Query psy3787
Match_columns 263
No_of_seqs 165 out of 1767
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 17:23:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3787.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3787hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4194|consensus 99.9 1.2E-22 2.7E-27 175.4 3.1 223 4-244 174-427 (873)
2 KOG0472|consensus 99.8 2.8E-22 6.1E-27 166.3 -1.3 217 2-226 182-405 (565)
3 PLN00113 leucine-rich repeat r 99.8 6.5E-20 1.4E-24 176.8 14.1 151 2-155 92-247 (968)
4 KOG4194|consensus 99.8 2.2E-21 4.7E-26 167.7 2.7 229 2-248 220-454 (873)
5 PLN00113 leucine-rich repeat r 99.8 4.3E-19 9.4E-24 171.1 13.8 130 3-133 140-274 (968)
6 KOG0444|consensus 99.8 2E-20 4.3E-25 163.3 -0.4 241 3-254 103-383 (1255)
7 KOG0444|consensus 99.8 2.4E-20 5.2E-25 162.8 -0.8 211 2-236 77-294 (1255)
8 KOG0472|consensus 99.7 4.8E-20 1E-24 153.2 -6.2 232 2-245 67-309 (565)
9 KOG0617|consensus 99.7 2.8E-19 6E-24 133.1 -2.3 137 3-142 33-173 (264)
10 KOG0617|consensus 99.7 1E-18 2.2E-23 130.0 0.1 183 42-248 26-214 (264)
11 PRK15370 E3 ubiquitin-protein 99.6 1.5E-15 3.2E-20 140.5 10.1 122 4-137 179-301 (754)
12 PRK15387 E3 ubiquitin-protein 99.6 3.9E-15 8.3E-20 137.3 9.6 120 4-136 223-359 (788)
13 PRK15370 E3 ubiquitin-protein 99.6 2.2E-14 4.8E-19 132.8 14.0 185 3-228 199-386 (754)
14 KOG0618|consensus 99.6 1.1E-16 2.3E-21 145.1 -1.3 214 4-245 242-488 (1081)
15 KOG4237|consensus 99.5 2.9E-16 6.3E-21 130.5 -2.5 240 5-248 69-361 (498)
16 PLN03210 Resistant to P. syrin 99.5 1.1E-13 2.3E-18 135.3 13.3 127 4-136 612-742 (1153)
17 KOG0618|consensus 99.5 3.6E-15 7.8E-20 135.5 2.4 215 27-247 219-444 (1081)
18 PRK15387 E3 ubiquitin-protein 99.5 9E-14 1.9E-18 128.4 10.0 193 2-222 241-458 (788)
19 KOG4237|consensus 99.5 5E-15 1.1E-19 123.3 -1.5 208 28-243 68-308 (498)
20 PLN03210 Resistant to P. syrin 99.4 1.7E-12 3.8E-17 126.9 13.6 121 5-130 591-715 (1153)
21 KOG0532|consensus 99.3 5.6E-14 1.2E-18 121.9 -2.2 167 53-246 79-247 (722)
22 PF14580 LRR_9: Leucine-rich r 99.3 8.7E-13 1.9E-17 101.1 4.4 130 20-151 12-147 (175)
23 PF14580 LRR_9: Leucine-rich r 99.3 1.1E-12 2.4E-17 100.6 4.2 122 3-126 19-147 (175)
24 cd00116 LRR_RI Leucine-rich re 99.3 4.6E-13 9.9E-18 113.5 1.6 208 3-222 23-263 (319)
25 cd00116 LRR_RI Leucine-rich re 99.3 1.2E-12 2.6E-17 110.9 3.6 211 3-225 51-294 (319)
26 KOG0532|consensus 99.2 7.8E-13 1.7E-17 115.0 -0.8 173 6-201 78-254 (722)
27 COG4886 Leucine-rich repeat (L 99.2 1.1E-11 2.5E-16 108.2 5.4 193 8-226 98-294 (394)
28 KOG1259|consensus 99.1 4.1E-12 8.8E-17 102.9 -0.8 131 4-138 285-418 (490)
29 COG4886 Leucine-rich repeat (L 99.1 7.4E-11 1.6E-15 103.1 6.1 190 31-246 97-290 (394)
30 KOG1259|consensus 98.9 2.1E-10 4.6E-15 93.1 -0.6 105 27-134 284-389 (490)
31 PF13855 LRR_8: Leucine rich r 98.9 2.2E-09 4.8E-14 68.0 3.4 57 28-84 2-60 (61)
32 KOG0531|consensus 98.8 8E-10 1.7E-14 97.2 1.0 193 3-225 72-271 (414)
33 KOG3207|consensus 98.8 2E-09 4.4E-14 91.3 2.2 206 23-244 117-337 (505)
34 PF13855 LRR_8: Leucine rich r 98.8 6.4E-09 1.4E-13 65.8 4.0 58 50-107 2-60 (61)
35 KOG1909|consensus 98.8 3.9E-09 8.4E-14 87.2 3.1 116 23-138 88-232 (382)
36 KOG3207|consensus 98.7 1.2E-09 2.6E-14 92.6 -0.9 209 2-222 120-339 (505)
37 KOG0531|consensus 98.7 3.5E-09 7.7E-14 93.1 0.3 128 2-134 94-223 (414)
38 KOG4579|consensus 98.7 2.1E-09 4.5E-14 77.7 -1.4 125 27-151 27-155 (177)
39 PLN03150 hypothetical protein; 98.6 1.1E-07 2.4E-12 87.7 7.7 90 50-139 419-511 (623)
40 KOG1859|consensus 98.6 4.4E-10 9.5E-15 100.8 -8.4 128 5-136 166-296 (1096)
41 PLN03150 hypothetical protein; 98.5 1.6E-07 3.4E-12 86.7 6.9 103 28-130 419-526 (623)
42 KOG1909|consensus 98.5 3.4E-08 7.3E-13 81.8 1.7 232 2-245 29-310 (382)
43 KOG1644|consensus 98.4 5.5E-07 1.2E-11 69.4 6.5 121 6-128 22-149 (233)
44 KOG1859|consensus 98.4 1.2E-08 2.5E-13 91.9 -3.6 129 28-159 165-294 (1096)
45 KOG4658|consensus 98.3 4.6E-07 9.9E-12 86.0 4.6 122 6-129 526-652 (889)
46 PF12799 LRR_4: Leucine Rich r 98.3 9.5E-07 2.1E-11 51.6 3.6 40 3-44 1-41 (44)
47 PF12799 LRR_4: Leucine Rich r 98.3 1.6E-06 3.4E-11 50.7 4.0 39 97-135 2-40 (44)
48 KOG4658|consensus 98.2 8.2E-07 1.8E-11 84.3 3.8 131 20-151 516-649 (889)
49 KOG4579|consensus 98.2 4.7E-08 1E-12 70.8 -3.7 107 5-114 29-141 (177)
50 KOG1644|consensus 98.1 6E-06 1.3E-10 63.8 5.3 112 21-134 13-128 (233)
51 KOG2982|consensus 97.9 2E-06 4.3E-11 70.2 -0.3 84 3-86 71-159 (418)
52 KOG3665|consensus 97.9 9.7E-06 2.1E-10 75.3 3.3 128 4-133 123-264 (699)
53 COG5238 RNA1 Ran GTPase-activa 97.7 3E-05 6.5E-10 62.8 2.8 25 117-141 155-179 (388)
54 KOG2120|consensus 97.6 1.1E-06 2.4E-11 71.7 -5.8 81 51-131 187-272 (419)
55 KOG3665|consensus 97.6 4.6E-05 1E-09 70.9 3.9 109 1-109 146-263 (699)
56 COG5238 RNA1 Ran GTPase-activa 97.6 7.3E-05 1.6E-09 60.6 4.2 132 2-133 91-256 (388)
57 KOG2120|consensus 97.5 7E-06 1.5E-10 67.1 -3.1 176 28-219 186-373 (419)
58 KOG2982|consensus 97.5 3.7E-05 7.9E-10 63.0 0.7 104 28-131 46-158 (418)
59 PRK15386 type III secretion pr 97.4 0.00096 2.1E-08 57.9 8.7 52 3-59 52-104 (426)
60 PRK15386 type III secretion pr 97.3 0.00057 1.2E-08 59.3 6.6 81 23-114 48-133 (426)
61 PF13306 LRR_5: Leucine rich r 97.3 0.0014 3.1E-08 47.5 7.5 112 23-140 8-123 (129)
62 KOG2739|consensus 97.2 0.00017 3.8E-09 57.9 1.8 103 23-126 39-150 (260)
63 KOG2123|consensus 97.2 1.1E-05 2.3E-10 65.5 -5.4 82 26-109 18-101 (388)
64 PF13306 LRR_5: Leucine rich r 97.1 0.0027 5.9E-08 46.0 7.5 111 3-121 12-128 (129)
65 KOG2123|consensus 96.7 0.00016 3.6E-09 58.8 -1.9 98 48-148 18-118 (388)
66 KOG2739|consensus 96.0 0.0042 9.2E-08 50.1 2.2 106 4-113 44-160 (260)
67 PF13504 LRR_7: Leucine rich r 95.9 0.0041 8.8E-08 28.2 1.0 16 209-225 2-17 (17)
68 PF00560 LRR_1: Leucine Rich R 95.7 0.0056 1.2E-07 29.7 1.0 15 98-112 2-16 (22)
69 PF00560 LRR_1: Leucine Rich R 95.5 0.0073 1.6E-07 29.3 1.2 19 75-93 2-20 (22)
70 smart00369 LRR_TYP Leucine-ric 95.0 0.013 2.9E-07 29.6 1.2 21 208-229 2-22 (26)
71 smart00370 LRR Leucine-rich re 95.0 0.013 2.9E-07 29.6 1.2 21 208-229 2-22 (26)
72 smart00369 LRR_TYP Leucine-ric 94.2 0.047 1E-06 27.5 2.1 22 119-140 2-23 (26)
73 smart00370 LRR Leucine-rich re 94.2 0.047 1E-06 27.5 2.1 22 119-140 2-23 (26)
74 KOG4308|consensus 93.2 0.0012 2.6E-08 59.0 -8.4 182 29-222 89-303 (478)
75 KOG0473|consensus 92.8 0.0015 3.2E-08 52.1 -7.3 87 45-132 38-124 (326)
76 smart00364 LRR_BAC Leucine-ric 88.5 0.29 6.2E-06 24.7 1.2 19 209-228 3-21 (26)
77 KOG4341|consensus 86.7 0.065 1.4E-06 46.4 -2.9 35 95-129 293-330 (483)
78 smart00365 LRR_SD22 Leucine-ri 85.7 0.59 1.3E-05 23.6 1.4 19 208-227 2-20 (26)
79 KOG4308|consensus 83.5 0.044 9.6E-07 49.1 -5.6 15 119-133 262-276 (478)
80 KOG0473|consensus 82.1 0.023 5E-07 45.4 -7.0 86 23-109 38-124 (326)
81 PF13516 LRR_6: Leucine Rich r 80.7 0.76 1.7E-05 22.4 0.7 14 208-222 2-15 (24)
82 KOG3864|consensus 78.3 0.4 8.6E-06 37.6 -1.2 80 49-128 101-185 (221)
83 KOG3864|consensus 77.6 0.37 8E-06 37.8 -1.6 78 28-105 102-185 (221)
84 KOG1947|consensus 76.7 0.72 1.6E-05 41.1 -0.3 14 23-36 210-223 (482)
85 smart00368 LRR_RI Leucine rich 75.4 2 4.4E-05 21.9 1.3 14 208-222 2-15 (28)
86 KOG3763|consensus 69.0 2.5 5.5E-05 38.2 1.3 67 181-249 216-286 (585)
87 KOG4341|consensus 66.8 2.5 5.4E-05 37.0 0.8 82 25-106 292-382 (483)
88 KOG3763|consensus 57.3 6.8 0.00015 35.6 1.8 35 25-59 216-254 (585)
89 KOG1947|consensus 55.3 8.2 0.00018 34.3 2.0 109 23-131 184-307 (482)
90 smart00367 LRR_CC Leucine-rich 41.8 17 0.00037 17.8 1.1 11 27-37 2-12 (26)
91 TIGR00864 PCC polycystin catio 29.0 45 0.00097 36.7 2.7 30 33-62 1-32 (2740)
92 TIGR00864 PCC polycystin catio 25.1 49 0.0011 36.4 2.2 32 9-40 1-32 (2740)
No 1
>KOG4194|consensus
Probab=99.86 E-value=1.2e-22 Score=175.38 Aligned_cols=223 Identities=21% Similarity=0.224 Sum_probs=142.0
Q ss_pred CCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--------------------------CCCCCCCCcEEEec
Q psy3787 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--------------------------VCTDCKNLTHLLLG 57 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--------------------------~~~~~~~L~~L~l~ 57 (263)
+++.|+|++|+++......|..+.+|..|.|+.|.++.+| .|..+++|+.+.+.
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq 253 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ 253 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence 4555555555555543334555555555555555555444 24444555555555
Q ss_pred CCCCCCCchhhhhCCCCccEEEeecCcCccccc-cccCCCCcCEEEccCCcCCCc-cccccCCCcccEEEecCCCCCCcc
Q psy3787 58 FNKINNMENDYFLTLTKLSLLNLKNNKISEVSS-NVGDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNPIKTVR 135 (263)
Q Consensus 58 ~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~ 135 (263)
+|.+.....++|.++.++++|++..|++..+-+ ++..+++|++|+++.|.|.++ +..|.-+++|+.|+++.|+|+.++
T Consensus 254 rN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~ 333 (873)
T KOG4194|consen 254 RNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD 333 (873)
T ss_pred hcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC
Confidence 555555555666677777777777777776643 457788889999999988877 556888889999999999999998
Q ss_pred hHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccc-cccccCCcceeccc--cccccChhHHhhcCCccceeE
Q psy3787 136 NDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINI-DKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTI 212 (263)
Q Consensus 136 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~ 212 (263)
++.+... +.|+.|.++.+.+ ..+.. .+.++++|+.||++ .+...-++......++++|+.
T Consensus 334 ~~sf~~L-~~Le~LnLs~Nsi----------------~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 334 EGSFRVL-SQLEELNLSHNSI----------------DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred hhHHHHH-HHhhhhcccccch----------------HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 8877664 5667777766663 22221 25566677777776 443322233333334556776
Q ss_pred EEeccCCcccccCccccccccccccccccCCc
Q psy3787 213 EINIDKYKLDRTKTLTLCKVINIPESVYMNRP 244 (263)
Q Consensus 213 ~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~ 244 (263)
|++.||+|..||..++.++.++..+.+.+|+
T Consensus 397 -L~l~gNqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 397 -LRLTGNQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred -eeecCceeeecchhhhccCcccceecCCCCc
Confidence 7777777777776666666666666666665
No 2
>KOG0472|consensus
Probab=99.83 E-value=2.8e-22 Score=166.34 Aligned_cols=217 Identities=30% Similarity=0.489 Sum_probs=180.4
Q ss_pred CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
|+.|+.+|.-.|-+.. +|+ ++.+.+|..|++..|++..+|.|.++..|.++.++.|.+..++......+.++..||+
T Consensus 182 m~~L~~ld~~~N~L~t--lP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDL 259 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLET--LPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDL 259 (565)
T ss_pred HHHHHhcccchhhhhc--CChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeec
Confidence 4567788888888877 666 9999999999999999999999999999999999999999998887889999999999
Q ss_pred ecCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhH-HHHhhhhhCCCCccccc
Q psy3787 81 KNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDS-KRIISHIKTSRLDYHCQ 159 (263)
Q Consensus 81 ~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~~l~~l~~~~~~~~~~ 159 (263)
..|+++++|..+.-+.+|..+|+++|.|+.+|..++++ .|+.+.+.||++..+..++.... ...+.++... . .|.
T Consensus 260 RdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~-~--~~d 335 (565)
T KOG0472|consen 260 RDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSK-I--KDD 335 (565)
T ss_pred cccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHh-h--ccC
Confidence 99999999999999999999999999999999999999 99999999999999999999887 7778877651 1 111
Q ss_pred cc---CCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCc
Q psy3787 160 NV---DGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKT 226 (263)
Q Consensus 160 ~~---~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~ 226 (263)
.. +++..+.-.......++...+...++|+++ +++.+|+++|.... -.-... +++++|++.++|.
