BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3787
(263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L+ L L+L +N+L + S +F D+ L L L+ NQL LP V L L LG N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 60 KINNMENDYFXXXXXXXXXXXXXXXISEVSSNVGD-LINLAILDLSDNELTDVP 112
++ ++ + F + + + D L NL L LS N+L VP
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 3/109 (2%)
Query: 8 LDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNME 65
LDL L + S F + LT LNL YNQL L V D L L L N++ ++
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 66 NDYFXXXXXXXXXXXXXXXISEVSSNVGD-LINLAILDLSDNELTDVPC 113
F + + S V D L L L L+ N+L +P
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L+ L L+L +N+L + S +F D+ L L L+ NQL LP V L L LG N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 60 KINNMENDYFXXXXXXXXXXXXXXXISEVSSNVGD-LINLAILDLSDNELTDVP 112
++ ++ + F + + + D L NL L LS N+L VP
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 3/109 (2%)
Query: 8 LDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNME 65
LDL L + S F + LT LNL YNQL L V D L L L N++ ++
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 66 NDYFXXXXXXXXXXXXXXXISEVSSNVGD-LINLAILDLSDNELTDVPC 113
F + + S V D L L L L+ N+L +P
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L +L+TL ++ NKL + + +F + +L EL L NQL LP V LT+L LG+N
Sbjct: 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 60 KINNMENDYFXXXXXXXXXXXXXXXISEVSSNVGD-LINLAILDLSDNELTDVP 112
++ ++ F + V D L L L L +N+L VP
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 44/110 (40%), Gaps = 3/110 (2%)
Query: 6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINN 63
K LDL NKL S F + L L L+ N+L LP + + KNL L + NK+
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 64 MENDYFXXXXXXXXXXXXXXXISEVSSNVGD-LINLAILDLSDNELTDVP 112
+ F + + V D L L L L NEL +P
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L++L L+L+HN+L S +F + +LTEL+LSYNQL LP V L L L N
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 60 KINNMENDYF 69
++ ++ + F
Sbjct: 192 QLKSVPDGVF 201
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L++LK L L N+L S +F + +LT LNL++NQL LP V NLT L L +N
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Query: 60 KINNMENDYF 69
++ ++ F
Sbjct: 168 QLQSLPEGVF 177
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L++L L L+ N+L S +F + +L EL L NQL LP V NLT+L L N
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Query: 60 KINNMENDYFXXXXXXXXXXXXXXXISEVSSNVGD-LINLAILDLSDNELTDVP 112
++ ++ F + + V D L L L L N+L VP
Sbjct: 144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 32 LNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFXXXXXXXXXXXXXXXISEVSSN 91
L L N+L + + NLT+L+L N++ ++ N F + +
Sbjct: 68 LALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDG 127
Query: 92 VGD-LINLAILDLSDNELTDVP 112
V D L NL L+L+ N+L +P
Sbjct: 128 VFDKLTNLTYLNLAHNQLQSLP 149
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 5 LKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHL 54
L+ LD+SHN+L + S M SL L+LS+N +LPVC + NLT L
Sbjct: 102 LEYLDVSHNRLQNISC---CPMASLRHLDLSFNDFDVLPVCKEFGNLTKL 148
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFID-MRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGF 58
L L TLDLSHN+L SLPL + +LT L++S+N+LT LP+ L L L
Sbjct: 76 LPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 59 NKINNMENDYFXXXXXXXXXXXXXXXISEVSSN-VGDLINLAILDLSDNELTDVP 112
N++ + ++E+ + + L NL L L +N L +P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFID-MRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGF 58
L L TLDLSHN+L SLPL + +LT L++S+N+LT LP+ L L L
Sbjct: 76 LPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 59 NKINNMENDYFXXXXXXXXXXXXXXXISEVSSN-VGDLINLAILDLSDNELTDVP 112
N++ + ++E+ + + L NL L L +N L +P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L L+ L L N+L + L L +L+L+ NQLT LP + +NL LLL N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
Query: 60 KINNMENDYF 69
+ + +F
Sbjct: 183 SLYTIPKGFF 192
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFID-MRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGF 58
L L TLDLSHN+L SLPL + +LT L++S+N+LT LP+ L L L
Sbjct: 76 LPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 59 NKINNMENDYFXXXXXXXXXXXXXXXISEVSSN-VGDLINLAILDLSDNELTDVP 112
