Query psy3787
Match_columns 263
No_of_seqs 165 out of 1767
Neff 9.9
Searched_HMMs 29240
Date Fri Aug 16 17:23:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3787.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3787hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 6.2E-24 2.1E-28 179.8 16.9 211 2-238 80-306 (328)
2 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-24 4.1E-29 183.0 11.1 236 3-249 50-307 (313)
3 3zyi_A Leucine-rich repeat-con 99.9 5.6E-24 1.9E-28 187.6 15.5 225 3-249 75-306 (452)
4 3zyj_A Leucine-rich repeat-con 99.9 4.8E-24 1.6E-28 187.4 14.5 225 3-249 64-295 (440)
5 1xku_A Decorin; proteoglycan, 99.9 2.6E-23 8.8E-28 176.0 17.5 221 4-247 53-307 (330)
6 3rgz_A Protein brassinosteroid 99.9 1.7E-23 5.8E-28 195.8 17.7 241 2-249 417-743 (768)
7 2ft3_A Biglycan; proteoglycan, 99.9 5.5E-23 1.9E-27 174.1 15.2 231 3-246 54-307 (332)
8 4fcg_A Uncharacterized protein 99.9 2.7E-23 9.3E-28 175.9 12.9 203 2-228 103-320 (328)
9 3o6n_A APL1; leucine-rich repe 99.9 1E-22 3.5E-27 176.1 16.7 67 173-247 285-353 (390)
10 2z62_A TOLL-like receptor 4, v 99.9 1.1E-22 3.7E-27 167.9 14.3 199 3-222 28-237 (276)
11 3oja_B Anopheles plasmodium-re 99.9 1.6E-22 5.5E-27 184.1 16.6 222 2-248 74-360 (597)
12 2id5_A Lingo-1, leucine rich r 99.9 1E-22 3.6E-27 180.5 14.9 151 3-154 32-186 (477)
13 2z80_A TOLL-like receptor 2, v 99.9 2.3E-23 8E-28 177.8 10.2 225 3-249 52-317 (353)
14 3rgz_A Protein brassinosteroid 99.9 1.2E-22 4.2E-27 189.9 15.8 240 2-249 393-720 (768)
15 2id5_A Lingo-1, leucine rich r 99.9 4.6E-22 1.6E-26 176.3 17.9 227 2-248 79-335 (477)
16 1ogq_A PGIP-2, polygalacturona 99.9 6.2E-23 2.1E-27 172.6 11.2 216 27-249 50-284 (313)
17 1ozn_A Reticulon 4 receptor; N 99.9 2.7E-22 9.2E-27 166.3 14.8 199 4-222 33-238 (285)
18 1ozn_A Reticulon 4 receptor; N 99.9 3.6E-22 1.2E-26 165.5 14.5 219 6-249 14-241 (285)
19 3v47_A TOLL-like receptor 5B a 99.9 2.1E-22 7.1E-27 177.3 13.5 70 175-249 339-411 (455)
20 2o6q_A Variable lymphocyte rec 99.9 1.8E-21 6E-26 160.2 17.9 194 4-222 17-218 (270)
21 3o6n_A APL1; leucine-rich repe 99.9 2.3E-22 7.9E-27 173.9 12.2 133 2-136 44-182 (390)
22 2z66_A Variable lymphocyte rec 99.9 1.4E-22 4.9E-27 169.5 10.3 222 3-248 28-263 (306)
23 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-22 3.9E-27 171.2 9.6 215 2-246 33-250 (317)
24 1p9a_G Platelet glycoprotein I 99.9 1.1E-21 3.6E-26 163.3 14.1 193 2-222 9-208 (290)
25 1xku_A Decorin; proteoglycan, 99.9 1.9E-21 6.6E-26 164.4 15.8 230 4-245 32-275 (330)
26 3zyj_A Leucine-rich repeat-con 99.9 1.1E-21 3.7E-26 172.4 14.6 201 1-222 86-292 (440)
27 4eco_A Uncharacterized protein 99.9 9.5E-23 3.3E-27 186.9 8.2 153 2-156 248-414 (636)
28 3oja_A Leucine-rich immune mol 99.9 3.7E-22 1.3E-26 177.5 11.5 214 3-246 34-250 (487)
29 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-21 3.9E-26 166.0 13.8 229 4-245 34-276 (332)
30 1h6u_A Internalin H; cell adhe 99.9 1.9E-21 6.6E-26 163.0 14.8 196 2-229 40-237 (308)
31 3zyi_A Leucine-rich repeat-con 99.9 1.9E-21 6.4E-26 171.4 14.8 201 1-222 97-303 (452)
32 3v47_A TOLL-like receptor 5B a 99.9 1E-21 3.5E-26 172.9 12.8 135 3-137 30-172 (455)
33 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.7E-21 1.9E-25 172.7 17.6 147 94-248 351-512 (562)
34 1p9a_G Platelet glycoprotein I 99.9 2.7E-21 9.2E-26 160.8 14.2 201 23-248 6-210 (290)
35 1wwl_A Monocyte differentiatio 99.9 2.4E-22 8.3E-27 168.8 7.9 216 5-245 65-308 (312)
36 3oja_B Anopheles plasmodium-re 99.9 9.4E-22 3.2E-26 179.1 12.2 134 2-137 50-189 (597)
37 2xwt_C Thyrotropin receptor; s 99.9 2.1E-21 7.2E-26 156.9 12.8 192 28-243 32-236 (239)
38 3t6q_A CD180 antigen; protein- 99.9 2.4E-21 8.1E-26 176.5 14.4 138 4-141 34-175 (606)
39 1ziw_A TOLL-like receptor 3; i 99.9 1.3E-21 4.3E-26 180.6 12.3 226 5-250 383-626 (680)
40 2z66_A Variable lymphocyte rec 99.9 2.9E-21 9.8E-26 161.6 13.1 217 6-245 10-235 (306)
41 4fmz_A Internalin; leucine ric 99.9 1.7E-20 5.8E-25 159.5 18.0 128 3-135 66-193 (347)
42 4fmz_A Internalin; leucine ric 99.9 2.1E-20 7E-25 159.0 18.0 226 2-244 109-344 (347)
43 2z80_A TOLL-like receptor 2, v 99.9 1.4E-21 4.6E-26 166.9 10.7 218 1-223 74-315 (353)
44 4eco_A Uncharacterized protein 99.9 9.1E-22 3.1E-26 180.4 10.1 218 4-247 354-601 (636)
45 3rfs_A Internalin B, repeat mo 99.9 1.5E-20 5.1E-25 154.9 15.9 151 2-155 40-192 (272)
46 2o6q_A Variable lymphocyte rec 99.9 3.5E-20 1.2E-24 152.5 17.9 172 3-191 37-213 (270)
47 4ecn_A Leucine-rich repeat pro 99.9 9.3E-21 3.2E-25 178.1 16.3 151 2-156 547-709 (876)
48 3t6q_A CD180 antigen; protein- 99.9 5.6E-21 1.9E-25 174.0 14.3 242 2-249 300-563 (606)
49 1wwl_A Monocyte differentiatio 99.8 2.5E-21 8.6E-26 162.6 10.6 197 2-223 94-310 (312)
50 4ecn_A Leucine-rich repeat pro 99.8 1E-20 3.5E-25 177.8 15.9 209 2-230 594-848 (876)
51 2z7x_B TOLL-like receptor 1, v 99.8 1.7E-20 6E-25 167.8 16.2 149 93-249 321-484 (520)
52 1ziw_A TOLL-like receptor 3; i 99.8 1.7E-20 5.9E-25 173.0 16.6 237 3-243 25-306 (680)
53 1o6v_A Internalin A; bacterial 99.8 8.2E-20 2.8E-24 161.5 18.7 209 2-244 176-386 (466)
54 3vq2_A TLR4, TOLL-like recepto 99.8 1.1E-20 3.8E-25 172.1 12.7 236 4-249 308-561 (606)
55 1h6u_A Internalin H; cell adhe 99.8 3.7E-20 1.3E-24 155.2 14.2 196 20-247 34-231 (308)
56 2z63_A TOLL-like receptor 4, v 99.8 2.7E-20 9.3E-25 168.1 14.3 137 3-139 28-169 (570)
57 3bz5_A Internalin-J, INLJ; leu 99.8 5.8E-20 2E-24 162.1 15.9 215 2-244 41-275 (457)
58 2z63_A TOLL-like receptor 4, v 99.8 3.3E-20 1.1E-24 167.5 13.7 224 2-249 281-534 (570)
59 3bz5_A Internalin-J, INLJ; leu 99.8 1.5E-19 5.1E-24 159.5 17.1 223 2-249 63-302 (457)
60 1o6v_A Internalin A; bacterial 99.8 1.7E-19 5.8E-24 159.5 17.4 225 2-244 67-320 (466)
61 2z7x_B TOLL-like receptor 1, v 99.8 6.9E-20 2.4E-24 163.9 14.6 67 173-244 338-410 (520)
62 3j0a_A TOLL-like receptor 5; m 99.8 4.8E-20 1.6E-24 174.1 13.5 109 3-111 266-377 (844)
63 3vq2_A TLR4, TOLL-like recepto 99.8 2.7E-20 9.4E-25 169.5 11.4 234 2-245 284-533 (606)
64 3j0a_A TOLL-like receptor 5; m 99.8 1.3E-19 4.3E-24 171.2 15.5 136 2-137 23-166 (844)
65 3rfs_A Internalin B, repeat mo 99.8 8.2E-20 2.8E-24 150.4 12.5 191 10-225 26-222 (272)
66 3o53_A Protein LRIM1, AGAP0063 99.8 3.3E-21 1.1E-25 162.3 3.1 190 1-222 56-250 (317)
67 2z81_A CD282 antigen, TOLL-lik 99.8 2E-19 6.7E-24 161.9 14.0 194 27-249 310-513 (549)
68 3m19_A Variable lymphocyte rec 99.8 7.7E-19 2.6E-23 142.9 16.1 129 4-136 15-148 (251)
69 3g06_A SSPH2 (leucine-rich rep 99.8 5.6E-19 1.9E-23 160.8 16.4 212 4-246 62-297 (622)
70 4glp_A Monocyte differentiatio 99.8 6.5E-20 2.2E-24 153.8 9.5 217 5-245 66-306 (310)
71 4glp_A Monocyte differentiatio 99.8 3E-20 1E-24 155.8 7.2 196 3-222 91-307 (310)
72 2z62_A TOLL-like receptor 4, v 99.8 2.1E-19 7.3E-24 148.1 12.0 175 2-194 51-237 (276)
73 4ay9_X Follicle-stimulating ho 99.8 2.4E-19 8.1E-24 152.9 12.4 205 6-234 12-227 (350)
74 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 5.3E-19 1.8E-23 159.8 15.2 103 4-109 53-159 (562)
75 2xwt_C Thyrotropin receptor; s 99.8 5.7E-19 1.9E-23 142.5 13.9 189 32-246 16-218 (239)
76 3oja_A Leucine-rich immune mol 99.8 1.1E-20 3.7E-25 168.1 3.9 190 1-222 56-250 (487)
77 1h6t_A Internalin B; cell adhe 99.8 4.1E-19 1.4E-23 147.7 12.8 176 23-228 42-219 (291)
78 2z81_A CD282 antigen, TOLL-lik 99.8 3.7E-19 1.3E-23 160.1 11.2 130 4-133 27-162 (549)
79 3cvr_A Invasion plasmid antige 99.8 9.2E-19 3.1E-23 157.7 13.7 178 4-226 60-247 (571)
80 3m19_A Variable lymphocyte rec 99.8 2E-18 6.7E-23 140.5 13.8 135 3-137 35-173 (251)
81 1jl5_A Outer protein YOPM; leu 99.8 4.3E-18 1.5E-22 150.0 16.3 182 3-226 91-274 (454)
82 3g06_A SSPH2 (leucine-rich rep 99.8 6.4E-18 2.2E-22 153.9 14.9 189 2-227 80-302 (622)
83 1jl5_A Outer protein YOPM; leu 99.8 1.1E-17 3.8E-22 147.4 16.0 124 3-136 131-254 (454)
84 1xeu_A Internalin C; cellular 99.8 6.2E-19 2.1E-23 144.5 7.3 124 5-135 21-144 (263)
85 1h6t_A Internalin B; cell adhe 99.8 5.3E-18 1.8E-22 140.9 12.5 171 2-198 45-217 (291)
86 1m9s_A Internalin B; cell inva 99.8 3.8E-18 1.3E-22 155.0 12.0 180 20-229 36-217 (605)
87 4g8a_A TOLL-like receptor 4; l 99.8 9.7E-18 3.3E-22 152.8 14.6 138 3-140 52-194 (635)
88 2xot_A Amphoterin-induced prot 99.7 1.5E-17 5E-22 142.4 13.9 157 3-159 39-204 (361)
89 4ezg_A Putative uncharacterize 99.7 1.3E-17 4.3E-22 130.8 12.0 109 24-134 41-152 (197)
90 2xot_A Amphoterin-induced prot 99.7 1.2E-17 4.2E-22 142.9 12.7 173 6-221 21-201 (361)
91 3e6j_A Variable lymphocyte rec 99.7 3.2E-17 1.1E-21 131.5 14.1 131 3-133 40-173 (229)
92 2o6s_A Variable lymphocyte rec 99.7 5.4E-17 1.9E-21 128.1 14.4 145 7-155 11-159 (208)
93 2ell_A Acidic leucine-rich nuc 99.7 1.7E-17 5.9E-22 126.5 10.9 136 2-137 23-165 (168)
94 2o6s_A Variable lymphocyte rec 99.7 4.9E-17 1.7E-21 128.4 12.5 131 3-133 28-162 (208)
95 4ay9_X Follicle-stimulating ho 99.7 1.5E-17 5.1E-22 141.8 9.8 197 3-226 30-241 (350)
96 3e6j_A Variable lymphocyte rec 99.7 6.3E-17 2.2E-21 129.8 12.6 128 6-137 22-153 (229)
97 3goz_A Leucine-rich repeat-con 99.7 2.1E-18 7.3E-23 147.6 3.9 210 3-224 22-268 (362)
98 2ast_B S-phase kinase-associat 99.7 5.9E-18 2E-22 143.1 6.4 218 3-244 70-304 (336)
99 4g8a_A TOLL-like receptor 4; l 99.7 3.9E-17 1.3E-21 148.8 12.2 144 7-156 35-185 (635)
100 3cvr_A Invasion plasmid antige 99.7 9.3E-17 3.2E-21 144.7 14.1 178 28-246 60-243 (571)
101 2ca6_A RAN GTPase-activating p 99.7 2.1E-18 7.1E-23 148.9 3.1 230 2-245 31-315 (386)
102 1m9s_A Internalin B; cell inva 99.7 4.2E-17 1.4E-21 148.2 11.7 171 2-198 42-214 (605)
103 2v9t_B SLIT homolog 2 protein 99.7 6.9E-17 2.3E-21 128.8 11.2 146 6-156 14-164 (220)
104 4ezg_A Putative uncharacterize 99.7 1.5E-16 5E-21 124.6 12.8 149 2-156 43-193 (197)
105 2v70_A SLIT-2, SLIT homolog 2 99.7 1.8E-16 6.1E-21 126.4 12.1 147 7-158 15-167 (220)
106 2v70_A SLIT-2, SLIT homolog 2 99.7 1.5E-16 5.1E-21 126.9 11.1 130 4-133 33-167 (220)
107 1xeu_A Internalin C; cellular 99.7 3.2E-16 1.1E-20 128.3 12.9 126 2-134 40-165 (263)
108 2v9t_B SLIT homolog 2 protein 99.7 3E-16 1E-20 125.1 12.1 131 3-133 32-166 (220)
109 1a9n_A U2A', U2A'; complex (nu 99.7 9.1E-17 3.1E-21 123.6 7.1 128 2-131 18-152 (176)
110 2je0_A Acidic leucine-rich nuc 99.7 2.3E-16 7.9E-21 117.9 8.7 125 3-127 17-148 (149)
111 4b8c_D Glucose-repressible alc 99.7 2.3E-16 7.8E-21 146.5 9.6 118 23-141 220-338 (727)
112 2ca6_A RAN GTPase-activating p 99.7 3.3E-17 1.1E-21 141.3 3.5 207 2-225 59-319 (386)
113 3goz_A Leucine-rich repeat-con 99.6 1E-16 3.5E-21 137.2 5.6 204 7-226 2-242 (362)
114 1w8a_A SLIT protein; signaling 99.6 3.8E-15 1.3E-19 116.2 12.2 124 6-133 11-140 (192)
115 2ast_B S-phase kinase-associat 99.6 2.8E-16 9.7E-21 132.7 5.3 218 5-243 49-282 (336)
116 1z7x_W Ribonuclease inhibitor; 99.6 7.1E-17 2.4E-21 142.1 0.3 208 24-244 167-409 (461)
117 2wfh_A SLIT homolog 2 protein 99.6 1.1E-14 3.9E-19 113.6 11.9 124 6-133 13-140 (193)
118 2ell_A Acidic leucine-rich nuc 99.6 1.1E-14 3.7E-19 110.9 10.9 110 25-136 22-137 (168)
119 2o6r_A Variable lymphocyte rec 99.6 4.9E-14 1.7E-18 108.2 14.0 130 5-137 9-142 (177)
120 1z7x_W Ribonuclease inhibitor; 99.6 1.7E-16 6E-21 139.6 -0.3 133 2-134 27-185 (461)
121 1a9n_A U2A', U2A'; complex (nu 99.6 6.2E-15 2.1E-19 113.2 7.3 116 20-137 12-131 (176)
122 3sb4_A Hypothetical leucine ri 99.6 7.4E-15 2.5E-19 124.0 8.3 100 118-238 225-326 (329)
123 2je0_A Acidic leucine-rich nuc 99.5 1.9E-14 6.5E-19 107.4 7.3 110 25-136 15-130 (149)
124 2wfh_A SLIT homolog 2 protein 99.5 2.9E-13 9.9E-18 105.5 11.0 105 3-109 31-139 (193)
125 4b8c_D Glucose-repressible alc 99.5 1.1E-14 3.9E-19 135.1 2.9 91 45-136 220-310 (727)
126 1dce_A Protein (RAB geranylger 99.5 1.7E-13 5.8E-18 123.7 10.4 109 28-138 442-552 (567)
127 1w8a_A SLIT protein; signaling 99.5 2.1E-13 7.3E-18 106.2 9.1 108 29-137 10-120 (192)
128 1dce_A Protein (RAB geranylger 99.5 1.4E-13 4.9E-18 124.2 8.9 102 50-156 442-545 (567)
129 2o6r_A Variable lymphocyte rec 99.4 9.7E-13 3.3E-17 100.9 12.2 108 3-110 28-138 (177)
130 2r9u_A Variable lymphocyte rec 99.4 1.4E-12 4.9E-17 99.8 12.0 109 29-139 14-125 (174)
131 3g39_A Variable lymphocyte rec 99.4 2.1E-12 7.1E-17 98.5 12.0 109 28-137 10-120 (170)
132 2r9u_A Variable lymphocyte rec 99.4 4E-12 1.4E-16 97.3 11.8 104 6-113 15-122 (174)
133 3g39_A Variable lymphocyte rec 99.4 3.3E-12 1.1E-16 97.4 10.9 102 5-110 11-116 (170)
134 1ds9_A Outer arm dynein; leuci 99.4 7.5E-15 2.6E-19 115.0 -5.6 129 4-134 19-155 (198)
135 1ds9_A Outer arm dynein; leuci 99.3 1.8E-14 6.1E-19 112.8 -4.8 126 2-133 47-186 (198)
136 3sb4_A Hypothetical leucine ri 99.3 9.7E-13 3.3E-17 110.9 2.8 173 48-244 100-308 (329)
137 3un9_A NLR family member X1; l 99.2 7.2E-13 2.5E-17 113.6 -0.7 131 3-133 72-225 (372)
138 4fdw_A Leucine rich hypothetic 99.2 6.7E-11 2.3E-15 102.4 11.6 46 179-229 319-365 (401)
139 4fdw_A Leucine rich hypothetic 99.2 1.8E-10 6.2E-15 99.6 11.5 61 178-244 295-356 (401)
140 2ifg_A High affinity nerve gro 99.2 1.4E-10 4.7E-15 98.3 10.6 103 31-133 12-117 (347)
141 3ogk_B Coronatine-insensitive 99.2 1.6E-11 5.5E-16 111.2 4.6 130 3-133 164-307 (592)
142 2ifg_A High affinity nerve gro 99.2 1.2E-10 4E-15 98.7 9.6 101 7-109 12-116 (347)
143 3ogk_B Coronatine-insensitive 99.2 1.8E-11 6.3E-16 110.8 4.8 129 2-133 219-392 (592)
144 2p1m_B Transport inhibitor res 99.0 4.7E-12 1.6E-16 114.6 -3.9 128 2-129 65-221 (594)
145 2p1m_B Transport inhibitor res 99.0 1.5E-11 5.1E-16 111.4 -1.7 40 180-222 478-519 (594)
146 3un9_A NLR family member X1; l 99.0 2.2E-11 7.4E-16 104.4 -1.2 137 3-139 101-259 (372)
147 2ra8_A Uncharacterized protein 98.6 2.2E-07 7.4E-12 79.1 9.1 127 4-133 108-266 (362)
148 1io0_A Tropomodulin; LRR prote 98.5 5.2E-08 1.8E-12 75.0 3.0 111 23-133 32-165 (185)
149 1io0_A Tropomodulin; LRR prote 98.4 4.5E-08 1.5E-12 75.4 0.8 108 2-109 35-164 (185)
150 2ra8_A Uncharacterized protein 98.2 6.1E-07 2.1E-11 76.4 4.2 153 2-155 138-318 (362)
151 4fs7_A Uncharacterized protein 98.1 4.9E-06 1.7E-10 71.5 7.8 57 179-240 316-373 (394)
152 3e4g_A ATP synthase subunit S, 98.1 1.2E-06 4.1E-11 66.4 2.9 85 26-110 60-154 (176)
153 3rw6_A Nuclear RNA export fact 98.1 3.3E-06 1.1E-10 68.5 5.3 79 24-103 167-258 (267)
154 4fs7_A Uncharacterized protein 98.1 2.2E-05 7.4E-10 67.4 10.6 191 2-219 161-376 (394)
155 4gt6_A Cell surface protein; l 98.0 3.6E-05 1.2E-09 66.0 11.4 61 179-244 307-368 (394)
156 4gt6_A Cell surface protein; l 98.0 2.1E-05 7.3E-10 67.5 9.9 57 179-240 284-341 (394)
157 3rw6_A Nuclear RNA export fact 97.9 1.7E-05 5.8E-10 64.4 5.5 100 25-125 139-257 (267)
158 3e4g_A ATP synthase subunit S, 97.8 2.2E-05 7.6E-10 59.4 4.6 87 47-133 59-154 (176)
159 4h09_A Hypothetical leucine ri 97.7 0.00018 6.2E-09 61.2 9.5 81 45-127 236-318 (379)
160 4h09_A Hypothetical leucine ri 97.5 0.0015 5E-08 55.5 12.7 159 23-229 190-352 (379)
161 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00029 9.8E-09 54.3 4.6 108 23-130 37-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 0.0004 1.4E-08 53.5 5.4 65 70-134 38-113 (197)
163 3rfe_A Platelet glycoprotein I 96.9 0.0026 8.8E-08 45.5 6.5 56 30-86 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.8 0.0022 7.6E-08 45.9 5.6 55 76-132 11-68 (130)
165 2lz0_A Uncharacterized protein 52.9 18 0.00063 23.8 4.1 44 61-105 8-52 (100)
166 2lz0_A Uncharacterized protein 45.0 63 0.0021 21.1 6.1 36 23-59 16-53 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=6.2e-24 Score=179.81 Aligned_cols=211 Identities=17% Similarity=0.182 Sum_probs=174.6
Q ss_pred CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcC-CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN 79 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 79 (263)
.++++.|++++|.+.. +|. +.++++|++|++++|.++.+|. +..+++|++|++++|.+..++. .+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ--FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPA-SIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSS--CCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCG-GGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchh--cChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcH-HHhcCcCCCEEE
Confidence 3679999999999986 776 8889999999999999998884 8899999999999999997654 588999999999
Q ss_pred eecCcC-ccccccccC---------CCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhh
Q psy3787 80 LKNNKI-SEVSSNVGD---------LINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHI 149 (263)
Q Consensus 80 l~~~~l-~~lp~~~~~---------l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l 149 (263)
+++|++ ..+|..+.. +++|++|++++|.++.+|..++.+++|+.|++++|.+++++..+... ..++.+
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l--~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHL--PKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGC--TTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccC--CCCCEE
Confidence 999755 477876654 99999999999999999989999999999999999999998764333 467788
Q ss_pred hCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc---cccccChhHHhhcCCccceeEEEeccCCccc-ccC
Q psy3787 150 KTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC---KVINIPESVYMRGMSSQECTIEINIDKYKLD-RTK 225 (263)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~---~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~-~ip 225 (263)
+++.+.+ .+.+|..+..+++|++|+++ ..+.+|.++..+. +|+. |++++|.+. .+|
T Consensus 235 ~Ls~n~~---------------~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~----~L~~-L~L~~n~~~~~iP 294 (328)
T 4fcg_A 235 DLRGCTA---------------LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT----QLEK-LDLRGCVNLSRLP 294 (328)
T ss_dssp ECTTCTT---------------CCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT----TCCE-EECTTCTTCCCCC
T ss_pred ECcCCcc---------------hhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC----CCCE-EeCCCCCchhhcc
Confidence 8877664 56677789999999999999 4578888876655 5999 999998866 677
Q ss_pred ccccccccccccc
Q psy3787 226 TLTLCKVINIPES 238 (263)
Q Consensus 226 ~~~~~~~~~l~~~ 238 (263)
.. ..++.++..+
T Consensus 295 ~~-l~~L~~L~~l 306 (328)
T 4fcg_A 295 SL-IAQLPANCII 306 (328)
T ss_dssp GG-GGGSCTTCEE
T ss_pred HH-HhhccCceEE
Confidence 53 3333443333
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=1.2e-24 Score=183.01 Aligned_cols=236 Identities=15% Similarity=0.157 Sum_probs=161.6
Q ss_pred CCCCEEEeecCccCC--CCccccCCCCCCcEEEecC-CCCC-CCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccE
Q psy3787 3 SHLKTLDLSHNKLVS--DSLPLFIDMRSLTELNLSY-NQLT-MLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSL 77 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~-n~l~-~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 77 (263)
.+++.|++++|.+.+ ...+.+.++++|++|++++ |.+. .+| .+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467778888887764 2233377788888888884 6665 444 4777788888888888877555666777888888
Q ss_pred EEeecCcCc-cccccccCCCCcCEEEccCCcCC-CccccccCCC-cccEEEecCCCCCC-cchHHHHhHHHHhhhhhCCC
Q psy3787 78 LNLKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVPCELSSLF-HLKSLFLGGNPIKT-VRNDILQDSKRIISHIKTSR 153 (263)
Q Consensus 78 L~l~~~~l~-~lp~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~-~L~~L~l~~n~l~~-~~~~~~~~~~~~l~~l~~~~ 153 (263)
|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.++ .|+.|++++|.+++ +|..+.... ++.++++.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~---L~~L~Ls~ 206 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN---LAFVDLSR 206 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC---CSEEECCS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc---ccEEECcC
Confidence 888888877 66777777888888888888777 5677777776 78888888887775 443332221 55566655
Q ss_pred Ccccccc---------cCCCCCCCcCCcccccccccccCCcceeccc--ccc-ccChhHHhhcCCccceeEEEeccCCcc
Q psy3787 154 LDYHCQN---------VDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVI-NIPESVYMRGMSSQECTIEINIDKYKL 221 (263)
Q Consensus 154 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~-~l~~~~~~~~~~~~~L~~~L~ls~n~l 221 (263)
+.+.-.. +..-...... ....++.+..+++|++|+++ .++ .+|..+..+. +|+. |++++|++
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~----~L~~-L~Ls~N~l 280 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK----FLHS-LNVSFNNL 280 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCT----TCCE-EECCSSEE
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCc-eeeecCcccccCCCCEEECcCCcccCcCChHHhcCc----CCCE-EECcCCcc
Confidence 5431000 0000000000 22334447778999999999 775 7787776655 4999 99999999
Q ss_pred c-ccCccccccccccccccccCCceEEec
Q psy3787 222 D-RTKTLTLCKVINIPESVYMNRPFALTY 249 (263)
Q Consensus 222 ~-~ip~~~~~~~~~l~~~~~~~~~~~~~~ 249 (263)
+ .+|.. ..+.++..+.+.+||.++..