T Consensus 336 glS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~-~~~Vt~-VnfskNqL~elPk 405 (565)
T KOG0472|consen 336 GLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAK-SEIVTS-VNFSKNQLCELPK 405 (565)
T ss_pred CCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhh-hcceEE-EecccchHhhhhh
Confidence 10 111111111133445566778899999999 99999999998775 223677 9999999999997
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=6.5e-20 Score=176.80 Aligned_cols=151 Identities=27% Similarity=0.364 Sum_probs=98.4
Q ss_pred CCCCCEEEeecCccCCCCccc--cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPL--FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN 79 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 79 (263)
+++|+.|++++|++.. .+|. +..+++|++|++++|.+........+++|++|++++|.+.+..+..++.+++|++|+
T Consensus 92 l~~L~~L~Ls~n~~~~-~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 170 (968)
T PLN00113 92 LPYIQTINLSNNQLSG-PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLD 170 (968)
T ss_pred CCCCCEEECCCCccCC-cCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEE
Confidence 5667777777777654 2444 446777777777777766322234566777777777777655555677777777777
Q ss_pred eecCcCc-cccccccCCCCcCEEEccCCcCC-CccccccCCCcccEEEecCCCCCC-cchHHHHhHHHHhhhhhCCCCc
Q psy3787 80 LKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVPCELSSLFHLKSLFLGGNPIKT-VRNDILQDSKRIISHIKTSRLD 155 (263)
Q Consensus 80 l~~~~l~-~lp~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~l~~l~~~~~~ 155 (263)
+++|.+. .+|..+.++++|++|++++|.+. .+|..++.+++|+.|++++|.+.+ +|..+... ..+++|+++.+.
T Consensus 171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~ 247 (968)
T PLN00113 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL--TSLNHLDLVYNN 247 (968)
T ss_pred CccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcC--CCCCEEECcCce
Confidence 7777765 56777777777777777777766 456667777777777777777765 45443332 245555554444
No 4
>KOG4194|consensus
Probab=99.82 E-value=2.2e-21 Score=167.73 Aligned_cols=229 Identities=20% Similarity=0.269 Sum_probs=181.7
Q ss_pred CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN 79 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 79 (263)
|++|+.|+|..|.+.....-.|.++++|+.|.+..|.|..+. .|-.+.++++|+++.|++..+..+++.+++.|+.|+
T Consensus 220 L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~ 299 (873)
T KOG4194|consen 220 LPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLD 299 (873)
T ss_pred cchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhc
Confidence 445555566666555533334556666666666666666554 366788999999999999999888899999999999
Q ss_pred eecCcCccc-cccccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccc
Q psy3787 80 LKNNKISEV-SSNVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYH 157 (263)
Q Consensus 80 l~~~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 157 (263)
+++|.|.++ ++.|...++|++|+++.|.|+++++ .+..+..|+.|.+++|.++.+....+... ..|..|++..+.++
T Consensus 300 lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l-ssL~~LdLr~N~ls 378 (873)
T KOG4194|consen 300 LSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGL-SSLHKLDLRSNELS 378 (873)
T ss_pred cchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHh-hhhhhhcCcCCeEE
Confidence 999999977 6778999999999999999999965 48899999999999999999888777664 67888998877742
Q ss_pred ccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccccccccc
Q psy3787 158 CQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINI 235 (263)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l 235 (263)
+.+++ -...+.++++|+.|++. +++.+|...|.... .|++ |||.+|.|..|...++..+ ++
T Consensus 379 -~~IED-----------aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~---~LE~-LdL~~NaiaSIq~nAFe~m-~L 441 (873)
T KOG4194|consen 379 -WCIED-----------AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLE---ALEH-LDLGDNAIASIQPNAFEPM-EL 441 (873)
T ss_pred -EEEec-----------chhhhccchhhhheeecCceeeecchhhhccCc---ccce-ecCCCCcceeecccccccc-hh
Confidence 22222 22347789999999999 99999988777665 8999 9999999999999888877 77
Q ss_pred ccccccCCceEEe
Q psy3787 236 PESVYMNRPFALT 248 (263)
Q Consensus 236 ~~~~~~~~~~~~~ 248 (263)
.++.+.....+|.
T Consensus 442 k~Lv~nSssflCD 454 (873)
T KOG4194|consen 442 KELVMNSSSFLCD 454 (873)
T ss_pred hhhhhcccceEEe
Confidence 7777777666554
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.80 E-value=4.3e-19 Score=171.14 Aligned_cols=130 Identities=33% Similarity=0.428 Sum_probs=68.8
Q ss_pred CCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCC-CCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787 3 SHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLT-MLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN 79 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~-~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 79 (263)
++|++|++++|.+.. ..|. +.++++|++|++++|.+. .+| .+..+++|++|++++|.+.+..+..+..+.+|++|+
T Consensus 140 ~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 140 PNLETLDLSNNMLSG-EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred CCCCEEECcCCcccc-cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 344444444444433 1222 555555555555555544 233 245555555555555555544444455555555555
Q ss_pred eecCcCc-cccccccCCCCcCEEEccCCcCC-CccccccCCCcccEEEecCCCCCC
Q psy3787 80 LKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVPCELSSLFHLKSLFLGGNPIKT 133 (263)
Q Consensus 80 l~~~~l~-~lp~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~n~l~~ 133 (263)
+++|++. .+|..++.+++|++|++++|.+. .+|..++.+++|+.|++++|.+.+
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence 5555555 45555555556666666655554 345555556666666666665554
No 6
>KOG0444|consensus
Probab=99.78 E-value=2e-20 Score=163.31 Aligned_cols=241 Identities=24% Similarity=0.261 Sum_probs=119.2
Q ss_pred CCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcC--CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787 3 SHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN 79 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 79 (263)
..|+.||+++|++.. +|. +...+++-.|++++|+|..+|. +-++..|-+||+|+|++..+||. ...+..|++|.
T Consensus 103 ~dLt~lDLShNqL~E--vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLRE--VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLK 179 (1255)
T ss_pred ccceeeecchhhhhh--cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHH-HHHHhhhhhhh
Confidence 334444555554444 444 4444444444555554444442 33444444445555544444433 33333444444
Q ss_pred eecCcCc--------------------------cccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCC
Q psy3787 80 LKNNKIS--------------------------EVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKT 133 (263)
Q Consensus 80 l~~~~l~--------------------------~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~ 133 (263)
+++|.+. .+|..+-.+.+|..++++.|.+..+|..+..+.+|+.|++++|.|++
T Consensus 180 Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 180 LSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE 259 (1255)
T ss_pred cCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceee
Confidence 4443321 12333334445555566666666666666666666666666666665
Q ss_pred cchHHHHhHHHHhhhhhCCCCcccc------c--ccCCCCCCCcC-CcccccccccccCCcceeccc--cccccChhHHh
Q psy3787 134 VRNDILQDSKRIISHIKTSRLDYHC------Q--NVDGGGMSSQE-STSEINIDKYKLDRTKTLTLC--KVINIPESVYM 202 (263)
Q Consensus 134 ~~~~~~~~~~~~l~~l~~~~~~~~~------~--~~~~~~~~~~~-~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~ 202 (263)
+......- ..++.|+++++++.. . ++..-...... ....+|..|+.+.+|+.+... .+.-+|+.+..
T Consensus 260 L~~~~~~W--~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcR 337 (1255)
T KOG0444|consen 260 LNMTEGEW--ENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCR 337 (1255)
T ss_pred eeccHHHH--hhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhh
Confidence 44322111 233444444444200 0 00000000000 034566667777777777666 55666776666
Q ss_pred hcCCccceeEEEeccCCcccccCccccccccccccccccCCceEEecccccc
Q psy3787 203 RGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFALTYNYVGD 254 (263)
Q Consensus 203 ~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 254 (263)
+.+ |+. |.|++|++-++|..... +..+..+.+..||.+-++.-..|
T Consensus 338 C~k----L~k-L~L~~NrLiTLPeaIHl-L~~l~vLDlreNpnLVMPPKP~d 383 (1255)
T KOG0444|consen 338 CVK----LQK-LKLDHNRLITLPEAIHL-LPDLKVLDLRENPNLVMPPKPND 383 (1255)
T ss_pred hHH----HHH-hcccccceeechhhhhh-cCCcceeeccCCcCccCCCCcch
Confidence 665 777 77777777777764432 34455566667776655544333
No 7
>KOG0444|consensus
Probab=99.77 E-value=2.4e-20 Score=162.82 Aligned_cols=211 Identities=24% Similarity=0.379 Sum_probs=150.4
Q ss_pred CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcC-CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN 79 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 79 (263)
|+.|+.+.+.+|++....+|+ +.++..|+.||+++|+++.+|. +...+++-.|++|+|+|.++|.+.|-.+..|-.|+
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLD 156 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhc
Confidence 567788888888888777887 8889999999999999998884 77778888899999999999988888888999999
Q ss_pred eecCcCccccccccCCCCcCEEEccCCcCCCcc-ccccCCCcccEEEecCCC--CCCcchHHHHhHHHHhhhhhCCCCcc
Q psy3787 80 LKNNKISEVSSNVGDLINLAILDLSDNELTDVP-CELSSLFHLKSLFLGGNP--IKTVRNDILQDSKRIISHIKTSRLDY 156 (263)
Q Consensus 80 l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~~~~l~~l~~~~~~~ 156 (263)
+++|++..+|..+..+..|++|.+++|.+..+. ..+..+++|+.|.+++.. +..+|..+-... .+..++++.+.
T Consensus 157 LS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~--NL~dvDlS~N~- 233 (1255)
T KOG0444|consen 157 LSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLH--NLRDVDLSENN- 233 (1255)
T ss_pred cccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhh--hhhhccccccC-
Confidence 999999999988888888999999988776432 134556666777776653 333665544443 55566665555
Q ss_pred cccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccc
Q psy3787 157 HCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVIN 234 (263)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~ 234 (263)
..-.|..+..+++|+.|+++ .|+++...... +.+|++ |++|.|+++.+|. +.|++.+
T Consensus 234 ---------------Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~----W~~lEt-LNlSrNQLt~LP~-avcKL~k 292 (1255)
T KOG0444|consen 234 ---------------LPIVPECLYKLRNLRRLNLSGNKITELNMTEGE----WENLET-LNLSRNQLTVLPD-AVCKLTK 292 (1255)
T ss_pred ---------------CCcchHHHhhhhhhheeccCcCceeeeeccHHH----Hhhhhh-hccccchhccchH-HHhhhHH
Confidence 34455566666666666666 56655443332 224666 6666666666665 3344444
Q ss_pred cc
Q psy3787 235 IP 236 (263)
Q Consensus 235 l~ 236 (263)
+.
T Consensus 293 L~ 294 (1255)
T KOG0444|consen 293 LT 294 (1255)
T ss_pred HH
Confidence 43
No 8
>KOG0472|consensus
Probab=99.72 E-value=4.8e-20 Score=153.17 Aligned_cols=232 Identities=20% Similarity=0.274 Sum_probs=116.1
Q ss_pred CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN 79 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 79 (263)
+..+..+++++|++.. .|+ +..+..+..++.++|++..+| .+....++..++++.|.+.+.+++ ++.+-.++.++
T Consensus 67 L~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~-i~~~~~l~dl~ 143 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDS-IGRLLDLEDLD 143 (565)
T ss_pred ccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCch-HHHHhhhhhhh
Confidence 3445566666666655 333 555556666666666665555 344455555555555555555444 33444455555
Q ss_pred eecCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccc
Q psy3787 80 LKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQ 159 (263)
Q Consensus 80 l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 159 (263)
..+|+++++|+.+..+.++..+++.+|.++.+|+..-.++.|++++...|.++.+|++++... .+.-+++.++.+...
T Consensus 144 ~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~--~L~~LyL~~Nki~~l 221 (565)
T KOG0472|consen 144 ATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLE--SLELLYLRRNKIRFL 221 (565)
T ss_pred ccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchh--hhHHHHhhhcccccC
Confidence 555555555555545545555555555555444443334455555555555555555443332 222222222221000
Q ss_pred -ccCCCCC----C-CcCCcccccccc-cccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccc
Q psy3787 160 -NVDGGGM----S-SQESTSEINIDK-YKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLC 230 (263)
Q Consensus 160 -~~~~~~~----~-~~~~~~~~~~~~-~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~ 230 (263)
.+.+... + +.....-+|-+. +.++++..||++ +++++|+++.-... |.+ ||+|+|.|+.+|.....
T Consensus 222 Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrs----L~r-LDlSNN~is~Lp~sLgn 296 (565)
T KOG0472|consen 222 PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRS----LER-LDLSNNDISSLPYSLGN 296 (565)
T ss_pred CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhh----hhh-hcccCCccccCCccccc
Confidence 0000000 0 000022233332 356677777777 77777777665443 777 77777777777653322
Q ss_pred cccccccccccCCce
Q psy3787 231 KVINIPESVYMNRPF 245 (263)
Q Consensus 231 ~~~~l~~~~~~~~~~ 245 (263)
+ .+..+...|||.
T Consensus 297 -l-hL~~L~leGNPl 309 (565)
T KOG0472|consen 297 -L-HLKFLALEGNPL 309 (565)
T ss_pred -c-eeeehhhcCCch
Confidence 2 566667777773
No 9
>KOG0617|consensus
Probab=99.71 E-value=2.8e-19 Score=133.06 Aligned_cols=137 Identities=30% Similarity=0.449 Sum_probs=79.5
Q ss_pred CCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 3 SHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
++++.|.+++|+++. +|+ ++.+.+|+.|++++|++..+| .+..+++|++|+++.|++...+.+ |+.++.|+.|++
T Consensus 33 s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhc
Confidence 445555666666655 444 666666666666666666555 355566666666666655544333 555666666666
Q ss_pred ecCcCc--cccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhH
Q psy3787 81 KNNKIS--EVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDS 142 (263)
Q Consensus 81 ~~~~l~--~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 142 (263)
++|++. .+|..+.-+..|+.+++++|.+.-+|..++++++|+.+.+++|.+-++|.++....
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt 173 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLT 173 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHH
Confidence 666555 45555555555666666666665556566666666666666666555555544443
No 10
>KOG0617|consensus
Probab=99.71 E-value=1e-18 Score=130.04 Aligned_cols=183 Identities=22% Similarity=0.258 Sum_probs=139.6
Q ss_pred CcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcc
Q psy3787 42 LPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121 (263)
Q Consensus 42 l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L 121 (263)
++.+-.+...+.|.+++|.++.++|. +..+.+|+.|++.+|.+.++|..++.+++|++++++.|++..+|..|+.++.|
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence 34444555666677788887777766 67788888888888888888888888888888888888888888888888888
Q ss_pred cEEEecCCCCCC--cchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--cccccC
Q psy3787 122 KSLFLGGNPIKT--VRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIP 197 (263)
Q Consensus 122 ~~L~l~~n~l~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~ 197 (263)
+.+++..|.+.+ +|...+-.. .++.+.+.+++ ..-+|++++.+++|+.|.++ .+-++|
T Consensus 105 evldltynnl~e~~lpgnff~m~--tlralyl~dnd----------------fe~lp~dvg~lt~lqil~lrdndll~lp 166 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMT--TLRALYLGDND----------------FEILPPDVGKLTNLQILSLRDNDLLSLP 166 (264)
T ss_pred hhhhccccccccccCCcchhHHH--HHHHHHhcCCC----------------cccCChhhhhhcceeEEeeccCchhhCc
Confidence 888888888776 666655544 67777777777 46688899999999999999 888999
Q ss_pred hhHHhhcCCccceeEEEeccCCcccccCcccc-ccc-cccccccccCCceEEe
Q psy3787 198 ESVYMRGMSSQECTIEINIDKYKLDRTKTLTL-CKV-INIPESVYMNRPFALT 248 (263)
Q Consensus 198 ~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~-~~~-~~l~~~~~~~~~~~~~ 248 (263)
.++..+.. |+. |.+.+|+++.+|+... .++ .+-.......|||...
T Consensus 167 keig~lt~----lre-lhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~p 214 (264)
T KOG0617|consen 167 KEIGDLTR----LRE-LHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVNP 214 (264)
T ss_pred HHHHHHHH----HHH-HhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCCh
Confidence 99998876 998 9999999998887321 111 1122335566666543
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.62 E-value=1.5e-15 Score=140.49 Aligned_cols=122 Identities=25% Similarity=0.320 Sum_probs=75.1
Q ss_pred CCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec
Q psy3787 4 HLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN 82 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 82 (263)
+...|++++++++. +|. +. +.++.|++++|.++.+|.. ...+|+.|++++|.+..++.. + ...|+.|++++
T Consensus 179 ~~~~L~L~~~~Lts--LP~~Ip--~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~-l--~~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLTT--IPACIP--EQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPAT-L--PDTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcCc--CCcccc--cCCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChh-h--hccccEEECcC
Confidence 34567777766665 444 32 4577777777777766631 124677777777776665543 2 23567777777
Q ss_pred CcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchH
Q psy3787 83 NKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRND 137 (263)
Q Consensus 83 ~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~ 137 (263)
|.+..+|..+. .+|+.|++++|.++.+|..+. .+|+.|++++|.++.+|..