N++ + ++E+ + + L NL L L +N L +P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L L+ L L N+L + L L +L+L+ NQLT LP + +NL LLL N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
Query: 60 KINNMENDYF 69
+ + +F
Sbjct: 183 SLYTIPKGFF 192
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFID-MRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGF 58
L L TLDLSHN+L SLPL + +LT L++S+N+LT LP+ L L L
Sbjct: 76 LPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 59 NKINNMENDYFXXXXXXXXXXXXXXXISEVSSN-VGDLINLAILDLSDNELTDVP 112
N++ + ++E+ + + L NL L L +N L +P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFID-MRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGF 58
L L TLDLSHN+L SLPL + +LT L++S+N+LT LP+ L L L
Sbjct: 76 LPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 59 NKINNMENDYFXXXXXXXXXXXXXXXISEVSSN-VGDLINLAILDLSDNELTDVP 112
N++ + ++E+ + + L NL L L +N L +P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFID-MRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGF 58
L L TLDLSHN+L SLPL + +LT L++S+N+LT LP+ L L L
Sbjct: 76 LPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 59 NKINNMENDYFXXXXXXXXXXXXXXXISEVSSN-VGDLINLAILDLSDNELTDVP 112
N++ + ++E+ + + L NL L L +N L +P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFID-MRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGF 58
L L TLDLSHN+L SLPL + +LT L++S+N+LT LP+ L L L
Sbjct: 76 LPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 59 NKINNMENDYFXXXXXXXXXXXXXXXISEVSSN-VGDLINLAILDLSDNELTDVP 112
N++ + ++E+ + + L NL L L +N L +P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 5 LKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHL-LLGFN 59
L+ LDLSHNKLV S ++++ L+LS+N LP+C + N++ L LG +
Sbjct: 71 LEYLDLSHNKLVKISCHPTVNLK---HLDLSFNAFDALPICKEFGNMSQLKFLGLS 123
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
LS L+ L +SHN++ + +F + L L+LS+N+L + C NL HL L FN
Sbjct: 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS-CHPTVNLKHLDLSFNAF 102
Query: 62 NNM 64
+ +
Sbjct: 103 DAL 105
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFID-MRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGF 58
L L TLDLSHN+L SLPL + +LT L++S+N+LT LP+ L L L
Sbjct: 76 LPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 59 NKINNMENDYFXXXXXXXXXXXXXXXISEVSSN-VGDLINLAILDLSDNELTDVP 112
N++ + ++E+ + + L NL L L +N L +P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFID-MRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGF 58
L L TLDLSHN+L SLPL + +LT L++S+N+LT LP+ L L L
Sbjct: 77 LPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 134
Query: 59 NKINNMENDYFXXXXXXXXXXXXXXXISEVSSN-VGDLINLAILDLSDNELTDVP 112
N++ + ++E+ + + L NL L L +N L +P
Sbjct: 135 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 189
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFID-MRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGF 58
L L TLDLSHN+L SLPL + +LT L++S+N+LT LP+ L L L
Sbjct: 76 LPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 59 NKINNMENDYFXXXXXXXXXXXXXXXISEVSSN-VGDLINLAILDLSDNELTDVP 112
N++ + ++E+ + + L NL L L +N L +P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 47/116 (40%), Gaps = 3/116 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
L HL TL L L LF + +L L L N L LP T D NLTHL L N
Sbjct: 103 LGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGN 162
Query: 60 KINNMENDYFXXXXXXXXXXXXXXXISEVSSNV-GDLINLAILDLSDNELTDVPCE 114
+I ++ F ++ V + DL L L L N L+ +P E
Sbjct: 163 RIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAE 218
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 8 LDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNME 65
LDL N L S +F ++ SLT+L L N+L LP V +LT+L L N++ ++
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 66 NDYFXXXXXXXXXXXXXXXISEVSSNVGD-LINLAILDLSDNELTDVP 112
N F + + V D L L L L N+L VP
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L+ L L L NKL S +F + SLT LNLS NQL LP V L L L N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 60 KINNMENDYF 69
++ ++ + F
Sbjct: 111 QLQSLPDGVF 120
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L++L L L+ N+L S +F + +L EL L NQL LP V NLT+L L N
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHN 143
Query: 60 KINNMENDYFXXXXXXXXXXXXXXXISEVSSNVGD-LINLAILDLSDNELTDVP 112
++ ++ F + + V D L L L L+DN+L VP
Sbjct: 144 QLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVP 197