T Consensus 281 ~~~ip~~--~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 281 CGEIPQG--GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp EEECCCS--TTGGGSCGGGTCSSSEEEST
T ss_pred cccCCCC--ccccccChHHhcCCCCccCC
Confidence 8 77775 45788889999999988764
No 3
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=5.6e-24 Score=187.58 Aligned_cols=225 Identities=21% Similarity=0.207 Sum_probs=187.5
Q ss_pred CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
++++.|++++|++.......|.++++|+.|++++|.++.++ .+..+++|++|++++|.+..+++..|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 46899999999998833344999999999999999999765 5888999999999999999999888999999999999
Q ss_pred ecCcCccccc-cccCCCCcCEEEccC-CcCCCccc-cccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccc
Q psy3787 81 KNNKISEVSS-NVGDLINLAILDLSD-NELTDVPC-ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYH 157 (263)
Q Consensus 81 ~~~~l~~lp~-~~~~l~~L~~L~l~~-n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 157 (263)
++|+++.+|. .+..+++|+.|++++ +.+..++. .+..+++|+.|++++|.++++|. ... ...++.|+++.+.+
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~--l~~L~~L~Ls~N~l- 230 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTP--LVGLEELEMSGNHF- 230 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTT--CTTCCEEECTTSCC-
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccc--cccccEEECcCCcC-
Confidence 9999998876 578999999999998 46667765 48899999999999999999863 111 34677788877774
Q ss_pred ccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccccccccc
Q psy3787 158 CQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINI 235 (263)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l 235 (263)
.+..+..+..+++|+.|+++ .++.++...+.. +++|+. |++++|+++.+|...+..+.++
T Consensus 231 --------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~-L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 231 --------------PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG---LASLVE-LNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp --------------SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT---CTTCCE-EECCSSCCSCCCTTSSTTCTTC
T ss_pred --------------cccCcccccCccCCCEEEeCCCcCceECHHHhcC---CCCCCE-EECCCCcCCccChHHhccccCC
Confidence 34446678999999999999 787776654443 337999 9999999999998888778889
Q ss_pred ccccccCCceEEec
Q psy3787 236 PESVYMNRPFALTY 249 (263)
Q Consensus 236 ~~~~~~~~~~~~~~ 249 (263)
..+.+.+||+.+..
T Consensus 293 ~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 293 VELHLHHNPWNCDC 306 (452)
T ss_dssp CEEECCSSCEECST
T ss_pred CEEEccCCCcCCCC
Confidence 99999999987654
No 4
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=4.8e-24 Score=187.37 Aligned_cols=225 Identities=20% Similarity=0.223 Sum_probs=186.6
Q ss_pred CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
++++.|++++|++.......|.++++|+.|++++|.++.++ .+..+++|++|++++|.++.+++..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 46899999999998843344999999999999999999765 5888999999999999999999888999999999999
Q ss_pred ecCcCccccc-cccCCCCcCEEEccCC-cCCCccc-cccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccc
Q psy3787 81 KNNKISEVSS-NVGDLINLAILDLSDN-ELTDVPC-ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYH 157 (263)
Q Consensus 81 ~~~~l~~lp~-~~~~l~~L~~L~l~~n-~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 157 (263)
++|.++.++. .+..+++|++|++++| .+..++. .+..+++|+.|++++|.++.+|. ... ...|+.|+++.+.+
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~--l~~L~~L~Ls~N~l- 219 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTP--LIKLDELDLSGNHL- 219 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTT--CSSCCEEECTTSCC-
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCC--CcccCEEECCCCcc-
Confidence 9999998866 5788999999999984 5666655 58899999999999999999874 111 34677777877763
Q ss_pred ccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccccccccc
Q psy3787 158 CQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINI 235 (263)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l 235 (263)
....+..+..+++|+.|+++ .++.++...+.. +++|+. |++++|+++.+|...+..+.++
T Consensus 220 --------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~-L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 220 --------------SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN---LQSLVE-INLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp --------------CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT---CTTCCE-EECTTSCCCCCCTTTTSSCTTC
T ss_pred --------------CccChhhhccCccCCEEECCCCceeEEChhhhcC---CCCCCE-EECCCCCCCccChhHhccccCC
Confidence 33345678899999999999 888777655543 347999 9999999999998888778889
Q ss_pred ccccccCCceEEec
Q psy3787 236 PESVYMNRPFALTY 249 (263)
Q Consensus 236 ~~~~~~~~~~~~~~ 249 (263)
..+.+.+||+.+..
T Consensus 282 ~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 282 ERIHLHHNPWNCNC 295 (440)
T ss_dssp CEEECCSSCEECSS
T ss_pred CEEEcCCCCccCCC
Confidence 99999999987643
No 5
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=2.6e-23 Score=175.96 Aligned_cols=221 Identities=18% Similarity=0.275 Sum_probs=126.1
Q ss_pred CCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCC-c-CCCCCCCCcEEEecCCCCCCCc----------------
Q psy3787 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTML-P-VCTDCKNLTHLLLGFNKINNME---------------- 65 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~-~~~~~~~L~~L~l~~n~~~~~~---------------- 65 (263)
+++.|++++|+++......+.++++|++|++++|.++.+ | .+..+++|++|++++|.++.++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~ 132 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENE 132 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCc
Confidence 456666666666552222266666666666666666544 2 3555566666666666555443
Q ss_pred -----hhhhhCCCCccEEEeecCcCc---cccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchH
Q psy3787 66 -----NDYFLTLTKLSLLNLKNNKIS---EVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRND 137 (263)
Q Consensus 66 -----~~~~~~l~~L~~L~l~~~~l~---~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~ 137 (263)
+..+..+++|++|++++|.++ ..+..+..+++|+++++++|.++.+|..+. ++|+.|++++|.++++++.
T Consensus 133 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~ 210 (330)
T 1xku_A 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAA 210 (330)
T ss_dssp CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTG
T ss_pred ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHH
Confidence 334444444444444444443 123334444445555555554444443322 4455555555555544332
Q ss_pred HHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEe
Q psy3787 138 ILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEIN 215 (263)
Q Consensus 138 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ 215 (263)
.+.. ...++.++++.+.+ .+..+..+..+++|++|+++ .++.+|.++.... +|+. |+
T Consensus 211 ~~~~-l~~L~~L~Ls~n~l---------------~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~----~L~~-L~ 269 (330)
T 1xku_A 211 SLKG-LNNLAKLGLSFNSI---------------SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK----YIQV-VY 269 (330)
T ss_dssp GGTT-CTTCCEEECCSSCC---------------CEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCS----SCCE-EE
T ss_pred HhcC-CCCCCEEECCCCcC---------------ceeChhhccCCCCCCEEECCCCcCccCChhhccCC----CcCE-EE
Confidence 2221 12344444444432 22233467888999999999 8889988766554 5999 99
Q ss_pred ccCCcccccCccccccc------cccccccccCCceEE
Q psy3787 216 IDKYKLDRTKTLTLCKV------INIPESVYMNRPFAL 247 (263)
Q Consensus 216 ls~n~l~~ip~~~~~~~------~~l~~~~~~~~~~~~ 247 (263)
+++|+|+.+|...++.. ..+..+.+.+||...
T Consensus 270 l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 99999999988777643 445677888998543
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=1.7e-23 Score=195.76 Aligned_cols=241 Identities=24% Similarity=0.302 Sum_probs=161.9
Q ss_pred CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCC-CCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT-MLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN 79 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 79 (263)
+++|+.|++++|.+.+.....+.++++|+.|++++|.+. .+| .+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 496 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496 (768)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEE
Confidence 567888888888887632333788888888888888877 444 367778888888888888766666677788888888
Q ss_pred eecCcCc-cccccccCCCCcCEEEccCCcCC-CccccccCCCcccEEEecCCCCCC-cchHHHHhH--------------
Q psy3787 80 LKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVPCELSSLFHLKSLFLGGNPIKT-VRNDILQDS-------------- 142 (263)
Q Consensus 80 l~~~~l~-~lp~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~-------------- 142 (263)
+++|+++ .+|.+++.+++|++|++++|.+. .+|..++.+++|+.+++++|.+.+ +|..++...
T Consensus 497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~ 576 (768)
T 3rgz_A 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEE
T ss_pred ccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccc
Confidence 8888877 66777777888888888888777 567777778888888888887764 665544321
Q ss_pred ------------------------------------------------------HHHhhhhhCCCCccc---------cc
Q psy3787 143 ------------------------------------------------------KRIISHIKTSRLDYH---------CQ 159 (263)
Q Consensus 143 ------------------------------------------------------~~~l~~l~~~~~~~~---------~~ 159 (263)
...+..++++.+.+. +.
T Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 656 (768)
T 3rgz_A 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656 (768)
T ss_dssp EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT
T ss_pred ccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccc
Confidence 011222333333220 00
Q ss_pred ccCCCCCCCcCCcccccccccccCCcceeccc--ccc-ccChhHHhhcCCccceeEEEeccCCccc-ccCcccccccccc
Q psy3787 160 NVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVI-NIPESVYMRGMSSQECTIEINIDKYKLD-RTKTLTLCKVINI 235 (263)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~-~l~~~~~~~~~~~~~L~~~L~ls~n~l~-~ip~~~~~~~~~l 235 (263)
.+..-..+.....+.+|..++.+++|++||++ +++ .+|..+..+.. |+. |++++|+++ .||... ++..+
T Consensus 657 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~----L~~-L~ls~N~l~g~iP~~~--~~~~~ 729 (768)
T 3rgz_A 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM----LTE-IDLSNNNLSGPIPEMG--QFETF 729 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC----CSE-EECCSSEEEEECCSSS--SGGGS
T ss_pred cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC----CCE-EECcCCcccccCCCch--hhccC
Confidence 00000011111145677777788888888888 554 67766665544 888 888888887 677654 35778
Q ss_pred ccccccCCceEEec
Q psy3787 236 PESVYMNRPFALTY 249 (263)
Q Consensus 236 ~~~~~~~~~~~~~~ 249 (263)
+...|.|||.+|..
T Consensus 730 ~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 730 PPAKFLNNPGLCGY 743 (768)
T ss_dssp CGGGGCSCTEEEST
T ss_pred CHHHhcCCchhcCC
Confidence 88899999988864
No 7
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=5.5e-23 Score=174.09 Aligned_cols=231 Identities=16% Similarity=0.243 Sum_probs=144.2
Q ss_pred CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCC-c-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTML-P-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
++++.|++++|.+.......+.++++|++|++++|.++.+ | .+..+++|++|++++|.+..++...+ ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEEC
Confidence 4577777777777762222377777777777777777755 2 46777777777777777776655432 56777777
Q ss_pred ecCcCcccccc-ccCCCCcCEEEccCCcCCC---ccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcc
Q psy3787 81 KNNKISEVSSN-VGDLINLAILDLSDNELTD---VPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDY 156 (263)
Q Consensus 81 ~~~~l~~lp~~-~~~l~~L~~L~l~~n~l~~---l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~ 156 (263)
++|.++.++.. +..+++|++|++++|.++. .+..+..+ +|+.+++++|.++++|.... ..++.++++.+.+
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~----~~L~~L~l~~n~i 205 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP----ETLNELHLDHNKI 205 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC----SSCSCCBCCSSCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc----CCCCEEECCCCcC
Confidence 77777766543 5667777777777776652 23345555 66666666666666554332 1233444433332
Q ss_pred cc---------cccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccC
Q psy3787 157 HC---------QNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTK 225 (263)
Q Consensus 157 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip 225 (263)
.- ..+..-...........+..+..+++|++|+++ .++.+|..+..+. +|+. |++++|+++.+|
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~----~L~~-L~l~~N~l~~~~ 280 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLK----LLQV-VYLHTNNITKVG 280 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCT----TCCE-EECCSSCCCBCC
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCc----cCCE-EECCCCCCCccC
Confidence 10 000000000000022233457888999999999 8889988766554 5998 999999999888
Q ss_pred ccccccc------cccccccccCCceE
Q psy3787 226 TLTLCKV------INIPESVYMNRPFA 246 (263)
Q Consensus 226 ~~~~~~~------~~l~~~~~~~~~~~ 246 (263)
...++.. ..+..+.+.+||..
T Consensus 281 ~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 281 VNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp TTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred hhHccccccccccccccceEeecCccc
Confidence 7766542 44567788888854
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=2.7e-23 Score=175.86 Aligned_cols=203 Identities=19% Similarity=0.197 Sum_probs=169.0
Q ss_pred CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc-CCCCCCCCcEEEecCCCCCCCchhhhh---------
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNKINNMENDYFL--------- 70 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~--------- 70 (263)
+++|++|++++|.+.. +|. +.++++|++|++++|.++.+| .+..+++|++|++++|...+..+..+.
T Consensus 103 l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~ 180 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180 (328)
T ss_dssp GTTCSEEEEESSCCCC--CCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred CCCCCEEECCCCCccc--hhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence 6789999999999985 776 999999999999999999888 588999999999999876654444443
Q ss_pred CCCCccEEEeecCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCC-cchHHHHhHHHHhhhh
Q psy3787 71 TLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKT-VRNDILQDSKRIISHI 149 (263)
Q Consensus 71 ~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~l~~l 149 (263)
.+++|++|++++|+++.+|..+..+++|++|++++|.++.+|..++.+++|+.|++++|.+.+ +|...... ..++.+
T Consensus 181 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l--~~L~~L 258 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR--APLKRL 258 (328)
T ss_dssp ESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC--CCCCEE
T ss_pred cCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCC--CCCCEE
Confidence 489999999999999999999999999999999999999999889999999999999998777 55433222 367777
Q ss_pred hCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc---cccccChhHHhhcCCccceeEEEeccCCcccccCc
Q psy3787 150 KTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC---KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKT 226 (263)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~---~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~ 226 (263)
+++.+.+ .+.+|..+..+++|++|+++ .++.+|+++..+.. |+. +++..+.+..++.
T Consensus 259 ~L~~n~~---------------~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~----L~~-l~l~~~~~~~l~~ 318 (328)
T 4fcg_A 259 ILKDCSN---------------LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA----NCI-ILVPPHLQAQLDQ 318 (328)
T ss_dssp ECTTCTT---------------CCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT----TCE-EECCGGGSCC---
T ss_pred ECCCCCc---------------hhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC----ceE-EeCCHHHHHHHhh
Confidence 7766654 56778889999999999999 55899998887765 999 9999987776665
Q ss_pred cc
Q psy3787 227 LT 228 (263)
Q Consensus 227 ~~ 228 (263)
..
T Consensus 319 ~~ 320 (328)
T 4fcg_A 319 HR 320 (328)
T ss_dssp --
T ss_pred hh
Confidence 43
No 9
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=1e-22 Score=176.09 Aligned_cols=67 Identities=10% Similarity=0.087 Sum_probs=48.6
Q ss_pred ccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCCceEE
Q psy3787 173 SEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFAL 247 (263)
Q Consensus 173 ~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~ 247 (263)
..++..+..+++|++|+++ .++.+|..+..+.. |+. |++++|+++.+|... +.++..+.+.+||..+
T Consensus 285 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~----L~~-L~L~~N~i~~~~~~~---~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 285 VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR----LEN-LYLDHNSIVTLKLST---HHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTT----CSE-EECCSSCCCCCCCCT---TCCCSEEECCSSCEEH
T ss_pred cccCcccCCCCCCCEEECCCCcceecCccccccCc----CCE-EECCCCccceeCchh---hccCCEEEcCCCCccc
Confidence 3445555677888888888 77788877766554 888 888888888776433 4667778888888655
No 10
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=1.1e-22 Score=167.92 Aligned_cols=199 Identities=23% Similarity=0.269 Sum_probs=157.2
Q ss_pred CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
+++++|++++|+++......+.++++|++|++++|.+..++ .+..+++|++|++++|.+..+++..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35899999999998733334889999999999999998766 4888999999999999999888888899999999999
Q ss_pred ecCcCccccc-cccCCCCcCEEEccCCcCCC--ccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhh----hhhCCC
Q psy3787 81 KNNKISEVSS-NVGDLINLAILDLSDNELTD--VPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIIS----HIKTSR 153 (263)
Q Consensus 81 ~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~----~l~~~~ 153 (263)
++|.++.++. .+..+++|++|++++|.++. +|..++.+++|+.|++++|.+++++...+... ..+. .++++.
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDLSL 186 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH-HTCTTCCEEEECCS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh-hhccccceeeecCC
Confidence 9999997765 58889999999999999986 67789999999999999999999876544432 2233 445555
Q ss_pred CcccccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCccc
Q psy3787 154 LDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLD 222 (263)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~ 222 (263)
+. ...++.......+|++|+++ .++.+|.+.+... ++|+. |++++|+++
T Consensus 187 n~----------------l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~-L~l~~N~~~ 237 (276)
T 2z62_A 187 NP----------------MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRL---TSLQK-IWLHTNPWD 237 (276)
T ss_dssp SC----------------CCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTC---CSCCE-EECCSSCBC
T ss_pred Cc----------------ccccCccccCCCcccEEECCCCceeecCHhHhccc---ccccE-EEccCCccc
Confidence 54 34455555555688899988 7788887665433 36888 999999776
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.6e-22 Score=184.13 Aligned_cols=222 Identities=18% Similarity=0.214 Sum_probs=122.5
Q ss_pred CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN 79 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 79 (263)
+++|+.|++++|.+.......|..+++|++|++++|.++.++ .+..+++|++|++++|.+..+++..|..+++|++|+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 345566666666555521122555666666666666655544 245556666666666666655555555556666666
Q ss_pred eecCcCcccc-ccccCCCCcCEEEccCCcCCCccc---------------------------------------------
Q psy3787 80 LKNNKISEVS-SNVGDLINLAILDLSDNELTDVPC--------------------------------------------- 113 (263)
Q Consensus 80 l~~~~l~~lp-~~~~~l~~L~~L~l~~n~l~~l~~--------------------------------------------- 113 (263)
+++|.++.++ ..+..+++|++|++++|.++.++.
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~ 233 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 233 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSC
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCC
Confidence 6666555443 235555556666655555543321
Q ss_pred ---------------cccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCccccccc
Q psy3787 114 ---------------ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINID 178 (263)
Q Consensus 114 ---------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (263)
.++.+++|+.|++++|.++++++..+.. ...|..|+++.+. ...++..
T Consensus 234 L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~----------------l~~l~~~ 296 (597)
T 3oja_B 234 LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNR----------------LVALNLY 296 (597)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTT-CSSCCEEECTTSC----------------CCEEECS
T ss_pred CCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcC-ccCCCEEECCCCC----------------CCCCCcc
Confidence 1222223333333333333321111111 0122222222222 3445556
Q ss_pred ccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCCceEEe
Q psy3787 179 KYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFALT 248 (263)
Q Consensus 179 ~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~~ 248 (263)
+..+++|+.|+++ .++.+|.++..+.. |+. |++++|.++.+|... +.++..+.+.+||+.+.
T Consensus 297 ~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~----L~~-L~L~~N~l~~~~~~~---~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 297 GQPIPTLKVLDLSHNHLLHVERNQPQFDR----LEN-LYLDHNSIVTLKLST---HHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp SSCCTTCCEEECCSSCCCCCGGGHHHHTT----CSE-EECCSSCCCCCCCCT---TCCCSEEECCSSCEEHH
T ss_pred cccCCCCcEEECCCCCCCccCcccccCCC----CCE-EECCCCCCCCcChhh---cCCCCEEEeeCCCCCCh
Confidence 6678888888888 77888887766554 898 999999888777433 36677788888887643
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=1e-22 Score=180.46 Aligned_cols=151 Identities=25% Similarity=0.320 Sum_probs=110.8
Q ss_pred CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
++++.|++++|+++......|.++++|++|++++|.++.++ .+..+++|++|++++|.+..+++..|..+++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 46788888888887732233888888888888888887553 4778888888888888888887777778888888888
Q ss_pred ecCcCccc-cccccCCCCcCEEEccCCcCCCc-cccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCC
Q psy3787 81 KNNKISEV-SSNVGDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRL 154 (263)
Q Consensus 81 ~~~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~ 154 (263)
++|+++.+ +..+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+++++...+... ..++.+++..+
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n 186 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL-HGLIVLRLRHL 186 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC-TTCCEEEEESC
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhccc-CCCcEEeCCCC
Confidence 88888755 45677788888888888888765 4457788888888888888888776544332 34444444433
No 13
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=2.3e-23 Score=177.84 Aligned_cols=225 Identities=17% Similarity=0.224 Sum_probs=146.5
Q ss_pred CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
++|++|++++|+++......+.++++|++|++++|.++.++ .+..+++|++|++++|.++++++..+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 36778888888877622223778888888888888877654 3777788888888888888777777777888888888
Q ss_pred ecCcCccccc--cccCCCCcCEEEccCC-cCCCc-cccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcc
Q psy3787 81 KNNKISEVSS--NVGDLINLAILDLSDN-ELTDV-PCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDY 156 (263)
Q Consensus 81 ~~~~l~~lp~--~~~~l~~L~~L~l~~n-~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~ 156 (263)
++|+++.+|. .+..+++|++|++++| .+..+ +..++.+++|+.|++++|.++++.+..+.. ...+++++++.+.+
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~~n~l 210 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS-IQNVSHLILHMKQH 210 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT-CSEEEEEEEECSCS
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc-cccCCeecCCCCcc
Confidence 8888877765 5677778888888777 45555 345677777777777777777653332221 12344444433331
Q ss_pred cccccCCCCCCCcCCccccccc-ccccCCcceeccc--ccc--------------------------------ccChhHH
Q psy3787 157 HCQNVDGGGMSSQESTSEINID-KYKLDRTKTLTLC--KVI--------------------------------NIPESVY 201 (263)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~--~~~--------------------------------~l~~~~~ 201 (263)
..++.. +..+++|++|+++ .++ .+|..+.
T Consensus 211 ----------------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~ 274 (353)
T 2z80_A 211 ----------------ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274 (353)
T ss_dssp ----------------TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHH
T ss_pred ----------------ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHh
Confidence 111111 1223444444444 222 2344444
Q ss_pred hhcCCccceeEEEeccCCcccccCccccccccccccccccCCceEEec
Q psy3787 202 MRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFALTY 249 (263)
Q Consensus 202 ~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~~~ 249 (263)
.+ ++|+. |++++|+++.+|...+..+.++..+.+.+||..+..
T Consensus 275 ~l----~~L~~-L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 275 QI----SGLLE-LEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp TC----TTCCE-EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cc----cCCCE-EECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 33 35998 999999999888877666778888888888866543
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=1.2e-22 Score=189.91 Aligned_cols=240 Identities=20% Similarity=0.225 Sum_probs=186.3
Q ss_pred CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCC-CCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEE
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLT-MLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLL 78 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~-~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 78 (263)
+++|++|++++|.+.+. +|. +.++++|+.|++++|.++ .+| .+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 393 ~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGK-IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471 (768)
T ss_dssp TCCCCEEECCSSEEEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cCCccEEECCCCccccc-cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence 56899999999999863 444 999999999999999998 445 48889999999999999998778889999999999
Q ss_pred EeecCcCc-cccccccCCCCcCEEEccCCcCC-CccccccCCCcccEEEecCCCCCC-cchHHHHhHHHHhhhhhCCCCc
Q psy3787 79 NLKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVPCELSSLFHLKSLFLGGNPIKT-VRNDILQDSKRIISHIKTSRLD 155 (263)
Q Consensus 79 ~l~~~~l~-~lp~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~l~~l~~~~~~ 155 (263)
++++|+++ .+|..+..+++|++|++++|.++ .+|.+++.+++|+.|++++|.+++ +|..+.... .++.++++.+.
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~--~L~~L~Ls~N~ 549 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR--SLIWLDLNTNL 549 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT--TCCEEECCSSE
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC--CCCEEECCCCc
Confidence 99999999 77889999999999999999998 678889999999999999999996 676554443 67777777665
Q ss_pred ccccccC-------------------------------------------------------------------------
Q psy3787 156 YHCQNVD------------------------------------------------------------------------- 162 (263)
Q Consensus 156 ~~~~~~~------------------------------------------------------------------------- 162 (263)
+.+..-.
T Consensus 550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~ 629 (768)
T 3rgz_A 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629 (768)
T ss_dssp EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence 5311000
Q ss_pred ------CCCCCCcCCcccccccccccCCcceeccc--ccc-ccChhHHhhcCCccceeEEEeccCCcccccCcccccccc
Q psy3787 163 ------GGGMSSQESTSEINIDKYKLDRTKTLTLC--KVI-NIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVI 233 (263)
Q Consensus 163 ------~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~-~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~ 233 (263)
....+.....+.+|.+++.++.|+.|+++ .++ .+|..+..+.. |+. ||+++|+++...+..+..+.
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~----L~~-LdLs~N~l~g~ip~~l~~l~ 704 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG----LNI-LDLSSNKLDGRIPQAMSALT 704 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT----CCE-EECCSSCCEECCCGGGGGCC
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCC----CCE-EECCCCcccCcCChHHhCCC
Confidence 00001111134677778888888888888 664 77777766554 888 88888888843334555667
Q ss_pred ccccccccCCceEEec
Q psy3787 234 NIPESVYMNRPFALTY 249 (263)
Q Consensus 234 ~l~~~~~~~~~~~~~~ 249 (263)
.+..+.+++|+....+
T Consensus 705 ~L~~L~ls~N~l~g~i 720 (768)
T 3rgz_A 705 MLTEIDLSNNNLSGPI 720 (768)
T ss_dssp CCSEEECCSSEEEEEC
T ss_pred CCCEEECcCCcccccC
Confidence 7778888888765544
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=4.6e-22 Score=176.28 Aligned_cols=227 Identities=20% Similarity=0.263 Sum_probs=157.1
Q ss_pred CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN 79 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 79 (263)
+++|++|++++|++.......|.++++|++|++++|.+..++ .+..+++|++|++++|.+..+.+..|..+++|+.|+
T Consensus 79 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence 678888899888888722223788888888888888887543 467777888888888877777766677777777777
Q ss_pred eecCcCccccc-cccCCCCcCEEEccCCcCCCccc-cccCCCc------------------------ccEEEecCCCCCC
Q psy3787 80 LKNNKISEVSS-NVGDLINLAILDLSDNELTDVPC-ELSSLFH------------------------LKSLFLGGNPIKT 133 (263)
Q Consensus 80 l~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~------------------------L~~L~l~~n~l~~ 133 (263)
+++|+++.++. .+..+++|+.|++++|.+..++. .+..+++ |+.|++++|.++.
T Consensus 159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 238 (477)
T 2id5_A 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238 (477)
T ss_dssp EESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS
T ss_pred CCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc
Confidence 77777776654 35666777777777776665432 3445544 4455555555555
Q ss_pred cchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCcccee
Q psy3787 134 VRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECT 211 (263)
Q Consensus 134 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~ 211 (263)
++...+... ..|+.|+++.+.+ ....+..+..+++|++|+++ .++.++...+.. +++|+
T Consensus 239 ~~~~~~~~l-~~L~~L~Ls~n~l---------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~ 299 (477)
T 2id5_A 239 VPYLAVRHL-VYLRFLNLSYNPI---------------STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG---LNYLR 299 (477)
T ss_dssp CCHHHHTTC-TTCCEEECCSSCC---------------CEECTTSCTTCTTCCEEECCSSCCSEECTTTBTT---CTTCC
T ss_pred cCHHHhcCc-cccCeeECCCCcC---------------CccChhhccccccCCEEECCCCccceECHHHhcC---cccCC
Confidence 554433322 3455566655552 22233347788899999999 777665443332 33699
Q ss_pred EEEeccCCcccccCccccccccccccccccCCceEEe
Q psy3787 212 IEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFALT 248 (263)
Q Consensus 212 ~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~~ 248 (263)
. |++++|+++.+|...+..+.++..+.+.+||..+.
T Consensus 300 ~-L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 300 V-LNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp E-EECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred E-EECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 9 99999999999988777778888999999997754
No 16
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=6.2e-23 Score=172.55 Aligned_cols=216 Identities=17% Similarity=0.172 Sum_probs=160.7
Q ss_pred CCCcEEEecCCCCCC---Cc-CCCCCCCCcEEEecC-CCCCCCchhhhhCCCCccEEEeecCcCc-cccccccCCCCcCE
Q psy3787 27 RSLTELNLSYNQLTM---LP-VCTDCKNLTHLLLGF-NKINNMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAI 100 (263)
Q Consensus 27 ~~L~~L~l~~n~l~~---l~-~~~~~~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~ 100 (263)
.+++.|++++|.+.. +| .+..+++|++|++++ |.+.+..+..+..+++|++|++++|+++ .+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 689999999999985 55 588999999999995 8888777777999999999999999998 78999999999999
Q ss_pred EEccCCcCC-CccccccCCCcccEEEecCCCCCC-cchHHHHhHHHHhhhhhCCCCccccc---c-----cCCCCCCCcC
Q psy3787 101 LDLSDNELT-DVPCELSSLFHLKSLFLGGNPIKT-VRNDILQDSKRIISHIKTSRLDYHCQ---N-----VDGGGMSSQE 170 (263)
Q Consensus 101 L~l~~n~l~-~l~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~l~~l~~~~~~~~~~---~-----~~~~~~~~~~ 170 (263)
|++++|.+. .+|..++.+++|++|++++|.+++ +|..+.... ..++.++++.+.+.-. . +..-..+...
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS-KLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC-TTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh-hcCcEEECcCCeeeccCChHHhCCcccEEECcCCc
Confidence 999999998 678889999999999999999985 666544332 3567777776654200 0 0000011111
Q ss_pred CcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCccc-ccCccccccccccccccccCCceEE
Q psy3787 171 STSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLD-RTKTLTLCKVINIPESVYMNRPFAL 247 (263)
Q Consensus 171 ~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~-~ip~~~~~~~~~l~~~~~~~~~~~~ 247 (263)
..+..+..+..+++|+.|+++ .++..++.+.. +++|+. |++++|+++ .+|. .+..+.++..+.+.+|+...