T Consensus 251 N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~ 301 (754)
T PRK15370 251 NRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAH 301 (754)
T ss_pred CccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCccc
Confidence 77776666543 356777777777766665443 3667777777777666543
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.59 E-value=3.9e-15 Score=137.31 Aligned_cols=120 Identities=28% Similarity=0.306 Sum_probs=60.7
Q ss_pred CCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhh-------------
Q psy3787 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFL------------- 70 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~------------- 70 (263)
+++.|++.+|+++. +|.+ .++|++|++++|+++.+|.+ .++|+.|++++|.+..++.. +.
T Consensus 223 ~L~~L~L~~N~Lt~--LP~l--p~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~l-p~~L~~L~Ls~N~Lt 295 (788)
T PRK15387 223 HITTLVIPDNNLTS--LPAL--PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPAL-PSGLCKLWIFGNQLT 295 (788)
T ss_pred CCCEEEccCCcCCC--CCCC--CCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhc-hhhcCEEECcCCccc
Confidence 46777777777776 5542 46777777777777766632 23555555555554433220 00
Q ss_pred ----CCCCccEEEeecCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcch
Q psy3787 71 ----TLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRN 136 (263)
Q Consensus 71 ----~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~ 136 (263)
..++|+.|++++|+++.+|... ..|+.|++++|.++.+|.. ..+|+.|++++|.|+++|.
T Consensus 296 ~LP~~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 296 SLPVLPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPT 359 (788)
T ss_pred cccccccccceeECCCCccccCCCCc---ccccccccccCcccccccc---ccccceEecCCCccCCCCC
Confidence 1234455555555444443311 1233333333333333321 1256666666666666653
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.59 E-value=2.2e-14 Score=132.75 Aligned_cols=185 Identities=21% Similarity=0.303 Sum_probs=146.2
Q ss_pred CCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 3 SHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
++++.|++++|+++. +|. +. ++|+.|++++|.++.+|.- -..+|+.|++++|.+..++.. + ..+|+.|+++
T Consensus 199 ~~L~~L~Ls~N~Lts--LP~~l~--~nL~~L~Ls~N~LtsLP~~-l~~~L~~L~Ls~N~L~~LP~~-l--~s~L~~L~Ls 270 (754)
T PRK15370 199 EQITTLILDNNELKS--LPENLQ--GNIKTLYANSNQLTSIPAT-LPDTIQEMELSINRITELPER-L--PSALQSLDLF 270 (754)
T ss_pred cCCcEEEecCCCCCc--CChhhc--cCCCEEECCCCccccCChh-hhccccEEECcCCccCcCChh-H--hCCCCEEECc
Confidence 468899999999997 665 32 5899999999999988841 135799999999999988765 3 2579999999
Q ss_pred cCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccccc
Q psy3787 82 NNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNV 161 (263)
Q Consensus 82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 161 (263)
+|+++.+|..+. .+|+.|++++|.++.+|..+. .+|+.|++++|.++.+|.... ..+..|+++.+.
T Consensus 271 ~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~----~sL~~L~Ls~N~------ 336 (754)
T PRK15370 271 HNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLP----PGLKTLEAGENA------ 336 (754)
T ss_pred CCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCcccc----ccceeccccCCc------
Confidence 999999988764 579999999999999886554 478999999999999886543 345667666665
Q ss_pred CCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccc
Q psy3787 162 DGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLT 228 (263)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~ 228 (263)
...+|..+. ++|+.|+++ +++.+|..+. . .|+. |++++|+|+.+|...
T Consensus 337 ----------Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~----~L~~-LdLs~N~Lt~LP~~l 386 (754)
T PRK15370 337 ----------LTSLPASLP--PELQVLDVSKNQITVLPETLP--P----TITT-LDVSRNALTNLPENL 386 (754)
T ss_pred ----------cccCChhhc--CcccEEECCCCCCCcCChhhc--C----CcCE-EECCCCcCCCCCHhH
Confidence 333454443 689999999 8888887553 2 5999 999999999998743
No 14
>KOG0618|consensus
Probab=99.59 E-value=1.1e-16 Score=145.14 Aligned_cols=214 Identities=22% Similarity=0.269 Sum_probs=136.6
Q ss_pred CCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 4 HLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
+++.+++++|++.. +|. +..+.+|+.++..+|.+..+| .+....+|+.+.+.+|.+..+++. ..+...|++|++.
T Consensus 242 nl~~~dis~n~l~~--lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~-le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSN--LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPF-LEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhhc--chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCc-ccccceeeeeeeh
Confidence 46667777777766 556 666777777777777776554 233344444455555555444432 3345555555555
Q ss_pred cCcCccccccc--------------------------cCCCCcCEEEccCCcCCC-ccccccCCCcccEEEecCCCCCCc
Q psy3787 82 NNKISEVSSNV--------------------------GDLINLAILDLSDNELTD-VPCELSSLFHLKSLFLGGNPIKTV 134 (263)
Q Consensus 82 ~~~l~~lp~~~--------------------------~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~L~l~~n~l~~~ 134 (263)
.|++..+|..+ .....|+.|++.+|.++. .-+.+....+|+.|++++|.+.++
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence 55555444321 112345666677777763 333567778888888888888888
Q ss_pred chHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeE
Q psy3787 135 RNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTI 212 (263)
Q Consensus 135 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~ 212 (263)
|...+... ..+++|.++++. ...+|.++..++.|+.|... ++..+| ++.... +|+.
T Consensus 399 pas~~~kl-e~LeeL~LSGNk----------------L~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~----qL~~ 456 (1081)
T KOG0618|consen 399 PASKLRKL-EELEELNLSGNK----------------LTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLP----QLKV 456 (1081)
T ss_pred CHHHHhch-HHhHHHhcccch----------------hhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcC----cceE
Confidence 87655553 677788888887 56777778888888888877 777777 555444 4888
Q ss_pred EEeccCCcccc--cCccccccccccccccccCCce
Q psy3787 213 EINIDKYKLDR--TKTLTLCKVINIPESVYMNRPF 245 (263)
Q Consensus 213 ~L~ls~n~l~~--ip~~~~~~~~~l~~~~~~~~~~ 245 (263)
+|+|.|.|++ +|.... -.++.++.+.||+.
T Consensus 457 -lDlS~N~L~~~~l~~~~p--~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 457 -LDLSCNNLSEVTLPEALP--SPNLKYLDLSGNTR 488 (1081)
T ss_pred -EecccchhhhhhhhhhCC--CcccceeeccCCcc
Confidence 8888888774 333222 15566777777774
No 15
>KOG4237|consensus
Probab=99.54 E-value=2.9e-16 Score=130.51 Aligned_cols=240 Identities=20% Similarity=0.316 Sum_probs=130.6
Q ss_pred CCEEEeecCccCCCCccc--cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEE-ecCCCCCCCchhhhhCCCCccEEE
Q psy3787 5 LKTLDLSHNKLVSDSLPL--FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLL-LGFNKINNMENDYFLTLTKLSLLN 79 (263)
Q Consensus 5 L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~-l~~n~~~~~~~~~~~~l~~L~~L~ 79 (263)
..+++|..|.|+. +|+ |+.+++|+.|||++|.|+.+. +|.+++.+..|- .++|+|++++.++|.++..++.|.
T Consensus 69 tveirLdqN~I~~--iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 69 TVEIRLDQNQISS--IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred ceEEEeccCCccc--CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3456666666666 444 666666666666666666543 366665555543 344666666666666666666666
Q ss_pred eecCcCcccc-ccccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCC---cc----------hHHH--HhH
Q psy3787 80 LKNNKISEVS-SNVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKT---VR----------NDIL--QDS 142 (263)
Q Consensus 80 l~~~~l~~lp-~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~---~~----------~~~~--~~~ 142 (263)
+.-|++.-++ +.+..++++..|.+-+|.+..++. .+..+.+++.+.+..|++-. ++ -+.. ...
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 6666666443 345666667777777777766655 46666666666666665210 00 0000 000
Q ss_pred -HHHhhhhhCCCCc---ccccccCCC--CCCCcCCccccc--ccccccCCcceeccc--cccccChhHHhhcC-------
Q psy3787 143 -KRIISHIKTSRLD---YHCQNVDGG--GMSSQESTSEIN--IDKYKLDRTKTLTLC--KVINIPESVYMRGM------- 205 (263)
Q Consensus 143 -~~~l~~l~~~~~~---~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~------- 205 (263)
...+.+-..+..+ +.|. .++- ..........+. ..|+.+++|+.++++ +++.+.+..|+...
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~-~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCS-LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred chHHHHHHHhcccchhhhhhh-HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 0001100000000 0000 0000 000000011111 125677777777777 66666554333222
Q ss_pred --------------CccceeEEEeccCCcccccCccccccccccccccccCCceEEe
Q psy3787 206 --------------SSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFALT 248 (263)
Q Consensus 206 --------------~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~~ 248 (263)
++..|+. |+|.+|+|+.+-+.++.....+..+.+.+||+.+.
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~t-L~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKT-LSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred CcchHHHHHHHhhhcccccee-eeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 4457888 99999999988888888788888888889987654
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.52 E-value=1.1e-13 Score=135.32 Aligned_cols=127 Identities=21% Similarity=0.195 Sum_probs=58.0
Q ss_pred CCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCC-CCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 4 HLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQ-LTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
+|+.|+++++++.. ++. +..+++|+.++++++. +..+|.+..+++|+.|++++|......|..+..+++|+.|+++
T Consensus 612 ~L~~L~L~~s~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 612 NLVKLQMQGSKLEK--LWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CCcEEECcCccccc--cccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 34444444444433 333 4444455555554432 3344444444555555555443222222334455555555555
Q ss_pred cC-cCccccccccCCCCcCEEEccCCc-CCCccccccCCCcccEEEecCCCCCCcch
Q psy3787 82 NN-KISEVSSNVGDLINLAILDLSDNE-LTDVPCELSSLFHLKSLFLGGNPIKTVRN 136 (263)
Q Consensus 82 ~~-~l~~lp~~~~~l~~L~~L~l~~n~-l~~l~~~~~~l~~L~~L~l~~n~l~~~~~ 136 (263)
+| .++.+|..+ ++++|+.|++++|. +..+|.. ..+|+.|++++|.++.+|.
T Consensus 690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~ 742 (1153)
T PLN03210 690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPS 742 (1153)
T ss_pred CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccc
Confidence 53 344444433 34455555555442 2233321 2345566666666665554
No 17
>KOG0618|consensus
Probab=99.52 E-value=3.6e-15 Score=135.45 Aligned_cols=215 Identities=20% Similarity=0.205 Sum_probs=149.0
Q ss_pred CCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCC
Q psy3787 27 RSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDN 106 (263)
Q Consensus 27 ~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n 106 (263)
++++.|+.++|.+.....-....++++++++++++..++ +++..+.+++.++..+|.++.+|..+....+|+.+.+..|
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n 297 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN 297 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh
Confidence 345555555555553222223468889999999999988 8889999999999999999999999888999999999999
Q ss_pred cCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCC---------CCCcCCcccccc
Q psy3787 107 ELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGG---------MSSQESTSEINI 177 (263)
Q Consensus 107 ~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 177 (263)
.+..+|....+.++|++|++..|.|..+|...+......+..+..+.+.+......+.. .+.........+
T Consensus 298 el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p 377 (1081)
T KOG0618|consen 298 ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP 377 (1081)
T ss_pred hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh
Confidence 99999988899999999999999999999866665545555555544443111100000 000111344455
Q ss_pred cccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCCceEE
Q psy3787 178 DKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFAL 247 (263)
Q Consensus 178 ~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~ 247 (263)
.+.++++|+.|+++ .++.+|+..+... ..|+. |+||||+++.+|.. -.....+..+...+|....
T Consensus 378 ~l~~~~hLKVLhLsyNrL~~fpas~~~kl---e~Lee-L~LSGNkL~~Lp~t-va~~~~L~tL~ahsN~l~~ 444 (1081)
T KOG0618|consen 378 VLVNFKHLKVLHLSYNRLNSFPASKLRKL---EELEE-LNLSGNKLTTLPDT-VANLGRLHTLRAHSNQLLS 444 (1081)
T ss_pred hhccccceeeeeecccccccCCHHHHhch---HHhHH-HhcccchhhhhhHH-HHhhhhhHHHhhcCCceee
Confidence 56777888888888 7788887655443 37887 88888888888742 2223445555555555443
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.50 E-value=9e-14 Score=128.38 Aligned_cols=193 Identities=23% Similarity=0.238 Sum_probs=101.9
Q ss_pred CCCCCEEEeecCccCCCCcccc-CC-----------------CCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCC
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLF-ID-----------------MRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINN 63 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~-~~-----------------l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~ 63 (263)
+++|++|++++|+++. +|.+ .+ ...|+.|++++|.++.+|. ..++|+.|++++|.+..
T Consensus 241 p~~Lk~LdLs~N~Lts--LP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 241 PPELRTLEVSGNQLTS--LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLAS 316 (788)
T ss_pred CCCCcEEEecCCccCc--ccCcccccceeeccCCchhhhhhchhhcCEEECcCCccccccc--cccccceeECCCCcccc
Confidence 4678888888888877 4431 10 1245556666666666654 23678888999988887
Q ss_pred CchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHH
Q psy3787 64 MENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSK 143 (263)
Q Consensus 64 ~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 143 (263)
++.. ...|..|++++|.++.+|.. ..+|++|++++|.++.+|... .+|+.|++++|.+..+|...
T Consensus 317 Lp~l----p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~lp---~~L~~L~Ls~N~L~~LP~l~----- 381 (788)
T PRK15387 317 LPAL----PSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLTSLPALP----- 381 (788)
T ss_pred CCCC----cccccccccccCcccccccc---ccccceEecCCCccCCCCCCC---cccceehhhccccccCcccc-----
Confidence 6531 23466666777777666642 235666777777666665322 24444555555555544321
Q ss_pred HHhhhhhCCCCcccccc-----cCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEec
Q psy3787 144 RIISHIKTSRLDYHCQN-----VDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINI 216 (263)
Q Consensus 144 ~~l~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~l 216 (263)
..|..|+++.+.+...- +..-.++.. ....+|.. ...|+.|+++ +++.+|..+..+.. |+. |++
T Consensus 382 ~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~----L~~-LdL 452 (788)
T PRK15387 382 SGLKELIVSGNRLTSLPVLPSELKELMVSGN-RLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSS----ETT-VNL 452 (788)
T ss_pred cccceEEecCCcccCCCCcccCCCEEEccCC-cCCCCCcc---hhhhhhhhhccCcccccChHHhhccC----CCe-EEC
Confidence 12333333333320000 000000000 01222221 2355666666 66667766555443 776 777
Q ss_pred cCCccc
Q psy3787 217 DKYKLD 222 (263)
Q Consensus 217 s~n~l~ 222 (263)
++|+++
T Consensus 453 s~N~Ls 458 (788)
T PRK15387 453 EGNPLS 458 (788)
T ss_pred CCCCCC
Confidence 777766
No 19
>KOG4237|consensus
Probab=99.46 E-value=5e-15 Score=123.27 Aligned_cols=208 Identities=20% Similarity=0.206 Sum_probs=138.9
Q ss_pred CCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec-CcCcccccc-ccCCCCcCEEEc
Q psy3787 28 SLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN-NKISEVSSN-VGDLINLAILDL 103 (263)
Q Consensus 28 ~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-~~l~~lp~~-~~~l~~L~~L~l 103 (263)
....++|..|+|+.+| +|+.+++|+.||+++|.|+.+.+.+|+++..+..|.+.+ |+|+.+|.. +..+..++-|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 5677899999999888 488999999999999999999999999999887777766 899988875 678888888888
Q ss_pred cCCcCCCc-cccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCccccccccccc
Q psy3787 104 SDNELTDV-PCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKL 182 (263)
Q Consensus 104 ~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (263)
.-|.+.-+ ...+..++++..|.+-+|.+..+....+... ..++.+.+..+++.|.....+-.+- ....+..+++.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l-~~i~tlhlA~np~icdCnL~wla~~---~a~~~ietsga 223 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGL-AAIKTLHLAQNPFICDCNLPWLADD---LAMNPIETSGA 223 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccch-hccchHhhhcCccccccccchhhhH---Hhhchhhcccc
Confidence 88888855 4458888999999998988888776555443 3445555555555444221111000 01111111111
Q ss_pred C----------------------Cccee---ccc--cc-cccChhHHhhcCCccceeEEEeccCCcccccCccccccccc
Q psy3787 183 D----------------------RTKTL---TLC--KV-INIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVIN 234 (263)
Q Consensus 183 ~----------------------~L~~L---~l~--~~-~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~ 234 (263)
. .++.+ ..+ .+ ...|..-| .++++|++ |++++|+|++|...++.+.-.