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L++L L L HN+L S +F + +LT L+L NQL LP V L L L N
Sbjct: 132 LTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDN 191
Query: 60 KINNMENDYF 69
++ ++ + F
Sbjct: 192 QLKSVPDGVF 201
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 3/116 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L L TL L L LF + +L L L N L LP D NLTHL L N
Sbjct: 103 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 162
Query: 60 KINNMENDYFXXXXXXXXXXXXXXXISEVSSNV-GDLINLAILDLSDNELTDVPCE 114
+I+++ F ++ V + DL L L L N L+ +P E
Sbjct: 163 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 218
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 3/116 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L L TL L L LF + +L L L N L LP D NLTHL L N
Sbjct: 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163
Query: 60 KINNMENDYFXXXXXXXXXXXXXXXISEVSSNV-GDLINLAILDLSDNELTDVPCE 114
+I+++ F ++ V + DL L L L N L+ +P E
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP 43
L+ L+ L L H ++ + F D++SL ELNLS+N L LP
Sbjct: 201 LTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLP 242
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP 43
L+ L+ L L H ++ + F D++SL ELNLS+N L LP
Sbjct: 201 LTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLP 242
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 8 LDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNME 65
L+L NKL S +F + LT+L+LS NQ+ LP V LT L L NK+ ++
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 66 NDYF 69
N F
Sbjct: 93 NGVF 96
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 22 LFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNKINNMENDYF 69
+F + LT LNL+ NQLT LPV LTHL L N++ ++ F
Sbjct: 59 VFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVF 108
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L+ L L+L+ N+L + + +F + LT L L NQL +P V + K+LTH+ L FN
Sbjct: 63 LTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYL-FN 121
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L +KTLDL+ + ++D PL + +L L L NQ+T + NL +L +G N++
Sbjct: 112 LQSIKTLDLTSTQ-ITDVTPLA-GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQV 169
Query: 62 NNMENDYFXXXXXXXXXXXXXXXISEVSSNVGDLINLAILDLSDNELTDV 111
N++ IS++S + L NL + L DN+++DV
Sbjct: 170 NDLT--PLANLSKLTTLRADDNKISDISP-LASLPNLIEVHLKDNQISDV 216
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKI 61
L L+ +N+L LP F L LNL+YNQ+T +P C + + +L NK+
Sbjct: 331 KLGXLECLYNQL-EGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL 389
Query: 62 NNMEN 66
+ N
Sbjct: 390 KYIPN 394
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Query: 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT------DCKN---LTHL 54
++ +++LS+N++ LF L+ +NL N LT +P + + KN LT +
Sbjct: 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLKDENENFKNTYLLTSI 493
Query: 55 LLGFNKINNMENDY 68
L FNK+ + +D+
Sbjct: 494 DLRFNKLTKLSDDF 507
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 85 ISEVSSNVGDLINLAILDLSDNELTDVPCE 114
++E+ + + +L NL +LDLS N LT +P E
Sbjct: 259 LTELPAEIKNLSNLRVLDLSHNRLTSLPAE 288
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L++L +L LSHN L S F+ + +L L+LS N L L + +D + L LLL N
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122
Query: 60 KINNMENDYFXXXXXXXXXXXXXXXIS----EVSSNVGDLINLAILDLSDNELTDVP 112
I ++ + F IS E+ + L L +LDLS N+L +P
Sbjct: 123 HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
+L++L L L+ N+L + + +LT+L+L+ NQ++ L + LT L LG N+
Sbjct: 218 ILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 275
Query: 61 INNME 65
I+N+
Sbjct: 276 ISNIS 280
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ L L L N+ +S+ PL + +LT L L+ NQL + ++ KNLT+L L FN I
Sbjct: 263 LTKLTELKLGANQ-ISNISPL-AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 320
Query: 62 NNME 65
+++
Sbjct: 321 SDIS 324
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
+L++L L L+ N+L + + +LT+L+L+ NQ++ L + LT L LG N+
Sbjct: 219 ILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 276
Query: 61 INNME 65
I+N+
Sbjct: 277 ISNIS 281
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ L L L N+ +S+ PL + +LT L L+ NQL + ++ KNLT+L L FN I
Sbjct: 264 LTKLTELKLGANQ-ISNISPL-AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 321
Query: 62 NNME 65
+++
Sbjct: 322 SDIS 325