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~----l~~L~~-L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL----SKNLNG-LDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCC----CTTCCE-EECCSSCCEECCCG-GGGGCTTCCEEECCSSEEEE
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCcccc----cCCCCE-EECcCCcccCcCCh-HHhcCcCCCEEECcCCcccc
Confidence 123455667788888888888 66544444332 346998 999999998 4543 45566777888888887654
Q ss_pred ec
Q psy3787 248 TY 249 (263)
Q Consensus 248 ~~ 249 (263)
.+
T Consensus 283 ~i 284 (313)
T 1ogq_A 283 EI 284 (313)
T ss_dssp EC
T ss_pred cC
Confidence 43
No 17
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=2.7e-22 Score=166.26 Aligned_cols=199 Identities=22% Similarity=0.235 Sum_probs=106.1
Q ss_pred CCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCC-CCCCchhhhhCCCCccEEEe
Q psy3787 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNK-INNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l 80 (263)
++++|++++|.++......+..+++|++|++++|.++.++ .+..+++|++|++++|. +..+.+..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 4566666666655521112556666666666666655442 35555666666666664 55555555555666666666
Q ss_pred ecCcCccc-cccccCCCCcCEEEccCCcCCCcccc-ccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccc
Q psy3787 81 KNNKISEV-SSNVGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHC 158 (263)
Q Consensus 81 ~~~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~ 158 (263)
++|+++.+ |..+..+++|++|++++|.++.++.. ++.+++|+.|++++|.+++++...+.. ...++.++++.+.+
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l-- 189 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG-LHSLDRLLLHQNRV-- 189 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCC--
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC-ccccCEEECCCCcc--
Confidence 66666544 33455566666666666666655432 555666666666666666555433222 12344455544442
Q ss_pred cccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCccc
Q psy3787 159 QNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLD 222 (263)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~ 222 (263)
.+..+..+..+++|++|+++ .++.++...+... ++|+. |++++|++.
T Consensus 190 -------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~-L~l~~N~~~ 238 (285)
T 1ozn_A 190 -------------AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL---RALQY-LRLNDNPWV 238 (285)
T ss_dssp -------------CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC---TTCCE-EECCSSCEE
T ss_pred -------------cccCHhHccCcccccEeeCCCCcCCcCCHHHcccC---cccCE-EeccCCCcc
Confidence 22224445555666666666 5555554433222 24665 666666544
No 18
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=3.6e-22 Score=165.49 Aligned_cols=219 Identities=20% Similarity=0.253 Sum_probs=180.9
Q ss_pred CEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecC
Q psy3787 6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNN 83 (263)
Q Consensus 6 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 83 (263)
+.++.+++.++. +|. .-.++++.|++++|.++.++ .+..+++|++|++++|.++++.+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~--ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA--VPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS--CCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc--CCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 578888888877 554 23579999999999999776 4889999999999999999988888999999999999999
Q ss_pred c-Cccc-cccccCCCCcCEEEccCCcCCCc-cccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccc
Q psy3787 84 K-ISEV-SSNVGDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQN 160 (263)
Q Consensus 84 ~-l~~l-p~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 160 (263)
. ++.+ |..+..+++|++|++++|.++.+ +..+..+++|+.|++++|.++.++...+.. ...++.++++.+.
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~----- 164 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-LGNLTHLFLHGNR----- 164 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSC-----
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-CCCccEEECCCCc-----
Confidence 7 8877 66788999999999999999987 556899999999999999999988764433 2467778887776
Q ss_pred cCCCCCCCcCCcccccc-cccccCCcceeccc--ccccc-ChhHHhhcCCccceeEEEeccCCcccccCccccccccccc
Q psy3787 161 VDGGGMSSQESTSEINI-DKYKLDRTKTLTLC--KVINI-PESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIP 236 (263)
Q Consensus 161 ~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~--~~~~l-~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~ 236 (263)
...++. .+..+++|++|+++ .++.+ |..+..+ ++|+. |++++|+++.+|...+..+.++.
T Consensus 165 -----------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l----~~L~~-L~l~~n~l~~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 165 -----------ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL----GRLMT-LYLFANNLSALPTEALAPLRALQ 228 (285)
T ss_dssp -----------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC----TTCCE-EECCSSCCSCCCHHHHTTCTTCC
T ss_pred -----------ccccCHHHhcCccccCEEECCCCcccccCHhHccCc----ccccE-eeCCCCcCCcCCHHHcccCcccC
Confidence 334444 47889999999999 77766 4444433 36999 99999999999987777778889
Q ss_pred cccccCCceEEec
Q psy3787 237 ESVYMNRPFALTY 249 (263)
Q Consensus 237 ~~~~~~~~~~~~~ 249 (263)
.+.+.+||..+..
T Consensus 229 ~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 229 YLRLNDNPWVCDC 241 (285)
T ss_dssp EEECCSSCEECSG
T ss_pred EEeccCCCccCCC
Confidence 9999999987644
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=2.1e-22 Score=177.34 Aligned_cols=70 Identities=11% Similarity=0.125 Sum_probs=54.0
Q ss_pred ccccccccCCcceeccc--cccccCh-hHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCCceEEec
Q psy3787 175 INIDKYKLDRTKTLTLC--KVINIPE-SVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFALTY 249 (263)
Q Consensus 175 ~~~~~~~~~~L~~L~l~--~~~~l~~-~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~~~ 249 (263)
.+..+..+++|++|+++ .++.+++ .+..+ ++|+. |++++|+++.+|...+..+.++..+.+.+||..+..
T Consensus 339 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l----~~L~~-L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 339 DSRMFENLDKLEVLDLSYNHIRALGDQSFLGL----PNLKE-LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp CGGGGTTCTTCCEEECCSSCCCEECTTTTTTC----TTCCE-EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred ChhHhcCcccCCEEECCCCcccccChhhcccc----ccccE-EECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 35567888999999999 7776644 34333 36998 999999999998877777788888999999876654
No 20
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.8e-21 Score=160.22 Aligned_cols=194 Identities=24% Similarity=0.356 Sum_probs=146.2
Q ss_pred CCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 4 HLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
+.+.+++++++++. +|. +. ++++.|++++|.++.++ .+..+++|++|++++|.++.+++..|..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~~--ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA--IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSS--CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCc--cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 46788899888887 665 33 67899999999998776 4888899999999999999888887888999999999
Q ss_pred ecCcCccccc-cccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccc
Q psy3787 81 KNNKISEVSS-NVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHC 158 (263)
Q Consensus 81 ~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~ 158 (263)
++|+++.+|. .+..+++|++|++++|.++.++. .++.+++|+.|++++|.+++++...+... ..++.++++.+.+
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l-- 169 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL-TSLKELRLYNNQL-- 169 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCC--
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCC-cccceeEecCCcC--
Confidence 9999988765 45788899999999999988754 47889999999999999888876543322 3556666655552
Q ss_pred cccCCCCCCCcCCcccccc-cccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCccc
Q psy3787 159 QNVDGGGMSSQESTSEINI-DKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLD 222 (263)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~ 222 (263)
..+++ .+..+++|++|+++ .++.+|...+... ++|+. |++++|++.
T Consensus 170 --------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~-L~l~~N~~~ 218 (270)
T 2o6q_A 170 --------------KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL---EKLKM-LQLQENPWD 218 (270)
T ss_dssp --------------SCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC---TTCCE-EECCSSCBC
T ss_pred --------------cEeChhHhccCCCcCEEECCCCcCCcCCHHHhccc---cCCCE-EEecCCCee
Confidence 22332 35667778888887 6777776544332 35777 888887654
No 21
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=2.3e-22 Score=173.87 Aligned_cols=133 Identities=23% Similarity=0.356 Sum_probs=103.0
Q ss_pred CCCCCEEEeecCccCCCCccc--cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccE
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPL--FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSL 77 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 77 (263)
+++++.++++++.++. +|. +..+++|++|++++|.+..++ .+..+++|++|++++|.+..+++..+..+++|++
T Consensus 44 l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchhh--CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 4677888888888777 555 677888888888888887654 4777888888888888888877777778888888
Q ss_pred EEeecCcCcccccc-ccCCCCcCEEEccCCcCCCcc-ccccCCCcccEEEecCCCCCCcch
Q psy3787 78 LNLKNNKISEVSSN-VGDLINLAILDLSDNELTDVP-CELSSLFHLKSLFLGGNPIKTVRN 136 (263)
Q Consensus 78 L~l~~~~l~~lp~~-~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~ 136 (263)
|++++|+++.+|.. +..+++|++|++++|.+..++ ..++.+++|+.|++++|.++.++.
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 182 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL 182 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCG
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcccc
Confidence 88888888877765 477888888888888887664 347778888888888888777653
No 22
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=1.4e-22 Score=169.52 Aligned_cols=222 Identities=23% Similarity=0.273 Sum_probs=141.5
Q ss_pred CCCCEEEeecCccCCCCccc--cCCCCCCcEEEecCCCCCCC----cCCCCCCCCcEEEecCCCCCCCchhhhhCCCCcc
Q psy3787 3 SHLKTLDLSHNKLVSDSLPL--FIDMRSLTELNLSYNQLTML----PVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLS 76 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~l~~l----~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 76 (263)
+++++|++++|+++. ++. +.++++|++|++++|.++.+ ..+..+++|++|++++|.+..++.. +..+++|+
T Consensus 28 ~~l~~L~L~~n~l~~--i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~-~~~l~~L~ 104 (306)
T 2z66_A 28 SSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLE 104 (306)
T ss_dssp TTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE-EETCTTCC
T ss_pred CCCCEEECCCCccCc--cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh-cCCCCCCC
Confidence 356667777776665 433 56677777777777766643 1234456677777777766655443 55666777
Q ss_pred EEEeecCcCccccc--cccCCCCcCEEEccCCcCCCc-cccccCCCcccEEEecCCCCCC--cchHHHHhHHHHhhhhhC
Q psy3787 77 LLNLKNNKISEVSS--NVGDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNPIKT--VRNDILQDSKRIISHIKT 151 (263)
Q Consensus 77 ~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~~l~~l~~ 151 (263)
+|++++|+++.++. .+..+++|++|++++|.+... +..+..+++|+.|++++|.+.+ +|..... ...++.+++
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--l~~L~~L~L 182 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE--LRNLTFLDL 182 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTT--CTTCCEEEC
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhh--CcCCCEEEC
Confidence 77777776665543 456666777777777766643 4446666677777777776654 2322111 234555555
Q ss_pred CCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccc
Q psy3787 152 SRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTL 229 (263)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~ 229 (263)
+.+.+ .+..+..+..+++|++|+++ .++.++...+.. +++|+. |++++|+++.+++...
T Consensus 183 s~n~l---------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---l~~L~~-L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 183 SQCQL---------------EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC---LNSLQV-LDYSLNHIMTSKKQEL 243 (306)
T ss_dssp TTSCC---------------CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT---CTTCCE-EECTTSCCCBCSSSSC
T ss_pred CCCCc---------------CCcCHHHhcCCCCCCEEECCCCccCccChhhccC---cccCCE-eECCCCCCcccCHHHH
Confidence 55542 22335567888999999999 777776644433 336998 9999999987766665
Q ss_pred ccc-cccccccccCCceEEe
Q psy3787 230 CKV-INIPESVYMNRPFALT 248 (263)
Q Consensus 230 ~~~-~~l~~~~~~~~~~~~~ 248 (263)
..+ .++..+.+.+||..+.
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCCTTCCEEECTTCCEECS
T ss_pred HhhhccCCEEEccCCCeecc
Confidence 555 3677888899987654
No 23
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=1.1e-22 Score=171.19 Aligned_cols=215 Identities=23% Similarity=0.147 Sum_probs=170.9
Q ss_pred CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
+++|++|++++|.+.......+.++++|++|++++|.++.++.+..+++|++|++++|.++++++ .++|++|+++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~-----~~~L~~L~l~ 107 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC-----CCCcCEEECC
Confidence 35799999999999883223499999999999999999877678899999999999999887653 4789999999
Q ss_pred cCcCccccccccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccc
Q psy3787 82 NNKISEVSSNVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQN 160 (263)
Q Consensus 82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 160 (263)
+|+++.++.. .+++|++|++++|.++.++. .++.+++|+.|++++|.+++++...+......++.++++.+.+
T Consensus 108 ~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l---- 181 (317)
T 3o53_A 108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI---- 181 (317)
T ss_dssp SSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC----
T ss_pred CCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC----
Confidence 9999977654 36789999999999998754 6888999999999999999976554433335677888877763
Q ss_pred cCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccc
Q psy3787 161 VDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPES 238 (263)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~ 238 (263)
..++ ....+++|++|+++ .++.+|+.+.... +|+. |++++|+++.+|.. ...+.++..+
T Consensus 182 ------------~~~~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~----~L~~-L~L~~N~l~~l~~~-~~~l~~L~~L 242 (317)
T 3o53_A 182 ------------YDVK-GQVVFAKLKTLDLSSNKLAFMGPEFQSAA----GVTW-ISLRNNKLVLIEKA-LRFSQNLEHF 242 (317)
T ss_dssp ------------CEEE-CCCCCTTCCEEECCSSCCCEECGGGGGGT----TCSE-EECTTSCCCEECTT-CCCCTTCCEE
T ss_pred ------------cccc-cccccccCCEEECCCCcCCcchhhhcccC----cccE-EECcCCcccchhhH-hhcCCCCCEE
Confidence 3332 23357899999999 8888888765544 5998 99999999988864 3456777888
Q ss_pred cccCCceE
Q psy3787 239 VYMNRPFA 246 (263)
Q Consensus 239 ~~~~~~~~ 246 (263)
.+.+|+..
T Consensus 243 ~l~~N~~~ 250 (317)
T 3o53_A 243 DLRGNGFH 250 (317)
T ss_dssp ECTTCCCB
T ss_pred EccCCCcc
Confidence 88888865
No 24
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=1.1e-21 Score=163.26 Aligned_cols=193 Identities=24% Similarity=0.306 Sum_probs=149.5
Q ss_pred CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEE
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLL 78 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 78 (263)
++++++++++++.++. +|. +. +.++.|++++|.++.++ .+..+++|++|++++|.++.+++. ..+++|++|
T Consensus 9 l~~l~~l~~~~~~l~~--ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL 82 (290)
T ss_dssp STTCCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred cCCccEEECCCCCCCc--CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence 5778889999988887 655 32 68889999999988664 478888999999999988877653 678889999
Q ss_pred EeecCcCccccccccCCCCcCEEEccCCcCCCcc-ccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccc
Q psy3787 79 NLKNNKISEVSSNVGDLINLAILDLSDNELTDVP-CELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYH 157 (263)
Q Consensus 79 ~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 157 (263)
++++|+++.+|..+..+++|++|++++|.++.++ ..+..+++|+.|++++|.+++++...+... ..++.|+++.+.
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~-- 159 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT-PKLEKLSLANNN-- 159 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSC--
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccc-cCCCEEECCCCc--
Confidence 9999999988888888889999999999988876 458888899999999999888877654432 456667776666
Q ss_pred ccccCCCCCCCcCCccccccc-ccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCccc
Q psy3787 158 CQNVDGGGMSSQESTSEINID-KYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLD 222 (263)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~ 222 (263)
...++.. +..+++|+.|+++ .++.+|..++.... |+. +++++|.+.
T Consensus 160 --------------l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~----L~~-l~L~~Np~~ 208 (290)
T 1p9a_G 160 --------------LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL----LPF-AFLHGNPWL 208 (290)
T ss_dssp --------------CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCC----CSE-EECCSCCBC
T ss_pred --------------CCccCHHHhcCcCCCCEEECCCCcCCccChhhccccc----CCe-EEeCCCCcc
Confidence 3344433 4667888888888 77788877776654 887 888888543
No 25
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=1.9e-21 Score=164.41 Aligned_cols=230 Identities=22% Similarity=0.264 Sum_probs=165.3
Q ss_pred CCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 4 HLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
+++.++++++.+.. +|. + .+.++.|++++|.++.++ .+..+++|++|++++|.+.++.+..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~~--lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEK--VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCS--CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccc--cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 57889999998887 665 3 378999999999999876 4889999999999999999998888999999999999
Q ss_pred ecCcCccccccccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCC--cchHHHHhHHHHhhhhhCCCCccc
Q psy3787 81 KNNKISEVSSNVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKT--VRNDILQDSKRIISHIKTSRLDYH 157 (263)
Q Consensus 81 ~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~~l~~l~~~~~~~~ 157 (263)
++|.++.+|..+. ++|++|++++|.++.++. .+..+++|+.+++++|.+.. +....+.. ...++.++++.+.+.
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG-MKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG-CTTCCEEECCSSCCC
T ss_pred CCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccC-CCCcCEEECCCCccc
Confidence 9999999887764 678999999988887754 47888888888888888764 33222221 234555555544431
Q ss_pred cc------ccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccc
Q psy3787 158 CQ------NVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTL 229 (263)
Q Consensus 158 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~ 229 (263)
.- .+..-..+........+..+..+++|++|+++ .++.++...+.. +++|+. |++++|+++.+|.. .
T Consensus 185 ~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---l~~L~~-L~L~~N~l~~lp~~-l 259 (330)
T 1xku_A 185 TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN---TPHLRE-LHLNNNKLVKVPGG-L 259 (330)
T ss_dssp SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG---STTCCE-EECCSSCCSSCCTT-T
T ss_pred cCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC---CCCCCE-EECCCCcCccCChh-h
Confidence 00 00000000001122335568888999999999 777776643333 236999 99999999988874 3
Q ss_pred ccccccccccccCCce
Q psy3787 230 CKVINIPESVYMNRPF 245 (263)
Q Consensus 230 ~~~~~l~~~~~~~~~~ 245 (263)
..+.++..+.+.+|+.
T Consensus 260 ~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNI 275 (330)
T ss_dssp TTCSSCCEEECCSSCC
T ss_pred ccCCCcCEEECCCCcC
Confidence 3456666677777763
No 26
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=172.38 Aligned_cols=201 Identities=23% Similarity=0.302 Sum_probs=169.2
Q ss_pred CCCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcC--CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEE
Q psy3787 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLL 78 (263)
Q Consensus 1 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 78 (263)
.+++|++|++++|.+.......|.++++|++|++++|.++.++. +..+++|++|++++|.+..+++..|..+++|++|
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 165 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL 165 (440)
T ss_dssp SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEe
Confidence 36789999999999988433449999999999999999998873 8899999999999999999998889999999999
Q ss_pred EeecC-cCccccc-cccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcc
Q psy3787 79 NLKNN-KISEVSS-NVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDY 156 (263)
Q Consensus 79 ~l~~~-~l~~lp~-~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~ 156 (263)
++++| .++.++. .+..+++|++|++++|.++.+| .+..+++|+.|++++|.++++++..+... ..|+.++++.+.+
T Consensus 166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l 243 (440)
T 3zyj_A 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGL-MHLQKLWMIQSQI 243 (440)
T ss_dssp ECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCCC
T ss_pred CCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChhhhccC-ccCCEEECCCCce
Confidence 99994 6677765 5789999999999999999998 58899999999999999999866554432 4677777777663
Q ss_pred cccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCccc
Q psy3787 157 HCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLD 222 (263)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~ 222 (263)
....+..+..+++|++|+++ +++.+|...+... ++|+. |++++|.+.
T Consensus 244 ---------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~-L~L~~Np~~ 292 (440)
T 3zyj_A 244 ---------------QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL---HHLER-IHLHHNPWN 292 (440)
T ss_dssp ---------------CEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC---TTCCE-EECCSSCEE
T ss_pred ---------------eEEChhhhcCCCCCCEEECCCCCCCccChhHhccc---cCCCE-EEcCCCCcc
Confidence 33344567889999999999 8899988766543 37999 999999653
No 27
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=9.5e-23 Score=186.89 Aligned_cols=153 Identities=20% Similarity=0.349 Sum_probs=126.6
Q ss_pred CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCC-CCC--CcC-CCC------CCCCcEEEecCCCCCCCch-hhh
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQ-LTM--LPV-CTD------CKNLTHLLLGFNKINNMEN-DYF 69 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~--l~~-~~~------~~~L~~L~l~~n~~~~~~~-~~~ 69 (263)
+++|++|++++|.+.+ .+|. +.++++|++|++++|. ++. +|. +.. +++|++|++++|.++.++. ..+
T Consensus 248 l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l 326 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326 (636)
T ss_dssp CTTCCEEEEECCTTCS-SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH
T ss_pred cCCCCEEEecCCcCCc-cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh
Confidence 6789999999999887 3555 9999999999999998 874 662 444 4899999999999997665 268
Q ss_pred hCCCCccEEEeecCcCc-cccccccCCCCcCEEEccCCcCCCccccccCCCc-ccEEEecCCCCCCcchHHHHhHHHHhh
Q psy3787 70 LTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELTDVPCELSSLFH-LKSLFLGGNPIKTVRNDILQDSKRIIS 147 (263)
Q Consensus 70 ~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~~l~ 147 (263)
..+++|++|++++|+++ .+| .+..+++|++|++++|.++.+|..++.+++ |+.|++++|.++.+|..........++
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~ 405 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS 405 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEE
T ss_pred ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccC
Confidence 89999999999999999 899 888889999999999999988888999998 999999999999888643332223567
Q ss_pred hhhCCCCcc
Q psy3787 148 HIKTSRLDY 156 (263)
Q Consensus 148 ~l~~~~~~~ 156 (263)
.++++.+.+
T Consensus 406 ~L~Ls~N~l 414 (636)
T 4eco_A 406 AIDFSYNEI 414 (636)
T ss_dssp EEECCSSCT
T ss_pred EEECcCCcC
Confidence 777766664
No 28
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=3.7e-22 Score=177.49 Aligned_cols=214 Identities=23% Similarity=0.153 Sum_probs=170.8
Q ss_pred CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec
Q psy3787 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN 82 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 82 (263)
++|+.|++++|.+.......+.++++|++|++++|.++..+.+..+++|++|++++|.++++++ .++|++|++++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~ 108 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAAN 108 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCS
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcC
Confidence 4799999999999983333499999999999999999876668999999999999999887654 37899999999
Q ss_pred CcCccccccccCCCCcCEEEccCCcCCCc-cccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccccc
Q psy3787 83 NKISEVSSNVGDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNV 161 (263)
Q Consensus 83 ~~l~~lp~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 161 (263)
|.++.++.. .+++|+.|++++|.++.+ |..++.+++|+.|++++|.++++++..+......+..|+++.+.+
T Consensus 109 N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l----- 181 (487)
T 3oja_A 109 NNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI----- 181 (487)
T ss_dssp SCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-----
T ss_pred CcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc-----
Confidence 999977654 467899999999999976 556889999999999999999965544432235677888877773
Q ss_pred CCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccccccccccccc
Q psy3787 162 DGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESV 239 (263)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~ 239 (263)
..++ ....+++|+.|+++ .++.+|+.+..+. +|+. |++++|.++.+|.. ...+.++..+.
T Consensus 182 -----------~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~----~L~~-L~Ls~N~l~~lp~~-l~~l~~L~~L~ 243 (487)
T 3oja_A 182 -----------YDVK-GQVVFAKLKTLDLSSNKLAFMGPEFQSAA----GVTW-ISLRNNKLVLIEKA-LRFSQNLEHFD 243 (487)
T ss_dssp -----------CEEE-CCCCCTTCCEEECCSSCCCEECGGGGGGT----TCSE-EECTTSCCCEECTT-CCCCTTCCEEE
T ss_pred -----------cccc-ccccCCCCCEEECCCCCCCCCCHhHcCCC----CccE-EEecCCcCcccchh-hccCCCCCEEE
Confidence 3333 24458899999999 8888888766554 4998 99999999988874 33456677788
Q ss_pred ccCCceE
Q psy3787 240 YMNRPFA 246 (263)
Q Consensus 240 ~~~~~~~ 246 (263)
+.+|+..
T Consensus 244 l~~N~l~ 250 (487)
T 3oja_A 244 LRGNGFH 250 (487)
T ss_dssp CTTCCBC
T ss_pred cCCCCCc
Confidence 8888865
No 29
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=1.1e-21 Score=166.01 Aligned_cols=229 Identities=20% Similarity=0.255 Sum_probs=173.9
Q ss_pred CCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 4 HLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
+++.++++++.+.. +|. + .++++.|++++|.+..++ .+..+++|++|++++|.++.+.+..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~~--ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA--VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSS--CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccc--cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 58899999999887 665 4 379999999999999765 4899999999999999999998888999999999999
Q ss_pred ecCcCccccccccCCCCcCEEEccCCcCCCcccc-ccCCCcccEEEecCCCCCC--cchHHHHhHHHHhhhhhCCCCccc
Q psy3787 81 KNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKT--VRNDILQDSKRIISHIKTSRLDYH 157 (263)
Q Consensus 81 ~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~~l~~l~~~~~~~~ 157 (263)
++|+++.+|..+. ++|++|++++|.++.++.. ++.+++|+.|++++|.++. +....+... .++.++++.+.+.
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCBCCSSBCS
T ss_pred CCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEECcCCCCC
Confidence 9999999988765 7899999999999988754 8999999999999999874 333332222 4566666555431
Q ss_pred c------cccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccc
Q psy3787 158 C------QNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTL 229 (263)
Q Consensus 158 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~ 229 (263)
. ..+..-..+........+..+..+++|+.|+++ .++.++...+... ++|+. |++++|+++.+|.. .
T Consensus 186 ~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~-L~L~~N~l~~lp~~-l 260 (332)
T 2ft3_A 186 GIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL---PTLRE-LHLDNNKLSRVPAG-L 260 (332)
T ss_dssp SCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC---TTCCE-EECCSSCCCBCCTT-G
T ss_pred ccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC---CCCCE-EECCCCcCeecChh-h
Confidence 1 011111111111122334568889999999999 7887776444332 36999 99999999999875 4
Q ss_pred ccccccccccccCCce
Q psy3787 230 CKVINIPESVYMNRPF 245 (263)
Q Consensus 230 ~~~~~l~~~~~~~~~~ 245 (263)
..+.++..+.+.+|+.
T Consensus 261 ~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNI 276 (332)
T ss_dssp GGCTTCCEEECCSSCC
T ss_pred hcCccCCEEECCCCCC
Confidence 4566777777777764
No 30
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.9e-21 Score=163.05 Aligned_cols=196 Identities=19% Similarity=0.269 Sum_probs=163.9
Q ss_pred CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
+++|++|++++|.+.. ++.+..+++|++|++++|.+..++.+..+++|++|++++|.+..++ .+..+++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~--l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHTCCEEECTTSCCCC--CTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECT
T ss_pred cCCcCEEEeeCCCccC--chhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECC
Confidence 4579999999999887 6789999999999999999998888899999999999999999875 48889999999999
Q ss_pred cCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccccc
Q psy3787 82 NNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNV 161 (263)
Q Consensus 82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 161 (263)
+|+++.++. +..+++|++|++++|.++.++. ++.+++|+.|++++|.++.++. ... ...++.++++.+.+
T Consensus 116 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~--l~~L~~L~l~~n~l----- 185 (308)
T 1h6u_A 116 STQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LAN--LSKLTTLKADDNKI----- 185 (308)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTT--CTTCCEEECCSSCC-----
T ss_pred CCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcC--CCCCCEEECCCCcc-----
Confidence 999998876 7899999999999999998875 8899999999999999999876 211 34677777777663
Q ss_pred CCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccc
Q psy3787 162 DGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTL 229 (263)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~ 229 (263)
..++. +..+++|++|+++ .++.+++ +.. +++|+. |++++|+++..|....
T Consensus 186 -----------~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~----l~~L~~-L~l~~N~i~~~~~~~~ 237 (308)
T 1h6u_A 186 -----------SDISP-LASLPNLIEVHLKNNQISDVSP-LAN----TSNLFI-VTLTNQTITNQPVFYN 237 (308)
T ss_dssp -----------CCCGG-GGGCTTCCEEECTTSCCCBCGG-GTT----CTTCCE-EEEEEEEEECCCEECC
T ss_pred -----------CcChh-hcCCCCCCEEEccCCccCcccc-ccC----CCCCCE-EEccCCeeecCCeeec
Confidence 33333 7889999999999 7887773 333 446999 9999999988776443
No 31
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=1.9e-21 Score=171.41 Aligned_cols=201 Identities=22% Similarity=0.284 Sum_probs=169.2
Q ss_pred CCCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcC--CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEE
Q psy3787 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLL 78 (263)
Q Consensus 1 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 78 (263)
.+++|+.|++++|.+.......|.++++|++|++++|.++.++. +..+++|++|++++|.+..+++..|..+++|+.|
T Consensus 97 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 97 HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176 (452)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE
Confidence 36889999999999988333349999999999999999998773 8889999999999999999998889999999999
Q ss_pred Eeec-CcCccccc-cccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcc
Q psy3787 79 NLKN-NKISEVSS-NVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDY 156 (263)
Q Consensus 79 ~l~~-~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~ 156 (263)
++++ +.++.++. .+..+.+|++|++++|.++.+| .+..+++|+.|++++|.++++++..+... ..|+.++++.+.+
T Consensus 177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l 254 (452)
T 3zyi_A 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGL-SSLKKLWVMNSQV 254 (452)
T ss_dssp ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTC-TTCCEEECTTSCC
T ss_pred eCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCc-cCCCEEEeCCCcC
Confidence 9999 57777765 5789999999999999999987 58899999999999999999876655443 4677788777763
Q ss_pred cccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCccc
Q psy3787 157 HCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLD 222 (263)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~ 222 (263)
....+..+..+++|++|+++ .++.+|...+... ++|+. |++++|.+.