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf---~~L~~L~~-lnlsnN~i~~i~~~aFe~~a~ 299 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCF---KKLPNLRK-LNLSNNKITRIEDGAFEGAAE 299 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHH---hhcccceE-eccCCCccchhhhhhhcchhh
Confidence 1 12222 111 22 23343333 34568999 999999999999887776555
Q ss_pred cccccccCC
Q psy3787 235 IPESVYMNR 243 (263)
Q Consensus 235 l~~~~~~~~ 243 (263)
+.++.+.+|
T Consensus 300 l~eL~L~~N 308 (498)
T KOG4237|consen 300 LQELYLTRN 308 (498)
T ss_pred hhhhhcCcc
Confidence 555544444
No 20
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.43 E-value=1.7e-12 Score=126.91 Aligned_cols=121 Identities=25% Similarity=0.285 Sum_probs=73.6
Q ss_pred CCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc-CCCCCCCCcEEEecCCC-CCCCchhhhhCCCCccEEEeec
Q psy3787 5 LKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNK-INNMENDYFLTLTKLSLLNLKN 82 (263)
Q Consensus 5 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~ 82 (263)
|+.|++.++.+.. +|......+|+.|+++++.+..++ .+..+++|+.++++++. +..++ . ++.+++|+.|++.+
T Consensus 591 Lr~L~~~~~~l~~--lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~-ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 591 LRLLRWDKYPLRC--MPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-D-LSMATNLETLKLSD 666 (1153)
T ss_pred cEEEEecCCCCCC--CCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-c-cccCCcccEEEecC
Confidence 4555555555444 444224566666777666666554 35566677777776654 33333 2 55666777777776
Q ss_pred C-cCccccccccCCCCcCEEEccCC-cCCCccccccCCCcccEEEecCCC
Q psy3787 83 N-KISEVSSNVGDLINLAILDLSDN-ELTDVPCELSSLFHLKSLFLGGNP 130 (263)
Q Consensus 83 ~-~l~~lp~~~~~l~~L~~L~l~~n-~l~~l~~~~~~l~~L~~L~l~~n~ 130 (263)
| .+..+|..+..+.+|+.|++++| .+..+|..+ .+++|+.|++++|.
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS 715 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence 5 45566777777777777777765 455666444 56677777777763
No 21
>KOG0532|consensus
Probab=99.34 E-value=5.6e-14 Score=121.91 Aligned_cols=167 Identities=20% Similarity=0.274 Sum_probs=115.9
Q ss_pred EEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCC
Q psy3787 53 HLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIK 132 (263)
Q Consensus 53 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~ 132 (263)
..|+++|++.+++.. ++.+-.|+.+.+..|.++.+|..+.++..|..++++.|.++.+|..+..+ -|+.+.++.|+++
T Consensus 79 ~aDlsrNR~~elp~~-~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~ 156 (722)
T KOG0532|consen 79 FADLSRNRFSELPEE-ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLT 156 (722)
T ss_pred hhhccccccccCchH-HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCccc
Confidence 456777777766654 45566677777777777777777777777777777777777777665555 4677777777777
Q ss_pred CcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccce
Q psy3787 133 TVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQEC 210 (263)
Q Consensus 133 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L 210 (263)
.+|.++. ....+.+++.+.+. ...+|..++++.+|+.|.++ ++..+|+++. ... |
T Consensus 157 ~lp~~ig--~~~tl~~ld~s~ne----------------i~slpsql~~l~slr~l~vrRn~l~~lp~El~-~Lp----L 213 (722)
T KOG0532|consen 157 SLPEEIG--LLPTLAHLDVSKNE----------------IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLP----L 213 (722)
T ss_pred cCCcccc--cchhHHHhhhhhhh----------------hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCc----e
Confidence 7777766 23456666666666 45666677777777777777 7777777777 443 7
Q ss_pred eEEEeccCCcccccCccccccccccccccccCCceE
Q psy3787 211 TIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFA 246 (263)
Q Consensus 211 ~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~ 246 (263)
.. ||+|+|++..||. .++.+..+..+.+..||..
T Consensus 214 i~-lDfScNkis~iPv-~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 214 IR-LDFSCNKISYLPV-DFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ee-eecccCceeecch-hhhhhhhheeeeeccCCCC
Confidence 77 8888888887776 4556667777777777743
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.34 E-value=8.7e-13 Score=101.15 Aligned_cols=130 Identities=32% Similarity=0.381 Sum_probs=45.9
Q ss_pred ccccCCCCCCcEEEecCCCCCCCcCCC-CCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccc-cCCCC
Q psy3787 20 LPLFIDMRSLTELNLSYNQLTMLPVCT-DCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLIN 97 (263)
Q Consensus 20 ~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~ 97 (263)
.+.+.+..+++.|++++|.|+.+..+. .+.+|+.|++++|.+..+.. +..+++|++|++++|+++.++..+ ..+++
T Consensus 12 ~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 12 IAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPN 89 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT
T ss_pred ccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCc
Confidence 444666667888888888888777665 46788888888888887754 667888888888888888776544 35778
Q ss_pred cCEEEccCCcCCCcc--ccccCCCcccEEEecCCCCCCcchHHHHhH--HHHhhhhhC
Q psy3787 98 LAILDLSDNELTDVP--CELSSLFHLKSLFLGGNPIKTVRNDILQDS--KRIISHIKT 151 (263)
Q Consensus 98 L~~L~l~~n~l~~l~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--~~~l~~l~~ 151 (263)
|++|++++|.|..+. ..++.+++|+.|++.+|++...+....... .+.+..||.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 888888888887653 246778888888888888876543322221 344455544
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.33 E-value=1.1e-12 Score=100.59 Aligned_cols=122 Identities=29% Similarity=0.323 Sum_probs=53.9
Q ss_pred CCCCEEEeecCccCCCCccccC-CCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 3 SHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
..+++|++++|.+.. +..+. .+.+|+.|++++|.++.++.+..++.|+.|++++|.++++.......+++|++|+++
T Consensus 19 ~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 19 VKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred ccccccccccccccc--ccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 357889999999887 66665 578999999999999999988889999999999999998865433468999999999
Q ss_pred cCcCccccc--cccCCCCcCEEEccCCcCCCcc----ccccCCCcccEEEe
Q psy3787 82 NNKISEVSS--NVGDLINLAILDLSDNELTDVP----CELSSLFHLKSLFL 126 (263)
Q Consensus 82 ~~~l~~lp~--~~~~l~~L~~L~l~~n~l~~l~----~~~~~l~~L~~L~l 126 (263)
+|++..+.+ .+..+++|+.|++.+|++..-+ ..+..+|+|+.||-
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 999986643 4678899999999999988543 23678888998864
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.31 E-value=4.6e-13 Score=113.50 Aligned_cols=208 Identities=21% Similarity=0.194 Sum_probs=109.9
Q ss_pred CCCCEEEeecCccCCCC---ccc-cCCCCCCcEEEecCCCCCCCc--------CCCCCCCCcEEEecCCCCCCCchhhhh
Q psy3787 3 SHLKTLDLSHNKLVSDS---LPL-FIDMRSLTELNLSYNQLTMLP--------VCTDCKNLTHLLLGFNKINNMENDYFL 70 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~---~~~-~~~l~~L~~L~l~~n~l~~l~--------~~~~~~~L~~L~l~~n~~~~~~~~~~~ 70 (263)
.+|++++++++.++... ++. +...+.++.++++++.+...+ .+..+++|+.|++++|.+....+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 45677777777764421 222 555666777777777665211 244566777777777776644444444
Q ss_pred CCCC---ccEEEeecCcCcc-----ccccccCC-CCcCEEEccCCcCCC-----ccccccCCCcccEEEecCCCCCCcch
Q psy3787 71 TLTK---LSLLNLKNNKISE-----VSSNVGDL-INLAILDLSDNELTD-----VPCELSSLFHLKSLFLGGNPIKTVRN 136 (263)
Q Consensus 71 ~l~~---L~~L~l~~~~l~~-----lp~~~~~l-~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~ 136 (263)
.+.+ |++|++++|+++. +...+..+ .+|+.+++++|.++. ++..+..+..|+.+++++|.++.-..
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 4444 7777777776651 22334444 677777777777662 33345566677777777776664211
Q ss_pred HH-HHhH--HHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--ccccc-ChhHHhhc-CCccc
Q psy3787 137 DI-LQDS--KRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINI-PESVYMRG-MSSQE 209 (263)
Q Consensus 137 ~~-~~~~--~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l-~~~~~~~~-~~~~~ 209 (263)
.. .... ...++.++++.+.+ .+.+ ...+...+..+++|++|+++ .++.. ...+.... ...+.
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i-----~~~~------~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~ 251 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGL-----TDEG------ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNIS 251 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCcc-----ChHH------HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCC
Confidence 11 1111 12445555544432 0000 12223334556677777777 44321 11111111 01235
Q ss_pred eeEEEeccCCccc
Q psy3787 210 CTIEINIDKYKLD 222 (263)
Q Consensus 210 L~~~L~ls~n~l~ 222 (263)
|+. |++++|.++
T Consensus 252 L~~-L~l~~n~i~ 263 (319)
T cd00116 252 LLT-LSLSCNDIT 263 (319)
T ss_pred ceE-EEccCCCCC
Confidence 776 777777664
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.30 E-value=1.2e-12 Score=110.90 Aligned_cols=211 Identities=19% Similarity=0.168 Sum_probs=126.3
Q ss_pred CCCCEEEeecCccCC--CC---ccc-cCCCCCCcEEEecCCCCCCC-c-CCCCC---CCCcEEEecCCCCCCCc----hh
Q psy3787 3 SHLKTLDLSHNKLVS--DS---LPL-FIDMRSLTELNLSYNQLTML-P-VCTDC---KNLTHLLLGFNKINNME----ND 67 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~--~~---~~~-~~~l~~L~~L~l~~n~l~~l-~-~~~~~---~~L~~L~l~~n~~~~~~----~~ 67 (263)
++++.++++++.+.. .. ++. +..+++|+.|++++|.+... + .+..+ ++|++|++++|++.... ..
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 457888888877652 11 112 66788889999988888632 1 22222 45888888888876321 22
Q ss_pred hhhCC-CCccEEEeecCcCc-----cccccccCCCCcCEEEccCCcCCC-----ccccccCCCcccEEEecCCCCCCcch
Q psy3787 68 YFLTL-TKLSLLNLKNNKIS-----EVSSNVGDLINLAILDLSDNELTD-----VPCELSSLFHLKSLFLGGNPIKTVRN 136 (263)
Q Consensus 68 ~~~~l-~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~ 136 (263)
.+..+ ++|+.+++++|.++ .++..+..+..|+++++++|.++. ++..+..+++|+.|++++|.+.....
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 34555 78888999888877 334455667788888888888772 33345666788888888888776443
Q ss_pred HHHHhH---HHHhhhhhCCCCcccccccCCCCCCCcCCcccccccc-cccCCcceeccc--ccccc-ChhHHhhcCCccc
Q psy3787 137 DILQDS---KRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDK-YKLDRTKTLTLC--KVINI-PESVYMRGMSSQE 209 (263)
Q Consensus 137 ~~~~~~---~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~--~~~~l-~~~~~~~~~~~~~ 209 (263)
..+... .+.+++++++++.+. +.+ ...+...+ ...+.|++|+++ .++.. ...+......+++
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n~l~-----~~~------~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~ 279 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDNNLT-----DAG------AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKES 279 (319)
T ss_pred HHHHHHhcccCCCCEEecCCCcCc-----hHH------HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCC
Confidence 322221 334666666655520 000 00111111 124788888888 55411 1122222222346
Q ss_pred eeEEEeccCCcccccC
Q psy3787 210 CTIEINIDKYKLDRTK 225 (263)
Q Consensus 210 L~~~L~ls~n~l~~ip 225 (263)
|+. +++++|.++.-+
T Consensus 280 L~~-l~l~~N~l~~~~ 294 (319)
T cd00116 280 LLE-LDLRGNKFGEEG 294 (319)
T ss_pred ccE-EECCCCCCcHHH
Confidence 888 999988887443
No 26
>KOG0532|consensus
Probab=99.24 E-value=7.8e-13 Score=114.96 Aligned_cols=173 Identities=26% Similarity=0.360 Sum_probs=113.8
Q ss_pred CEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecC
Q psy3787 6 KTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNN 83 (263)
Q Consensus 6 ~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 83 (263)
...+++.|++.. +|. ++.+-.|+.+.+..|.+..+| .+..+..|++++++.|++...+.. ++.++ |+.+.+++|
T Consensus 78 ~~aDlsrNR~~e--lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFSE--LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG-LCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhcccccccc--CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh-hhcCc-ceeEEEecC
Confidence 445677777666 555 666666777777777777666 366677777777777777776655 34444 777777777
Q ss_pred cCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCC
Q psy3787 84 KISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDG 163 (263)
Q Consensus 84 ~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 163 (263)
+++.+|..++....|.+++.+.|.+.++|..++.+.+|+.+.++.|++..+|++..... |..||.+.+.
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp---Li~lDfScNk-------- 222 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP---LIRLDFSCNK-------- 222 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc---eeeeecccCc--------
Confidence 77777777777777777777777777777777777777777777777777777655332 3344444444
Q ss_pred CCCCCcCCcccccccccccCCcceeccc--cccccChhHH
Q psy3787 164 GGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVY 201 (263)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~ 201 (263)
...+|-.|..|+.|++|-|. .+..=|..+.
T Consensus 223 --------is~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC 254 (722)
T KOG0532|consen 223 --------ISYLPVDFRKMRHLQVLQLENNPLQSPPAQIC 254 (722)
T ss_pred --------eeecchhhhhhhhheeeeeccCCCCCChHHHH
Confidence 34555566666666666666 4444444443
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.22 E-value=1.1e-11 Score=108.22 Aligned_cols=193 Identities=26% Similarity=0.341 Sum_probs=114.3
Q ss_pred EEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCC--CCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcC
Q psy3787 8 LDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCK--NLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKI 85 (263)
Q Consensus 8 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l 85 (263)
+++..+.+.. ....+..++.++.+++.+|.++.++...... +|+.|++++|.+..++.. +..+++|+.|+++.|++
T Consensus 98 l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 98 LDLNLNRLRS-NISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eecccccccc-CchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCchh
Confidence 4555555422 1333555566777777777777666533332 677777777777665422 55667777777777777
Q ss_pred ccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCC
Q psy3787 86 SEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGG 165 (263)
Q Consensus 86 ~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 165 (263)
+.+|...+....|+.+++++|.+..+|...+....|+.+.++.|++...+..+.... .+..+.+..+.
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~--~l~~l~l~~n~---------- 243 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLK--NLSGLELSNNK---------- 243 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcc--cccccccCCce----------
Confidence 777666556666777777777777776555555567777777775444333322222 22222222222
Q ss_pred CCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCc
Q psy3787 166 MSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKT 226 (263)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~ 226 (263)
....+..+..++.++.|+++ .+..++. +.... .++. +++++|.+..+++
T Consensus 244 ------~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~----~l~~-L~~s~n~~~~~~~ 294 (394)
T COG4886 244 ------LEDLPESIGNLSNLETLDLSNNQISSISS-LGSLT----NLRE-LDLSGNSLSNALP 294 (394)
T ss_pred ------eeeccchhccccccceecccccccccccc-ccccC----ccCE-EeccCccccccch
Confidence 22224456777778888888 6677765 33333 4887 8888887764433
No 28
>KOG1259|consensus
Probab=99.15 E-value=4.1e-12 Score=102.93 Aligned_cols=131 Identities=28% Similarity=0.340 Sum_probs=105.3
Q ss_pred CCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec
Q psy3787 4 HLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN 82 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 82 (263)
.|+++|+++|.++. +.. +.-.|.++.|++++|.+..+..+..+++|+.||+++|.+.++.. +--.+.++++|.+++
T Consensus 285 ~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 285 ELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhccccccchhh--hhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhh-hHhhhcCEeeeehhh
Confidence 47788999998877 555 66778999999999998888888888899999999998876543 234577889999999
Q ss_pred CcCccccccccCCCCcCEEEccCCcCCCcc--ccccCCCcccEEEecCCCCCCcchHH
Q psy3787 83 NKISEVSSNVGDLINLAILDLSDNELTDVP--CELSSLFHLKSLFLGGNPIKTVRNDI 138 (263)
Q Consensus 83 ~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~--~~~~~l~~L~~L~l~~n~l~~~~~~~ 138 (263)
|.+..+.. ++.+.+|..||+++|+|..+. ..+++++.|+++.+.+|++..++...
