + + + I + L +L+ L + +N+
Sbjct: 18 LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ 74
Query: 133 IESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQN 170
I L K + + +
Sbjct: 75 ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTL 112
Score = 28.5 bits (62), Expect = 0.44
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 115 DNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
+ NL+ L L +NKI + + + +L + +N IS V
Sbjct: 167 TPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS 211
Score = 27.3 bits (59), Expect = 0.86
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMIN 91
+ L+ + + +++L NL L L +NQ+ +
Sbjct: 42 GITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLA 79
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 34.9 bits (78), Expect = 0.003
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 53 KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQ 86
+L++ + LP +L L + N +
Sbjct: 202 GPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 34.1 bits (76), Expect = 0.005
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNT 155
+D + ++L+IS +I SLP +K L +
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 34.1 bits (76), Expect = 0.006
Identities = 7/56 (12%), Positives = 17/56 (30%), Gaps = 2/56 (3%)
Query: 122 SLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGC 177
S V +K+ +P ++ ++ + + + FS F
Sbjct: 9 SNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQ 62
Score = 33.7 bits (75), Expect = 0.007
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 89 MINEAVYDLPHLYKFNVSNNMIAKISDNI-GNLTSLLVLNISNNKIESLP 137
+ N+ + ++S I + NL L + N K LP
Sbjct: 192 LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK--KLP 239
Score = 28.0 bits (60), Expect = 0.63
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 55 KVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNM 109
+V Q + + +P ++ N EL +L +I A L K +S N
Sbjct: 11 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 64
Score = 26.8 bits (57), Expect = 1.7
Identities = 4/37 (10%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 103 FNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPEN 139
F + + +I ++ + + L K+ + +
Sbjct: 13 FLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKG 47
Score = 25.3 bits (53), Expect = 5.4
Identities = 4/30 (13%), Positives = 7/30 (23%)
Query: 140 IGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
+D S I +P +
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKK 226
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 33.5 bits (75), Expect = 0.007
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 106 SNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPW 161
I K+ + L + L +S N IE + ++ M++L + N I +
Sbjct: 33 MIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIEN 87
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 32.3 bits (72), Expect = 0.018
Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 97 LPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTI 156
L K + + + +L + L I+S+ + + Y+ +LT I+ S+N +
Sbjct: 17 LAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQL 74
Query: 157 SYVPW 161
+ +
Sbjct: 75 TDITP 79
Score = 30.0 bits (66), Expect = 0.13
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 117 IGNLTSLLVLNISNNKIESLPENIGYMKSLTHI 149
+ NLT+L L+IS+NK+ + + + +L +
Sbjct: 168 LANLTTLERLDISSNKVSDISV-LAKLTNLESL 199
Score = 28.1 bits (61), Expect = 0.44
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNEL 80
L+ L++ N + + + LTNL L
Sbjct: 173 TLERLDISSNKVSDIS-VLAKLTNLESL 199
Score = 25.8 bits (55), Expect = 3.3
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQ 86
++ L +K + D + +L NL ++ +NNQ
Sbjct: 41 QVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQ 73
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 31.5 bits (70), Expect = 0.038
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 116 NIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDAS 152
+ LT L L +S N I L + +K+L ++
Sbjct: 173 PLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELF 208
Score = 29.6 bits (65), Expect = 0.17
Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQL 87
+ + +++K + I++L N+ +L LN N+L
Sbjct: 47 SIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKL 80
Score = 28.8 bits (63), Expect = 0.34
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 69 DEIRHLTNLNELALNNNQLEMINEAVY--DLPHLYKFNVSNNMIAKISDNIGNLTSLLVL 126
+I E +N + + + +AV +L + + +N+ I + I L ++ L
Sbjct: 15 KQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKL 73
Query: 127 NISNNKI 133
++ NK+
Sbjct: 74 FLNGNKL 80
Score = 28.4 bits (62), Expect = 0.40
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNN 84
KL+ L L N++ L + L NL+ L L +
Sbjct: 179 KLQNLYLSKNHISDLR-ALAGLKNLDVLELFS 209
Score = 28.1 bits (61), Expect = 0.48
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 96 DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISN 130
L L +S N I+ + + L +L VL + +
Sbjct: 176 GLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS 209
Score = 27.3 bits (59), Expect = 0.88
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 70 EIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSN 107
+ LT L L L+ N + + A+ L +L + +
Sbjct: 173 PLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFS 209
>d1shwb_ b.18.1.4 (B:) Ligand-binding domain of the ephb2 receptor
tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}
Length = 181
Score = 27.1 bits (60), Expect = 1.0
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 10 MRDSARLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKL 54
+RD + + S+ GS + LY YE D + P +K+
Sbjct: 76 VRDCSSIPSVPGSCKETFNLYYYEADFDLATKTFPNWMENPWVKV 120
>d1jeya1 b.131.1.1 (A:254-534) Ku70 subunit middle domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 281
Score = 26.8 bits (59), Expect = 1.8
Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 12/91 (13%)
Query: 14 ARLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRH 73
R L E D + + + P +L L D+ R
Sbjct: 145 CRYTPRRNIPPYFVALVPQEEELD----DQKIQVTPPGFQLVFLPF--------ADDKRK 192
Query: 74 LTNLNELALNNNQLEMINEAVYDLPHLYKFN 104
+ ++ Q+ + V L Y+ +
Sbjct: 193 MPFTEKIMATPEQVGKMKAIVEKLRFTYRSD 223
>d1sqwa1 b.122.1.1 (A:95-170) Nip7p homolog, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 24.6 bits (54), Expect = 2.6
Identities = 6/38 (15%), Positives = 20/38 (52%)
Query: 96 DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKI 133
+ LY +V + + +I++N ++V ++++ +
Sbjct: 10 EQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPL 47
>d2bbaa1 b.18.1.4 (A:17-196) Ephrin type-B receptor 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 180
Score = 25.1 bits (55), Expect = 4.2
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 9/76 (11%)
Query: 10 MRDSARLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPD 69
M + L S + ++ YE +DT + + P +K+ + +
Sbjct: 78 MLECLSLPRAGRSCKETFTVFYYESDADTATALTPAWMENPYIKVDTVA---------AE 128
Query: 70 EIRHLTNLNELALNNN 85
+ E N
Sbjct: 129 HLTRKRPGAEATGKVN 144
>d3lyna_ a.19.1.1 (A:) Lysin {Green abalone (Haliotis fulgens)
[TaxId: 6456]}
Length = 122
Score = 24.4 bits (53), Expect = 6.0
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 96 DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNI 128
D+ Y F MI S + L +L ++
Sbjct: 87 DMVFFYNFLSGRKMIPPYSAYMAKLNALRPADV 119
>d2lisa_ a.19.1.1 (A:) Lysin {Red abalone (Haliotis rufescens)
[TaxId: 6454]}
Length = 131
Score = 24.4 bits (53), Expect = 6.2
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 96 DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNI 128
D+ + Y F NMI K + + + ++
Sbjct: 94 DMAYFYDFLKDKNMIPKYLPYMEEINRMRPADV 126
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 24.7 bits (52), Expect = 7.0
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 115 DNIGNLTS--LLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
D G L S ++ + ++ + H+D S++ I
Sbjct: 15 DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.129 0.358
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 590,304
Number of extensions: 24605
Number of successful extensions: 224
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 94
Length of query: 184
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,309,196
Effective search space: 136156384
Effective search space used: 136156384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.2 bits)