T Consensus 255 ---------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~-L~L~~Np~~ 303 (452)
T 3zyi_A 255 ---------------SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL---RYLVE-LHLHHNPWN 303 (452)
T ss_dssp ---------------CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC---TTCCE-EECCSSCEE
T ss_pred ---------------ceECHHHhcCCCCCCEEECCCCcCCccChHHhccc---cCCCE-EEccCCCcC
Confidence 33345568889999999999 8889988766543 37999 999999654
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=1e-21 Score=172.86 Aligned_cols=135 Identities=23% Similarity=0.336 Sum_probs=107.0
Q ss_pred CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCC-CCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT-MLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN 79 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 79 (263)
+++++|++++|.+.......+.++++|++|++++|.+. .++ .+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 56889999999888732333888999999999999876 343 478888999999999998888777788888999999
Q ss_pred eecCcCcc-cccc--ccCCCCcCEEEccCCcCCCc-ccc-ccCCCcccEEEecCCCCCCcchH
Q psy3787 80 LKNNKISE-VSSN--VGDLINLAILDLSDNELTDV-PCE-LSSLFHLKSLFLGGNPIKTVRND 137 (263)
Q Consensus 80 l~~~~l~~-lp~~--~~~l~~L~~L~l~~n~l~~l-~~~-~~~l~~L~~L~l~~n~l~~~~~~ 137 (263)
+++|+++. ++.. +..+++|++|++++|.++.+ |.. ++.+++|+.|++++|.++++++.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 172 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh
Confidence 99998884 3433 77888899999999888876 544 78888888888888888775443
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=5.7e-21 Score=172.71 Aligned_cols=147 Identities=17% Similarity=0.170 Sum_probs=93.6
Q ss_pred CCCCcCEEEccCCcCCC-ccccccCCCcccEEEecCCCCCCcchHHHHhH-HHHhhhhhCCCCcccccccCCCCCCC---
Q psy3787 94 DLINLAILDLSDNELTD-VPCELSSLFHLKSLFLGGNPIKTVRNDILQDS-KRIISHIKTSRLDYHCQNVDGGGMSS--- 168 (263)
Q Consensus 94 ~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~--- 168 (263)
.+++|++|++++|.++. +|..++.+++|+.|++++|.+++++....... ...++.++++.+.+.-. +....+..
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~l~~ 429 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH-AYDRTCAWAES 429 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC-CSSCCCCCCTT
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc-cChhhhcCccc
Confidence 44566666666666664 45566777777777777777776653221111 34566666665553110 00000000
Q ss_pred --------cCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccc
Q psy3787 169 --------QESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPES 238 (263)
Q Consensus 169 --------~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~ 238 (263)
....+..+..+. ++|++|+++ +++.+|.+++.+. +|+. |++++|+++.+|...+..+.++..+
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~----~L~~-L~L~~N~l~~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQ----ALQE-LNVASNQLKSVPDGVFDRLTSLQYI 502 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSC----CCSE-EECCSSCCCCCCTTSTTTCTTCCCE
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCC----CCCE-EECCCCCCCCCCHHHHhcCCCCCEE
Confidence 000122222222 689999999 8889998887544 5999 9999999999998766677888899
Q ss_pred cccCCceEEe
Q psy3787 239 VYMNRPFALT 248 (263)
Q Consensus 239 ~~~~~~~~~~ 248 (263)
.+.+||+.+.
T Consensus 503 ~l~~N~~~c~ 512 (562)
T 3a79_B 503 WLHDNPWDCT 512 (562)
T ss_dssp ECCSCCBCCC
T ss_pred EecCCCcCCC
Confidence 9999997764
No 34
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=2.7e-21 Score=160.82 Aligned_cols=201 Identities=19% Similarity=0.195 Sum_probs=167.0
Q ss_pred cCCCCCCcEEEecCCCCCCCcC-CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEE
Q psy3787 23 FIDMRSLTELNLSYNQLTMLPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAIL 101 (263)
Q Consensus 23 ~~~l~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L 101 (263)
+.++++++.++++++.++.+|. + .+.++.|++++|.+..+.+..+..+++|++|++++|.++.++.. ..+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 6788999999999999998884 3 36899999999999998888899999999999999999988765 788999999
Q ss_pred EccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccc-ccc
Q psy3787 102 DLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINI-DKY 180 (263)
Q Consensus 102 ~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 180 (263)
++++|.++.+|..+..+++|+.|++++|.++++++..+... ..++.|+++.+.+ ..++. .+.
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l-~~L~~L~L~~N~l----------------~~~~~~~~~ 145 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNEL----------------KTLPPGLLT 145 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC-TTCCEEECTTSCC----------------CCCCTTTTT
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCC-CCCCEEECCCCCC----------------CccChhhcc
Confidence 99999999999889999999999999999999886655442 4677788877773 33333 357
Q ss_pred ccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCCceEEe
Q psy3787 181 KLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFALT 248 (263)
Q Consensus 181 ~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~~ 248 (263)
.+++|+.|+++ +++.+|...+.... +|+. |++++|+++.+|...+ +...+..+.+.+||+.+.
T Consensus 146 ~l~~L~~L~L~~N~l~~l~~~~~~~l~---~L~~-L~L~~N~l~~ip~~~~-~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 146 PTPKLEKLSLANNNLTELPAGLLNGLE---NLDT-LLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp TCTTCCEEECTTSCCSCCCTTTTTTCT---TCCE-EECCSSCCCCCCTTTT-TTCCCSEEECCSCCBCCS
T ss_pred cccCCCEEECCCCcCCccCHHHhcCcC---CCCE-EECCCCcCCccChhhc-ccccCCeEEeCCCCccCc
Confidence 88999999999 88999987765433 7999 9999999999988654 345677888999998764
No 35
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=2.4e-22 Score=168.81 Aligned_cols=216 Identities=18% Similarity=0.222 Sum_probs=165.0
Q ss_pred CCEEEeecCccCCCCccc-cC-------CCCCCcEEEecCCCCC-CCcC-C--CCCCCCcEEEecCCCCCCCchhhhhCC
Q psy3787 5 LKTLDLSHNKLVSDSLPL-FI-------DMRSLTELNLSYNQLT-MLPV-C--TDCKNLTHLLLGFNKINNMENDYFLTL 72 (263)
Q Consensus 5 L~~L~l~~n~~~~~~~~~-~~-------~l~~L~~L~l~~n~l~-~l~~-~--~~~~~L~~L~l~~n~~~~~~~~~~~~l 72 (263)
++.|++++|.+....++. +. ++++|++|++++|.++ .+|. + ..+++|++|++++|.+.+. +..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 456677777775434444 33 6899999999999998 4553 3 7889999999999999988 4556666
Q ss_pred -----CCccEEEeecCcCcccc-ccccCCCCcCEEEccCCcCCC---ccccc--cCCCcccEEEecCCCCCCcchHHHHh
Q psy3787 73 -----TKLSLLNLKNNKISEVS-SNVGDLINLAILDLSDNELTD---VPCEL--SSLFHLKSLFLGGNPIKTVRNDILQD 141 (263)
Q Consensus 73 -----~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~n~l~~---l~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~ 141 (263)
++|++|++++|+++.++ ..++.+++|++|++++|.+.+ ++..+ +.+++|+.|++++|.+++++......
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 89999999999999776 678899999999999998763 34444 88999999999999998655432221
Q ss_pred H--HHHhhhhhCCCCcccccccCCCCCCCcCCccccc-ccccccCCcceeccc--cccccChhHHhhcCCccceeEEEec
Q psy3787 142 S--KRIISHIKTSRLDYHCQNVDGGGMSSQESTSEIN-IDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINI 216 (263)
Q Consensus 142 ~--~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~l 216 (263)
. ...++.++++.+.+ .+..+ ..+..+++|++|+++ .++.+|..++ . +|+. |++
T Consensus 224 ~~~l~~L~~L~Ls~N~l---------------~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~----~L~~-L~L 281 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSL---------------RDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--A----KLSV-LDL 281 (312)
T ss_dssp HHTTCCCSEEECTTSCC---------------CSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--S----EEEE-EEC
T ss_pred HhcCCCCCEEECCCCcC---------------CcccchhhhhhcCCCCEEECCCCccChhhhhcc--C----CceE-EEC
Confidence 1 24677788877763 22222 345668999999999 8889998766 3 5999 999
Q ss_pred cCCcccccCccccccccccccccccCCce
Q psy3787 217 DKYKLDRTKTLTLCKVINIPESVYMNRPF 245 (263)
Q Consensus 217 s~n~l~~ip~~~~~~~~~l~~~~~~~~~~ 245 (263)
++|+|+.+|. ...+.++..+.+.+|+.
T Consensus 282 s~N~l~~~p~--~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 282 SYNRLDRNPS--PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CSSCCCSCCC--TTTSCEEEEEECTTCTT
T ss_pred CCCCCCCChh--HhhCCCCCEEeccCCCC
Confidence 9999998876 44567788888888874
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=9.4e-22 Score=179.09 Aligned_cols=134 Identities=22% Similarity=0.355 Sum_probs=121.2
Q ss_pred CCCCCEEEeecCccCCCCccc--cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccE
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPL--FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSL 77 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 77 (263)
+.+++.+++++|.+.. +|+ +.++++|++|++++|.+..++ .+..+++|++|++++|.+.++++..|..+++|++
T Consensus 50 l~~l~~l~l~~~~l~~--lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCCC--cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 4678999999999988 666 888999999999999999765 5899999999999999999999988999999999
Q ss_pred EEeecCcCcccccc-ccCCCCcCEEEccCCcCCCcc-ccccCCCcccEEEecCCCCCCcchH
Q psy3787 78 LNLKNNKISEVSSN-VGDLINLAILDLSDNELTDVP-CELSSLFHLKSLFLGGNPIKTVRND 137 (263)
Q Consensus 78 L~l~~~~l~~lp~~-~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~ 137 (263)
|++++|.++.+|.. ++.+++|++|++++|.++.++ ..++.+++|+.|++++|.+++++..
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 189 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS 189 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGG
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChh
Confidence 99999999999876 589999999999999999775 4699999999999999999987644
No 37
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2.1e-21 Score=156.85 Aligned_cols=192 Identities=14% Similarity=0.233 Sum_probs=116.1
Q ss_pred CCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCC-CCCCchhhhhCCCCccEEEeec-CcCccccc-cccCCCCcCEEE
Q psy3787 28 SLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNK-INNMENDYFLTLTKLSLLNLKN-NKISEVSS-NVGDLINLAILD 102 (263)
Q Consensus 28 ~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~-~~l~~lp~-~~~~l~~L~~L~ 102 (263)
+++.|++++|.++.++ .+..+++|++|++++|. ++.+++..|..+++|++|++++ |+++.++. .+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 5666666666666554 25566666666666664 6666555566666666666666 66665543 355666666666
Q ss_pred ccCCcCCCccccccCCCccc---EEEecCC-CCCCcchHHHHhHHHHhh-hhhCCCCcccccccCCCCCCCcCCcccccc
Q psy3787 103 LSDNELTDVPCELSSLFHLK---SLFLGGN-PIKTVRNDILQDSKRIIS-HIKTSRLDYHCQNVDGGGMSSQESTSEINI 177 (263)
Q Consensus 103 l~~n~l~~l~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (263)
+++|.++.+|. ++.+++|+ .+++++| .++.++...+... ..++ .++++.+. ...++.
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l-~~L~~~L~l~~n~----------------l~~i~~ 173 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL-CNETLTLKLYNNG----------------FTSVQG 173 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT-BSSEEEEECCSCC----------------CCEECT
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccch-hcceeEEEcCCCC----------------CcccCH
Confidence 66666666654 55555555 6666666 6666555433321 2344 44444444 223333
Q ss_pred cccccCCcceeccc-c--ccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCC
Q psy3787 178 DKYKLDRTKTLTLC-K--VINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNR 243 (263)
Q Consensus 178 ~~~~~~~L~~L~l~-~--~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~ 243 (263)
.....++|+.|+++ + ++.+|...+... .++|+. |++++|+++.+|...+ .++..+.+.++
T Consensus 174 ~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l--~~~L~~-L~l~~N~l~~l~~~~~---~~L~~L~l~~~ 236 (239)
T 2xwt_C 174 YAFNGTKLDAVYLNKNKYLTVIDKDAFGGV--YSGPSL-LDVSQTSVTALPSKGL---EHLKELIARNT 236 (239)
T ss_dssp TTTTTCEEEEEECTTCTTCCEECTTTTTTC--SBCCSE-EECTTCCCCCCCCTTC---TTCSEEECTTC
T ss_pred hhcCCCCCCEEEcCCCCCcccCCHHHhhcc--ccCCcE-EECCCCccccCChhHh---ccCceeeccCc
Confidence 33333788899998 3 888877665543 026998 9999999999887643 45555555444
No 38
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=2.4e-21 Score=176.47 Aligned_cols=138 Identities=20% Similarity=0.167 Sum_probs=106.8
Q ss_pred CCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
+++.|++++|.++......|.++++|++|++++|.+..+. .|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 5788888888888732233888888888888888887553 47888888888888888888877778888888888888
Q ss_pred cCcCccc-cccccCCCCcCEEEccCCcCCCcc-ccccCCCcccEEEecCCCCCCcchHHHHh
Q psy3787 82 NNKISEV-SSNVGDLINLAILDLSDNELTDVP-CELSSLFHLKSLFLGGNPIKTVRNDILQD 141 (263)
Q Consensus 82 ~~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 141 (263)
+|.++.+ +..+..+++|++|++++|.+..++ ..+..+++|+.|++++|.++++++..+..
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 175 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHT
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhh
Confidence 8888876 556788888888888888888652 34445888888888888888876554433
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=1.3e-21 Score=180.61 Aligned_cols=226 Identities=22% Similarity=0.259 Sum_probs=137.0
Q ss_pred CCEEEeecCccCCCCccccCCCCCCcEEEecCCCCC-CCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 5 LKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT-MLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 5 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
|+.|++++|++.......+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+..+.+..+..+++|+.|+++
T Consensus 383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~ 462 (680)
T 1ziw_A 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence 444444444444421122555555555555555554 222 34555555555555555555555555555566666666
Q ss_pred cCcCc---cccccccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCCcchHHHH-------hHHHHhhhhh
Q psy3787 82 NNKIS---EVSSNVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKTVRNDILQ-------DSKRIISHIK 150 (263)
Q Consensus 82 ~~~l~---~lp~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~-------~~~~~l~~l~ 150 (263)
+|.++ .+|..+..+++|++|++++|.++.++. .+..+++|+.|++++|.+++++...+. .....++.++
T Consensus 463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 542 (680)
T 1ziw_A 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542 (680)
T ss_dssp TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE
T ss_pred cccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEE
Confidence 55543 345556666666666666666665543 356666666666666666654322110 0023444555
Q ss_pred CCCCcccccccCCCCCCCcCCcccccc-cccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcc
Q psy3787 151 TSRLDYHCQNVDGGGMSSQESTSEINI-DKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTL 227 (263)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~ 227 (263)
++.+. ...+|. .+..+++|++|+++ +++.+|...+.... +|+. |++++|+++.+++.
T Consensus 543 L~~N~----------------l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~---~L~~-L~L~~N~l~~~~~~ 602 (680)
T 1ziw_A 543 LESNG----------------FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV---SLKS-LNLQKNLITSVEKK 602 (680)
T ss_dssp CCSSC----------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---TCCE-EECTTSCCCBCCHH
T ss_pred CCCCC----------------CCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCC---CCCE-EECCCCcCCccChh
Confidence 54444 334554 37888999999999 88888887665433 6998 99999999988876
Q ss_pred ccc-cccccccccccCCceEEecc
Q psy3787 228 TLC-KVINIPESVYMNRPFALTYN 250 (263)
Q Consensus 228 ~~~-~~~~l~~~~~~~~~~~~~~~ 250 (263)
.+. .+.++..+.+.+||+.+...
T Consensus 603 ~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 603 VFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp HHHHHHTTCSEEECTTCCCCBCCC
T ss_pred HhcccccccCEEEccCCCcccCCc
Confidence 554 56778888999999877654
No 40
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=2.9e-21 Score=161.62 Aligned_cols=217 Identities=19% Similarity=0.169 Sum_probs=174.5
Q ss_pred CEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcC--CCCCCCCcEEEecCCCCCCCc--hhhhhCCCCccEEEee
Q psy3787 6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNME--NDYFLTLTKLSLLNLK 81 (263)
Q Consensus 6 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~l~ 81 (263)
+.++++++.++. +|. .-.++++.|++++|.++.+|. +..+++|++|++++|.+.... +..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~--ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTS--VPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSS--CCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCccc--CCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 467888888877 665 123689999999999998884 789999999999999998553 4557789999999999
Q ss_pred cCcCccccccccCCCCcCEEEccCCcCCCccc--cccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccc
Q psy3787 82 NNKISEVSSNVGDLINLAILDLSDNELTDVPC--ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQ 159 (263)
Q Consensus 82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 159 (263)
+|.++.+|..+..+++|++|++++|.++.++. .+..+++|+.|++++|.+..+.+..+.. ...++.++++.+.+
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l--- 162 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNSF--- 162 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT-CTTCCEEECTTCEE---
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc-CcCCCEEECCCCcc---
Confidence 99999999989999999999999999998764 6899999999999999998866554433 24677777777663
Q ss_pred ccCCCCCCCcCCcc-cccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccc
Q psy3787 160 NVDGGGMSSQESTS-EINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIP 236 (263)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~ 236 (263)
.+ ..|..+..+++|++|+++ .++.+++..+.. +++|+. |++++|+++.++...+..+.++.
T Consensus 163 ------------~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---l~~L~~-L~L~~N~l~~~~~~~~~~l~~L~ 226 (306)
T 2z66_A 163 ------------QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS---LSSLQV-LNMSHNNFFSLDTFPYKCLNSLQ 226 (306)
T ss_dssp ------------GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT---CTTCCE-EECTTSCCSBCCSGGGTTCTTCC
T ss_pred ------------ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC---CCCCCE-EECCCCccCccChhhccCcccCC
Confidence 22 356678899999999999 788775443332 336999 99999999998887666667777
Q ss_pred cccccCCce
Q psy3787 237 ESVYMNRPF 245 (263)
Q Consensus 237 ~~~~~~~~~ 245 (263)
.+.+.+|+.
T Consensus 227 ~L~L~~N~l 235 (306)
T 2z66_A 227 VLDYSLNHI 235 (306)
T ss_dssp EEECTTSCC
T ss_pred EeECCCCCC
Confidence 777777753
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=1.7e-20 Score=159.48 Aligned_cols=128 Identities=26% Similarity=0.376 Sum_probs=58.8
Q ss_pred CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec
Q psy3787 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN 82 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 82 (263)
++|++|++++|+++. ++.+.++++|++|++++|.++.++.+..+++|++|++++|.+..+++ +..+++|+.+++++
T Consensus 66 ~~L~~L~l~~n~i~~--~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~ 141 (347)
T 4fmz_A 66 TNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGA 141 (347)
T ss_dssp TTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTT
T ss_pred CCccEEEccCCcccc--chhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCC
Confidence 344444444444443 33344444444444444444444444444444444444444444333 34444444444444
Q ss_pred CcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcc
Q psy3787 83 NKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVR 135 (263)
Q Consensus 83 ~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~ 135 (263)
|.....+..+..+++|+++++++|.+..++. ++.+++|+.+++++|.+.+++
T Consensus 142 n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~ 193 (347)
T 4fmz_A 142 NHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS 193 (347)
T ss_dssp CTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCG
T ss_pred CCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccc
Confidence 4222222224444455555555554444432 445555555555555555544
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=2.1e-20 Score=158.99 Aligned_cols=226 Identities=19% Similarity=0.266 Sum_probs=126.8
Q ss_pred CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCC-CCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQ-LTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
+++|++|++++|.+.. ++.+..+++|+.|++++|. +..++.+..+++|++|++++|.+...++ +..+++|+++++
T Consensus 109 l~~L~~L~l~~n~i~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l 184 (347)
T 4fmz_A 109 LTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSL 184 (347)
T ss_dssp CTTCSEEECTTSCCCC--CGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEEC
T ss_pred CCcCCEEECcCCcccC--chhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEc
Confidence 5778888888888776 5557777888888888774 4455556667777777777777666554 556667777777
Q ss_pred ecCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccc-
Q psy3787 81 KNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQ- 159 (263)
Q Consensus 81 ~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~- 159 (263)
++|.++.++. +..+++|+.+++++|.+..++. +..+++|+.|++++|.++.++. ... ...++.++++.+.+...
T Consensus 185 ~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~--l~~L~~L~l~~n~l~~~~ 259 (347)
T 4fmz_A 185 NYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LAN--LSQLTWLEIGTNQISDIN 259 (347)
T ss_dssp TTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTT--CTTCCEEECCSSCCCCCG
T ss_pred cCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhc--CCCCCEEECCCCccCCCh
Confidence 7776665554 4455555555555555554433 4555555555555555555443 111 22344444433332000
Q ss_pred ------ccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccccc
Q psy3787 160 ------NVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCK 231 (263)
Q Consensus 160 ------~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~ 231 (263)
.+..-..+.. ....+ +.+..+++|++|+++ .++..+...+.. +++|+. |++++|+++.+++ ...
T Consensus 260 ~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~---l~~L~~-L~L~~n~l~~~~~--~~~ 331 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSN-QISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGG---LTNLTT-LFLSQNHITDIRP--LAS 331 (347)
T ss_dssp GGTTCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHT---CTTCSE-EECCSSSCCCCGG--GGG
T ss_pred hHhcCCCcCEEEccCC-ccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhc---cccCCE-EEccCCccccccC--hhh
Confidence 0000000000 01222 345666777777777 555444433332 225777 7777777776655 333
Q ss_pred ccccccccccCCc
Q psy3787 232 VINIPESVYMNRP 244 (263)
Q Consensus 232 ~~~l~~~~~~~~~ 244 (263)
+.++..+.+.+|+
T Consensus 332 l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 332 LSKMDSADFANQV 344 (347)
T ss_dssp CTTCSEESSSCC-
T ss_pred hhccceeehhhhc
Confidence 4566666666665
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=1.4e-21 Score=166.90 Aligned_cols=218 Identities=19% Similarity=0.217 Sum_probs=168.0
Q ss_pred CCCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcC--CCCCCCCcEEEecCCCCCCCch-hhhhCCCCccE
Q psy3787 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNMEN-DYFLTLTKLSL 77 (263)
Q Consensus 1 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~ 77 (263)
.+++|+.|++++|+++......+.++++|++|++++|.++.++. +..+++|++|++++|.+..++. ..+..+++|++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcE
Confidence 36789999999999987323339999999999999999998874 7889999999999999998877 66888999999
Q ss_pred EEeecC-cCccc-cccccCCCCcCEEEccCCcCCCc-cccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCC
Q psy3787 78 LNLKNN-KISEV-SSNVGDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRL 154 (263)
Q Consensus 78 L~l~~~-~l~~l-p~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~ 154 (263)
|++++| .++.+ +..+..+++|++|++++|.+..+ |..++.+++|+.|++++|.+..++...+.. ...++.++++.+
T Consensus 154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~L~~n 232 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV-TSSVECLELRDT 232 (353)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH-TTTEEEEEEESC
T ss_pred EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhh-cccccEEECCCC
Confidence 999999 57766 45688999999999999999876 677999999999999999998887665433 245667777665
Q ss_pred cccccccCCCCC------------CCcC----CcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEec
Q psy3787 155 DYHCQNVDGGGM------------SSQE----STSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINI 216 (263)
Q Consensus 155 ~~~~~~~~~~~~------------~~~~----~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~l 216 (263)
.+.-........ .... ....+|..+..+++|++|+++ .++.+|.+++... ++|+. |++
T Consensus 233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l---~~L~~-L~L 308 (353)
T 2z80_A 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRL---TSLQK-IWL 308 (353)
T ss_dssp BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTC---TTCCE-EEC
T ss_pred ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcC---CCCCE-EEe
Confidence 542110000000 0000 011355667889999999999 8899998875433 37999 999
Q ss_pred cCCcccc
Q psy3787 217 DKYKLDR 223 (263)
Q Consensus 217 s~n~l~~ 223 (263)
++|++..
T Consensus 309 ~~N~~~~ 315 (353)
T 2z80_A 309 HTNPWDC 315 (353)
T ss_dssp CSSCBCC
T ss_pred eCCCccC
Confidence 9998873
No 44
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=9.1e-22 Score=180.41 Aligned_cols=218 Identities=19% Similarity=0.273 Sum_probs=119.0
Q ss_pred CCCEEEeecCccCCCCccc-cCCCCC-CcEEEecCCCCCCCcC-CCC--CCCCcEEEecCCCCCCCchhhhh-------C
Q psy3787 4 HLKTLDLSHNKLVSDSLPL-FIDMRS-LTELNLSYNQLTMLPV-CTD--CKNLTHLLLGFNKINNMENDYFL-------T 71 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~~~~~-~~~l~~-L~~L~l~~n~l~~l~~-~~~--~~~L~~L~l~~n~~~~~~~~~~~-------~ 71 (263)
+|+.|++++|++.. +|. +.++++ |+.|++++|.++.+|. +.. +++|++|++++|.+.+..+..+. .
T Consensus 354 ~L~~L~L~~N~l~~--lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 354 KLASLNLAYNQITE--IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431 (636)
T ss_dssp EESEEECCSSEEEE--CCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC
T ss_pred CCCEEECCCCcccc--ccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccccc
Confidence 34444444444442 333 445555 5555555555555442 222 22455555555555544444344 4
Q ss_pred CCCccEEEeecCcCccccccc-cCCCCcCEEEccCCcCCCcccccc-CC-------CcccEEEecCCCCCCcchHHHHhH
Q psy3787 72 LTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCELS-SL-------FHLKSLFLGGNPIKTVRNDILQDS 142 (263)
Q Consensus 72 l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~L~l~~n~l~~l~~~~~-~l-------~~L~~L~l~~n~l~~~~~~~~~~~ 142 (263)
+.+|++|++++|+++.+|..+ ..+++|++|++++|.++.+|..+. .. ++|+.|++++|.++.+|..++...
T Consensus 432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~ 511 (636)
T 4eco_A 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511 (636)
T ss_dssp CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTT
T ss_pred CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhcc
Confidence 445566666666655555442 345556666666665555544321 11 256666666666665554443111
Q ss_pred HHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--------c-ccccChhHHhhcCCccceeEE
Q psy3787 143 KRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--------K-VINIPESVYMRGMSSQECTIE 213 (263)
Q Consensus 143 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--------~-~~~l~~~~~~~~~~~~~L~~~ 213 (263)
...++.++++.+. ...+|..+..+++|++|+++ + .+.+|..+..+. +|+.
T Consensus 512 l~~L~~L~Ls~N~----------------l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~----~L~~- 570 (636)
T 4eco_A 512 LPYLVGIDLSYNS----------------FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP----SLTQ- 570 (636)
T ss_dssp CTTCCEEECCSSC----------------CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS----SCCE-
T ss_pred CCCcCEEECCCCC----------------CCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC----CCCE-
Confidence 2345555555554 33366667777777777772 2 356666665544 3777
Q ss_pred EeccCCcccccCccccccccccccccccCCceEE
Q psy3787 214 INIDKYKLDRTKTLTLCKVINIPESVYMNRPFAL 247 (263)
Q Consensus 214 L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~ 247 (263)
|++++|+++.+|.... .++..+.+.+||..+
T Consensus 571 L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 571 LQIGSNDIRKVNEKIT---PNISVLDIKDNPNIS 601 (636)
T ss_dssp EECCSSCCCBCCSCCC---TTCCEEECCSCTTCE
T ss_pred EECCCCcCCccCHhHh---CcCCEEECcCCCCcc
Confidence 8888888777776533 556667777776443
No 45
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=1.5e-20 Score=154.88 Aligned_cols=151 Identities=22% Similarity=0.320 Sum_probs=110.0
Q ss_pred CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
+++|+.|++++|.+.. ++.+..+++|++|++++|.+..++.+..+++|++|++++|.++++++..+..+++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp HTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 4567888888887776 66677788888888888888877777778888888888888887777777778888888888
Q ss_pred cCcCcccccc-ccCCCCcCEEEccCCcCCCcccc-ccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCc
Q psy3787 82 NNKISEVSSN-VGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLD 155 (263)
Q Consensus 82 ~~~l~~lp~~-~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~ 155 (263)
+|+++.++.. +..+++|++|++++|.++.++.. ++.+++|+.|++++|.+++++...+... ..++.+++..+.
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~N~ 192 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL-TQLKDLRLYQNQ 192 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSC
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCC-ccCCEEECCCCc
Confidence 8888866554 57778888888888888776544 6778888888888888777665432221 234444444444
No 46
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.85 E-value=3.5e-20 Score=152.48 Aligned_cols=172 Identities=28% Similarity=0.337 Sum_probs=146.7
Q ss_pred CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcC--CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
+++++|++++|++.......+.++++|++|++++|.++.++. +..+++|++|++++|.+..+++..+..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 468999999999998333349999999999999999998874 688999999999999999999888899999999999
Q ss_pred ecCcCccccc-cccCCCCcCEEEccCCcCCCcccc-ccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccc
Q psy3787 81 KNNKISEVSS-NVGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHC 158 (263)
Q Consensus 81 ~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~ 158 (263)
++|.++.++. .+..+++|++|++++|.++.+|.. ++.+++|+.|++++|.++.++...+.. ...++.++++.+.+
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~N~l-- 193 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK-LTELKTLKLDNNQL-- 193 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT-CTTCCEEECCSSCC--
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhcc-CCCcCEEECCCCcC--
Confidence 9999998765 478999999999999999988765 889999999999999999988765543 24677788877763
Q ss_pred cccCCCCCCCcCCcccccc-cccccCCcceeccc
Q psy3787 159 QNVDGGGMSSQESTSEINI-DKYKLDRTKTLTLC 191 (263)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~ 191 (263)
..++. .+..+++|+.|+++
T Consensus 194 --------------~~~~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 194 --------------KRVPEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp --------------SCCCTTTTTTCTTCCEEECC
T ss_pred --------------CcCCHHHhccccCCCEEEec
Confidence 33443 36788999999999
No 47
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=9.3e-21 Score=178.07 Aligned_cols=151 Identities=21% Similarity=0.274 Sum_probs=110.3
Q ss_pred CCCCCEEEeecCccCCCCccc---cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCC-ccE
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPL---FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTK-LSL 77 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~ 77 (263)
+++|+.|++++|.+.. +|. +.++++|+.|++++|.++.+|.+..+++|+.|++++|.+..++.. +..+++ |+.