T Consensus 362 N~iE~LSG-L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYR 418 (490)
T KOG1259|consen 362 NKIETLSG-LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYR 418 (490)
T ss_pred hhHhhhhh-hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHH
Confidence 98887754 567788899999999988663 34889999999999999998877543
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.13 E-value=7.4e-11 Score=103.13 Aligned_cols=190 Identities=27% Similarity=0.327 Sum_probs=148.3
Q ss_pred EEEecCCCC-CCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCC-CccEEEeecCcCccccccccCCCCcCEEEccCCcC
Q psy3787 31 ELNLSYNQL-TMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLT-KLSLLNLKNNKISEVSSNVGDLINLAILDLSDNEL 108 (263)
Q Consensus 31 ~L~l~~n~l-~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l 108 (263)
.++...+.+ .....+.....++.+++.++.+..+++. ..... +|+.+++++|.++.+|..+..++.|+.|+++.|.+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhhhhhhccccccccccCCchh
Confidence 577777777 3344455567899999999999988774 33443 89999999999999998889999999999999999
Q ss_pred CCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCccee
Q psy3787 109 TDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTL 188 (263)
Q Consensus 109 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 188 (263)
..+|...+..+.|+.+++++|.+..+|..+... ..+..+.++.+. ....+..+..++.+..+
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~--~~L~~l~~~~N~----------------~~~~~~~~~~~~~l~~l 237 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELL--SALEELDLSNNS----------------IIELLSSLSNLKNLSGL 237 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCccccCchhhhhh--hhhhhhhhcCCc----------------ceecchhhhhccccccc
Confidence 999877778999999999999999999875222 245666666664 33455567888888888
Q ss_pred ccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCCceE
Q psy3787 189 TLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFA 246 (263)
Q Consensus 189 ~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~ 246 (263)
++. .+..++..+..... ++. |++++|.++.++. .....++..+.+.+|...
T Consensus 238 ~l~~n~~~~~~~~~~~l~~----l~~-L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 238 ELSNNKLEDLPESIGNLSN----LET-LDLSNNQISSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccCCceeeeccchhccccc----cce-ecccccccccccc--ccccCccCEEeccCcccc
Confidence 877 66666666665554 999 9999999999987 334577778888887643
No 30
>KOG1259|consensus
Probab=98.89 E-value=2.1e-10 Score=93.13 Aligned_cols=105 Identities=31% Similarity=0.429 Sum_probs=55.6
Q ss_pred CCCcEEEecCCCCCCCcC-CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccC
Q psy3787 27 RSLTELNLSYNQLTMLPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSD 105 (263)
Q Consensus 27 ~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~ 105 (263)
..|+.+|+++|.|+.+.. ..-.+.++.|++++|.+..+.. ++.+.+|..|++++|.++++..+-..+.+.+.|.++.
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 345555555555554442 3334555555555555555443 4445555555555555555555444455555555555
Q ss_pred CcCCCccccccCCCcccEEEecCCCCCCc
Q psy3787 106 NELTDVPCELSSLFHLKSLFLGGNPIKTV 134 (263)
Q Consensus 106 n~l~~l~~~~~~l~~L~~L~l~~n~l~~~ 134 (263)
|.+.++. .++.+++|..|++++|+|..+
T Consensus 362 N~iE~LS-GL~KLYSLvnLDl~~N~Ie~l 389 (490)
T KOG1259|consen 362 NKIETLS-GLRKLYSLVNLDLSSNQIEEL 389 (490)
T ss_pred hhHhhhh-hhHhhhhheeccccccchhhH
Confidence 5555443 345555555555555555443
No 31
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=2.2e-09 Score=67.95 Aligned_cols=57 Identities=37% Similarity=0.526 Sum_probs=24.8
Q ss_pred CCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCc
Q psy3787 28 SLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK 84 (263)
Q Consensus 28 ~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 84 (263)
+|++|++++|.++.+| .|..+++|++|++++|.+..+++.+|.++++|+++++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3444444444444333 23444444444444444444444444444444444444443
No 32
>KOG0531|consensus
Probab=98.83 E-value=8e-10 Score=97.22 Aligned_cols=193 Identities=28% Similarity=0.366 Sum_probs=132.4
Q ss_pred CCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcC-CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 3 SHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
..+..+++..|.+.. .-. +..+.+|..+++..|.|..+.. +..+++|++|++++|.|+.+.+ +..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhh--hhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhhee
Confidence 345556677777665 333 7888999999999999998888 8889999999999999998876 667888999999
Q ss_pred ecCcCccccccccCCCCcCEEEccCCcCCCcccc-ccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccc
Q psy3787 81 KNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQ 159 (263)
Q Consensus 81 ~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 159 (263)
.+|.++.+... ..+..|+.+++++|.+..+... ...+..++.+.+.+|.+..+........ +..+++..+.+.
T Consensus 148 ~~N~i~~~~~~-~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~---l~~~~l~~n~i~-- 221 (414)
T KOG0531|consen 148 SGNLISDISGL-ESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKK---LVLLSLLDNKIS-- 221 (414)
T ss_pred ccCcchhccCC-ccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHH---HHHhhcccccce--
Confidence 99999988664 3488899999999999877643 5778889999999998887654322222 111222222210
Q ss_pred ccCCCCCCCcCCcccccccccccC--Ccceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccC
Q psy3787 160 NVDGGGMSSQESTSEINIDKYKLD--RTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTK 225 (263)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip 225 (263)
....+..+. .|+.+++. .+..++..+.... .+.. ++++.|++..+.
T Consensus 222 ---------------~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~----~l~~-l~~~~n~~~~~~ 271 (414)
T KOG0531|consen 222 ---------------KLEGLNELVMLHLRELYLSGNRISRSPEGLENLK----NLPV-LDLSSNRISNLE 271 (414)
T ss_pred ---------------eccCcccchhHHHHHHhcccCccccccccccccc----cccc-cchhhccccccc
Confidence 000111122 37777777 5555543333333 4777 888877766433
No 33
>KOG3207|consensus
Probab=98.80 E-value=2e-09 Score=91.30 Aligned_cols=206 Identities=19% Similarity=0.178 Sum_probs=126.7
Q ss_pred cCCCCCCcEEEecCCCCCCCc---CCCCCCCCcEEEecCCCCCCC--chhhhhCCCCccEEEeecCcCcccccc--ccCC
Q psy3787 23 FIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLLLGFNKINNM--ENDYFLTLTKLSLLNLKNNKISEVSSN--VGDL 95 (263)
Q Consensus 23 ~~~l~~L~~L~l~~n~l~~l~---~~~~~~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~~~l~~lp~~--~~~l 95 (263)
=+++.+|+.+.++++.+...+ ....+++++.||+++|-+... .......+++|+.|+++.|++...-++ -..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 446778888888888887655 356678888888888866532 223356788888889988888744322 2356
Q ss_pred CCcCEEEccCCcCC--CccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcc
Q psy3787 96 INLAILDLSDNELT--DVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTS 173 (263)
Q Consensus 96 ~~L~~L~l~~n~l~--~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 173 (263)
..++.|.++.|.++ .+......+++|+.|++.+|..-.+- .........+..|+++++.+ + ..
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~-~~~~~i~~~L~~LdLs~N~l----i----------~~ 261 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK-ATSTKILQTLQELDLSNNNL----I----------DF 261 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee-cchhhhhhHHhhccccCCcc----c----------cc
Confidence 77888888888887 34444667888888888888411111 00111145667777777663 0 01
Q ss_pred cccccccccCCcceeccc--ccccc--Ch-hHHhhcCCccceeEEEeccCCcccccCccccc-cccccccccccCCc
Q psy3787 174 EINIDKYKLDRTKTLTLC--KVINI--PE-SVYMRGMSSQECTIEINIDKYKLDRTKTLTLC-KVINIPESVYMNRP 244 (263)
Q Consensus 174 ~~~~~~~~~~~L~~L~l~--~~~~l--~~-~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~-~~~~l~~~~~~~~~ 244 (263)
.....+..++.|+.|.++ .+.++ |+ +...-.....+|+. |+++.|+|...+..... ...++..+.+.+|+
T Consensus 262 ~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~-L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 262 DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEY-LNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred ccccccccccchhhhhccccCcchhcCCCccchhhhccccccee-eecccCccccccccchhhccchhhhhhccccc
Confidence 111335667788888887 55433 22 12222222346888 99999988766653322 23344455555554
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.80 E-value=6.4e-09 Score=65.79 Aligned_cols=58 Identities=38% Similarity=0.554 Sum_probs=30.0
Q ss_pred CCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccc-cccCCCCcCEEEccCCc
Q psy3787 50 NLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSS-NVGDLINLAILDLSDNE 107 (263)
Q Consensus 50 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~n~ 107 (263)
+|++|++++|.+..+++.+|.++++|+++++++|+++.++. .+..+++|+++++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555555555555555555555555555554432 34455555555555543
No 35
>KOG1909|consensus
Probab=98.77 E-value=3.9e-09 Score=87.23 Aligned_cols=116 Identities=19% Similarity=0.220 Sum_probs=67.7
Q ss_pred cCCCCCCcEEEecCCCCC--CCcC----CCCCCCCcEEEecCCCCCCCchhhh-------------hCCCCccEEEeecC
Q psy3787 23 FIDMRSLTELNLSYNQLT--MLPV----CTDCKNLTHLLLGFNKINNMENDYF-------------LTLTKLSLLNLKNN 83 (263)
Q Consensus 23 ~~~l~~L~~L~l~~n~l~--~l~~----~~~~~~L~~L~l~~n~~~~~~~~~~-------------~~l~~L~~L~l~~~ 83 (263)
+.++++|++++||.|-+. .++. +.++..|++|.+.+|.+.......+ ..-++|+.+...+|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 445667777777777665 2331 3456677777777776653322221 22346777777777
Q ss_pred cCcc-----ccccccCCCCcCEEEccCCcCCC-----ccccccCCCcccEEEecCCCCCCcchHH
Q psy3787 84 KISE-----VSSNVGDLINLAILDLSDNELTD-----VPCELSSLFHLKSLFLGGNPIKTVRNDI 138 (263)
Q Consensus 84 ~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~ 138 (263)
++.. +...+...+.|+.+.+..|.|.. +...+..+++|+.|++++|.++.-....
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~ 232 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA 232 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence 6652 23345555667777777776652 1234667777777777777666544333
No 36
>KOG3207|consensus
Probab=98.74 E-value=1.2e-09 Score=92.64 Aligned_cols=209 Identities=16% Similarity=0.139 Sum_probs=130.0
Q ss_pred CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcC----CCCCCCCcEEEecCCCCCCCchhh-hhCCCCc
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPV----CTDCKNLTHLLLGFNKINNMENDY-FLTLTKL 75 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~----~~~~~~L~~L~l~~n~~~~~~~~~-~~~l~~L 75 (263)
++.|+.+.+.+..+....... ...+++++.||++.|-+..+.. ...+++|+.|+++.|.+.....+. -..++++
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 456778888887766522212 6778999999999998774431 356789999999999876433221 1246788
Q ss_pred cEEEeecCcCc--cccccccCCCCcCEEEccCCc-CCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCC
Q psy3787 76 SLLNLKNNKIS--EVSSNVGDLINLAILDLSDNE-LTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTS 152 (263)
Q Consensus 76 ~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~n~-l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~ 152 (263)
+.|.++.|+++ .+..-...+++++.|++..|. +........-+..|+.|++++|.+-..+........+.+..+.++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 99999999888 333334567888999998884 332222345566788999999988777644433334455555554
Q ss_pred CCcccccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCccc
Q psy3787 153 RLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLD 222 (263)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~ 222 (263)
...+..-..- ..++-.....+++|++|+++ ++...+. +..... +.+|+. +.+..|++.
T Consensus 280 ~tgi~si~~~---------d~~s~~kt~~f~kL~~L~i~~N~I~~w~s-l~~l~~-l~nlk~-l~~~~n~ln 339 (505)
T KOG3207|consen 280 STGIASIAEP---------DVESLDKTHTFPKLEYLNISENNIRDWRS-LNHLRT-LENLKH-LRITLNYLN 339 (505)
T ss_pred ccCcchhcCC---------CccchhhhcccccceeeecccCccccccc-cchhhc-cchhhh-hhccccccc
Confidence 4332100000 01111113456899999999 6644442 112221 345787 777777765
No 37
>KOG0531|consensus
Probab=98.69 E-value=3.5e-09 Score=93.13 Aligned_cols=128 Identities=31% Similarity=0.433 Sum_probs=103.5
Q ss_pred CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
+++++.+++.+|.+.. +.. +..+++|++|++++|.|+.+..+..+..|+.|++++|.+..+.. +..+..++.+++
T Consensus 94 ~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l 169 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG--LESLKSLKLLDL 169 (414)
T ss_pred ccceeeeeccccchhh--cccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC--CccchhhhcccC
Confidence 5678899999999988 777 88899999999999999999888888889999999999988755 556889999999
Q ss_pred ecCcCcccccc-ccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCc
Q psy3787 81 KNNKISEVSSN-VGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTV 134 (263)
Q Consensus 81 ~~~~l~~lp~~-~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~ 134 (263)
++|.++.+... ...+..++.+.+.+|.+..+. .+..+..+..+++..|.++.+
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKL 223 (414)
T ss_pred CcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceec
Confidence 99999987663 467788888999999887553 233444455557777776664
No 38
>KOG4579|consensus
Probab=98.66 E-value=2.1e-09 Score=77.68 Aligned_cols=125 Identities=24% Similarity=0.306 Sum_probs=103.7
Q ss_pred CCCcEEEecCCCCCCCc----CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEE
Q psy3787 27 RSLTELNLSYNQLTMLP----VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILD 102 (263)
Q Consensus 27 ~~L~~L~l~~n~l~~l~----~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~ 102 (263)
..+-.+++++|++-.++ .+.....|+.+++++|.+..+++..-...+.++++++++|.++.+|..+..++.|+.++
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 34667888888877555 25566788889999999999988866677789999999999999999999999999999
Q ss_pred ccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhC
Q psy3787 103 LSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKT 151 (263)
Q Consensus 103 l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~ 151 (263)
++.|.+...|..+..+.++..|+..+|.+..++-+.+.....-+..+.+
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgn 155 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGN 155 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcC
Confidence 9999999888888889999999999999999998866555444444433
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.61 E-value=1.1e-07 Score=87.73 Aligned_cols=90 Identities=27% Similarity=0.389 Sum_probs=77.6
Q ss_pred CCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCc-cccccccCCCCcCEEEccCCcCC-CccccccCCCcccEEEec
Q psy3787 50 NLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVPCELSSLFHLKSLFLG 127 (263)
Q Consensus 50 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~ 127 (263)
.++.|++++|.+.+..+..+..+++|+.|++++|.++ .+|..++.+++|+.|++++|.++ .+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677899999988777777889999999999999988 78888899999999999999988 578889999999999999
Q ss_pred CCCCCC-cchHHH
Q psy3787 128 GNPIKT-VRNDIL 139 (263)
Q Consensus 128 ~n~l~~-~~~~~~ 139 (263)
+|.+++ +|..+.
T Consensus 499 ~N~l~g~iP~~l~ 511 (623)
T PLN03150 499 GNSLSGRVPAALG 511 (623)
T ss_pred CCcccccCChHHh
Confidence 999887 676544
No 40
>KOG1859|consensus
Probab=98.58 E-value=4.4e-10 Score=100.76 Aligned_cols=128 Identities=34% Similarity=0.386 Sum_probs=97.1
Q ss_pred CCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecC
Q psy3787 5 LKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNN 83 (263)
Q Consensus 5 L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 83 (263)
|...++++|.+.. +.. +.-++.++.|+|++|+++.+..+..+++|++||+++|.+..++.-...++ +|..|.+++|
T Consensus 166 L~~a~fsyN~L~~--mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN 242 (1096)
T KOG1859|consen 166 LATASFSYNRLVL--MDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN 242 (1096)
T ss_pred HhhhhcchhhHHh--HHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeeccc
Confidence 4566777887776 544 77788899999999998888878888889999999998887765433333 3888899998
Q ss_pred cCccccccccCCCCcCEEEccCCcCCCccc--cccCCCcccEEEecCCCCCCcch
Q psy3787 84 KISEVSSNVGDLINLAILDLSDNELTDVPC--ELSSLFHLKSLFLGGNPIKTVRN 136 (263)
Q Consensus 84 ~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~n~l~~~~~ 136 (263)
.++++-+ +.++.+|+.||+++|-+..... .++.+..|+.|.+.||++.--|-
T Consensus 243 ~l~tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 243 ALTTLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred HHHhhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence 8887644 5678888889999987775432 25677788888999998876553
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.54 E-value=1.6e-07 Score=86.70 Aligned_cols=103 Identities=26% Similarity=0.398 Sum_probs=82.3
Q ss_pred CCcEEEecCCCCC-CCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCc-cccccccCCCCcCEEEcc
Q psy3787 28 SLTELNLSYNQLT-MLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLS 104 (263)
Q Consensus 28 ~L~~L~l~~n~l~-~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~ 104 (263)
.++.|+|++|.+. .+| .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++ .+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3778888888887 344 4778889999999999888766666888899999999999888 778888889999999999
Q ss_pred CCcCC-CccccccCC-CcccEEEecCCC
Q psy3787 105 DNELT-DVPCELSSL-FHLKSLFLGGNP 130 (263)
Q Consensus 105 ~n~l~-~l~~~~~~l-~~L~~L~l~~n~ 130 (263)
+|.++ .+|..++.. .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 99887 577766543 356677777774
No 42
>KOG1909|consensus
Probab=98.52 E-value=3.4e-08 Score=81.78 Aligned_cols=232 Identities=16% Similarity=0.157 Sum_probs=146.4
Q ss_pred CCCCCEEEeecCccCCCCccc----cCCCCCCcEEEecCCCCC----CCc--------CCCCCCCCcEEEecCCCCCCCc
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPL----FIDMRSLTELNLSYNQLT----MLP--------VCTDCKNLTHLLLGFNKINNME 65 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~----~~~l~~L~~L~l~~n~l~----~l~--------~~~~~~~L~~L~l~~n~~~~~~ 65 (263)
+..++.+++++|-+....... +...+.|+..+++.--.. .+| .+..+++|+.+++|+|.+..-.