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
+L++L L L+ N+L + + +LT+L+L+ NQ++ L + LT L LG N+
Sbjct: 214 ILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 271
Query: 61 INNME 65
I+N+
Sbjct: 272 ISNIS 276
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ L L L N+ +S+ PL + +LT L L+ NQL + ++ KNLT+L L FN I
Sbjct: 259 LTKLTELKLGANQ-ISNISPL-AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 316
Query: 62 NNME 65
+++
Sbjct: 317 SDIS 320
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ L L L N+ +S+ PL + +LT L L+ NQL + ++ KNLT+L L FN I
Sbjct: 259 LTKLTELKLGANQ-ISNISPL-AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 316
Query: 62 NNME 65
+++
Sbjct: 317 SDIS 320
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
+L++L L L+ N+L + + +LT+L+L+ NQ++ L + LT L LG N+
Sbjct: 214 ILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 271
Query: 61 INNME 65
I+N+
Sbjct: 272 ISNIS 276
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
+L++L L L+ N+L + + +LT+L+L+ NQ++ L + LT L LG N+
Sbjct: 215 ILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 272
Query: 61 INNME 65
I+N+
Sbjct: 273 ISNIS 277
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ L L L N+ +S+ PL + +LT L L+ NQL + ++ KNLT+L L FN I
Sbjct: 260 LTKLTELKLGANQ-ISNISPL-AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 317
Query: 62 NNME 65
+++
Sbjct: 318 SDIS 321
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L++L L+LS N +SD + + SL +LN S NQ+T L + L L + NK+
Sbjct: 128 LTNLNRLELSSNT-ISD-ISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKV 185
Query: 62 NNMENDYFXXXXXXXXXXXXXXXISEVSSNVGDLINLAILDLSDNELTDV 111
+++ IS+++ +G L NL L L+ N+L D+
Sbjct: 186 SDIS--VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI 232
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
+L++L L L+ N+L + + +LT+L+L+ NQ++ L + LT L LG N+
Sbjct: 215 ILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 272
Query: 61 INNME 65
I+N+
Sbjct: 273 ISNIS 277
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ L L L N+ +S+ PL + +LT L L+ NQL + ++ KNLT+L L FN I
Sbjct: 260 LTKLTELKLGANQ-ISNISPL-AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 317
Query: 62 NNME 65
+++
Sbjct: 318 SDIS 321
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLL 56
L+ L LDL +N+L +F + LT+L+L+ NQL +P + K+LTH+ L
Sbjct: 61 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 117
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
+L++L L L+ N+L + + +LT+L+L+ NQ++ L + LT L LG N+
Sbjct: 215 ILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 272
Query: 61 INNME 65
I+N+
Sbjct: 273 ISNIS 277
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ L L L N+ +S+ PL + +LT L L+ NQL + ++ KNLT+L L FN I
Sbjct: 260 LTKLTELKLGANQ-ISNISPL-AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 317
Query: 62 NNME 65
+++
Sbjct: 318 SDIS 321
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLL 56
L+ L LDL +N+L +F + LT+L+L+ NQL +P + K+LTH+ L
Sbjct: 53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTD-CKNLTHLLLGFNK 60
L+ L LDL N+L +F + L EL + N+LT LP + +LTHL L N+
Sbjct: 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ 146
Query: 61 INNMENDYF 69
+ ++ + F
Sbjct: 147 LKSIPHGAF 155
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 22 LFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNKINNMENDYFXXXXXXXXXX 79
+F + +L EL L NQL LPV LT L LG N++ + + F
Sbjct: 59 VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118
Query: 80 XXXXXISEVSSNVGDLINLAILDLSDNELTDVP 112
++E+ + L +L L L N+L +P
Sbjct: 119 MCCNKLTELPRGIERLTHLTHLALDQNQLKSIP 151
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP 43
L +LK L L N+L + + +F + LT L+L NQLT+LP
Sbjct: 63 LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP 43
HL +DLS+N++ + S F +M L L LSYN+L +P
Sbjct: 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 27 RSLTELNLSYNQLTMLPV-CTDCKNLTHLLLGFNKINNMENDYFXXXXXXXXXXXXXXXI 85
R +TEL L NQ T++P ++ K+LT + L N+I+ + N F +
Sbjct: 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 86 SEVSSNVGD-LINLAILDLSDNELTDVP 112
+ D L +L +L L N+++ VP
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDISVVP 118
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP 43
L HL+ L + +++ F +++SL E+NL++N LT+LP
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLL 56
L+ L LDL +N+L +F + LT+L+L+ NQL +P + ++LTH+ L