T Consensus 547 l~~L~~L~Ls~N~L~~--ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~-l~~l~~~L~~ 623 (876)
T 4ecn_A 547 GPKIQIFYMGYNNLEE--FPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPED-FCAFTDQVEG 623 (876)
T ss_dssp TTTCCEEECCSSCCCB--CCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTT-SCEECTTCCE
T ss_pred cCCccEEEeeCCcCCc--cCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHH-HhhccccCCE
Confidence 4578888888888874 554 788888888888888888777788888888888888888855543 677777 888
Q ss_pred EEeecCcCccccccccCCCC--cCEEEccCCcCCCc-c---cccc--CCCcccEEEecCCCCCCcchHHHHhHHHHhhhh
Q psy3787 78 LNLKNNKISEVSSNVGDLIN--LAILDLSDNELTDV-P---CELS--SLFHLKSLFLGGNPIKTVRNDILQDSKRIISHI 149 (263)
Q Consensus 78 L~l~~~~l~~lp~~~~~l~~--L~~L~l~~n~l~~l-~---~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l 149 (263)
|++++|+++.+|..+..... |+.|++++|.+... | ..+. .+++|+.|++++|.++.+|...+... ..++.|
T Consensus 624 L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l-~~L~~L 702 (876)
T 4ecn_A 624 LGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG-SPISTI 702 (876)
T ss_dssp EECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTT-CCCSEE
T ss_pred EECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccC-CCCCEE
Confidence 88888888888877665543 88888888877643 2 1222 34478888888888888887765432 346667
Q ss_pred hCCCCcc
Q psy3787 150 KTSRLDY 156 (263)
Q Consensus 150 ~~~~~~~ 156 (263)
+++.+.+
T Consensus 703 ~Ls~N~L 709 (876)
T 4ecn_A 703 ILSNNLM 709 (876)
T ss_dssp ECCSCCC
T ss_pred ECCCCcC
Confidence 7766653
No 48
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=5.6e-21 Score=174.01 Aligned_cols=242 Identities=19% Similarity=0.154 Sum_probs=146.3
Q ss_pred CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCC-CCc--CCCCCCCCcEEEecCCCCCCCc--hhhhhCCCCcc
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT-MLP--VCTDCKNLTHLLLGFNKINNME--NDYFLTLTKLS 76 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~--~~~~~~~L~~L~l~~n~~~~~~--~~~~~~l~~L~ 76 (263)
+++|++|++++|.+.......+.++++|++|++++|.+. .++ .+..+++|++|++++|.+.... +..+..+++|+
T Consensus 300 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 379 (606)
T 3t6q_A 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379 (606)
T ss_dssp CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCC
T ss_pred cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCC
Confidence 466777777777776621222666777777777777665 333 2566666777777777666554 44466666666
Q ss_pred EEEeecCcCccc-cccccCCCCcCEEEccCCcCCCc-cc-cccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCC
Q psy3787 77 LLNLKNNKISEV-SSNVGDLINLAILDLSDNELTDV-PC-ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSR 153 (263)
Q Consensus 77 ~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l-~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~ 153 (263)
+|++++|++..+ |..+..+++|++|++++|.+... +. .+..+++|+.|++++|.++..++..+.. ...++.+++++
T Consensus 380 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~ 458 (606)
T 3t6q_A 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG-LPALQHLNLQG 458 (606)
T ss_dssp EEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT-CTTCCEEECTT
T ss_pred EEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC-CCCCCEEECCC
Confidence 666666666644 44556666666666666666533 22 2566666666666666665544333222 13444555544
Q ss_pred Ccccccc------------cCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCC
Q psy3787 154 LDYHCQN------------VDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKY 219 (263)
Q Consensus 154 ~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n 219 (263)
+.+.-.. +..-..+.....+..|..+..+++|++|+++ .++.++...+.. ++.| . |++++|
T Consensus 459 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~---l~~L-~-L~L~~N 533 (606)
T 3t6q_A 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH---LKGI-Y-LNLASN 533 (606)
T ss_dssp CBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTT---CCSC-E-EECCSS
T ss_pred CCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCc---cccc-E-EECcCC
Confidence 4321100 0000000001133345668888999999999 676554433332 3368 8 999999
Q ss_pred cccccCccccccccccccccccCCceEEec
Q psy3787 220 KLDRTKTLTLCKVINIPESVYMNRPFALTY 249 (263)
Q Consensus 220 ~l~~ip~~~~~~~~~l~~~~~~~~~~~~~~ 249 (263)
+++.+|+..+..+.++..+.+.+||+.+..
T Consensus 534 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 534 HISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp CCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred cccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 999888877777788899999999987744
No 49
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.85 E-value=2.5e-21 Score=162.60 Aligned_cols=197 Identities=15% Similarity=0.129 Sum_probs=157.8
Q ss_pred CCCCCEEEeecCccCCCCcccc--CCCCCCcEEEecCCCCCCCcC-CCCC-----CCCcEEEecCCCCCCCchhhhhCCC
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLF--IDMRSLTELNLSYNQLTMLPV-CTDC-----KNLTHLLLGFNKINNMENDYFLTLT 73 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~l~~l~~-~~~~-----~~L~~L~l~~n~~~~~~~~~~~~l~ 73 (263)
+++|++|++++|++.+.....+ ..+++|++|++++|.++.+|. +..+ ++|++|++++|.+.++++..+..++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 6789999999999986333334 899999999999999997763 4444 8999999999999999988899999
Q ss_pred CccEEEeecCcCcc---ccccc--cCCCCcCEEEccCCcCCCcc---cc-ccCCCcccEEEecCCCCCCcch-HHHHhHH
Q psy3787 74 KLSLLNLKNNKISE---VSSNV--GDLINLAILDLSDNELTDVP---CE-LSSLFHLKSLFLGGNPIKTVRN-DILQDSK 143 (263)
Q Consensus 74 ~L~~L~l~~~~l~~---lp~~~--~~l~~L~~L~l~~n~l~~l~---~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~ 143 (263)
+|++|++++|++.. ++..+ ..+++|++|++++|.++.++ .. +..+++|+.|++++|.+++.++ ..+.. .
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-l 252 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW-P 252 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC-C
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh-c
Confidence 99999999999763 34444 78999999999999999543 22 4688999999999999998552 22211 3
Q ss_pred HHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcc
Q psy3787 144 RIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKL 221 (263)
Q Consensus 144 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l 221 (263)
..++.++++.+. ...+|..+. ++|++|+++ +++.+|. +.. +++|+. |++++|++
T Consensus 253 ~~L~~L~Ls~N~----------------l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~----l~~L~~-L~L~~N~l 308 (312)
T 1wwl_A 253 SQLNSLNLSFTG----------------LKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDE----LPQVGN-LSLKGNPF 308 (312)
T ss_dssp TTCCEEECTTSC----------------CSSCCSSCC--SEEEEEECCSSCCCSCCC-TTT----SCEEEE-EECTTCTT
T ss_pred CCCCEEECCCCc----------------cChhhhhcc--CCceEEECCCCCCCCChh-Hhh----CCCCCE-EeccCCCC
Confidence 467888887777 345666665 899999999 8888876 433 446999 99999988
Q ss_pred cc
Q psy3787 222 DR 223 (263)
Q Consensus 222 ~~ 223 (263)
+.
T Consensus 309 ~~ 310 (312)
T 1wwl_A 309 LD 310 (312)
T ss_dssp TC
T ss_pred CC
Confidence 75
No 50
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=1e-20 Score=177.78 Aligned_cols=209 Identities=17% Similarity=0.208 Sum_probs=100.5
Q ss_pred CCCCCEEEeecCccCCCCccc-cCCCCC-CcEEEecCCCCCCCcC-CCCC--CCCcEEEecCCC----------------
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPL-FIDMRS-LTELNLSYNQLTMLPV-CTDC--KNLTHLLLGFNK---------------- 60 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~-L~~L~l~~n~l~~l~~-~~~~--~~L~~L~l~~n~---------------- 60 (263)
+++|+.|++++|.+.. +|. +.++++ |+.|++++|.++.+|. +... ++|+.|++++|.
T Consensus 594 L~~L~~L~Ls~N~l~~--lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIEE--IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp TSEESEEECCSSCCSC--CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred CCcceEEECcCCcccc--chHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence 4566677777776663 554 666666 7777777766665553 2222 224555555554
Q ss_pred -------------CCCCchhhhhCCCCccEEEeecCcCccccccccCCC--------CcCEEEccCCcCCCcccccc--C
Q psy3787 61 -------------INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLI--------NLAILDLSDNELTDVPCELS--S 117 (263)
Q Consensus 61 -------------~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~--------~L~~L~l~~n~l~~l~~~~~--~ 117 (263)
+..++...+..+++|+.|++++|+++.+|..+.... +|+.|++++|.++.+|..+. .
T Consensus 672 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~ 751 (876)
T 4ecn_A 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT 751 (876)
T ss_dssp CCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTT
T ss_pred CCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhcc
Confidence 444444434444555555555555554444332211 45555555555555544443 4
Q ss_pred CCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--cccc
Q psy3787 118 LFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVIN 195 (263)
Q Consensus 118 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~ 195 (263)
+++|+.|++++|.++++|..+... ..|+.|+++.+.. .......+.+|..+..+++|+.|+++ .++.
T Consensus 752 l~~L~~L~Ls~N~L~~lp~~l~~L--~~L~~L~Ls~N~~---------ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~ 820 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSSFPTQPLNS--SQLKAFGIRHQRD---------AEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820 (876)
T ss_dssp CTTCCEEECCSSCCSSCCCGGGGC--TTCCEEECCCCBC---------TTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB
T ss_pred CCCcCEEEeCCCCCCccchhhhcC--CCCCEEECCCCCC---------cccccccccChHHHhcCCCCCEEECCCCCCCc
Confidence 555555555555555544433322 1333343322110 00000023344455555555555555 4455
Q ss_pred cChhHHhhcCCccceeEEEeccCCcccccCccccc
Q psy3787 196 IPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLC 230 (263)
Q Consensus 196 l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~ 230 (263)
+|..++ . +|+. |++++|++..++...++
T Consensus 821 Ip~~l~--~----~L~~-LdLs~N~l~~i~~~~~~ 848 (876)
T 4ecn_A 821 VDEKLT--P----QLYI-LDIADNPNISIDVTSVC 848 (876)
T ss_dssp CCSCCC--S----SSCE-EECCSCTTCEEECGGGH
T ss_pred cCHhhc--C----CCCE-EECCCCCCCccChHHcc
Confidence 555432 1 3555 55555555555444444
No 51
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=1.7e-20 Score=167.82 Aligned_cols=149 Identities=21% Similarity=0.206 Sum_probs=100.5
Q ss_pred cCCCCcCEEEccCCcCCC-ccccccCCCcccEEEecCCCCCCcchHHHHhH-HHHhhhhhCCCCcccccccCCCCCC---
Q psy3787 93 GDLINLAILDLSDNELTD-VPCELSSLFHLKSLFLGGNPIKTVRNDILQDS-KRIISHIKTSRLDYHCQNVDGGGMS--- 167 (263)
Q Consensus 93 ~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~--- 167 (263)
..+++|++|++++|.++. +|..++.+++|+.|++++|.+++++....... ...++.++++.+.+.-. +....+.
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~-l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD-EKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC-GGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc-cccchhccCc
Confidence 466778888888888875 57678888888888888888887543211111 34666777766654210 0000000
Q ss_pred --------CcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccccccccccc
Q psy3787 168 --------SQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPE 237 (263)
Q Consensus 168 --------~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~ 237 (263)
.....+..+..+. ++|+.|+++ +++.+|.+++.+. +|+. |++++|+++.+|...+..+.++..
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~----~L~~-L~L~~N~l~~l~~~~~~~l~~L~~ 472 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLE----ALQE-LNVASNQLKSVPDGIFDRLTSLQK 472 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCT----TCCE-EECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCC----CCCE-EECCCCcCCccCHHHhccCCcccE
Confidence 0000122333232 789999999 8889998888555 5999 999999999999876666788889
Q ss_pred ccccCCceEEec
Q psy3787 238 SVYMNRPFALTY 249 (263)
Q Consensus 238 ~~~~~~~~~~~~ 249 (263)
+.+.+||..+..
T Consensus 473 L~l~~N~~~c~c 484 (520)
T 2z7x_B 473 IWLHTNPWDCSC 484 (520)
T ss_dssp EECCSSCBCCCH
T ss_pred EECcCCCCcccC
Confidence 999999976643
No 52
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=1.7e-20 Score=173.03 Aligned_cols=237 Identities=19% Similarity=0.257 Sum_probs=162.5
Q ss_pred CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
+++++|++++|.++......|.++++|++|++++|.++.++ .+..+++|++|++++|.+..+++..|..+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 46899999999988833334889999999999999988764 3778899999999999999888878889999999999
Q ss_pred ecCcCcccc-ccccCCCCcCEEEccCCcCCCc-cccccCCCcccEEEecCCCCCCcchHHHHhH-HHHhhhhhCCCCccc
Q psy3787 81 KNNKISEVS-SNVGDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNPIKTVRNDILQDS-KRIISHIKTSRLDYH 157 (263)
Q Consensus 81 ~~~~l~~lp-~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~~l~~l~~~~~~~~ 157 (263)
++|+++.++ ..++.+++|++|++++|.++.. +..++.+++|+.|++++|.++++++..+... ...++.++++.+.+.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 999998776 5688899999999999988865 5568889999999999999988877655432 345666766655431
Q ss_pred ccc---------c---------------------------CCCCCCCcCCcccccccccccCC--cceeccc--cccccC
Q psy3787 158 CQN---------V---------------------------DGGGMSSQESTSEINIDKYKLDR--TKTLTLC--KVINIP 197 (263)
Q Consensus 158 ~~~---------~---------------------------~~~~~~~~~~~~~~~~~~~~~~~--L~~L~l~--~~~~l~ 197 (263)
-.. . ..-........+..+..+..++. |++|+++ .++.++
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 000 0 00000000001122333444433 7777777 555554
Q ss_pred hhHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCC
Q psy3787 198 ESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNR 243 (263)
Q Consensus 198 ~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~ 243 (263)
+..+.. +++|+. |++++|+++.+++..+..+.++..+.+.++
T Consensus 265 ~~~~~~---l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 265 NDSFAW---LPQLEY-FFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp TTTTTT---CTTCCE-EECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred cccccC---cccccE-eeCCCCccCccChhhhcCCCCccEEeccch
Confidence 433322 225777 777777777666555555555555555543
No 53
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=8.2e-20 Score=161.50 Aligned_cols=209 Identities=22% Similarity=0.312 Sum_probs=118.2
Q ss_pred CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
+++|+.|++++|.+.. ++.+..+++|++|++++|.+..++.+..+++|+.|++++|.+.+++ .+..+++|+.|+++
T Consensus 176 l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 176 LTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLA 251 (466)
T ss_dssp CTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECC
T ss_pred CCCCCEEECcCCcCCC--ChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch--hhhcCCCCCEEECC
Confidence 4566667777766655 4556666667777777666665555555666666666666666553 25566667777777
Q ss_pred cCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccccc
Q psy3787 82 NNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNV 161 (263)
Q Consensus 82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 161 (263)
+|.++.++. +..+++|+.|++++|.++.++. +..+++|+.|++++|.++++++ .. ....++.++++.+.+
T Consensus 252 ~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~--~l~~L~~L~L~~n~l----- 321 (466)
T 1o6v_A 252 NNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-IS--NLKNLTYLTLYFNNI----- 321 (466)
T ss_dssp SSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GG--GCTTCSEEECCSSCC-----
T ss_pred CCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hc--CCCCCCEEECcCCcC-----
Confidence 776665544 5566667777777776666554 6666677777777776666554 11 123455555555442
Q ss_pred CCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccccccccccccc
Q psy3787 162 DGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESV 239 (263)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~ 239 (263)
...++ +..+++|++|+++ .++.++ .+.. +++|+. |++++|+++.+++ ...+.++..+.
T Consensus 322 -----------~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~----l~~L~~-L~l~~n~l~~~~~--~~~l~~L~~L~ 381 (466)
T 1o6v_A 322 -----------SDISP-VSSLTKLQRLFFYNNKVSDVS-SLAN----LTNINW-LSAGHNQISDLTP--LANLTRITQLG 381 (466)
T ss_dssp -----------SCCGG-GGGCTTCCEEECCSSCCCCCG-GGTT----CTTCCE-EECCSSCCCBCGG--GTTCTTCCEEE
T ss_pred -----------CCchh-hccCccCCEeECCCCccCCch-hhcc----CCCCCE-EeCCCCccCccch--hhcCCCCCEEe
Confidence 11121 4455566666665 444442 2222 224665 6666666554443 22234444444
Q ss_pred ccCCc
Q psy3787 240 YMNRP 244 (263)
Q Consensus 240 ~~~~~ 244 (263)
+.+|+
T Consensus 382 l~~n~ 386 (466)
T 1o6v_A 382 LNDQA 386 (466)
T ss_dssp CCCEE
T ss_pred ccCCc
Confidence 44444
No 54
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=1.1e-20 Score=172.06 Aligned_cols=236 Identities=17% Similarity=0.115 Sum_probs=143.8
Q ss_pred CCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCc--hhhhhCCCCccEEEee
Q psy3787 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNME--NDYFLTLTKLSLLNLK 81 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~l~ 81 (263)
+|++|++++|.+.. +|.+ .+++|+.|++++|.......+..+++|++|++++|.+.... +..+..+++|++|+++
T Consensus 308 ~L~~L~l~~n~l~~--lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~ 384 (606)
T 3vq2_A 308 KWQSLSIIRCQLKQ--FPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384 (606)
T ss_dssp CCSEEEEESCCCSS--CCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECC
T ss_pred cCCEEEcccccCcc--cccC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECC
Confidence 34444444444422 3333 44444444444442221113445666777777777666542 5557778888888888
Q ss_pred cCcCccccccccCCCCcCEEEccCCcCCCcc--ccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccc
Q psy3787 82 NNKISEVSSNVGDLINLAILDLSDNELTDVP--CELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQ 159 (263)
Q Consensus 82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 159 (263)
+|.++.+|..+..+++|+.|++++|.+...+ ..+..+++|+.|++++|.+.+..+..+.. ...++.++++++.+.-.
T Consensus 385 ~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~ 463 (606)
T 3vq2_A 385 FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG-LTSLNTLKMAGNSFKDN 463 (606)
T ss_dssp SCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT-CTTCCEEECTTCEEGGG
T ss_pred CCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC-CCCCCEEECCCCcCCCc
Confidence 8888877777778888888888888777653 35777888888888888877744433222 23556666655543210
Q ss_pred ----------ccCCCCCCCcCCcccccccccccCCcceeccc--ccccc-ChhHHhhcCCccceeEEEeccCCcccccCc
Q psy3787 160 ----------NVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINI-PESVYMRGMSSQECTIEINIDKYKLDRTKT 226 (263)
Q Consensus 160 ----------~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l-~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~ 226 (263)
.+..-..+.....+..+..+..+++|++|+++ +++.+ |..+..+ ++|+. |++++|+++.+|.
T Consensus 464 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l----~~L~~-L~l~~N~l~~~p~ 538 (606)
T 3vq2_A 464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL----YSLST-LDCSFNRIETSKG 538 (606)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTC----TTCCE-EECTTSCCCCEES
T ss_pred chHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCC----CcCCE-EECCCCcCcccCH
Confidence 00000001111123345567788888888888 67666 4333333 35998 9999999998887
Q ss_pred ccccccc-ccccccccCCceEEec
Q psy3787 227 LTLCKVI-NIPESVYMNRPFALTY 249 (263)
Q Consensus 227 ~~~~~~~-~l~~~~~~~~~~~~~~ 249 (263)
. ...+. ++..+.+.+||..+..
T Consensus 539 ~-~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 539 I-LQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp C-GGGSCTTCCEEECCSCCCCCSS
T ss_pred h-HhhhcccCcEEEccCCCcccCC
Confidence 6 44454 4778889999977643
No 55
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=3.7e-20 Score=155.25 Aligned_cols=196 Identities=21% Similarity=0.257 Sum_probs=163.0
Q ss_pred ccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcC
Q psy3787 20 LPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLA 99 (263)
Q Consensus 20 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~ 99 (263)
......+++|+.|++++|.+..++.+..+++|++|++++|.+..+++ +..+++|++|++++|+++.++ .+..+++|+
T Consensus 34 ~~~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 34 TVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIK 110 (308)
T ss_dssp EECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred eecHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCC
Confidence 34466789999999999999999999999999999999999998877 889999999999999999886 578899999
Q ss_pred EEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccc
Q psy3787 100 ILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDK 179 (263)
Q Consensus 100 ~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (263)
+|++++|.++.++. +..+++|+.|++++|.+++++. ... ...++.++++.+. ...++. +
T Consensus 111 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~--l~~L~~L~l~~n~----------------l~~~~~-l 169 (308)
T 1h6u_A 111 TLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAG--LTNLQYLSIGNAQ----------------VSDLTP-L 169 (308)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGG--CTTCCEEECCSSC----------------CCCCGG-G
T ss_pred EEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccC--CCCccEEEccCCc----------------CCCChh-h
Confidence 99999999998874 8999999999999999999876 111 3467778887766 333444 8
Q ss_pred cccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCCceEE
Q psy3787 180 YKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFAL 247 (263)
Q Consensus 180 ~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~ 247 (263)
..+++|+.|+++ .++.++. +.. +++|+. |++++|+++.+++ ...+.++..+.+.+|+...
T Consensus 170 ~~l~~L~~L~l~~n~l~~~~~-l~~----l~~L~~-L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKISDISP-LAS----LPNLIE-VHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGG-GGG----CTTCCE-EECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cCCCCCCEEECCCCccCcChh-hcC----CCCCCE-EEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 889999999999 7888775 333 446999 9999999998885 3446777788888887544
No 56
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=2.7e-20 Score=168.11 Aligned_cols=137 Identities=26% Similarity=0.312 Sum_probs=121.2
Q ss_pred CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
++++.|++++|.++......|.++++|++|++++|.++.++ .+..+++|++|++++|.+..+++.+|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 36899999999998833334999999999999999999765 4889999999999999999998888999999999999
Q ss_pred ecCcCccccc-cccCCCCcCEEEccCCcCCC--ccccccCCCcccEEEecCCCCCCcchHHH
Q psy3787 81 KNNKISEVSS-NVGDLINLAILDLSDNELTD--VPCELSSLFHLKSLFLGGNPIKTVRNDIL 139 (263)
Q Consensus 81 ~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 139 (263)
++|+++.++. .++.+++|++|++++|.+.. +|..++.+++|+.|++++|.++++++..+
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~ 169 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc
Confidence 9999998876 58899999999999999985 68889999999999999999998765543
No 57
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=5.8e-20 Score=162.08 Aligned_cols=215 Identities=23% Similarity=0.231 Sum_probs=144.0
Q ss_pred CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
+++|++|++++|.++. +|.+..+++|++|++++|.++.++ +..+++|++|++++|.+++++ +..+++|++|+++
T Consensus 41 l~~L~~L~Ls~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCD 114 (457)
T ss_dssp HTTCCEEECCSSCCCC--CTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECC
T ss_pred cCCCCEEEccCCCccc--ChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECC
Confidence 5678899999998887 567888889999999999888876 778888888898888888763 6778888888888
Q ss_pred cCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCC-CCCcchHHHHhHHHHhhhhhCCCCcccccc
Q psy3787 82 NNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNP-IKTVRNDILQDSKRIISHIKTSRLDYHCQN 160 (263)
Q Consensus 82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 160 (263)
+|+++.+| ++.+++|++|++++|.++.++ ++.+++|+.+++++|. +..++. .. ...++.++++.+.+.-
T Consensus 115 ~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~--~~--l~~L~~L~ls~n~l~~-- 184 (457)
T 3bz5_A 115 TNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDV--TP--QTQLTTLDCSFNKITE-- 184 (457)
T ss_dssp SSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCC--TT--CTTCCEEECCSSCCCC--
T ss_pred CCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccccc--cc--CCcCCEEECCCCccce--
Confidence 88888775 677888888888888887763 5666666666666663 333321 01 2234444444443210
Q ss_pred cCCCCCCCcCC----------cccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccc
Q psy3787 161 VDGGGMSSQES----------TSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLT 228 (263)
Q Consensus 161 ~~~~~~~~~~~----------~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~ 228 (263)
..+..... ...+ .+..+++|++|+++ +++.+| +.. +++|+. |++++|+++.+|...
T Consensus 185 ---l~l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ip--~~~----l~~L~~-L~l~~N~l~~~~~~~ 252 (457)
T 3bz5_A 185 ---LDVSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID--VTP----LTQLTY-FDCSVNPLTELDVST 252 (457)
T ss_dssp ---CCCTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCC--CTT----CTTCSE-EECCSSCCSCCCCTT
T ss_pred ---eccccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccccC--ccc----cCCCCE-EEeeCCcCCCcCHHH
Confidence 00000000 1122 36777888888888 777776 333 335888 999999888877654
Q ss_pred ccccc-------ccccccccCCc
Q psy3787 229 LCKVI-------NIPESVYMNRP 244 (263)
Q Consensus 229 ~~~~~-------~l~~~~~~~~~ 244 (263)
+..+. ++..+.+.+|+
T Consensus 253 l~~L~~L~l~~n~L~~L~l~~n~ 275 (457)
T 3bz5_A 253 LSKLTTLHCIQTDLLEIDLTHNT 275 (457)
T ss_dssp CTTCCEEECTTCCCSCCCCTTCT
T ss_pred CCCCCEEeccCCCCCEEECCCCc
Confidence 43333 33445555554
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=3.3e-20 Score=167.53 Aligned_cols=224 Identities=17% Similarity=0.181 Sum_probs=161.6
Q ss_pred CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcC---------------------CCCCCCCcEEEecCC
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPV---------------------CTDCKNLTHLLLGFN 59 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~---------------------~~~~~~L~~L~l~~n 59 (263)
+++|+.|++++|.+.. +|. +..+ +|+.|++++|.+..+|. ...+++|++|++++|
T Consensus 281 l~~L~~L~l~~~~l~~--l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n 357 (570)
T 2z63_A 281 LTNVSSFSLVSVTIER--VKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357 (570)
T ss_dssp GTTCSEEEEESCEECS--CCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSS
T ss_pred cCcccEEEecCccchh--hhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCC
Confidence 4667788888887775 555 5555 77777777776665442 145677777777777
Q ss_pred CCCCCc--hhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCCcCCCcc--ccccCCCcccEEEecCCCCCCcc
Q psy3787 60 KINNME--NDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP--CELSSLFHLKSLFLGGNPIKTVR 135 (263)
Q Consensus 60 ~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~--~~~~~l~~L~~L~l~~n~l~~~~ 135 (263)
.+.... +..+..+++|++|++++|.++.++..+..+++|++|++++|.+...+ ..+..+++|+.|++++|.+.+..
T Consensus 358 ~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 437 (570)
T 2z63_A 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437 (570)
T ss_dssp CCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC
T ss_pred ccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc
Confidence 776553 45577778888888888888777666777888888888888777553 24777888888888888777754
Q ss_pred hHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCc-ccccccccccCCcceeccc--ccccc-ChhHHhhcCCcccee
Q psy3787 136 NDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQEST-SEINIDKYKLDRTKTLTLC--KVINI-PESVYMRGMSSQECT 211 (263)
Q Consensus 136 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~l~--~~~~l-~~~~~~~~~~~~~L~ 211 (263)
+..+.. ...++.++++.+.+ . +.+|..+..+++|++|+++ .++.+ |..+..+. +|+
T Consensus 438 ~~~~~~-l~~L~~L~l~~n~l---------------~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~----~L~ 497 (570)
T 2z63_A 438 NGIFNG-LSSLEVLKMAGNSF---------------QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS----SLQ 497 (570)
T ss_dssp TTTTTT-CTTCCEEECTTCEE---------------GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT----TCC
T ss_pred hhhhhc-CCcCcEEECcCCcC---------------ccccchhhhhcccCCCEEECCCCccccCChhhhhccc----CCC
Confidence 443332 23566666666653 2 3467778999999999999 77776 44444333 699
Q ss_pred EEEeccCCcccccCccccccccccccccccCCceEEec
Q psy3787 212 IEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFALTY 249 (263)
Q Consensus 212 ~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~~~ 249 (263)
. |++++|+++.+|+..+..+.++..+.+.+||..+..
T Consensus 498 ~-L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 498 V-LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp E-EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred E-EeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence 9 999999999998877777888899999999977654
No 59
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=1.5e-19 Score=159.45 Aligned_cols=223 Identities=20% Similarity=0.167 Sum_probs=136.2
Q ss_pred CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
+++|++|++++|+++. ++ +..+++|++|++++|.++.++ +..+++|++|++++|.+++++ +..+++|++|+++
T Consensus 63 l~~L~~L~Ls~n~l~~--~~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 63 LTGLTKLICTSNNITT--LD-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCA 135 (457)
T ss_dssp CTTCSEEECCSSCCSC--CC-CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECT
T ss_pred cCCCCEEEccCCcCCe--Ec-cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECC
Confidence 5778888888888887 44 778888888888888888775 777888888888888888763 6678888888888
Q ss_pred cCcCccccccccCCCCcCEEEccCC-cCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccc
Q psy3787 82 NNKISEVSSNVGDLINLAILDLSDN-ELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQN 160 (263)
Q Consensus 82 ~~~l~~lp~~~~~l~~L~~L~l~~n-~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 160 (263)
+|+++.++ ++.+++|+++++++| .+..+ .++.+++|+.|++++|.+++++. .. ...++.++++.+.+.-..