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 356788999999887633222 777888999888875322 233 3456779999999999877322
Q ss_pred ----hhhhhCCCCccEEEeecCcCcccc--------------ccccCCCCcCEEEccCCcCCCc-----cccccCCCccc
Q psy3787 66 ----NDYFLTLTKLSLLNLKNNKISEVS--------------SNVGDLINLAILDLSDNELTDV-----PCELSSLFHLK 122 (263)
Q Consensus 66 ----~~~~~~l~~L~~L~l~~~~l~~lp--------------~~~~~l~~L~~L~l~~n~l~~l-----~~~~~~l~~L~ 122 (263)
...++.+..|++|.+.+|.+.... .....-+.|+++...+|++..- ...+...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 233456788999999999887321 1235667899999999988753 33467788999
Q ss_pred EEEecCCCCCCcchHHHHhH---HHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--ccc-cc
Q psy3787 123 SLFLGGNPIKTVRNDILQDS---KRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVI-NI 196 (263)
Q Consensus 123 ~L~l~~n~l~~~~~~~~~~~---~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~-~l 196 (263)
.+.+..|.|..-........ .+.++.|++.++.+. ..+ ...+...++.++.|++++++ .+. .-
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft-----~eg------s~~LakaL~s~~~L~El~l~dcll~~~G 257 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT-----LEG------SVALAKALSSWPHLRELNLGDCLLENEG 257 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhh-----hHH------HHHHHHHhcccchheeeccccccccccc
Confidence 99999987765332222222 455666666666541 011 22344557778899999988 443 22
Q ss_pred ChhHHhh-cCCccceeEEEeccCCcccc--cCcccc--ccccccccccccCCce
Q psy3787 197 PESVYMR-GMSSQECTIEINIDKYKLDR--TKTLTL--CKVINIPESVYMNRPF 245 (263)
Q Consensus 197 ~~~~~~~-~~~~~~L~~~L~ls~n~l~~--ip~~~~--~~~~~l~~~~~~~~~~ 245 (263)
...+... ..+.+.|+. +.+.+|.|+. .-...- ...+.+..+.++||..
T Consensus 258 a~a~~~al~~~~p~L~v-l~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 258 AIAFVDALKESAPSLEV-LELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHHhccCCCCce-eccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2222222 222347998 9999998873 111111 1235556666777764
No 43
>KOG1644|consensus
Probab=98.45 E-value=5.5e-07 Score=69.40 Aligned_cols=121 Identities=26% Similarity=0.281 Sum_probs=94.0
Q ss_pred CEEEeecCccCCCCccccCC-CCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCc
Q psy3787 6 KTLDLSHNKLVSDSLPLFID-MRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK 84 (263)
Q Consensus 6 ~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 84 (263)
+++++.+.++.. +..++. ..+...+|+++|.+..++.|..++.|.+|.+++|+|+.+.+..-.-++++..|.+++|+
T Consensus 22 ~e~~LR~lkip~--ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 22 RELDLRGLKIPV--IENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred cccccccccccc--hhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 445666665444 222222 34677899999999988889999999999999999999888766667889999999999
Q ss_pred Cccccc--cccCCCCcCEEEccCCcCCCccc----cccCCCcccEEEecC
Q psy3787 85 ISEVSS--NVGDLINLAILDLSDNELTDVPC----ELSSLFHLKSLFLGG 128 (263)
Q Consensus 85 l~~lp~--~~~~l~~L~~L~l~~n~l~~l~~----~~~~l~~L~~L~l~~ 128 (263)
+.++.+ -+..++.|++|.+-+|.+..-+. .+..+++|+.||+++
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 987643 35678899999999998875432 377899999998765
No 44
>KOG1859|consensus
Probab=98.42 E-value=1.2e-08 Score=91.86 Aligned_cols=129 Identities=23% Similarity=0.202 Sum_probs=102.0
Q ss_pred CCcEEEecCCCCCCCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCC
Q psy3787 28 SLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDN 106 (263)
Q Consensus 28 ~L~~L~l~~n~l~~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n 106 (263)
.|.+.++++|.+..+. ++.-++.+++|++++|+++.+. ++..+++|++||++.|.++.+|..-..-..|+.|.+++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeeccc
Confidence 4666777777777555 3566788999999999999886 588999999999999999999875333334999999999
Q ss_pred cCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccc
Q psy3787 107 ELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQ 159 (263)
Q Consensus 107 ~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 159 (263)
.++++- .+.++.+|+.||+++|-|.+...-.+--....|..|.+.++++.|.
T Consensus 243 ~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 243 ALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred HHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 998875 5788999999999999888765332222367788888888888665
No 45
>KOG4658|consensus
Probab=98.34 E-value=4.6e-07 Score=86.04 Aligned_cols=122 Identities=25% Similarity=0.215 Sum_probs=62.3
Q ss_pred CEEEeecCccCCCCccccCCCCCCcEEEecCCC--CCCCcC--CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQ--LTMLPV--CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 6 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~--l~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
+...+.+|.+.. ++.-..++.|+.|-+..|. +..++. |..++.|+.||+++|.-....|..++.+-+|++|+++
T Consensus 526 rr~s~~~~~~~~--~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 526 RRMSLMNNKIEH--IAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS 603 (889)
T ss_pred eEEEEeccchhh--ccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence 444444554443 3333334455555555554 333332 5555666666666554333333445556666666666
Q ss_pred cCcCccccccccCCCCcCEEEccCCcCC-CccccccCCCcccEEEecCC
Q psy3787 82 NNKISEVSSNVGDLINLAILDLSDNELT-DVPCELSSLFHLKSLFLGGN 129 (263)
Q Consensus 82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~n 129 (263)
++.++.+|..+.++..|.+|++..+.-. .+|.....+.+|++|.+...
T Consensus 604 ~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 604 DTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred CCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 6666666666666666666665554322 33333444556665555443
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.29 E-value=9.5e-07 Score=51.61 Aligned_cols=40 Identities=35% Similarity=0.570 Sum_probs=24.7
Q ss_pred CCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcC
Q psy3787 3 SHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPV 44 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~ 44 (263)
++|++|++++|+++. +|+ ++++++|+.|++++|+++.++.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCCCcC
Confidence 356667777776665 666 6667777777777666665543
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.26 E-value=1.6e-06 Score=50.67 Aligned_cols=39 Identities=51% Similarity=0.743 Sum_probs=23.0
Q ss_pred CcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcc
Q psy3787 97 NLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVR 135 (263)
Q Consensus 97 ~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~ 135 (263)
+|++|++++|.|+.+|..++.+++|+.|++++|+++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 456666666666666655666666666666666666544
No 48
>KOG4658|consensus
Probab=98.23 E-value=8.2e-07 Score=84.33 Aligned_cols=131 Identities=25% Similarity=0.400 Sum_probs=105.1
Q ss_pred ccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCC--CCCCchhhhhCCCCccEEEeecC-cCccccccccCCC
Q psy3787 20 LPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK--INNMENDYFLTLTKLSLLNLKNN-KISEVSSNVGDLI 96 (263)
Q Consensus 20 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~ 96 (263)
.|........+...+.+|.+..++.-..++.|++|-+.+|. +..+....|..++.|+.||+++| .++++|..++.+.
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred cccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence 45566667888999999998877765566789999999996 77888888999999999999987 6779999999999
Q ss_pred CcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhC
Q psy3787 97 NLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKT 151 (263)
Q Consensus 97 ~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~ 151 (263)
+|++|+++++.++.+|..++.+..|.+|++..+.-....+.+... +..|+++.+
T Consensus 596 ~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~-L~~Lr~L~l 649 (889)
T KOG4658|consen 596 HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLE-LQSLRVLRL 649 (889)
T ss_pred hhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhh-cccccEEEe
Confidence 999999999999999999999999999999987543322222221 235555554
No 49
>KOG4579|consensus
Probab=98.22 E-value=4.7e-08 Score=70.76 Aligned_cols=107 Identities=26% Similarity=0.367 Sum_probs=89.7
Q ss_pred CCEEEeecCccCCCCccc----cCCCCCCcEEEecCCCCCCCcC-C-CCCCCCcEEEecCCCCCCCchhhhhCCCCccEE
Q psy3787 5 LKTLDLSHNKLVSDSLPL----FIDMRSLTELNLSYNQLTMLPV-C-TDCKNLTHLLLGFNKINNMENDYFLTLTKLSLL 78 (263)
Q Consensus 5 L~~L~l~~n~~~~~~~~~----~~~l~~L~~L~l~~n~l~~l~~-~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 78 (263)
+..++++.+++-. +++ +....+|+..++++|.+..+|. | ...+..+.+++++|.+.++|.. +..++.|+.+
T Consensus 29 ~h~ldLssc~lm~--i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLMY--IADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSL 105 (177)
T ss_pred hhhcccccchhhH--HHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhc
Confidence 4567788887664 444 6677788899999999998873 3 3456889999999999999888 8999999999
Q ss_pred EeecCcCccccccccCCCCcCEEEccCCcCCCcccc
Q psy3787 79 NLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE 114 (263)
Q Consensus 79 ~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~ 114 (263)
+++.|.+...|..+..+.++-.|+..+|.+..+|-.
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 999999999999887799999999999988887655
No 50
>KOG1644|consensus
Probab=98.10 E-value=6e-06 Score=63.78 Aligned_cols=112 Identities=26% Similarity=0.360 Sum_probs=84.1
Q ss_pred cccCCCCCCcEEEecCCCCCCCcCCC-CCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCcccccccc-CCCCc
Q psy3787 21 PLFIDMRSLTELNLSYNQLTMLPVCT-DCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVG-DLINL 98 (263)
Q Consensus 21 ~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~-~l~~L 98 (263)
|.+.....-+.+++.+.++..+..++ ...+...+|+++|.+..... |..+++|.+|.+.+|+|+.+...+. .+++|
T Consensus 13 pqy~~~~~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l 90 (233)
T KOG1644|consen 13 PQYINSVRERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNL 90 (233)
T ss_pred hhhhhhccccccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhcccc
Confidence 33444444667778877776554322 24567789999999887654 7788999999999999999877664 45679
Q ss_pred CEEEccCCcCCCccc--cccCCCcccEEEecCCCCCCc
Q psy3787 99 AILDLSDNELTDVPC--ELSSLFHLKSLFLGGNPIKTV 134 (263)
Q Consensus 99 ~~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~n~l~~~ 134 (263)
+.|.+.+|.|.++.. -+..++.|++|.+-+|+++.-
T Consensus 91 ~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k 128 (233)
T KOG1644|consen 91 KTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHK 128 (233)
T ss_pred ceEEecCcchhhhhhcchhccCCccceeeecCCchhcc
Confidence 999999999987643 378899999999999876553
No 51
>KOG2982|consensus
Probab=97.91 E-value=2e-06 Score=70.23 Aligned_cols=84 Identities=27% Similarity=0.329 Sum_probs=51.2
Q ss_pred CCCCEEEeecCccCCCC-ccc-cCCCCCCcEEEecCCCCCC-CcCC-CCCCCCcEEEecCCCCCCC-chhhhhCCCCccE
Q psy3787 3 SHLKTLDLSHNKLVSDS-LPL-FIDMRSLTELNLSYNQLTM-LPVC-TDCKNLTHLLLGFNKINNM-ENDYFLTLTKLSL 77 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~-~~~-~~~l~~L~~L~l~~n~l~~-l~~~-~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~ 77 (263)
+.++++|+.+|.++.++ +.+ +.++|+|++|+++.|++.. +... ....+|+.|-+.+..+... ....+..++.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 34667777777776622 222 6677777777777777663 2222 3456777777777766522 2233455667777
Q ss_pred EEeecCcCc
Q psy3787 78 LNLKNNKIS 86 (263)
Q Consensus 78 L~l~~~~l~ 86 (263)
+.++.|+++
T Consensus 151 lHmS~N~~r 159 (418)
T KOG2982|consen 151 LHMSDNSLR 159 (418)
T ss_pred hhhccchhh
Confidence 777777655
No 52
>KOG3665|consensus
Probab=97.86 E-value=9.7e-06 Score=75.29 Aligned_cols=128 Identities=26% Similarity=0.290 Sum_probs=96.3
Q ss_pred CCCEEEeecCccCCCCccc--cCCCCCCcEEEecCCCCCCCc---CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEE
Q psy3787 4 HLKTLDLSHNKLVSDSLPL--FIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLL 78 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~l~~l~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 78 (263)
+|+.|++++........+. ...+|.|+.|.+.+-.+..-. -..++++|..||+|+++++.+ ..++.+++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 5788899887655434444 456899999999998776322 256789999999999999887 448899999999
Q ss_pred EeecCcCcccc--ccccCCCCcCEEEccCCcCCCcc-------ccccCCCcccEEEecCCCCCC
Q psy3787 79 NLKNNKISEVS--SNVGDLINLAILDLSDNELTDVP-------CELSSLFHLKSLFLGGNPIKT 133 (263)
Q Consensus 79 ~l~~~~l~~lp--~~~~~l~~L~~L~l~~n~l~~l~-------~~~~~l~~L~~L~l~~n~l~~ 133 (263)
.+.+-.+.... ..+..+++|++||+|......-+ +.-..+++|+.||.+++.+..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 99887777543 24678999999999987554322 223568999999999876554
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.67 E-value=3e-05 Score=62.77 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=12.9
Q ss_pred CCCcccEEEecCCCCCCcchHHHHh
Q psy3787 117 SLFHLKSLFLGGNPIKTVRNDILQD 141 (263)
Q Consensus 117 ~l~~L~~L~l~~n~l~~~~~~~~~~ 141 (263)
.-+.|+.+....|++...+......
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~ 179 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAA 179 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHH
Confidence 3445555555555555555444433
No 54
>KOG2120|consensus
Probab=97.64 E-value=1.1e-06 Score=71.75 Aligned_cols=81 Identities=26% Similarity=0.225 Sum_probs=34.7
Q ss_pred CcEEEecCCCCC-CCchhhhhCCCCccEEEeecCcCc-cccccccCCCCcCEEEccCC-cCCCcc--ccccCCCcccEEE
Q psy3787 51 LTHLLLGFNKIN-NMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDN-ELTDVP--CELSSLFHLKSLF 125 (263)
Q Consensus 51 L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~n-~l~~l~--~~~~~l~~L~~L~ 125 (263)
++++|+++..++ ......++.+.+|+.+.+.++.+. .+...+..-.+|+.++++.+ .++... ..+..++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 444555554444 111222334444555555554444 23333344444555555443 343221 1244455555555
Q ss_pred ecCCCC
Q psy3787 126 LGGNPI 131 (263)
Q Consensus 126 l~~n~l 131 (263)
++.+.+
T Consensus 267 lsWc~l 272 (419)
T KOG2120|consen 267 LSWCFL 272 (419)
T ss_pred chHhhc
Confidence 555433
No 55
>KOG3665|consensus
Probab=97.63 E-value=4.6e-05 Score=70.88 Aligned_cols=109 Identities=22% Similarity=0.276 Sum_probs=85.1
Q ss_pred CCCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCC-CchhhhhCCCCccEE
Q psy3787 1 MLSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINN-MENDYFLTLTKLSLL 78 (263)
Q Consensus 1 ~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L 78 (263)
++|+|++|.+.+-.+....... ..++++|..||+++++++.+..++.+++|+.|.+.+=.+.. ..-..+..+++|+.|
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 5899999999998877644445 77899999999999999988888889999998887766663 222336789999999
Q ss_pred EeecCcCcccc---c----cccCCCCcCEEEccCCcCC
Q psy3787 79 NLKNNKISEVS---S----NVGDLINLAILDLSDNELT 109 (263)
Q Consensus 79 ~l~~~~l~~lp---~----~~~~l~~L~~L~l~~n~l~ 109 (263)
|+++.+-...+ . --..++.|+.||.+++.+.