Sbjct: 53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWL 109
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP 43
L +L++++ NKL +F M L +LNL+ NQL +P
Sbjct: 169 LENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVP 210
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNK 60
S ++ LDLSH + S + +F ++ L LNL+YN++ + NL L L +N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325
Query: 61 INNMENDYFXXXXXXXXXXXXXXXISEVSSNVGDLI-NLAILDLSDNELTDV 111
+ + + F I+ + + L LDL DN LT +
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTML 42
LSHL+ L L+HN L S +F + +L L+L+ N+LT+L
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL 519
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
L L+TLDL N L + + S+ ++ LS N+L LP NL H L N+
Sbjct: 360 FLEKLQTLDLRDNALTTIHF-----IPSIPDIFLSGNKLVTLPKINLTANLIH--LSENR 412
Query: 61 INNMENDYF 69
+ N++ YF
Sbjct: 413 LENLDILYF 421
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 9 DLSHNKL--VSDSLPLFIDMRSLTELNLSYNQLTMLPVC--TDCKNLTHLLLGFNKINNM 64
D SH KL + D LP ++T LNL++NQL LP T L L GFN I+ +
Sbjct: 10 DCSHLKLTHIPDDLP-----SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKL 64
Query: 65 E 65
E
Sbjct: 65 E 65
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 25/109 (22%)
Query: 5 LKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKIN 62
L+ +DLS+N++ + F +RSL L L N++T LP + +L LLL NKIN
Sbjct: 58 LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117
Query: 63 NMENDYFXXXXXXXXXXXXXXXISEVSSNVGDLINLAILDLSDNELTDV 111
+ D F DL NL +L L DN+L +
Sbjct: 118 XLRVDAFQ-----------------------DLHNLNLLSLYDNKLQTI 143
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 28 SLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNMENDYFXXXXXXXXXXXXXXXI 85
++ L+LS+N++T + C NL L+L ++IN +E D F +
Sbjct: 53 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 112
Query: 86 SEVSSN-VGDLINLAILDLSDN 106
S +SS+ G L +L L+L N
Sbjct: 113 SSLSSSWFGPLSSLKYLNLMGN 134
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 27/53 (50%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHL 54
L L+ LDLS N L S S F + SL LNL N L V + NLT+L
Sbjct: 99 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 151
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 28 SLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNMENDYFXXXXXXXXXXXXXXXI 85
++ L+LS+N++T + C NL L+L ++IN +E D F +
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86
Query: 86 SEVSSN-VGDLINLAILDLSDN 106
S +SS+ G L +L L+L N
Sbjct: 87 SSLSSSWFGPLSSLKYLNLMGN 108
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 27/53 (50%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHL 54
L L+ LDLS N L S S F + SL LNL N L V + NLT+L
Sbjct: 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT 40
SH++ L L NK+ S +F+ + L LNL NQ++
Sbjct: 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
HL+ L+L+ N + + F ++ +L L L N+L ++P V T NLT L + N
Sbjct: 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114
Query: 60 KI 61
KI
Sbjct: 115 KI 116
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 25/109 (22%)
Query: 5 LKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKIN 62
L+ +DLS+N++ + F +RSL L L N++T LP + +L LLL NKIN
Sbjct: 58 LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117
Query: 63 NMENDYFXXXXXXXXXXXXXXXISEVSSNVGDLINLAILDLSDNELTDV 111
+ D F DL NL +L L DN+L +
Sbjct: 118 CLRVDAFQ-----------------------DLHNLNLLSLYDNKLQTI 143
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTML--PVCTDCKNLTHLLLGFN 59
L+HL L+LS N L S +F ++ L L+LSYN + L NL L L N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 60 KINNMENDYF 69
++ ++ + F
Sbjct: 382 QLKSVPDGIF 391
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKIN 62
+ L +L + +NK ++D PL ++ LT L + NQ++ + D L L +G N+I+
Sbjct: 221 TRLNSLKIGNNK-ITDLSPLA-NLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQIS 278
Query: 63 NME--NDYFXXXXXXXXXXXXXXXISEVSSNVGDLINLAILDLSDNELTDV 111
++ N+ EV +G L NL L LS N +TD+
Sbjct: 279 DISVLNNLSQLNSLFLNNNQLGNEDXEV---IGGLTNLTTLFLSQNHITDI 326
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,590,869
Number of Sequences: 62578
Number of extensions: 226172
Number of successful extensions: 830
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 511
Number of HSP's gapped (non-prelim): 273
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)