T Consensus 136 ~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~l--~~--l~~L~~L~l~~N~l~~~~ 207 (457)
T 3bz5_A 136 RNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELDV--SQ--NKLLNRLNCDTNNITKLD 207 (457)
T ss_dssp TSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCCC--TT--CTTCCEEECCSSCCSCCC
T ss_pred CCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceecc--cc--CCCCCEEECcCCcCCeec
Confidence 88887664 556666666666666 33333 34555666666666666666541 11 123344444333321100
Q ss_pred ------cCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccc----
Q psy3787 161 ------VDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLT---- 228 (263)
Q Consensus 161 ------~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~---- 228 (263)
+..-..... ....+| +..+++|+.|+++ .++.+|.. .+ ++|+. +++++|+++.+.-..
T Consensus 208 l~~l~~L~~L~Ls~N-~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~--~l----~~L~~-L~l~~n~L~~L~l~~n~~~ 277 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVNPLTELDVS--TL----SKLTT-LHCIQTDLLEIDLTHNTQL 277 (457)
T ss_dssp CTTCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCSCCCCT--TC----TTCCE-EECTTCCCSCCCCTTCTTC
T ss_pred cccCCCCCEEECcCC-cccccC--ccccCCCCEEEeeCCcCCCcCHH--HC----CCCCE-EeccCCCCCEEECCCCccC
Confidence 000000000 033344 7889999999999 77777632 22 23555 555555544332211
Q ss_pred ----cccccccccccccCCceEEec
Q psy3787 229 ----LCKVINIPESVYMNRPFALTY 249 (263)
Q Consensus 229 ----~~~~~~l~~~~~~~~~~~~~~ 249 (263)
...+.++..+.+.+|+.....
T Consensus 278 ~~~~~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 278 IYFQAEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp CEEECTTCTTCCCCCCTTCTTCCEE
T ss_pred CcccccccccCCEEECCCCccccee
Confidence 123466777788888754443
No 60
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.83 E-value=1.7e-19 Score=159.51 Aligned_cols=225 Identities=21% Similarity=0.314 Sum_probs=126.0
Q ss_pred CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
+++|++|++++|.+.. ++++.++++|++|++++|.+..++.+..+++|++|++++|.+.++++ +..+++|++|+++
T Consensus 67 l~~L~~L~Ls~n~l~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 142 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 142 (466)
T ss_dssp CTTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEE
T ss_pred hcCCCEEECCCCccCC--chhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECC
Confidence 5677777887777776 45577777777777777777766667777778888888777777654 6677777777777
Q ss_pred cCcCccccc--------------------cccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHh
Q psy3787 82 NNKISEVSS--------------------NVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQD 141 (263)
Q Consensus 82 ~~~l~~lp~--------------------~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 141 (263)
+|.++.++. .+..+++|++|++++|.+..++ .+..+++|+.|++++|.+.++++ ...
T Consensus 143 ~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~- 219 (466)
T 1o6v_A 143 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-LGI- 219 (466)
T ss_dssp EEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GGG-
T ss_pred CCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc-ccc-
Confidence 777665542 1334455666666666655554 35556666666666666665443 111
Q ss_pred HHHHhhhhhCCCCcccc-------cccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeE
Q psy3787 142 SKRIISHIKTSRLDYHC-------QNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTI 212 (263)
Q Consensus 142 ~~~~l~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~ 212 (263)
...++.++++.+.+.- ..+..-...... ....++ +..+++|++|+++ .++.++. +.. +++|+.
T Consensus 220 -l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~----l~~L~~ 291 (466)
T 1o6v_A 220 -LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGANQISNISP-LAG----LTALTN 291 (466)
T ss_dssp -CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTT----CTTCSE
T ss_pred -cCCCCEEECCCCCcccchhhhcCCCCCEEECCCCc-cccchh-hhcCCCCCEEECCCCccCcccc-ccC----CCccCe
Confidence 2234444444433200 000000000000 111111 4555666666666 4555443 222 334666
Q ss_pred EEeccCCcccccCccccccccccccccccCCc
Q psy3787 213 EINIDKYKLDRTKTLTLCKVINIPESVYMNRP 244 (263)
Q Consensus 213 ~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~ 244 (263)
|++++|+++.+++ ...+.++..+.+.+|+
T Consensus 292 -L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 292 -LELNENQLEDISP--ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp -EECCSSCCSCCGG--GGGCTTCSEEECCSSC
T ss_pred -EEcCCCcccCchh--hcCCCCCCEEECcCCc
Confidence 6666666666554 2234555555555554
No 61
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.83 E-value=6.9e-20 Score=163.95 Aligned_cols=67 Identities=9% Similarity=0.007 Sum_probs=47.0
Q ss_pred ccccccccccCCcceeccc--cccccCh---hHHhhcCCccceeEEEeccCCcccc-cCccccccccccccccccCCc
Q psy3787 173 SEINIDKYKLDRTKTLTLC--KVINIPE---SVYMRGMSSQECTIEINIDKYKLDR-TKTLTLCKVINIPESVYMNRP 244 (263)
Q Consensus 173 ~~~~~~~~~~~~L~~L~l~--~~~~l~~---~~~~~~~~~~~L~~~L~ls~n~l~~-ip~~~~~~~~~l~~~~~~~~~ 244 (263)
+..|..+..+++|++|+++ .++.++. .+.. +++|+. |++++|+++. +|...+..+.++..+.+.+|.
T Consensus 338 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~----l~~L~~-L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ----MKSLQQ-LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT----CTTCCE-EECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred hhhhhhhccCCCCCEEEccCCccCccccchHHHhh----CCCCCE-EECCCCcCCcccccchhccCccCCEEECcCCC
Confidence 3466778889999999999 7765443 3333 346998 9999999986 887655555566666666664
No 62
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=4.8e-20 Score=174.07 Aligned_cols=109 Identities=31% Similarity=0.475 Sum_probs=64.5
Q ss_pred CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
++|+.|++++|.+.......+..+++|+.|++++|.+..++ .+..+++|++|++++|.+.++.+..+..+++|+.|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 45666666666665522222666666666666666666432 3556666666666666666665555666666666666
Q ss_pred ecCcCccccc-cccCCCCcCEEEccCCcCCCc
Q psy3787 81 KNNKISEVSS-NVGDLINLAILDLSDNELTDV 111 (263)
Q Consensus 81 ~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l 111 (263)
++|.++.++. .+..+++|++|++++|.++.+
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i 377 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred CCCCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence 6666665533 355566666666666655543
No 63
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.82 E-value=2.7e-20 Score=169.46 Aligned_cols=234 Identities=17% Similarity=0.102 Sum_probs=175.7
Q ss_pred CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
+++|+.|++++|.+.. ++.+..+++|+.|++++|.+..+|.+ .+++|+.|++++|...... .+..+++|++|+++
T Consensus 284 l~~L~~L~l~~~~~~~--l~~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 358 (606)
T 3vq2_A 284 LANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLS 358 (606)
T ss_dssp GTTCSEEEEESCCCCC--CCCCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECC
T ss_pred CCCCCEEEecCccchh--hhhccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccch--hhccCCCCCEEECc
Confidence 5789999999999977 66889999999999999999989988 8999999999999554433 36789999999999
Q ss_pred cCcCccc---cccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcch-HHHHhHHHHhhhhhCCCCccc
Q psy3787 82 NNKISEV---SSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRN-DILQDSKRIISHIKTSRLDYH 157 (263)
Q Consensus 82 ~~~l~~l---p~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~l~~l~~~~~~~~ 157 (263)
+|.++.+ |..+..+++|++|++++|.+..+|..+..+++|+.|++++|.+.++++ ..+.. ...++.++++.+.+.
T Consensus 359 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~ 437 (606)
T 3vq2_A 359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS-LEKLLYLDISYTNTK 437 (606)
T ss_dssp SSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTT-CTTCCEEECTTSCCE
T ss_pred CCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhc-cccCCEEECcCCCCC
Confidence 9999865 677889999999999999999898889999999999999999988654 32222 346777777666541
Q ss_pred ccc---------cCCCCCCCcCCcc-cccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccC
Q psy3787 158 CQN---------VDGGGMSSQESTS-EINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTK 225 (263)
Q Consensus 158 ~~~---------~~~~~~~~~~~~~-~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip 225 (263)
-.. +..-........+ ..|..+..+++|++|+++ .++.+++..+.. +++|+. |++++|+++.++
T Consensus 438 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---l~~L~~-L~Ls~N~l~~~~ 513 (606)
T 3vq2_A 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT---LHRLQL-LNMSHNNLLFLD 513 (606)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT---CTTCCE-EECCSSCCSCEE
T ss_pred ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcc---cccCCE-EECCCCcCCCcC
Confidence 110 0000000110122 256667888888999888 676665443322 336998 999999988876
Q ss_pred ccccccccccccccccCCce
Q psy3787 226 TLTLCKVINIPESVYMNRPF 245 (263)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~ 245 (263)
+..+..+.++..+.+.+|+.
T Consensus 514 ~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 514 SSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp GGGTTTCTTCCEEECTTSCC
T ss_pred HHHccCCCcCCEEECCCCcC
Confidence 66666667777777777763
No 64
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=171.20 Aligned_cols=136 Identities=28% Similarity=0.259 Sum_probs=116.5
Q ss_pred CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCC-CC-c-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEE
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT-ML-P-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLL 78 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l-~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 78 (263)
.++++.|++++|.++......|.++++|++|++++|... .+ | .+..+++|++|++++|.+..+.+..|..+++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 467999999999998743344999999999999999543 44 3 58999999999999999999988889999999999
Q ss_pred EeecCcCcc-cccc--ccCCCCcCEEEccCCcCCCc--cccccCCCcccEEEecCCCCCCcchH
Q psy3787 79 NLKNNKISE-VSSN--VGDLINLAILDLSDNELTDV--PCELSSLFHLKSLFLGGNPIKTVRND 137 (263)
Q Consensus 79 ~l~~~~l~~-lp~~--~~~l~~L~~L~l~~n~l~~l--~~~~~~l~~L~~L~l~~n~l~~~~~~ 137 (263)
++++|.++. +|.. +..+++|++|++++|.+.++ +..++.+++|+.|++++|.++++.+.
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence 999999984 5554 88999999999999999875 34689999999999999999885443
No 65
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.82 E-value=8.2e-20 Score=150.41 Aligned_cols=191 Identities=20% Similarity=0.273 Sum_probs=153.4
Q ss_pred eecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCcccc
Q psy3787 10 LSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVS 89 (263)
Q Consensus 10 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp 89 (263)
+..+.+.. ......+++|+.|++++|.+..++.+..+++|++|++++|.+.+++ .+..+++|++|++++|.++.++
T Consensus 26 l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~ 101 (272)
T 3rfs_A 26 LKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLP 101 (272)
T ss_dssp HTCSCTTS--EECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCC
T ss_pred hcCccccc--ccccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccC
Confidence 34444443 4447788999999999999999999999999999999999998864 4889999999999999999876
Q ss_pred cc-ccCCCCcCEEEccCCcCCCcccc-ccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCC
Q psy3787 90 SN-VGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMS 167 (263)
Q Consensus 90 ~~-~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 167 (263)
.. +..+++|++|++++|.++.++.. ++.+++|+.|++++|.++++++..+... ..++.++++.+.+
T Consensus 102 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l----------- 169 (272)
T 3rfs_A 102 NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL-TNLTELDLSYNQL----------- 169 (272)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCC-----------
T ss_pred hhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccC-ccCCEEECCCCCc-----------
Confidence 54 68999999999999999988654 7899999999999999999887654332 4677787777763
Q ss_pred CcCCcccccc-cccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCccc-ccC
Q psy3787 168 SQESTSEINI-DKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLD-RTK 225 (263)
Q Consensus 168 ~~~~~~~~~~-~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~-~ip 225 (263)
..+++ .+..+++|++|+++ .++.+++..+.. +++|+. |++++|.+. ..|
T Consensus 170 -----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---l~~L~~-L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 170 -----QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR---LTSLQY-IWLHDNPWDCTCP 222 (272)
T ss_dssp -----CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT---CTTCCE-EECCSSCBCCCTT
T ss_pred -----CccCHHHhcCCccCCEEECCCCcCCccCHHHHhC---CcCCCE-EEccCCCccccCc
Confidence 23333 36788999999999 788777765433 336998 999999876 444
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=3.3e-21 Score=162.26 Aligned_cols=190 Identities=22% Similarity=0.203 Sum_probs=156.1
Q ss_pred CCCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 1 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
.+++|+.|++++|.+.. .+++..+++|++|++++|.++.++. .++|++|++++|.+.++++. .+++|++|++
T Consensus 56 ~l~~L~~L~Ls~n~l~~--~~~~~~l~~L~~L~Ls~n~l~~l~~---~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l 127 (317)
T 3o53_A 56 PFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQELLV---GPSIETLHAANNNISRVSCS---RGQGKKNIYL 127 (317)
T ss_dssp TCTTCCEEECTTSCCEE--EEEETTCTTCCEEECCSSEEEEEEE---CTTCCEEECCSSCCSEEEEC---CCSSCEEEEC
T ss_pred CCCcCCEEECCCCcCCc--chhhhhcCCCCEEECcCCccccccC---CCCcCEEECCCCccCCcCcc---ccCCCCEEEC
Confidence 36789999999999987 5669999999999999999887663 37899999999999887654 3678999999
Q ss_pred ecCcCccccc-cccCCCCcCEEEccCCcCCCcc-ccc-cCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccc
Q psy3787 81 KNNKISEVSS-NVGDLINLAILDLSDNELTDVP-CEL-SSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYH 157 (263)
Q Consensus 81 ~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l~-~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 157 (263)
++|+++.++. .+..+++|++|++++|.++.++ ..+ ..+++|+.|++++|.+++++.... ...++.++++.+.
T Consensus 128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---l~~L~~L~Ls~N~-- 202 (317)
T 3o53_A 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV---FAKLKTLDLSSNK-- 202 (317)
T ss_dssp CSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC---CTTCCEEECCSSC--
T ss_pred CCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccc---cccCCEEECCCCc--
Confidence 9999997754 6788899999999999998763 444 478999999999999998754432 3467788887777
Q ss_pred ccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCccc
Q psy3787 158 CQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLD 222 (263)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~ 222 (263)
...+++.+..+++|++|+++ .++.+|..+... ++|+. |++++|+++
T Consensus 203 --------------l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l----~~L~~-L~l~~N~~~ 250 (317)
T 3o53_A 203 --------------LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFS----QNLEH-FDLRGNGFH 250 (317)
T ss_dssp --------------CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCC----TTCCE-EECTTCCCB
T ss_pred --------------CCcchhhhcccCcccEEECcCCcccchhhHhhcC----CCCCE-EEccCCCcc
Confidence 45677778889999999999 888888765443 35999 999999987
No 67
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=2e-19 Score=161.92 Aligned_cols=194 Identities=16% Similarity=0.216 Sum_probs=142.9
Q ss_pred CCCcEEEecCCCCCCCcC--CCCCCCCcEEEecCCCCCCCch---hhhhCCCCccEEEeecCcCcccc---ccccCCCCc
Q psy3787 27 RSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNMEN---DYFLTLTKLSLLNLKNNKISEVS---SNVGDLINL 98 (263)
Q Consensus 27 ~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~~~~l~~lp---~~~~~l~~L 98 (263)
++|+.|++++|.+..+|. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|+++.++ ..+..+++|
T Consensus 310 ~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L 389 (549)
T 2z81_A 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389 (549)
T ss_dssp TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC
T ss_pred ccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC
Confidence 467777777777776663 2467788888888888775432 22566778888888888887665 346777888
Q ss_pred CEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCccccccc
Q psy3787 99 AILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINID 178 (263)
Q Consensus 99 ~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (263)
++|++++|.++.+|..++.+++|+.|++++|.++.++..+. ..++.++++.+.+ ...
T Consensus 390 ~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~----~~L~~L~Ls~N~l----------------~~~--- 446 (549)
T 2z81_A 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP----QTLEVLDVSNNNL----------------DSF--- 446 (549)
T ss_dssp CEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSC----TTCSEEECCSSCC----------------SCC---
T ss_pred CEEECCCCCCccCChhhcccccccEEECCCCCcccccchhc----CCceEEECCCCCh----------------hhh---
Confidence 88888888888888777788888888888888877765432 2456677666653 212
Q ss_pred ccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCCceEEec
Q psy3787 179 KYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFALTY 249 (263)
Q Consensus 179 ~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~~~ 249 (263)
+..+++|++|+++ +++.+|.. .. +++|+. |++++|+++.+|+..+..+.++..+.+.+||+.+..
T Consensus 447 ~~~l~~L~~L~Ls~N~l~~ip~~-~~----l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 447 SLFLPRLQELYISRNKLKTLPDA-SL----FPVLLV-MKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp CCCCTTCCEEECCSSCCSSCCCG-GG----CTTCCE-EECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred cccCChhcEEECCCCccCcCCCc-cc----CccCCE-EecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence 2567899999999 88888874 22 346999 999999999988877777888889999999976543
No 68
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=7.7e-19 Score=142.87 Aligned_cols=129 Identities=27% Similarity=0.378 Sum_probs=97.7
Q ss_pred CCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 4 HLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
..++++++++.++. +|. +. +.++.|++++|.+..++ .+..+++|++|++++|.+.++++..+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~~--~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDS--VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSS--CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCccc--cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 35677888887776 554 33 57888888888887665 3777888888888888888877777778888888888
Q ss_pred ecCcCccccc-cccCCCCcCEEEccCCcCCCcccc-ccCCCcccEEEecCCCCCCcch
Q psy3787 81 KNNKISEVSS-NVGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRN 136 (263)
Q Consensus 81 ~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~l~~~~~ 136 (263)
++|+++.++. .+..+++|++|++++|.++.++.. +..+++|+.|++++|.+++++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 148 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence 8888887654 457778888888888888877654 6778888888888887777654
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=5.6e-19 Score=160.84 Aligned_cols=212 Identities=20% Similarity=0.206 Sum_probs=102.6
Q ss_pred CCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecC
Q psy3787 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNN 83 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 83 (263)
+|+.|++++|.++. +|. .+++|++|++++|.++.+|. .+++|++|++++|.+..++. .+++|+.|++++|
T Consensus 62 ~L~~L~L~~N~l~~--lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N 131 (622)
T 3g06_A 62 HITTLVIPDNNLTS--LPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGN 131 (622)
T ss_dssp TCSEEEECSCCCSC--CCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSS
T ss_pred CCcEEEecCCCCCC--CCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCC
Confidence 45555555555554 443 34555555555555555554 44555555555555555433 2344555555555
Q ss_pred cCccccccccCCCCcCEEEccCCcCCCcccccc-----------------CCCcccEEEecCCCCCCcchHHHHhHHHHh
Q psy3787 84 KISEVSSNVGDLINLAILDLSDNELTDVPCELS-----------------SLFHLKSLFLGGNPIKTVRNDILQDSKRII 146 (263)
Q Consensus 84 ~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~-----------------~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l 146 (263)
+++.+|.. +++|++|++++|.++.+|..+. .+++|+.|++++|.++++|... ..+
T Consensus 132 ~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~-----~~L 203 (622)
T 3g06_A 132 QLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLP-----SEL 203 (622)
T ss_dssp CCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCC-----TTC
T ss_pred CCCcCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCcc-----chh
Confidence 55544442 2445555555555554432221 1244555555555555544321 122
Q ss_pred hhhhCCCCccccc-----ccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCC
Q psy3787 147 SHIKTSRLDYHCQ-----NVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKY 219 (263)
Q Consensus 147 ~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n 219 (263)
..+++..+.+... .+..-..+.. ....+| ..+++|+.|+++ .++.+|. . +++|+. |++++|
T Consensus 204 ~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~----~~~L~~-L~Ls~N 271 (622)
T 3g06_A 204 YKLWAYNNRLTSLPALPSGLKELIVSGN-RLTSLP---VLPSELKELMVSGNRLTSLPM---L----PSGLLS-LSVYRN 271 (622)
T ss_dssp CEEECCSSCCSSCCCCCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC---C----CTTCCE-EECCSS
T ss_pred hEEECcCCcccccCCCCCCCCEEEccCC-ccCcCC---CCCCcCcEEECCCCCCCcCCc---c----cccCcE-EeCCCC
Confidence 2332222221000 0000000000 012222 334667777777 6666665 1 225777 888888
Q ss_pred cccccCccccccccccccccccCCceE
Q psy3787 220 KLDRTKTLTLCKVINIPESVYMNRPFA 246 (263)
Q Consensus 220 ~l~~ip~~~~~~~~~l~~~~~~~~~~~ 246 (263)
+|+.+|.. +..+.++..+.+.+|+..
T Consensus 272 ~L~~lp~~-l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 272 QLTRLPES-LIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CCCSCCGG-GGGSCTTCEEECCSCCCC
T ss_pred CCCcCCHH-HhhccccCEEEecCCCCC
Confidence 77777653 445566667777777643
No 70
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=6.5e-20 Score=153.79 Aligned_cols=217 Identities=16% Similarity=0.152 Sum_probs=160.7
Q ss_pred CCEEEeecCccCCCCccc---cCCCCCCcEEEecCCCCCCC-c-CC--CCCCCCcEEEecCCCCCCCch----hhhhCCC
Q psy3787 5 LKTLDLSHNKLVSDSLPL---FIDMRSLTELNLSYNQLTML-P-VC--TDCKNLTHLLLGFNKINNMEN----DYFLTLT 73 (263)
Q Consensus 5 L~~L~l~~n~~~~~~~~~---~~~l~~L~~L~l~~n~l~~l-~-~~--~~~~~L~~L~l~~n~~~~~~~----~~~~~l~ 73 (263)
++.+.+.++.+....+.. +..+++|++|++++|.+... | .+ ..+++|++|++++|.+....+ ..+..++
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~ 145 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP 145 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence 456666666554322221 33456799999999998843 3 34 788999999999999886432 3445788
Q ss_pred CccEEEeecCcCcccc-ccccCCCCcCEEEccCCcCCC---ccc--cccCCCcccEEEecCCCCCCcchHHHHh--HHHH
Q psy3787 74 KLSLLNLKNNKISEVS-SNVGDLINLAILDLSDNELTD---VPC--ELSSLFHLKSLFLGGNPIKTVRNDILQD--SKRI 145 (263)
Q Consensus 74 ~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~n~l~~---l~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~~~ 145 (263)
+|++|++++|+++.++ ..++.+++|++|++++|.+.. ++. .++.+++|++|++++|.++.++...... ....
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~ 225 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQ 225 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCC
T ss_pred CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCC
Confidence 9999999999998665 568899999999999998764 432 2478889999999999998776543322 1356
Q ss_pred hhhhhCCCCcccccccCCCCCCCcCCccccccccccc---CCcceeccc--cccccChhHHhhcCCccceeEEEeccCCc
Q psy3787 146 ISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKL---DRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYK 220 (263)
Q Consensus 146 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~ 220 (263)
+++|+++.+.+ .+..|..+..+ ++|++|+++ .++.+|..++ . +|+. |++++|+
T Consensus 226 L~~L~Ls~N~l---------------~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~----~L~~-L~Ls~N~ 283 (310)
T 4glp_A 226 PHSLDLSHNSL---------------RATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--A----KLRV-LDLSSNR 283 (310)
T ss_dssp CSSEECTTSCC---------------CCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--S----CCSC-EECCSCC
T ss_pred CCEEECCCCCC---------------CccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--C----CCCE-EECCCCc
Confidence 77888877774 23335555555 799999999 8889988764 2 5999 9999999
Q ss_pred ccccCccccccccccccccccCCce
Q psy3787 221 LDRTKTLTLCKVINIPESVYMNRPF 245 (263)
Q Consensus 221 l~~ip~~~~~~~~~l~~~~~~~~~~ 245 (263)
|+.+|.. ..+.++..+.+.+|+.
T Consensus 284 l~~~~~~--~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 284 LNRAPQP--DELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCSCCCT--TSCCCCSCEECSSTTT
T ss_pred CCCCchh--hhCCCccEEECcCCCC
Confidence 9988763 3457788888988874
No 71
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=3e-20 Score=155.83 Aligned_cols=196 Identities=15% Similarity=0.094 Sum_probs=156.7
Q ss_pred CCCCEEEeecCccCCCCcccc--CCCCCCcEEEecCCCCCCC-c-----CCCCCCCCcEEEecCCCCCCCchhhhhCCCC
Q psy3787 3 SHLKTLDLSHNKLVSDSLPLF--IDMRSLTELNLSYNQLTML-P-----VCTDCKNLTHLLLGFNKINNMENDYFLTLTK 74 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~l~~l-~-----~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 74 (263)
++|++|++++|.+.......+ ..+++|++|++++|.+... + .+..+++|++|++++|.+..+++..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 569999999999987433445 8899999999999999852 2 2356899999999999999999888999999
Q ss_pred ccEEEeecCcCcc---ccc--cccCCCCcCEEEccCCcCCCcccc----ccCCCcccEEEecCCCCCCc-chHHHHhH-H
Q psy3787 75 LSLLNLKNNKISE---VSS--NVGDLINLAILDLSDNELTDVPCE----LSSLFHLKSLFLGGNPIKTV-RNDILQDS-K 143 (263)
Q Consensus 75 L~~L~l~~~~l~~---lp~--~~~~l~~L~~L~l~~n~l~~l~~~----~~~l~~L~~L~l~~n~l~~~-~~~~~~~~-~ 143 (263)
|++|++++|++.. ++. .+..+++|++|++++|.++.++.. ++.+++|++|++++|.++++ |....... .
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 9999999999763 433 246889999999999999877642 57889999999999999996 55544332 3
Q ss_pred HHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcc
Q psy3787 144 RIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKL 221 (263)
Q Consensus 144 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l 221 (263)
..+++++++.+.+ ..+|..+. ++|++|+++ +++.+|. +.. +++|+. |++++|++
T Consensus 251 ~~L~~L~Ls~N~l----------------~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~----l~~L~~-L~L~~N~l 306 (310)
T 4glp_A 251 SALNSLNLSFAGL----------------EQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDE----LPEVDN-LTLDGNPF 306 (310)
T ss_dssp TTCCCEECCSSCC----------------CSCCSCCC--SCCSCEECCSCCCCSCCC-TTS----CCCCSC-EECSSTTT
T ss_pred CcCCEEECCCCCC----------------Cchhhhhc--CCCCEEECCCCcCCCCch-hhh----CCCccE-EECcCCCC
Confidence 5678888877773 45565554 899999999 8887764 222 447999 99999987
Q ss_pred c
Q psy3787 222 D 222 (263)
Q Consensus 222 ~ 222 (263)
+
T Consensus 307 ~ 307 (310)
T 4glp_A 307 L 307 (310)
T ss_dssp S
T ss_pred C
Confidence 6
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=2.1e-19 Score=148.08 Aligned_cols=175 Identities=21% Similarity=0.253 Sum_probs=145.5
Q ss_pred CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN 79 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 79 (263)
+++|++|++++|++.......+.++++|++|++++|.+..++ .+..+++|++|++++|.+..+++..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (276)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence 678999999999998732234999999999999999999665 488999999999999999998887789999999999
Q ss_pred eecCcCcc--ccccccCCCCcCEEEccCCcCCCcc-ccccCCCccc----EEEecCCCCCCcchHHHHhHHHHhhhhhCC
Q psy3787 80 LKNNKISE--VSSNVGDLINLAILDLSDNELTDVP-CELSSLFHLK----SLFLGGNPIKTVRNDILQDSKRIISHIKTS 152 (263)
Q Consensus 80 l~~~~l~~--lp~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~----~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~ 152 (263)
+++|.++. +|..+..+++|++|++++|.++.++ ..+..+.+++ .+++++|.++.++...+... .++.++++
T Consensus 131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~--~L~~L~L~ 208 (276)
T 2z62_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI--RLKELALD 208 (276)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSC--CEEEEECC
T ss_pred CcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCC--cccEEECC
Confidence 99999986 6888999999999999999999875 3466555555 89999999999887765543 57778887
Q ss_pred CCcccccccCCCCCCCcCCccccccc-ccccCCcceeccc--ccc
Q psy3787 153 RLDYHCQNVDGGGMSSQESTSEINID-KYKLDRTKTLTLC--KVI 194 (263)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~--~~~ 194 (263)
.+.+ ..++.. +..+++|+.|+++ .+.