T Consensus 226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred eccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 99997554222 1 1134789999999998776
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.61 E-value=7.3e-05 Score=60.58 Aligned_cols=132 Identities=23% Similarity=0.244 Sum_probs=65.6
Q ss_pred CCCCCEEEeecCccCCCCccc----cCCCCCCcEEEecCCCCCCCc---------------CCCCCCCCcEEEecCCCCC
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPL----FIDMRSLTELNLSYNQLTMLP---------------VCTDCKNLTHLLLGFNKIN 62 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~----~~~l~~L~~L~l~~n~l~~l~---------------~~~~~~~L~~L~l~~n~~~ 62 (263)
++.|+..++++|.|....++. +++...|.+|.+++|.+..+. ....-+.|+.+.+.+|++.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 455666666666665533333 455556666666666554221 0123455666666666554
Q ss_pred CCc----hhhhhCCCCccEEEeecCcCcc--c----cccccCCCCcCEEEccCCcCCC-----ccccccCCCcccEEEec
Q psy3787 63 NME----NDYFLTLTKLSLLNLKNNKISE--V----SSNVGDLINLAILDLSDNELTD-----VPCELSSLFHLKSLFLG 127 (263)
Q Consensus 63 ~~~----~~~~~~l~~L~~L~l~~~~l~~--l----p~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~ 127 (263)
..+ ...+.....|+.+.+..|.|+. + -..+.-+.+|+.|++.+|-++. +...+..++.|+.|.+.
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 322 2222333455666666665551 1 1122344556666666665542 22234445555666666
Q ss_pred CCCCCC
Q psy3787 128 GNPIKT 133 (263)
Q Consensus 128 ~n~l~~ 133 (263)
+|.++.
T Consensus 251 DClls~ 256 (388)
T COG5238 251 DCLLSN 256 (388)
T ss_pred chhhcc
Confidence 655544
No 57
>KOG2120|consensus
Probab=97.48 E-value=7e-06 Score=67.14 Aligned_cols=176 Identities=19% Similarity=0.167 Sum_probs=111.3
Q ss_pred CCcEEEecCCCCCCCc---CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecC-cCccc--cccccCCCCcCEE
Q psy3787 28 SLTELNLSYNQLTMLP---VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNN-KISEV--SSNVGDLINLAIL 101 (263)
Q Consensus 28 ~L~~L~l~~n~l~~l~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~-~l~~l--p~~~~~l~~L~~L 101 (263)
.++++|++...++.-. .+..+.+|+.|.+.++++.+-....++...+|+.++++.+ ++++. ...+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5888999988887322 3567888888899999888766667888889999999986 67643 3346788889999
Q ss_pred EccCCcCCC--ccccccC-CCcccEEEecCCCCC--CcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCccccc
Q psy3787 102 DLSDNELTD--VPCELSS-LFHLKSLFLGGNPIK--TVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEIN 176 (263)
Q Consensus 102 ~l~~n~l~~--l~~~~~~-l~~L~~L~l~~n~l~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (263)
+++-+.+.. +...+.. -++|..|+++|+.-. .-+-+........+.+|++++... + .....
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~----l----------~~~~~ 331 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM----L----------KNDCF 331 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc----c----------CchHH
Confidence 888876652 1111221 236777777776321 112222222244566677765442 0 12233
Q ss_pred ccccccCCcceeccc-cccccChhHHhhcCCccceeEEEeccCC
Q psy3787 177 IDKYKLDRTKTLTLC-KVINIPESVYMRGMSSQECTIEINIDKY 219 (263)
Q Consensus 177 ~~~~~~~~L~~L~l~-~~~~l~~~~~~~~~~~~~L~~~L~ls~n 219 (263)
..+..++.|++|.++ .....|..+.... +.++|.+ ||+-++
T Consensus 332 ~~~~kf~~L~~lSlsRCY~i~p~~~~~l~-s~psl~y-Ldv~g~ 373 (419)
T KOG2120|consen 332 QEFFKFNYLQHLSLSRCYDIIPETLLELN-SKPSLVY-LDVFGC 373 (419)
T ss_pred HHHHhcchheeeehhhhcCCChHHeeeec-cCcceEE-EEeccc
Confidence 446677888888888 4444444433332 3567887 888776
No 58
>KOG2982|consensus
Probab=97.46 E-value=3.7e-05 Score=63.04 Aligned_cols=104 Identities=23% Similarity=0.224 Sum_probs=54.7
Q ss_pred CCcEEEecCCCCCCCcC---C-CCCCCCcEEEecCCCCCC--CchhhhhCCCCccEEEeecCcCccccccc-cCCCCcCE
Q psy3787 28 SLTELNLSYNQLTMLPV---C-TDCKNLTHLLLGFNKINN--MENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAI 100 (263)
Q Consensus 28 ~L~~L~l~~n~l~~l~~---~-~~~~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~ 100 (263)
.++.+.+.++.|..... + ..+..++.+|+.+|.+.. .....+.+++.|++|+++.|.+...-... ....+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 34455555555553332 1 234556666777776662 22333456677777777777665322222 24556666
Q ss_pred EEccCCcCC--CccccccCCCcccEEEecCCCC
Q psy3787 101 LDLSDNELT--DVPCELSSLFHLKSLFLGGNPI 131 (263)
Q Consensus 101 L~l~~n~l~--~l~~~~~~l~~L~~L~l~~n~l 131 (263)
+-+++..+. .....+..++.++.+.++.|.+
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 666666543 3333445555555555555543
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.41 E-value=0.00096 Score=57.95 Aligned_cols=52 Identities=25% Similarity=0.300 Sum_probs=25.7
Q ss_pred CCCCEEEeecCccCCCCccccCCCCCCcEEEecCC-CCCCCcCCCCCCCCcEEEecCC
Q psy3787 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYN-QLTMLPVCTDCKNLTHLLLGFN 59 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~L~~L~l~~n 59 (263)
.+++.|++++|.++. +|.+ -.+|+.|.+++| .+..+|..- ..+|+.|.+++|
T Consensus 52 ~~l~~L~Is~c~L~s--LP~L--P~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~C 104 (426)
T PRK15386 52 RASGRLYIKDCDIES--LPVL--PNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHC 104 (426)
T ss_pred cCCCEEEeCCCCCcc--cCCC--CCCCcEEEccCCCCcccCCchh-hhhhhheEccCc
Confidence 345666666665554 3421 124666666553 244444211 235666666655
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.34 E-value=0.00057 Score=59.32 Aligned_cols=81 Identities=17% Similarity=0.269 Sum_probs=55.9
Q ss_pred cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCC-CCCCchhhhhCCCCccEEEeecC-cCccccccccCCCCcCE
Q psy3787 23 FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK-INNMENDYFLTLTKLSLLNLKNN-KISEVSSNVGDLINLAI 100 (263)
Q Consensus 23 ~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~ 100 (263)
+..+++++.|++++|.+..+|.+ ..+|+.|.++++. ++.++ +.+ ..+|+.|.+++| .+..+|.. |+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCC-chh--hhhhhheEccCcccccccccc------cce
Confidence 55678999999999999988843 3479999998754 44443 323 357899999998 77777654 555
Q ss_pred EEccCCc---CCCcccc
Q psy3787 101 LDLSDNE---LTDVPCE 114 (263)
Q Consensus 101 L~l~~n~---l~~l~~~ 114 (263)
|++..+. +..+|..
T Consensus 117 L~L~~n~~~~L~~LPss 133 (426)
T PRK15386 117 LEIKGSATDSIKNVPNG 133 (426)
T ss_pred EEeCCCCCcccccCcch
Confidence 6666554 3345543
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.29 E-value=0.0014 Score=47.49 Aligned_cols=112 Identities=15% Similarity=0.377 Sum_probs=60.6
Q ss_pred cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccc-cccCCCCcC
Q psy3787 23 FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSS-NVGDLINLA 99 (263)
Q Consensus 23 ~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~ 99 (263)
|.++++|+.+.+.. .+..++ .|..+.+++.+.+..+ +..+...+|..+..++.+.+.+ .+..++. .+..+.+++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 77778888888875 455554 4777778888888774 7777777787777788888865 5555554 355678888
Q ss_pred EEEccCCcCCCccc-cccCCCcccEEEecCCCCCCcchHHHH
Q psy3787 100 ILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKTVRNDILQ 140 (263)
Q Consensus 100 ~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~ 140 (263)
.+.+..+ +..++. .+..+ .++.+.+.. .+..++...+.
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~ 123 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFK 123 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccc
Confidence 8888665 555543 36666 888887765 55556555443
No 62
>KOG2739|consensus
Probab=97.20 E-value=0.00017 Score=57.90 Aligned_cols=103 Identities=28% Similarity=0.242 Sum_probs=61.0
Q ss_pred cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCC--CCC-CCchhhhhCCCCccEEEeecCcCccccc--cccCCCC
Q psy3787 23 FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFN--KIN-NMENDYFLTLTKLSLLNLKNNKISEVSS--NVGDLIN 97 (263)
Q Consensus 23 ~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n--~~~-~~~~~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~ 97 (263)
.-.+..|+.+.+.+..++.+..+..+++|+.|.++.| ++. ++... ...+++|+++++++|+++.+.. .+..+.+
T Consensus 39 ~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhhhhcc
Confidence 3345667777777777776666677778888888888 444 22222 2334777777777777764211 1345556
Q ss_pred cCEEEccCCcCCCcc----ccccCCCcccEEEe
Q psy3787 98 LAILDLSDNELTDVP----CELSSLFHLKSLFL 126 (263)
Q Consensus 98 L~~L~l~~n~l~~l~----~~~~~l~~L~~L~l 126 (263)
|..|++.+|..+.+. ..+.-+++|.+++-
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 666777666555431 12445555555543
No 63
>KOG2123|consensus
Probab=97.16 E-value=1.1e-05 Score=65.48 Aligned_cols=82 Identities=26% Similarity=0.313 Sum_probs=55.4
Q ss_pred CCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCcccccc--ccCCCCcCEEEc
Q psy3787 26 MRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSN--VGDLINLAILDL 103 (263)
Q Consensus 26 l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~--~~~l~~L~~L~l 103 (263)
+.+.+.|++.+|.++.+.-...++.|+.|.++-|.|+.+.+ +..+++|++|++..|.|..+.+- +.++++|+.|.+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 44566677777777766656667777777777777776655 56677777777777777766543 466777777777
Q ss_pred cCCcCC
Q psy3787 104 SDNELT 109 (263)
Q Consensus 104 ~~n~l~ 109 (263)
..|...
T Consensus 96 ~ENPCc 101 (388)
T KOG2123|consen 96 DENPCC 101 (388)
T ss_pred ccCCcc
Confidence 766543
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.12 E-value=0.0027 Score=45.98 Aligned_cols=111 Identities=21% Similarity=0.415 Sum_probs=52.9
Q ss_pred CCCCEEEeecCccCCCCccc--cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEE
Q psy3787 3 SHLKTLDLSHNKLVSDSLPL--FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLL 78 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 78 (263)
++|+.+.+.. .+.. ++. |.++++|+.+.+..+ +..++ .|..+++++.+.+.. .+..+....|..+.+++.+
T Consensus 12 ~~l~~i~~~~-~~~~--I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 12 SNLESITFPN-TIKK--IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp TT--EEEETS-T--E--E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCEEEECC-CeeE--eChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 4566666664 3444 333 777777888887764 55554 366776777777765 5555556667777778777
Q ss_pred EeecCcCcccccc-ccCCCCcCEEEccCCcCCCccc-cccCCCcc
Q psy3787 79 NLKNNKISEVSSN-VGDLINLAILDLSDNELTDVPC-ELSSLFHL 121 (263)
Q Consensus 79 ~l~~~~l~~lp~~-~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L 121 (263)
.+..+ ++.++.. +... .++.+.+.. .+..++. .|..+++|
T Consensus 87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 77654 5555443 4454 777777665 4444533 35555544
No 65
>KOG2123|consensus
Probab=96.74 E-value=0.00016 Score=58.78 Aligned_cols=98 Identities=21% Similarity=0.256 Sum_probs=76.6
Q ss_pred CCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCCcCCCcccc--ccCCCcccEEE
Q psy3787 48 CKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE--LSSLFHLKSLF 125 (263)
Q Consensus 48 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~--~~~l~~L~~L~ 125 (263)
+.+.+.|++.++.+.++ +....|+.|+.|.++-|+|+.+.. +..++.|++|++..|.|.++.+- +.++++|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 45667789999998876 346789999999999999998865 46889999999999999988643 78999999999
Q ss_pred ecCCCCCC-cchHHHHhHHHHhhh
Q psy3787 126 LGGNPIKT-VRNDILQDSKRIISH 148 (263)
Q Consensus 126 l~~n~l~~-~~~~~~~~~~~~l~~ 148 (263)
+..|+-.+ -+...-...++.|-+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPn 118 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPN 118 (388)
T ss_pred hccCCcccccchhHHHHHHHHccc
Confidence 99998776 444443333344433
No 66
>KOG2739|consensus
Probab=96.02 E-value=0.0042 Score=50.10 Aligned_cols=106 Identities=28% Similarity=0.283 Sum_probs=70.7
Q ss_pred CCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCC---CCcC-CCCCCCCcEEEecCCCCC---CCchhhhhCCCCcc
Q psy3787 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT---MLPV-CTDCKNLTHLLLGFNKIN---NMENDYFLTLTKLS 76 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~---~l~~-~~~~~~L~~L~l~~n~~~---~~~~~~~~~l~~L~ 76 (263)
.++.+++.+..++. +..+-.+++|++|.++.|.+. .++. ...+++|++++++.|++. ++.+ +..+.+|.
T Consensus 44 ~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~ 119 (260)
T KOG2739|consen 44 ELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLK 119 (260)
T ss_pred chhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchh
Confidence 44555555655555 555778889999999999443 3332 345699999999999876 3333 56778899
Q ss_pred EEEeecCcCccccc----cccCCCCcCEEEccCCcCCCccc
Q psy3787 77 LLNLKNNKISEVSS----NVGDLINLAILDLSDNELTDVPC 113 (263)
Q Consensus 77 ~L~l~~~~l~~lp~----~~~~l~~L~~L~l~~n~l~~l~~ 113 (263)
.|++.+|..+.+.. .+.-+++|++++..+..=...|.