T Consensus 209 ~n~l----------------~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 209 TNQL----------------KSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SSCC----------------SCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCce----------------eecCHhHhcccccccEEEccCCccc
Confidence 7763 344444 5789999999999 554
No 73
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=2.4e-19 Score=152.91 Aligned_cols=205 Identities=17% Similarity=0.221 Sum_probs=129.4
Q ss_pred CEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCC-CchhhhhCCCCccE-EEe
Q psy3787 6 KTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINN-MENDYFLTLTKLSL-LNL 80 (263)
Q Consensus 6 ~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~-L~l 80 (263)
++++.++++++. +|. + .++++.|++++|+|+.+| .|.++++|++|++++|.+.+ +++.+|.+++++.+ +.+
T Consensus 12 ~~v~C~~~~Lt~--iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTE--IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCS--CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCc--cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 456677777766 554 3 256777777777777766 36777777777777777643 55556667776654 455
Q ss_pred ecCcCcccc-ccccCCCCcCEEEccCCcCCCcccc-ccCCCcccEEEecC-CCCCCcchHHHHhHHHHhhhhhCCCCccc
Q psy3787 81 KNNKISEVS-SNVGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGG-NPIKTVRNDILQDSKRIISHIKTSRLDYH 157 (263)
Q Consensus 81 ~~~~l~~lp-~~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 157 (263)
.+|+++.++ ..+..+++|+++++++|.++.++.. +.....+..+++.+ +.+..++...+......+..++++.+.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-- 165 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-- 165 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC--
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc--
Confidence 567777663 4567777777777777777766542 44555666677655 466666655444332234455555555
Q ss_pred ccccCCCCCCCcCCcccccccccccCCcceeccc---cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccc
Q psy3787 158 CQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC---KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVIN 234 (263)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~---~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~ 234 (263)
...++.......+|+++++. .++.+|.+.|.... +|+. ||+++|+|+.+|...+..+.+
T Consensus 166 --------------i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~---~L~~-LdLs~N~l~~lp~~~~~~L~~ 227 (350)
T 4ay9_X 166 --------------IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS---GPVI-LDISRTRIHSLPSYGLENLKK 227 (350)
T ss_dssp --------------CCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEE---CCSE-EECTTSCCCCCCSSSCTTCCE
T ss_pred --------------ccCCChhhccccchhHHhhccCCcccCCCHHHhccCc---ccch-hhcCCCCcCccChhhhccchH
Confidence 34455555555677777775 56777766554333 6777 777777777777765543333
No 74
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=5.3e-19 Score=159.79 Aligned_cols=103 Identities=26% Similarity=0.344 Sum_probs=57.6
Q ss_pred CCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
++++|++++|.+.......+.++++|++|++++|.++.++ .+..+++|++|++++|.++.++.. .+++|++|+++
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls 129 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDLS 129 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEECC
T ss_pred CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEECC
Confidence 4556666666655522223566666666666666665442 255556666666666666554443 45566666666
Q ss_pred cCcCcccc--ccccCCCCcCEEEccCCcCC
Q psy3787 82 NNKISEVS--SNVGDLINLAILDLSDNELT 109 (263)
Q Consensus 82 ~~~l~~lp--~~~~~l~~L~~L~l~~n~l~ 109 (263)
+|+++.++ ..++.+++|++|++++|.+.
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CCCccccCchHhhcccCcccEEecCCCccc
Confidence 66665432 45555666666666665554
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=5.7e-19 Score=142.54 Aligned_cols=189 Identities=13% Similarity=0.119 Sum_probs=152.2
Q ss_pred EEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCc-Cccccc-cccCCCCcCEEEccC-CcC
Q psy3787 32 LNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK-ISEVSS-NVGDLINLAILDLSD-NEL 108 (263)
Q Consensus 32 L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~-l~~lp~-~~~~l~~L~~L~l~~-n~l 108 (263)
+++....++.+|. -..++++|++++|.++++++..|..+++|++|++++|+ ++.++. .+..+++|++|++++ |.+
T Consensus 16 ~~v~c~~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l 93 (239)
T 2xwt_C 16 FRVTCKDIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93 (239)
T ss_dssp TEEEECSCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC
T ss_pred ceeEccCccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe
Confidence 3444444777777 34589999999999999998889999999999999997 998876 678999999999998 999
Q ss_pred CCccc-cccCCCcccEEEecCCCCCCcchHHHHhHHHHhh---hhhCCCC-cccccccCCCCCCCcCCcccccc-ccccc
Q psy3787 109 TDVPC-ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIIS---HIKTSRL-DYHCQNVDGGGMSSQESTSEINI-DKYKL 182 (263)
Q Consensus 109 ~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~---~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 182 (263)
+.++. .+..+++|+.|++++|.++++|. .... ..++ .++++.+ . ...++. .+..+
T Consensus 94 ~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l--~~L~~L~~L~l~~N~~----------------l~~i~~~~~~~l 154 (239)
T 2xwt_C 94 TYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKV--YSTDIFFILEITDNPY----------------MTSIPVNAFQGL 154 (239)
T ss_dssp CEECTTSEECCTTCCEEEEEEECCCSCCC-CTTC--CBCCSEEEEEEESCTT----------------CCEECTTTTTTT
T ss_pred eEcCHHHhCCCCCCCEEeCCCCCCccccc-cccc--cccccccEEECCCCcc----------------hhhcCcccccch
Confidence 98864 58999999999999999999885 2222 2333 6666555 4 334443 47889
Q ss_pred CCcc-eeccc--cccccChhHHhhcCCccceeEEEeccCCc-ccccCccccccc-cccccccccCCceE
Q psy3787 183 DRTK-TLTLC--KVINIPESVYMRGMSSQECTIEINIDKYK-LDRTKTLTLCKV-INIPESVYMNRPFA 246 (263)
Q Consensus 183 ~~L~-~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~-l~~ip~~~~~~~-~~l~~~~~~~~~~~ 246 (263)
++|+ +|+++ .++.+|...+... +|+. |++++|+ ++.+|...+..+ .++..+.+.+|+..
T Consensus 155 ~~L~~~L~l~~n~l~~i~~~~~~~~----~L~~-L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 155 CNETLTLKLYNNGFTSVQGYAFNGT----KLDA-VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp BSSEEEEECCSCCCCEECTTTTTTC----EEEE-EECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred hcceeEEEcCCCCCcccCHhhcCCC----CCCE-EEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 9999 99998 8899998877664 5999 9999995 999998887777 77888888887743
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=1.1e-20 Score=168.06 Aligned_cols=190 Identities=21% Similarity=0.188 Sum_probs=159.9
Q ss_pred CCCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 1 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
.+++|+.|++++|.++. .+++..+++|++|++++|.++.++. .++|++|++++|.+..+++. .+++|+.|++
T Consensus 56 ~l~~L~~L~Ls~N~l~~--~~~l~~l~~L~~L~Ls~N~l~~l~~---~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L 127 (487)
T 3oja_A 56 PFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQELLV---GPSIETLHAANNNISRVSCS---RGQGKKNIYL 127 (487)
T ss_dssp TCTTCCEEECTTSCCEE--EEECTTCTTCCEEECCSSEEEEEEE---CTTCCEEECCSSCCCCEEEC---CCSSCEEEEC
T ss_pred CCCCCCEEEeeCCCCCC--CcccccCCCCCEEEecCCcCCCCCC---CCCcCEEECcCCcCCCCCcc---ccCCCCEEEC
Confidence 36789999999999987 5569999999999999999987764 37899999999999988764 4688999999
Q ss_pred ecCcCccc-cccccCCCCcCEEEccCCcCCCc-ccccc-CCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccc
Q psy3787 81 KNNKISEV-SSNVGDLINLAILDLSDNELTDV-PCELS-SLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYH 157 (263)
Q Consensus 81 ~~~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l-~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 157 (263)
++|.++.+ |..++.+++|++|++++|.++.+ |..+. .+++|+.|++++|.+++++.... ...+..|+++.+.
T Consensus 128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~---l~~L~~L~Ls~N~-- 202 (487)
T 3oja_A 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV---FAKLKTLDLSSNK-- 202 (487)
T ss_dssp CSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC---CTTCCEEECCSSC--
T ss_pred CCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccccc---CCCCCEEECCCCC--
Confidence 99999966 55788899999999999999964 55565 78999999999999998864332 3467788887777
Q ss_pred ccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCccc
Q psy3787 158 CQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLD 222 (263)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~ 222 (263)
...+|+.+..+++|+.|+++ .++.+|..+..+. +|+. +++++|.+.
T Consensus 203 --------------l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~----~L~~-L~l~~N~l~ 250 (487)
T 3oja_A 203 --------------LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ----NLEH-FDLRGNGFH 250 (487)
T ss_dssp --------------CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCT----TCCE-EECTTCCBC
T ss_pred --------------CCCCCHhHcCCCCccEEEecCCcCcccchhhccCC----CCCE-EEcCCCCCc
Confidence 45677778999999999999 8888888755444 5999 999999987
No 77
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=4.1e-19 Score=147.72 Aligned_cols=176 Identities=20% Similarity=0.276 Sum_probs=108.8
Q ss_pred cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEE
Q psy3787 23 FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILD 102 (263)
Q Consensus 23 ~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~ 102 (263)
+..+++|+.|++++|.+..++.+..+++|++|++++|.++++++ +..+++|++|++++|.++.++. +..+++|++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 44556666666666666666666666666666666666666554 5566666666666666666544 55666666666
Q ss_pred ccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCccccccccccc
Q psy3787 103 LSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKL 182 (263)
Q Consensus 103 l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (263)
+++|.++.++ .+..+++|+.|++++|.+++++ .+.. ...++.|+++.+. ...+++ +..+
T Consensus 119 L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~--l~~L~~L~L~~N~----------------l~~~~~-l~~l 177 (291)
T 1h6t_A 119 LEHNGISDIN-GLVHLPQLESLYLGNNKITDIT-VLSR--LTKLDTLSLEDNQ----------------ISDIVP-LAGL 177 (291)
T ss_dssp CTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGGG--CTTCSEEECCSSC----------------CCCCGG-GTTC
T ss_pred CCCCcCCCCh-hhcCCCCCCEEEccCCcCCcch-hhcc--CCCCCEEEccCCc----------------cccchh-hcCC
Confidence 6666666653 4566666666666666666652 1111 2345555555554 222332 6667
Q ss_pred CCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccc
Q psy3787 183 DRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLT 228 (263)
Q Consensus 183 ~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~ 228 (263)
++|++|+++ .++.++. +.. +++|+. |++++|+++..|...
T Consensus 178 ~~L~~L~L~~N~i~~l~~-l~~----l~~L~~-L~l~~n~i~~~~~~~ 219 (291)
T 1h6t_A 178 TKLQNLYLSKNHISDLRA-LAG----LKNLDV-LELFSQECLNKPINH 219 (291)
T ss_dssp TTCCEEECCSSCCCBCGG-GTT----CTTCSE-EEEEEEEEECCCEEC
T ss_pred CccCEEECCCCcCCCChh-hcc----CCCCCE-EECcCCcccCCcccc
Confidence 888888888 6777653 333 346888 888888887665543
No 78
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.79 E-value=3.7e-19 Score=160.11 Aligned_cols=130 Identities=25% Similarity=0.337 Sum_probs=59.6
Q ss_pred CCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
++++|++++|+++......+.++++|++|++++|.++.++ .+..+++|++|++++|.+.+.++..+..+++|++|+++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 3444555555444411112444555555555555444332 24444455555555555544444444444555555555
Q ss_pred cCcCcc--ccccccCCCCcCEEEccCCc-CCCcc-ccccCCCcccEEEecCCCCCC
Q psy3787 82 NNKISE--VSSNVGDLINLAILDLSDNE-LTDVP-CELSSLFHLKSLFLGGNPIKT 133 (263)
Q Consensus 82 ~~~l~~--lp~~~~~l~~L~~L~l~~n~-l~~l~-~~~~~l~~L~~L~l~~n~l~~ 133 (263)
+|.++. +|..++.+++|++|++++|. +..+| ..++.+++|+.|++++|.+++
T Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 554442 23344444455555555444 33333 234444455555555444444
No 79
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=9.2e-19 Score=157.72 Aligned_cols=178 Identities=19% Similarity=0.228 Sum_probs=148.5
Q ss_pred CCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec
Q psy3787 4 HLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN 82 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 82 (263)
+++.|++++|.++. +|. + +++|++|++++|.++.+| ..+++|++|++++|.+++++. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~--lp~~l--~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS--LPDNL--PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC--CCSCC--CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc--cCHhH--cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCC
Confidence 78999999999987 666 4 388999999999999988 567999999999999999766 544 899999999
Q ss_pred CcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccC
Q psy3787 83 NKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVD 162 (263)
Q Consensus 83 ~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 162 (263)
|+++.+|. .+++|+.|++++|.++.+|. .+++|+.|++++|.++++|. + . ..|..|+++.+.+
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l-~---~~L~~L~Ls~N~L------ 192 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-L-P---ESLEALDVSTNLL------ 192 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-C-C---TTCCEEECCSSCC------
T ss_pred CcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-h-h---CCCCEEECcCCCC------
Confidence 99999988 67899999999999999886 67899999999999999987 3 2 4678888877773
Q ss_pred CCCCCCcCCcccccccccccCCc-------ceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCc
Q psy3787 163 GGGMSSQESTSEINIDKYKLDRT-------KTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKT 226 (263)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~L-------~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~ 226 (263)
..+|. +.. +| +.|+++ .++.+|..++.+. +|+. |++++|+++...+
T Consensus 193 ----------~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~----~L~~-L~L~~N~l~~~~p 247 (571)
T 3cvr_A 193 ----------ESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLD----PTCT-IILEDNPLSSRIR 247 (571)
T ss_dssp ----------SSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSC----TTEE-EECCSSSCCHHHH
T ss_pred ----------Cchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCC----CCCE-EEeeCCcCCCcCH
Confidence 34444 433 66 999999 8899999888755 5999 9999999985433
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.78 E-value=2e-18 Score=140.45 Aligned_cols=135 Identities=31% Similarity=0.415 Sum_probs=121.3
Q ss_pred CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcC--CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
++++.|++++|.+.......+.++++|++|++++|.++.++. +..+++|++|++++|.++.+++..+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 468999999999998444449999999999999999997763 889999999999999999999888999999999999
Q ss_pred ecCcCcccccc-ccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCCcchH
Q psy3787 81 KNNKISEVSSN-VGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKTVRND 137 (263)
Q Consensus 81 ~~~~l~~lp~~-~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~ 137 (263)
++|+++.+|.. +..+++|++|++++|.++.++. .++.+++|+.|++++|.+++++..
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 99999988765 6889999999999999998876 589999999999999999987754
No 81
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=4.3e-18 Score=150.00 Aligned_cols=182 Identities=20% Similarity=0.254 Sum_probs=120.1
Q ss_pred CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec
Q psy3787 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN 82 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 82 (263)
++|++|++++|.++. +|. ..++|++|++++|.++.++.+. ++|++|++++|.+++++ .+..+++|++|++++
T Consensus 91 ~~L~~L~l~~n~l~~--lp~--~~~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 91 PHLESLVASCNSLTE--LPE--LPQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDN 162 (454)
T ss_dssp TTCSEEECCSSCCSS--CCC--CCTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCS
T ss_pred CCCCEEEccCCcCCc--ccc--ccCCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCc--ccCCCCCCCEEECCC
Confidence 346666666666665 443 2356777777777766655432 57888888888877765 377788888888888
Q ss_pred CcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccC
Q psy3787 83 NKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVD 162 (263)
Q Consensus 83 ~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 162 (263)
|+++.+|... .+|++|++++|.++.+| .++.+++|+.+++++|.++++|... ..++.++++.+.+
T Consensus 163 N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~-----~~L~~L~l~~n~l------ 227 (454)
T 1jl5_A 163 NSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP-----LSLESIVAGNNIL------ 227 (454)
T ss_dssp SCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC-----TTCCEEECCSSCC------
T ss_pred CcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc-----CcccEEECcCCcC------
Confidence 8887776643 36788888888887777 5778888888888888887766421 2456666655552
Q ss_pred CCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCc
Q psy3787 163 GGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKT 226 (263)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~ 226 (263)
..+| .+..+++|++|+++ .++.+|... ++|+. |++++|+++.+|.
T Consensus 228 ----------~~lp-~~~~l~~L~~L~l~~N~l~~l~~~~-------~~L~~-L~l~~N~l~~l~~ 274 (454)
T 1jl5_A 228 ----------EELP-ELQNLPFLTTIYADNNLLKTLPDLP-------PSLEA-LNVRDNYLTDLPE 274 (454)
T ss_dssp ----------SSCC-CCTTCTTCCEEECCSSCCSSCCSCC-------TTCCE-EECCSSCCSCCCC
T ss_pred ----------Cccc-ccCCCCCCCEEECCCCcCCcccccc-------cccCE-EECCCCcccccCc
Confidence 3344 36667777777777 566665421 13666 6666666665554
No 82
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=6.4e-18 Score=153.86 Aligned_cols=189 Identities=22% Similarity=0.219 Sum_probs=113.9
Q ss_pred CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
+++|+.|++++|+++. +|. .+++|++|++++|.++.+|. .+++|+.|++++|.++.++.. +++|++|+++
T Consensus 80 l~~L~~L~Ls~N~l~~--lp~--~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls 149 (622)
T 3g06_A 80 PPELRTLEVSGNQLTS--LPV--LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVS 149 (622)
T ss_dssp CTTCCEEEECSCCCSC--CCC--CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSCCCCC----CTTCCEEECC
T ss_pred CCCCCEEEcCCCcCCc--CCC--CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCcCCCC----CCCCCEEECc
Confidence 4678888888888776 554 66777777777777776664 345555555555555554431 2445555555
Q ss_pred cCcCccccccc-----------------cCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHH----
Q psy3787 82 NNKISEVSSNV-----------------GDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQ---- 140 (263)
Q Consensus 82 ~~~l~~lp~~~-----------------~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---- 140 (263)
+|+++.+|..+ ..+++|+.|++++|.++.+|..+ ++|+.|++++|.++.+|.....
T Consensus 150 ~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~---~~L~~L~L~~N~l~~l~~~~~~L~~L 226 (622)
T 3g06_A 150 DNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLTSLPALPSGLKEL 226 (622)
T ss_dssp SSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred CCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCcc---chhhEEECcCCcccccCCCCCCCCEE
Confidence 55544433222 12366777777777777665432 3445555555555444421100
Q ss_pred -----------hHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCc
Q psy3787 141 -----------DSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSS 207 (263)
Q Consensus 141 -----------~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~ 207 (263)
.....+..++++.+. ...+|. .+++|+.|+++ .++.+|..+..+.
T Consensus 227 ~Ls~N~L~~lp~~l~~L~~L~Ls~N~----------------L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~--- 284 (622)
T 3g06_A 227 IVSGNRLTSLPVLPSELKELMVSGNR----------------LTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLS--- 284 (622)
T ss_dssp ECCSSCCSCCCCCCTTCCEEECCSSC----------------CSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSC---
T ss_pred EccCCccCcCCCCCCcCcEEECCCCC----------------CCcCCc---ccccCcEEeCCCCCCCcCCHHHhhcc---
Confidence 001233344443333 334444 56899999999 8899998876655
Q ss_pred cceeEEEeccCCcccccCcc
Q psy3787 208 QECTIEINIDKYKLDRTKTL 227 (263)
Q Consensus 208 ~~L~~~L~ls~n~l~~ip~~ 227 (263)
+|+. |++++|+++..+..
T Consensus 285 -~L~~-L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 285 -SETT-VNLEGNPLSERTLQ 302 (622)
T ss_dssp -TTCE-EECCSCCCCHHHHH
T ss_pred -ccCE-EEecCCCCCCcCHH
Confidence 5999 99999999854443
No 83
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=1.1e-17 Score=147.36 Aligned_cols=124 Identities=24% Similarity=0.368 Sum_probs=90.5
Q ss_pred CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec
Q psy3787 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN 82 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 82 (263)
++|++|++++|++.. +|.+.++++|++|++++|.++.+|.. ..+|++|++++|.+.+++ .+..+++|++|++++
T Consensus 131 ~~L~~L~L~~n~l~~--lp~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADN 204 (454)
T ss_dssp TTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCS
T ss_pred CCCCEEECcCCCCCC--CcccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCc--cccCCCCCCEEECCC
Confidence 478889999998887 66788888899999998888877743 347888888888887765 267777788888777
Q ss_pred CcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcch
Q psy3787 83 NKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRN 136 (263)
Q Consensus 83 ~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~ 136 (263)
|.++.+|... .+|+++++++|.++.+| .++.+++|+.+++++|.++++|.
T Consensus 205 N~l~~l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~ 254 (454)
T 1jl5_A 205 NSLKKLPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPD 254 (454)
T ss_dssp SCCSSCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCS
T ss_pred CcCCcCCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCcccc
Confidence 7777665532 35667777777666666 36666666666666666666553
No 84
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=6.2e-19 Score=144.52 Aligned_cols=124 Identities=23% Similarity=0.296 Sum_probs=106.6
Q ss_pred CCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCc
Q psy3787 5 LKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK 84 (263)
Q Consensus 5 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 84 (263)
+..++++++.++. ++.+..+++|+.|++++|.++.++.+..+++|++|++++|.+.++++ +..+++|++|++++|+
T Consensus 21 l~~l~l~~~~i~~--~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 21 AVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHHTCSCTTS--EECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC
T ss_pred HHHHHhcCCCccc--ccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc
Confidence 4455677787776 66788899999999999999988888889999999999999998876 8889999999999999
Q ss_pred CccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcc
Q psy3787 85 ISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVR 135 (263)
Q Consensus 85 l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~ 135 (263)
++.+|.... .+|++|++++|.++.++ .++.+++|+.|++++|.+++++
T Consensus 97 l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~ 144 (263)
T 1xeu_A 97 LKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV 144 (263)
T ss_dssp CSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG
T ss_pred cCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh
Confidence 998876544 88999999999999876 5889999999999999988874
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=5.3e-18 Score=140.95 Aligned_cols=171 Identities=26% Similarity=0.338 Sum_probs=145.8
Q ss_pred CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
+++|+.|++++|.+.. ++.+..+++|+.|++++|.++.++.+..+++|++|++++|.+..++. +..+++|++|+++
T Consensus 45 l~~L~~L~l~~~~i~~--~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLE 120 (291)
T ss_dssp HHTCCEEECTTSCCCC--CTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECT
T ss_pred cCcccEEEccCCCccc--ChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECC
Confidence 4578999999999987 67799999999999999999988888999999999999999988654 8899999999999
Q ss_pred cCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccccc
Q psy3787 82 NNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNV 161 (263)
Q Consensus 82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 161 (263)
+|+++.++ .+..+++|++|++++|.++.+ ..++.+++|+.|++++|.++++++ ... ...++.++++.+.+
T Consensus 121 ~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~--l~~L~~L~L~~N~i----- 190 (291)
T 1h6t_A 121 HNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAG--LTKLQNLYLSKNHI----- 190 (291)
T ss_dssp TSCCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTT--CTTCCEEECCSSCC-----
T ss_pred CCcCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcC--CCccCEEECCCCcC-----
Confidence 99999875 577899999999999999988 478999999999999999999876 222 35677888877763
Q ss_pred CCCCCCCcCCcccccccccccCCcceeccc--cccccCh
Q psy3787 162 DGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPE 198 (263)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~ 198 (263)
..++ .+..+++|+.|+++ .++..|.
T Consensus 191 -----------~~l~-~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 191 -----------SDLR-ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp -----------CBCG-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred -----------CCCh-hhccCCCCCEEECcCCcccCCcc
Confidence 3333 48889999999999 6666554
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=3.8e-18 Score=155.01 Aligned_cols=180 Identities=20% Similarity=0.260 Sum_probs=115.7
Q ss_pred ccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcC
Q psy3787 20 LPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLA 99 (263)
Q Consensus 20 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~ 99 (263)
+..+..+++|+.|++++|.+..++.+..+++|+.|++++|.+..+++ +..+++|+.|++++|.++.+| .+..+++|+
T Consensus 36 ~~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 36 AVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLK 112 (605)
T ss_dssp EECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCC
T ss_pred ccchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCC
Confidence 33355566677777777777766666667777777777777766655 566777777777777776655 456667777
Q ss_pred EEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccc
Q psy3787 100 ILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDK 179 (263)
Q Consensus 100 ~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (263)
.|++++|.+..++ .+..+++|+.|++++|.++.++ .+.. ...|+.|+++.+.+ ..+++ +
T Consensus 113 ~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~--l~~L~~L~Ls~N~l----------------~~~~~-l 171 (605)
T 1m9s_A 113 SLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDIT-VLSR--LTKLDTLSLEDNQI----------------SDIVP-L 171 (605)
T ss_dssp EEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCCG-GGGS--CTTCSEEECCSSCC----------------CCCGG-G
T ss_pred EEEecCCCCCCCc-cccCCCccCEEECCCCccCCch-hhcc--cCCCCEEECcCCcC----------------CCchh-h
Confidence 7777777776654 4666677777777777776652 1111 23455566655552 22333 6
Q ss_pred cccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccc
Q psy3787 180 YKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTL 229 (263)
Q Consensus 180 ~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~ 229 (263)
..+++|+.|+|+ .+..++ .+.. +++|+. |++++|++...|....
T Consensus 172 ~~l~~L~~L~Ls~N~i~~l~-~l~~----l~~L~~-L~L~~N~l~~~p~~~~ 217 (605)
T 1m9s_A 172 AGLTKLQNLYLSKNHISDLR-ALAG----LKNLDV-LELFSQECLNKPINHQ 217 (605)
T ss_dssp TTCTTCCEEECCSSCCCBCG-GGTT----CTTCSE-EECCSEEEECCCCCCC
T ss_pred ccCCCCCEEECcCCCCCCCh-HHcc----CCCCCE-EEccCCcCcCCccccc
Confidence 677888888888 666664 3333 345888 8888888876665443
No 87
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=9.7e-18 Score=152.84 Aligned_cols=138 Identities=25% Similarity=0.314 Sum_probs=121.3
Q ss_pred CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
+++++|++++|+++.....+|.++++|++|++++|.|+.++ .|.++++|++|++++|+++++++.+|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 36899999999999832223999999999999999999876 4899999999999999999999998999999999999
Q ss_pred ecCcCccccc-cccCCCCcCEEEccCCcCCC--ccccccCCCcccEEEecCCCCCCcchHHHH
Q psy3787 81 KNNKISEVSS-NVGDLINLAILDLSDNELTD--VPCELSSLFHLKSLFLGGNPIKTVRNDILQ 140 (263)
Q Consensus 81 ~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 140 (263)
++|+++.++. .++.+++|++|++++|.++. +|..++.+++|++|++++|.++++++..+.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 9999998876 48899999999999999985 467789999999999999999997765443
No 88
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=1.5e-17 Score=142.40 Aligned_cols=157 Identities=29% Similarity=0.321 Sum_probs=134.1
Q ss_pred CCCCEEEeecCccCCCCccccC-CCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787 3 SHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN 79 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 79 (263)
..++.|++++|+++......+. ++++|+.|++++|.++.++ .|..+++|++|++++|.+..+++..|..+++|+.|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 3578999999999883222266 8999999999999999776 489999999999999999999988899999999999
Q ss_pred eecCcCccc-cccccCCCCcCEEEccCCcCCCccccc----cCCCcccEEEecCCCCCCcchHHHHhH-HHHhhhhhCCC
Q psy3787 80 LKNNKISEV-SSNVGDLINLAILDLSDNELTDVPCEL----SSLFHLKSLFLGGNPIKTVRNDILQDS-KRIISHIKTSR 153 (263)
Q Consensus 80 l~~~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~~l~~l~~~~ 153 (263)
+++|+++.+ |..+..+.+|++|++++|.++.+|..+ ..+++|+.|++++|.++.++...+... ...+..+++.+
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence 999999977 567899999999999999999998764 679999999999999999997766554 22357788989
Q ss_pred Cccccc
Q psy3787 154 LDYHCQ 159 (263)
Q Consensus 154 ~~~~~~ 159 (263)
+++.|.
T Consensus 199 N~~~C~ 204 (361)
T 2xot_A 199 NPLECD 204 (361)
T ss_dssp SCEECC
T ss_pred CCccCC
Confidence 998775
No 89
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.3e-17 Score=130.76 Aligned_cols=109 Identities=23% Similarity=0.291 Sum_probs=63.2
Q ss_pred CCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCcc-ccccccCCCCcCEEE
Q psy3787 24 IDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISE-VSSNVGDLINLAILD 102 (263)
Q Consensus 24 ~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~ 102 (263)
..+++|+.|++++|.+..++.+..+++|++|++++|.+...+ .+..+++|++|++++|+++. .+..+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 345556666666666665555555666666666666554432 25556666666666666653 455555666666666
Q ss_pred ccCCcCCC-ccccccCCCcccEEEecCCC-CCCc
Q psy3787 103 LSDNELTD-VPCELSSLFHLKSLFLGGNP-IKTV 134 (263)
Q Consensus 103 l~~n~l~~-l~~~~~~l~~L~~L~l~~n~-l~~~ 134 (263)
+++|.++. .+..++.+++|+.|++++|. ++.+
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~ 152 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc
Confidence 66666653 34445666666666666664 4444
No 90
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=1.2e-17 Score=142.89 Aligned_cols=173 Identities=24% Similarity=0.338 Sum_probs=102.2
Q ss_pred CEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcC--CC-CCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 6 KTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPV--CT-DCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 6 ~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~--~~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
+.+++++++++. +|. + .+.++.|++++|.++.++. +. .+++|++|++++|.+..+++..|..+++|++|+++
T Consensus 21 ~~l~c~~~~l~~--iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN--VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS--CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc--cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 356666666655 443 2 2346666777776665542 44 56666677777776666666666666667777777
Q ss_pred cCcCccccc-cccCCCCcCEEEccCCcCCCc-cccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccc
Q psy3787 82 NNKISEVSS-NVGDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQ 159 (263)
Q Consensus 82 ~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 159 (263)
+|+++.++. .+..+.+|++|++++|.++.+ +..+..+++|+.|++++|.++.+|...+..