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~ 160 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAPE 160 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccccccCCccccc
Confidence 99999998775421 24556777777755543333343
No 67
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.92 E-value=0.0041 Score=28.17 Aligned_cols=16 Identities=6% Similarity=0.229 Sum_probs=10.7
Q ss_pred ceeEEEeccCCcccccC
Q psy3787 209 ECTIEINIDKYKLDRTK 225 (263)
Q Consensus 209 ~L~~~L~ls~n~l~~ip 225 (263)
+|+. |++++|+++.+|
T Consensus 2 ~L~~-L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRT-LDLSNNRLTSLP 17 (17)
T ss_dssp T-SE-EEETSS--SSE-
T ss_pred ccCE-EECCCCCCCCCc
Confidence 5898 999999998886
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.67 E-value=0.0056 Score=29.72 Aligned_cols=15 Identities=60% Similarity=0.904 Sum_probs=6.1
Q ss_pred cCEEEccCCcCCCcc
Q psy3787 98 LAILDLSDNELTDVP 112 (263)
Q Consensus 98 L~~L~l~~n~l~~l~ 112 (263)
|++|++++|.++.+|
T Consensus 2 L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIP 16 (22)
T ss_dssp ESEEEETSSEESEEG
T ss_pred ccEEECCCCcCEeCC
Confidence 334444444444333
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.54 E-value=0.0073 Score=29.32 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=10.8
Q ss_pred ccEEEeecCcCcccccccc
Q psy3787 75 LSLLNLKNNKISEVSSNVG 93 (263)
Q Consensus 75 L~~L~l~~~~l~~lp~~~~ 93 (263)
|++|++++|+++.+|..++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5556666666655555543
No 70
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.01 E-value=0.013 Score=29.57 Aligned_cols=21 Identities=5% Similarity=0.101 Sum_probs=18.3
Q ss_pred cceeEEEeccCCcccccCcccc
Q psy3787 208 QECTIEINIDKYKLDRTKTLTL 229 (263)
Q Consensus 208 ~~L~~~L~ls~n~l~~ip~~~~ 229 (263)
++|+. |++++|+|+.+|...+
T Consensus 2 ~~L~~-L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRE-LDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCE-EECCCCcCCcCCHHHc
Confidence 46998 9999999999998765
No 71
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.01 E-value=0.013 Score=29.57 Aligned_cols=21 Identities=5% Similarity=0.101 Sum_probs=18.3
Q ss_pred cceeEEEeccCCcccccCcccc
Q psy3787 208 QECTIEINIDKYKLDRTKTLTL 229 (263)
Q Consensus 208 ~~L~~~L~ls~n~l~~ip~~~~ 229 (263)
++|+. |++++|+|+.+|...+
T Consensus 2 ~~L~~-L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRE-LDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCE-EECCCCcCCcCCHHHc
Confidence 46998 9999999999998765
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.17 E-value=0.047 Score=27.49 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=15.8
Q ss_pred CcccEEEecCCCCCCcchHHHH
Q psy3787 119 FHLKSLFLGGNPIKTVRNDILQ 140 (263)
Q Consensus 119 ~~L~~L~l~~n~l~~~~~~~~~ 140 (263)
++|+.|++++|.++.+|...+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 5677777888877777776553
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.17 E-value=0.047 Score=27.49 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=15.8
Q ss_pred CcccEEEecCCCCCCcchHHHH
Q psy3787 119 FHLKSLFLGGNPIKTVRNDILQ 140 (263)
Q Consensus 119 ~~L~~L~l~~n~l~~~~~~~~~ 140 (263)
++|+.|++++|.++.+|...+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 5677777888877777776553
No 74
>KOG4308|consensus
Probab=93.16 E-value=0.0012 Score=59.03 Aligned_cols=182 Identities=17% Similarity=0.169 Sum_probs=96.8
Q ss_pred CcEEEecCCCCCCCc------CCCCCCCCcEEEecCCCCCCCchhhh----hCC-CCccEEEeecCcCc-----cccccc
Q psy3787 29 LTELNLSYNQLTMLP------VCTDCKNLTHLLLGFNKINNMENDYF----LTL-TKLSLLNLKNNKIS-----EVSSNV 92 (263)
Q Consensus 29 L~~L~l~~n~l~~l~------~~~~~~~L~~L~l~~n~~~~~~~~~~----~~l-~~L~~L~l~~~~l~-----~lp~~~ 92 (263)
+..+++.+|.+..-. .+....+|+.|++++|.++......+ ... ..+++|.+..|.++ .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 566666677666322 24556667777777777663222111 122 34556666666665 234445
Q ss_pred cCCCCcCEEEccCCcCCC-----cccccc----CCCcccEEEecCCCCCCcchHHHHhH----HHHhhhhhCCCCccccc
Q psy3787 93 GDLINLAILDLSDNELTD-----VPCELS----SLFHLKSLFLGGNPIKTVRNDILQDS----KRIISHIKTSRLDYHCQ 159 (263)
Q Consensus 93 ~~l~~L~~L~l~~n~l~~-----l~~~~~----~l~~L~~L~l~~n~l~~~~~~~~~~~----~~~l~~l~~~~~~~~~~ 159 (263)
.....++.++++.|.+.. ++..+. ...+++.+.+.++.++.......... ...+..+++..+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~---- 244 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK---- 244 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC----
Confidence 556667777777776642 122233 46677778888777764333332222 1112233333222
Q ss_pred ccCCCCCCCcCCccccccccccc-CCcceeccc--ccc-ccChhHHhhcCCccceeEEEeccCCccc
Q psy3787 160 NVDGGGMSSQESTSEINIDKYKL-DRTKTLTLC--KVI-NIPESVYMRGMSSQECTIEINIDKYKLD 222 (263)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~--~~~-~l~~~~~~~~~~~~~L~~~L~ls~n~l~ 222 (263)
+.+.+ .....+.+..+ +.++.++++ .++ .-..++.+.....++++. +.+++|.+.
T Consensus 245 -l~d~g------~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~-l~l~~n~l~ 303 (478)
T KOG4308|consen 245 -LGDVG------VEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEE-LSLSNNPLT 303 (478)
T ss_pred -cchHH------HHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHH-hhcccCccc
Confidence 22222 33344445555 677788877 443 333344444444456887 888888765
No 75
>KOG0473|consensus
Probab=92.81 E-value=0.0015 Score=52.07 Aligned_cols=87 Identities=21% Similarity=0.163 Sum_probs=59.1
Q ss_pred CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEE
Q psy3787 45 CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSL 124 (263)
Q Consensus 45 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L 124 (263)
+......+.||++.|++...... |+-++.+..++++.|.+..+|..+..+..+++++.-.|..+..|.+++..+.++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 34445566677777765544333 55566677777777777777777766666777777777777777777777777777
Q ss_pred EecCCCCC
Q psy3787 125 FLGGNPIK 132 (263)
Q Consensus 125 ~l~~n~l~ 132 (263)
+..+|++.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 77777644
No 76
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=88.50 E-value=0.29 Score=24.72 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=16.5
Q ss_pred ceeEEEeccCCcccccCccc
Q psy3787 209 ECTIEINIDKYKLDRTKTLT 228 (263)
Q Consensus 209 ~L~~~L~ls~n~l~~ip~~~ 228 (263)
+|+. |++++|+++.+|...
T Consensus 3 ~L~~-L~vs~N~Lt~LPeL~ 21 (26)
T smart00364 3 SLKE-LNVSNNQLTSLPELX 21 (26)
T ss_pred ccce-eecCCCccccCcccc
Confidence 5888 999999999999744
No 77
>KOG4341|consensus
Probab=86.74 E-value=0.065 Score=46.40 Aligned_cols=35 Identities=26% Similarity=0.203 Sum_probs=18.2
Q ss_pred CCCcCEEEccCC-cCCCccc-c-ccCCCcccEEEecCC
Q psy3787 95 LINLAILDLSDN-ELTDVPC-E-LSSLFHLKSLFLGGN 129 (263)
Q Consensus 95 l~~L~~L~l~~n-~l~~l~~-~-~~~l~~L~~L~l~~n 129 (263)
+..|+.++.+++ .++..+- . ..+..+|+.+.+.++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c 330 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGC 330 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEecccc
Confidence 445566665554 3332221 1 235566777777666
No 78
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=85.68 E-value=0.59 Score=23.62 Aligned_cols=19 Identities=11% Similarity=0.340 Sum_probs=15.5
Q ss_pred cceeEEEeccCCcccccCcc
Q psy3787 208 QECTIEINIDKYKLDRTKTL 227 (263)
Q Consensus 208 ~~L~~~L~ls~n~l~~ip~~ 227 (263)
++|+. |++++|+|+.|...
T Consensus 2 ~~L~~-L~L~~NkI~~IEnL 20 (26)
T smart00365 2 TNLEE-LDLSQNKIKKIENL 20 (26)
T ss_pred CccCE-EECCCCccceecCc
Confidence 46898 99999999877654
No 79
>KOG4308|consensus
Probab=83.53 E-value=0.044 Score=49.14 Aligned_cols=15 Identities=33% Similarity=0.282 Sum_probs=8.2
Q ss_pred CcccEEEecCCCCCC
Q psy3787 119 FHLKSLFLGGNPIKT 133 (263)
Q Consensus 119 ~~L~~L~l~~n~l~~ 133 (263)
..++.+++..|.+++
T Consensus 262 ~~l~~l~l~~nsi~~ 276 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITE 276 (478)
T ss_pred hhhhhhhhhcCCccc
Confidence 445555555555554
No 80
>KOG0473|consensus
Probab=82.08 E-value=0.023 Score=45.43 Aligned_cols=86 Identities=19% Similarity=0.105 Sum_probs=71.2
Q ss_pred cCCCCCCcEEEecCCCCCCCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEE
Q psy3787 23 FIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAIL 101 (263)
Q Consensus 23 ~~~l~~L~~L~l~~n~l~~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L 101 (263)
+..+...+.||++.|++..+. .|+.+..+..++++.|.+...+.+ +.+...+..++..+|+.+..|.+....+.++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 777888999999999877554 466677788899999988877655 677788888999999999999999999999999
Q ss_pred EccCCcCC
Q psy3787 102 DLSDNELT 109 (263)
Q Consensus 102 ~l~~n~l~ 109 (263)
+...+.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 98888764
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=80.70 E-value=0.76 Score=22.40 Aligned_cols=14 Identities=0% Similarity=0.252 Sum_probs=10.1
Q ss_pred cceeEEEeccCCccc
Q psy3787 208 QECTIEINIDKYKLD 222 (263)
Q Consensus 208 ~~L~~~L~ls~n~l~ 222 (263)
++|+. |++++|+|+
T Consensus 2 ~~L~~-L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLET-LDLSNNQIT 15 (24)
T ss_dssp TT-SE-EE-TSSBEH
T ss_pred CCCCE-EEccCCcCC
Confidence 46998 999999876
No 82
>KOG3864|consensus
Probab=78.34 E-value=0.4 Score=37.62 Aligned_cols=80 Identities=24% Similarity=0.139 Sum_probs=48.8
Q ss_pred CCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCc-c--ccccccCCCCcCEEEccCC-cCCCcc-ccccCCCcccE
Q psy3787 49 KNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKIS-E--VSSNVGDLINLAILDLSDN-ELTDVP-CELSSLFHLKS 123 (263)
Q Consensus 49 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~-~--lp~~~~~l~~L~~L~l~~n-~l~~l~-~~~~~l~~L~~ 123 (263)
..++.++.++..|....-..+..++.++.+.+.+|+-- . +...-+-.++|+.|+++.| +|++.. ..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 35667777777776555555677777777777777422 1 1111124567888888866 566432 24667777777
Q ss_pred EEecC
Q psy3787 124 LFLGG 128 (263)
Q Consensus 124 L~l~~ 128 (263)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 76654
No 83
>KOG3864|consensus
Probab=77.63 E-value=0.37 Score=37.81 Aligned_cols=78 Identities=21% Similarity=0.167 Sum_probs=41.9
Q ss_pred CCcEEEecCCCCC--CCcCCCCCCCCcEEEecCCCCCC-Cchhhhh-CCCCccEEEeecC-cCcccc-ccccCCCCcCEE
Q psy3787 28 SLTELNLSYNQLT--MLPVCTDCKNLTHLLLGFNKINN-MENDYFL-TLTKLSLLNLKNN-KISEVS-SNVGDLINLAIL 101 (263)
Q Consensus 28 ~L~~L~l~~n~l~--~l~~~~~~~~L~~L~l~~n~~~~-~~~~~~~-~l~~L~~L~l~~~-~l~~lp-~~~~~l~~L~~L 101 (263)
.++.+|-+++.|. ++..+..++.++.|.+.++..-+ -.-+.++ ..++|+.|++++| +|++-- ..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4566666666655 23345566666666666664221 1111111 2357788888876 566332 234566666666
Q ss_pred EccC
Q psy3787 102 DLSD 105 (263)
Q Consensus 102 ~l~~ 105 (263)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6554
No 84
>KOG1947|consensus
Probab=76.68 E-value=0.72 Score=41.12 Aligned_cols=14 Identities=36% Similarity=0.382 Sum_probs=7.0
Q ss_pred cCCCCCCcEEEecC
Q psy3787 23 FIDMRSLTELNLSY 36 (263)
Q Consensus 23 ~~~l~~L~~L~l~~ 36 (263)
...+++|+.|++++
T Consensus 210 ~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 210 ALKCPNLEELDLSG 223 (482)
T ss_pred HhhCchhheecccC
Confidence 34445555555554
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=75.37 E-value=2 Score=21.93 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=12.0
Q ss_pred cceeEEEeccCCccc
Q psy3787 208 QECTIEINIDKYKLD 222 (263)
Q Consensus 208 ~~L~~~L~ls~n~l~ 222 (263)
++|+. |||++|.+.
T Consensus 2 ~~L~~-LdL~~N~i~ 15 (28)
T smart00368 2 PSLRE-LDLSNNKLG 15 (28)
T ss_pred CccCE-EECCCCCCC
Confidence 46998 999999886
No 86
>KOG3763|consensus
Probab=68.99 E-value=2.5 Score=38.20 Aligned_cols=67 Identities=13% Similarity=0.251 Sum_probs=42.9
Q ss_pred ccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCC--cccccCccccccccccccccccCCceEEec
Q psy3787 181 KLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKY--KLDRTKTLTLCKVINIPESVYMNRPFALTY 249 (263)
Q Consensus 181 ~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n--~l~~ip~~~~~~~~~l~~~~~~~~~~~~~~ 249 (263)
+.+.+..+.++ ++..+.. +.......++|+. |+|++| .+..-+.....+...+.++++.|||.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~-~sslsq~apklk~-L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDA-LSSLSQIAPKLKT-LDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhchhh-hhHHHHhcchhhe-eecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 34666777777 4444432 1222222346999 999999 566555544444566789999999977665
No 87
>KOG4341|consensus
Probab=66.76 E-value=2.5 Score=37.00 Aligned_cols=82 Identities=21% Similarity=0.146 Sum_probs=37.3
Q ss_pred CCCCCcEEEecCCCC-CCCc--C-CCCCCCCcEEEecCCC-CCCCchhhh-hCCCCccEEEeecCcCc---cccccccCC
Q psy3787 25 DMRSLTELNLSYNQL-TMLP--V-CTDCKNLTHLLLGFNK-INNMENDYF-LTLTKLSLLNLKNNKIS---EVSSNVGDL 95 (263)
Q Consensus 25 ~l~~L~~L~l~~n~l-~~l~--~-~~~~~~L~~L~l~~n~-~~~~~~~~~-~~l~~L~~L~l~~~~l~---~lp~~~~~l 95 (263)
++..|+.++.+++.- +..+ + ..+..+|+.+.++.++ ++......+ .+++.|+.+++.++... ++..--.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 455666666665532 2111 1 2344566666666553 222111111 23345666666555433 232223455
Q ss_pred CCcCEEEccCC
Q psy3787 96 INLAILDLSDN 106 (263)
Q Consensus 96 ~~L~~L~l~~n 106 (263)
+.|+.+.++++
T Consensus 372 ~~lr~lslshc 382 (483)
T KOG4341|consen 372 PRLRVLSLSHC 382 (483)
T ss_pred chhccCChhhh
Confidence 55666655544
No 88
>KOG3763|consensus
Probab=57.32 E-value=6.8 Score=35.59 Aligned_cols=35 Identities=29% Similarity=0.300 Sum_probs=17.9
Q ss_pred CCCCCcEEEecCCCCCCCcCC----CCCCCCcEEEecCC
Q psy3787 25 DMRSLTELNLSYNQLTMLPVC----TDCKNLTHLLLGFN 59 (263)
Q Consensus 25 ~l~~L~~L~l~~n~l~~l~~~----~~~~~L~~L~l~~n 59 (263)
+.+.+..+.+++|++..+..+ ...+.|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 345555555666655544422 23355555555555
No 89
>KOG1947|consensus
Probab=55.31 E-value=8.2 Score=34.32 Aligned_cols=109 Identities=27% Similarity=0.208 Sum_probs=71.2
Q ss_pred cCCCCCCcEEEecCCC-CCC--C-cCCCCCCCCcEEEecCC--CCCCC---chhhhhCCCCccEEEeecCc-Cccc--cc
Q psy3787 23 FIDMRSLTELNLSYNQ-LTM--L-PVCTDCKNLTHLLLGFN--KINNM---ENDYFLTLTKLSLLNLKNNK-ISEV--SS 90 (263)
Q Consensus 23 ~~~l~~L~~L~l~~n~-l~~--l-~~~~~~~~L~~L~l~~n--~~~~~---~~~~~~~l~~L~~L~l~~~~-l~~l--p~ 90 (263)
...++.|+.+.+..+. +.. + +....++.|+.|+++++ .+... .......+.+++.++++++. ++.. ..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 3457888888888774 443 2 23566789999999873 11111 12234456789999999987 5533 22
Q ss_pred cccCCCCcCEEEccCCc-CCC--ccccccCCCcccEEEecCCCC
Q psy3787 91 NVGDLINLAILDLSDNE-LTD--VPCELSSLFHLKSLFLGGNPI 131 (263)
Q Consensus 91 ~~~~l~~L~~L~l~~n~-l~~--l~~~~~~l~~L~~L~l~~n~l 131 (263)
....+++|+.+.+.++. ++. +......++.|+.++++++..
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 22347789999977776 553 443456788899999998753
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=41.79 E-value=17 Score=17.85 Aligned_cols=11 Identities=45% Similarity=0.425 Sum_probs=5.1
Q ss_pred CCCcEEEecCC
Q psy3787 27 RSLTELNLSYN 37 (263)
Q Consensus 27 ~~L~~L~l~~n 37 (263)
++|+.|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=28.96 E-value=45 Score=36.73 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=22.0
Q ss_pred EecCCCCCCCcC--CCCCCCCcEEEecCCCCC
Q psy3787 33 NLSYNQLTMLPV--CTDCKNLTHLLLGFNKIN 62 (263)
Q Consensus 33 ~l~~n~l~~l~~--~~~~~~L~~L~l~~n~~~ 62 (263)
||++|+|+.++. |..+.+|+.|+|++|...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 467788887763 777778888888887654
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.13 E-value=49 Score=36.45 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=26.5
Q ss_pred EeecCccCCCCccccCCCCCCcEEEecCCCCC
Q psy3787 9 DLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT 40 (263)
Q Consensus 9 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 40 (263)
||++|+|.......|..+++|+.|+|++|++.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57899999833333999999999999999876
Done!