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~------------------ 158 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD------------------ 158 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-------------------
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcC------------------
Confidence 766665544 356666667777766666655 344666666667766666666655432110
Q ss_pred ccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcc
Q psy3787 160 NVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKL 221 (263)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l 221 (263)
+..+++|+.|+++ .++.+|...+.... ...++. |++++|.+
T Consensus 159 -------------------~~~l~~L~~L~L~~N~l~~l~~~~~~~l~-~~~l~~-l~l~~N~~ 201 (361)
T 2xot_A 159 -------------------GNKLPKLMLLDLSSNKLKKLPLTDLQKLP-AWVKNG-LYLHNNPL 201 (361)
T ss_dssp ----------------------CTTCCEEECCSSCCCCCCHHHHHHSC-HHHHTT-EECCSSCE
T ss_pred -------------------cccCCcCCEEECCCCCCCccCHHHhhhcc-Hhhcce-EEecCCCc
Confidence 1335667777777 66777655444332 001366 77777744
No 91
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=3.2e-17 Score=131.50 Aligned_cols=131 Identities=31% Similarity=0.410 Sum_probs=87.0
Q ss_pred CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcC--CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
++|+.|++++|.+.......+.++++|+.|++++|.+..++. +..+++|++|++++|.++.+++..|..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 356677777777666222226667777777777777766652 566677777777777777666666666777777777
Q ss_pred ecCcCccccccccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCC
Q psy3787 81 KNNKISEVSSNVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKT 133 (263)
Q Consensus 81 ~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~ 133 (263)
++|+++.+|..+..+++|++|++++|.++.++. .+..+++|+.+++++|++..
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 777777776666666777777777777766653 36666677777777776654
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.73 E-value=5.4e-17 Score=128.10 Aligned_cols=145 Identities=29% Similarity=0.357 Sum_probs=86.4
Q ss_pred EEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcC--CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCc
Q psy3787 7 TLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK 84 (263)
Q Consensus 7 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 84 (263)
.++++++.++. +|. .-.+++++|++++|.++.++. +..+++|++|++++|.+..+++..+..+++|++|++++|+
T Consensus 11 ~v~c~~~~l~~--~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRTS--VPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCSS--CCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccC--CCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 45555555554 332 113466666777766665553 5566666677777666666666656666667777777666
Q ss_pred Ccccccc-ccCCCCcCEEEccCCcCCCcccc-ccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCc
Q psy3787 85 ISEVSSN-VGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLD 155 (263)
Q Consensus 85 l~~lp~~-~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~ 155 (263)
++.++.. +..+++|++|++++|.++.++.. +..+++|+.|++++|.+++++...+... ..++.+++.++.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~l~~N~ 159 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL-TSLQYIWLHDNP 159 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-TTCCEEECCSCC
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccC-CCccEEEecCCC
Confidence 6655543 45666677777766666665443 5666667777777666666655433221 344555554444
No 93
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.73 E-value=1.7e-17 Score=126.55 Aligned_cols=136 Identities=22% Similarity=0.150 Sum_probs=119.8
Q ss_pred CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
.++|++|++++|.+....+|. +..+++|++|++++|.++.++.+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 367999999999998323666 7899999999999999998877889999999999999999866776777999999999
Q ss_pred ecCcCcccc--ccccCCCCcCEEEccCCcCCCccc----cccCCCcccEEEecCCCCCCcchH
Q psy3787 81 KNNKISEVS--SNVGDLINLAILDLSDNELTDVPC----ELSSLFHLKSLFLGGNPIKTVRND 137 (263)
Q Consensus 81 ~~~~l~~lp--~~~~~l~~L~~L~l~~n~l~~l~~----~~~~l~~L~~L~l~~n~l~~~~~~ 137 (263)
++|.++.+| ..+..+++|++|++++|.++.+|. .+..+++|+.|++++|.+.++|..
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 999999876 678899999999999999998876 688999999999999998887743
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.72 E-value=4.9e-17 Score=128.36 Aligned_cols=131 Identities=32% Similarity=0.415 Sum_probs=100.2
Q ss_pred CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcC--CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
+++++|++++|++.......+.++++|++|++++|.++.++. +..+++|++|++++|.++.+++..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 467888888888876222227788888888888888887663 677788888888888888777777777888888888
Q ss_pred ecCcCcccccc-ccCCCCcCEEEccCCcCCCcccc-ccCCCcccEEEecCCCCCC
Q psy3787 81 KNNKISEVSSN-VGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKT 133 (263)
Q Consensus 81 ~~~~l~~lp~~-~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~l~~ 133 (263)
++|+++.++.. +..+++|++|++++|.++.++.. +..+++|+.+++++|++..
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 88888877654 57778888888888888877654 6778888888888887665
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.72 E-value=1.5e-17 Score=141.76 Aligned_cols=197 Identities=17% Similarity=0.237 Sum_probs=151.8
Q ss_pred CCCCEEEeecCccCCCCccc--cCCCCCCcEEEecCCCCCC-Cc--CCCCCCCCcE-EEecCCCCCCCchhhhhCCCCcc
Q psy3787 3 SHLKTLDLSHNKLVSDSLPL--FIDMRSLTELNLSYNQLTM-LP--VCTDCKNLTH-LLLGFNKINNMENDYFLTLTKLS 76 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-l~--~~~~~~~L~~-L~l~~n~~~~~~~~~~~~l~~L~ 76 (263)
+++++|++++|+++. +|+ |.++++|++|++++|.+.. ++ .|.+++++.. +.+..|++..+++.+|..+++|+
T Consensus 30 ~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 30 RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp TTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 478999999999998 665 9999999999999999854 55 4788888776 56777999999999999999999
Q ss_pred EEEeecCcCcccccc-ccCCCCcCEEEccC-CcCCCccc-cccCCC-cccEEEecCCCCCCcchHHHHhHHHHhhhhhCC
Q psy3787 77 LLNLKNNKISEVSSN-VGDLINLAILDLSD-NELTDVPC-ELSSLF-HLKSLFLGGNPIKTVRNDILQDSKRIISHIKTS 152 (263)
Q Consensus 77 ~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~-n~l~~l~~-~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~ 152 (263)
++++++|+++.+|.. +.....+..+++.+ +.+..++. .+..+. .++.|++++|.+++++...+... .+..+.+.
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~--~L~~l~l~ 185 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT--QLDELNLS 185 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTE--EEEEEECT
T ss_pred cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcccc--chhHHhhc
Confidence 999999999988664 45666788888876 57777764 355554 68899999999999998877654 45555554
Q ss_pred C-CcccccccCCCCCCCcCCccccccc-ccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccC-CcccccCc
Q psy3787 153 R-LDYHCQNVDGGGMSSQESTSEINID-KYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDK-YKLDRTKT 226 (263)
Q Consensus 153 ~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~-n~l~~ip~ 226 (263)
. +. .+.+|.. +..+++|++|+++ +++.+|...+. .|+. |.+.+ +.++.+|+
T Consensus 186 ~~n~----------------l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~------~L~~-L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 186 DNNN----------------LEELPNDVFHGASGPVILDISRTRIHSLPSYGLE------NLKK-LRARSTYNLKKLPT 241 (350)
T ss_dssp TCTT----------------CCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT------TCCE-EECTTCTTCCCCCC
T ss_pred cCCc----------------ccCCCHHHhccCcccchhhcCCCCcCccChhhhc------cchH-hhhccCCCcCcCCC
Confidence 3 22 4455544 6889999999999 88999976543 3555 55544 34777775
No 96
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=6.3e-17 Score=129.79 Aligned_cols=128 Identities=30% Similarity=0.426 Sum_probs=105.7
Q ss_pred CEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec
Q psy3787 6 KTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN 82 (263)
Q Consensus 6 ~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 82 (263)
+.++.+++.++. +|. + .++|+.|++++|.++.++ .+..+++|++|++++|.+..+++..|..+++|+.|++++
T Consensus 22 ~~v~c~~~~l~~--ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSKRHAS--VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTSCCSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccCCCcCc--cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 567788887776 665 3 278899999999988764 378888999999999999888888788888999999999
Q ss_pred CcCcccccc-ccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchH
Q psy3787 83 NKISEVSSN-VGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRND 137 (263)
Q Consensus 83 ~~l~~lp~~-~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~ 137 (263)
|+++.++.. +..+++|++|++++|.++.+|..+..+++|+.|++++|.++.++..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHH
Confidence 998877654 5788889999999999988888888888999999999988887653
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.71 E-value=2.1e-18 Score=147.64 Aligned_cols=210 Identities=22% Similarity=0.189 Sum_probs=123.3
Q ss_pred CCCCEEEeecCccCCCCc----cccCCCC-CCcEEEecCCCCCCCc--CCCCC-----CCCcEEEecCCCCCCCchhhh-
Q psy3787 3 SHLKTLDLSHNKLVSDSL----PLFIDMR-SLTELNLSYNQLTMLP--VCTDC-----KNLTHLLLGFNKINNMENDYF- 69 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~----~~~~~l~-~L~~L~l~~n~l~~l~--~~~~~-----~~L~~L~l~~n~~~~~~~~~~- 69 (263)
++|++|++++|.++.... ..+.+++ +|++|++++|.++... .+..+ ++|++|++++|.++...+..+
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 358888888888877443 3367777 7888888888877543 23222 778888888888776655533
Q ss_pred ---hCC-CCccEEEeecCcCccccc-c----ccC-CCCcCEEEccCCcCCC-----ccccccCCC-cccEEEecCCCCCC
Q psy3787 70 ---LTL-TKLSLLNLKNNKISEVSS-N----VGD-LINLAILDLSDNELTD-----VPCELSSLF-HLKSLFLGGNPIKT 133 (263)
Q Consensus 70 ---~~l-~~L~~L~l~~~~l~~lp~-~----~~~-l~~L~~L~l~~n~l~~-----l~~~~~~l~-~L~~L~l~~n~l~~ 133 (263)
... ++|++|++++|+++..+. . +.. ..+|++|++++|.++. ++..+...+ +|+.|++++|.++.
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 333 678888888888775432 1 333 3578888888887772 334445554 78888888887777
Q ss_pred cchHHHHhH---H-HHhhhhhCCCCcccccccCCCCCCCcCCcccccccccc-cCCcceeccc--cccccCh-hHHhhcC
Q psy3787 134 VRNDILQDS---K-RIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYK-LDRTKTLTLC--KVINIPE-SVYMRGM 205 (263)
Q Consensus 134 ~~~~~~~~~---~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~--~~~~l~~-~~~~~~~ 205 (263)
.....+... . ..++.++++.+.+. +.+ ...++..+.. .++|++|+++ .++..+. .+.....
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~-----~~~------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~ 250 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLG-----LKS------YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKD 250 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGG-----GSC------HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTT
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCC-----hhH------HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHh
Confidence 554433322 1 35666666655531 111 1123333433 2366666666 5544433 2222222
Q ss_pred CccceeEEEeccCCccccc
Q psy3787 206 SSQECTIEINIDKYKLDRT 224 (263)
Q Consensus 206 ~~~~L~~~L~ls~n~l~~i 224 (263)
.+++|+. |++++|.+..+
T Consensus 251 ~l~~L~~-L~L~~n~l~~i 268 (362)
T 3goz_A 251 SLKHLQT-VYLDYDIVKNM 268 (362)
T ss_dssp TTTTCSE-EEEEHHHHTTC
T ss_pred cCCCccE-EEeccCCcccc
Confidence 3445665 66666654433
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.71 E-value=5.9e-18 Score=143.08 Aligned_cols=218 Identities=15% Similarity=0.152 Sum_probs=153.5
Q ss_pred CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCC--Cc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTM--LP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN 79 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 79 (263)
++++.+++++|.+.. ..+.+..+++|++|++++|.++. ++ .+..+++|++|++++|.++...+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~-~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQ-PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECS-CCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccc-cchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 568888999988887 23447788999999999998773 44 367788999999999988866667788899999999
Q ss_pred eecC-cCc--cccccccCCCCcCEEEccCC-cCCC--ccccccCCC-cccEEEecCCC--CCC--cchHHHHhHHHHhhh
Q psy3787 80 LKNN-KIS--EVSSNVGDLINLAILDLSDN-ELTD--VPCELSSLF-HLKSLFLGGNP--IKT--VRNDILQDSKRIISH 148 (263)
Q Consensus 80 l~~~-~l~--~lp~~~~~l~~L~~L~l~~n-~l~~--l~~~~~~l~-~L~~L~l~~n~--l~~--~~~~~~~~~~~~l~~ 148 (263)
+++| .++ .++..+..+++|++|++++| .++. ++..+..++ +|+.|++++|. ++. ++..... ...++.
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~--~~~L~~ 226 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR--CPNLVH 226 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH--CTTCSE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh--CCCCCE
Confidence 9999 677 36776778889999999999 8874 566688888 99999999984 432 3332212 345666
Q ss_pred hhCCCCc-ccccccCCCCCCCcCCcccccccccccCCcceeccc-cccccChhHHhhcCCccceeEEEeccCCcccccCc
Q psy3787 149 IKTSRLD-YHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC-KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKT 226 (263)
Q Consensus 149 l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~-~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~ 226 (263)
++++.+. + ....+..+..+++|++|+++ +-...+..+... .++++|+. |++++| ++.
T Consensus 227 L~l~~~~~l---------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~-L~l~~~----i~~ 285 (336)
T 2ast_B 227 LDLSDSVML---------------KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKT-LQVFGI----VPD 285 (336)
T ss_dssp EECTTCTTC---------------CGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG-GGCTTCCE-EECTTS----SCT
T ss_pred EeCCCCCcC---------------CHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH-hcCCCCCE-EeccCc----cCH
Confidence 7766555 2 23455567888999999999 433333322122 22557998 999998 444
Q ss_pred cccccc-cccccccccCCc
Q psy3787 227 LTLCKV-INIPESVYMNRP 244 (263)
Q Consensus 227 ~~~~~~-~~l~~~~~~~~~ 244 (263)
.....+ ..++.+.+.+|.
T Consensus 286 ~~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 286 GTLQLLKEALPHLQINCSH 304 (336)
T ss_dssp TCHHHHHHHSTTSEESCCC
T ss_pred HHHHHHHhhCcceEEeccc
Confidence 333222 235555555544
No 99
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.71 E-value=3.9e-17 Score=148.82 Aligned_cols=144 Identities=23% Similarity=0.266 Sum_probs=116.8
Q ss_pred EEEeecCccCCCCccccCCC-CCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecC
Q psy3787 7 TLDLSHNKLVSDSLPLFIDM-RSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNN 83 (263)
Q Consensus 7 ~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 83 (263)
+.+.++.+++. +|+ ++ +.++.|++++|.|+.++ +|..+++|++|++++|.++++++++|+++++|++|++++|
T Consensus 35 ~~~c~~~~l~~--vP~--~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 35 TYQCMELNFYK--IPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp EEECTTSCCSS--CCS--SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCCcCc--cCC--CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 34555555665 664 23 47999999999999876 4899999999999999999999999999999999999999
Q ss_pred cCccccc-cccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCCcc--hHHHHhHHHHhhhhhCCCCcc
Q psy3787 84 KISEVSS-NVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKTVR--NDILQDSKRIISHIKTSRLDY 156 (263)
Q Consensus 84 ~l~~lp~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~~l~~l~~~~~~~ 156 (263)
+++.+|. .+..+++|++|++++|.++.++. .++.+++|+.|++++|.++.++ ..... ...+++++++.+.+
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~--l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN--LTNLEHLDLSSNKI 185 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG--CTTCCEEECCSSCC
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhcc--chhhhhhcccCccc
Confidence 9998875 57899999999999999998865 4899999999999999998753 22222 24667777766653
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=9.3e-17 Score=144.70 Aligned_cols=178 Identities=16% Similarity=0.184 Sum_probs=145.2
Q ss_pred CCcEEEecCCCCCCCcC-CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCC
Q psy3787 28 SLTELNLSYNQLTMLPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDN 106 (263)
Q Consensus 28 ~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n 106 (263)
+++.|++++|.++.+|. + .++|++|++++|.++.++ ..+++|++|++++|+++.+|. +.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 89999999999998885 4 378999999999999877 347899999999999999988 655 8999999999
Q ss_pred cCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcc
Q psy3787 107 ELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTK 186 (263)
Q Consensus 107 ~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 186 (263)
.++.+|. .+++|+.|++++|.++++|. ....++.|+++.+. ...+|. +. ++|+
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~----------------L~~lp~-l~--~~L~ 183 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQLTMLPE-----LPTSLEVLSVRNNQ----------------LTFLPE-LP--ESLE 183 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSC----------------CSCCCC-CC--TTCC
T ss_pred cCCCCCC---cCccccEEeCCCCccCcCCC-----cCCCcCEEECCCCC----------------CCCcch-hh--CCCC
Confidence 9999987 68899999999999999886 22467788887777 344555 54 8999
Q ss_pred eeccc--cccccChhHHhhcC---CccceeEEEeccCCcccccCccccccccccccccccCCceE
Q psy3787 187 TLTLC--KVINIPESVYMRGM---SSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFA 246 (263)
Q Consensus 187 ~L~l~--~~~~l~~~~~~~~~---~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~ 246 (263)
.|+++ .++.+|. +.. . ....|+. |++++|+|+.+|..... +.++..+.+.+|+..
T Consensus 184 ~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~-L~Ls~N~l~~lp~~l~~-l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 184 ALDVSTNLLESLPA-VPV--RNHHSEETEIF-FRCRENRITHIPENILS-LDPTCTIILEDNPLS 243 (571)
T ss_dssp EEECCSSCCSSCCC-CC----------CCEE-EECCSSCCCCCCGGGGG-SCTTEEEECCSSSCC
T ss_pred EEECcCCCCCchhh-HHH--hhhcccccceE-EecCCCcceecCHHHhc-CCCCCEEEeeCCcCC
Confidence 99999 8888887 332 2 0012299 99999999999985543 777888888888854
No 101
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=2.1e-18 Score=148.85 Aligned_cols=230 Identities=16% Similarity=0.130 Sum_probs=151.9
Q ss_pred CCCCCEEEeecCccCCCCccc----cCCCCCCcEEEecCCCCCCC----c-C-------CCCCCCCcEEEecCCCCCC--
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPL----FIDMRSLTELNLSYNQLTML----P-V-------CTDCKNLTHLLLGFNKINN-- 63 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~----~~~l~~L~~L~l~~n~l~~l----~-~-------~~~~~~L~~L~l~~n~~~~-- 63 (263)
+++|+.|++++|.+....... +..+++|++|++++|.+..+ | . +..+++|++|++++|.++.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 567899999999887632222 66889999999999866633 2 1 3678899999999999886
Q ss_pred --CchhhhhCCCCccEEEeecCcCcc-----ccccccCC---------CCcCEEEccCCcCC--Ccc---ccccCCCccc
Q psy3787 64 --MENDYFLTLTKLSLLNLKNNKISE-----VSSNVGDL---------INLAILDLSDNELT--DVP---CELSSLFHLK 122 (263)
Q Consensus 64 --~~~~~~~~l~~L~~L~l~~~~l~~-----lp~~~~~l---------~~L~~L~l~~n~l~--~l~---~~~~~l~~L~ 122 (263)
..+..+..+++|++|++++|.++. ++..+..+ ++|++|++++|.++ .++ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 345567888999999999998873 23333333 78999999999887 344 4567788999
Q ss_pred EEEecCCCCCCcchHH-HH-h-H-HHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--ccccc
Q psy3787 123 SLFLGGNPIKTVRNDI-LQ-D-S-KRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINI 196 (263)
Q Consensus 123 ~L~l~~n~l~~~~~~~-~~-~-~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l 196 (263)
.|++++|.++...... .. . . ...++.|+++.+.+. +.+ ...++..+..+++|++|+++ .++..
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~-----~~g------~~~l~~~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT-----HLG------SSALAIALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH-----HHH------HHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC-----cHH------HHHHHHHHccCCCcCEEECCCCCCchh
Confidence 9999999887321111 11 1 1 345666666655520 000 14455667777888888888 55433
Q ss_pred -----ChhHHhhcCCccceeEEEeccCCcccc-----cCccccccccccccccccCCce
Q psy3787 197 -----PESVYMRGMSSQECTIEINIDKYKLDR-----TKTLTLCKVINIPESVYMNRPF 245 (263)
Q Consensus 197 -----~~~~~~~~~~~~~L~~~L~ls~n~l~~-----ip~~~~~~~~~l~~~~~~~~~~ 245 (263)
+..+.. ..+++|+. |++++|.++. +|......+.++..+.+.+|+.
T Consensus 260 ~~~~l~~~l~~--~~~~~L~~-L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 260 GAAAVVDAFSK--LENIGLQT-LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHHHHHHHT--CSSCCCCE-EECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred hHHHHHHHHhh--ccCCCeEE-EECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 222211 01345888 8888888876 6654433446666777777764
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=4.2e-17 Score=148.17 Aligned_cols=171 Identities=27% Similarity=0.333 Sum_probs=142.8
Q ss_pred CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
|++|+.|++++|.+.. ++.+..+++|+.|++++|.+..++.+..+++|+.|++++|.+..++ .+..+++|+.|+++
T Consensus 42 L~~L~~L~l~~n~i~~--l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLE 117 (605)
T ss_dssp HTTCCCCBCTTCCCCC--CTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECT
T ss_pred CCCCCEEECcCCCCCC--ChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEec
Confidence 5678999999999887 6779999999999999999998888889999999999999998865 37889999999999
Q ss_pred cCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccccc
Q psy3787 82 NNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNV 161 (263)
Q Consensus 82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 161 (263)
+|.++.++. +..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+.++++ +.. ...|+.|+++.+.+
T Consensus 118 ~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~--l~~L~~L~Ls~N~i----- 187 (605)
T 1m9s_A 118 HNGISDING-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAG--LTKLQNLYLSKNHI----- 187 (605)
T ss_dssp TSCCCCCGG-GGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTT--CTTCCEEECCSSCC-----
T ss_pred CCCCCCCcc-ccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hcc--CCCCCEEECcCCCC-----
Confidence 999998754 77889999999999999988 478899999999999999999766 222 35677888877763
Q ss_pred CCCCCCCcCCcccccccccccCCcceeccc--cccccCh
Q psy3787 162 DGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPE 198 (263)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~ 198 (263)
..+ +.+..+++|+.|+++ .+...|.
T Consensus 188 -----------~~l-~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 188 -----------SDL-RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp -----------CBC-GGGTTCTTCSEEECCSEEEECCCC
T ss_pred -----------CCC-hHHccCCCCCEEEccCCcCcCCcc
Confidence 333 358889999999999 6665543
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=6.9e-17 Score=128.81 Aligned_cols=146 Identities=25% Similarity=0.378 Sum_probs=91.0
Q ss_pred CEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec
Q psy3787 6 KTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN 82 (263)
Q Consensus 6 ~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 82 (263)
+.++++++.++. +|. +. ++++.|++++|.++.++ .+..+++|++|++++|.+..+.+..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~~--iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTE--IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSS--CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCc--CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 345666666665 444 22 56777777777776555 366667777777777777766666667777777777777
Q ss_pred CcCcccccc-ccCCCCcCEEEccCCcCCCc-cccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcc
Q psy3787 83 NKISEVSSN-VGDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDY 156 (263)
Q Consensus 83 ~~l~~lp~~-~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~ 156 (263)
|+++.+|.. +..+++|++|++++|.++.+ +..+..+++|+.|++++|.+++++...+... ..++.+++.++++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL-RAIQTMHLAQNPF 164 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-TTCCEEECCSSCE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCC-CCCCEEEeCCCCc
Confidence 777766554 45667777777777777665 3446667777777777777766654432221 2344444444444
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=1.5e-16 Score=124.63 Aligned_cols=149 Identities=19% Similarity=0.221 Sum_probs=125.9
Q ss_pred CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
+++|+.|++++|.+.. ++.+..+++|++|++++|.+..++.+..+++|++|++++|.++...+..+..+++|++|+++
T Consensus 43 l~~L~~L~l~~n~i~~--l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 43 MNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HHTCCEEEEESSCCSC--CTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred cCCccEEeccCCCccC--hHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 4578999999999986 66889999999999999999888888999999999999999997656668899999999999
Q ss_pred cCcCcc-ccccccCCCCcCEEEccCCc-CCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcc
Q psy3787 82 NNKISE-VSSNVGDLINLAILDLSDNE-LTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDY 156 (263)
Q Consensus 82 ~~~l~~-lp~~~~~l~~L~~L~l~~n~-l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~ 156 (263)
+|+++. .+..+..+++|++|++++|. ++.++ .+..+++|+.|++++|.++.++ .+.. ...++.+++.++.+
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~--l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIED--FPKLNQLYAFSQTI 193 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGG--CSSCCEEEECBC--
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-Hhcc--CCCCCEEEeeCccc
Confidence 999994 67778899999999999997 88887 6899999999999999999876 2222 24566677666553
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=1.8e-16 Score=126.40 Aligned_cols=147 Identities=25% Similarity=0.320 Sum_probs=75.5
Q ss_pred EEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc---CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec
Q psy3787 7 TLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN 82 (263)
Q Consensus 7 ~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 82 (263)
.+++++|.++. +|. + .+.++.|++++|.++.++ .+..+++|++|++++|.++.+++..|..+++|++|++++
T Consensus 15 ~l~~s~n~l~~--iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLNK--IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCSS--CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCccc--CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 45555555554 333 2 123455555555555442 145555555555555555555555555555555555555
Q ss_pred CcCccccc-cccCCCCcCEEEccCCcCCCc-cccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccc
Q psy3787 83 NKISEVSS-NVGDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHC 158 (263)
Q Consensus 83 ~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~ 158 (263)
|.++.++. .+..+++|++|++++|.++.+ |..+..+++|+.|++++|.++++++..+.. ...++.+++.++.+.|
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT-LHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTT-CTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcC-CCCCCEEEecCcCCcC
Confidence 55554433 245555555555555555544 334555555555555555555553333222 1244455555555443
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=126.87 Aligned_cols=130 Identities=27% Similarity=0.408 Sum_probs=104.9
Q ss_pred CCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 4 HLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
.+++|++++|+++....+. +.++++|+.|++++|.++.++ .+..+++|++|++++|.++.+++..|..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 4678888888887732222 778888888888888888665 4788888888888888888888888888888888888
Q ss_pred ecCcCccc-cccccCCCCcCEEEccCCcCCCc-cccccCCCcccEEEecCCCCCC
Q psy3787 81 KNNKISEV-SSNVGDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNPIKT 133 (263)
Q Consensus 81 ~~~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~ 133 (263)
++|+++.+ |..+..+++|++|++++|.++.+ |..+..+++|+.+++++|++..
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 88888866 56678888888888888888877 5668888888888888888765
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=3.2e-16 Score=128.34 Aligned_cols=126 Identities=30% Similarity=0.378 Sum_probs=114.4
Q ss_pred CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
+++|+.|++++|++.. ++.+..+++|+.|++++|.++.++.+..+++|++|++++|.++++++ +.. ++|++|+++
T Consensus 40 l~~L~~L~l~~n~i~~--l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~ 114 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQS--LAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNG--IPS-ACLSRLFLD 114 (263)
T ss_dssp HTTCSEEECTTSCCCC--CTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTT--CCC-SSCCEEECC
T ss_pred cCcCcEEECcCCCccc--chHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCc--ccc-CcccEEEcc
Confidence 5789999999999987 67899999999999999999988889999999999999999998765 333 899999999
Q ss_pred cCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCc
Q psy3787 82 NNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTV 134 (263)
Q Consensus 82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~ 134 (263)
+|+++.++ .+..+++|++|++++|.++.++ .++.+++|+.|++++|.++++
T Consensus 115 ~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 115 NNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp SSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch
Confidence 99999886 4789999999999999999887 688999999999999998887
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=3e-16 Score=125.08 Aligned_cols=131 Identities=29% Similarity=0.394 Sum_probs=117.1
Q ss_pred CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
++++.|++++|++.......|.++++|+.|++++|.++.+. .|..+++|++|++++|.++.+++..|..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 46899999999999832224999999999999999999763 5899999999999999999999988899999999999
Q ss_pred ecCcCccc-cccccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCC
Q psy3787 81 KNNKISEV-SSNVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKT 133 (263)
Q Consensus 81 ~~~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~ 133 (263)
++|+++.+ |..+..+++|++|++++|.++.++. .+..+++|+.+++++|++..
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 99999977 5668899999999999999998865 48899999999999998865
No 109
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.66 E-value=9.1e-17 Score=123.56 Aligned_cols=128 Identities=20% Similarity=0.204 Sum_probs=83.8
Q ss_pred CCCCCEEEeecCccCCCCccccCCCC-CCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMR-SLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
+++|++|++++|++.. ++.+..+. +|++|++++|.++.++.+..+++|++|++++|.++.+++..+..+++|++|++
T Consensus 18 ~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred cCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 3456677777776665 45544443 67777777777666666666677777777777776666555566677777777
Q ss_pred ecCcCccccc--cccCCCCcCEEEccCCcCCCcccc----ccCCCcccEEEecCCCC
Q psy3787 81 KNNKISEVSS--NVGDLINLAILDLSDNELTDVPCE----LSSLFHLKSLFLGGNPI 131 (263)
Q Consensus 81 ~~~~l~~lp~--~~~~l~~L~~L~l~~n~l~~l~~~----~~~l~~L~~L~l~~n~l 131 (263)
++|+++.+|. .+..+++|+++++++|.+..+|.. ++.+++|+.+++++|.+
T Consensus 96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 96 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 7777766665 566666777777777766666553 66666777776666643
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=2.3e-16 Score=117.86 Aligned_cols=125 Identities=26% Similarity=0.186 Sum_probs=86.0
Q ss_pred CCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 3 SHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
++++.|++++|.+....+|. +..+++|++|++++|.++.++.+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 45777777777776223554 67777777777777777766666777777777777777776555556667777777777
Q ss_pred cCcCcccc--ccccCCCCcCEEEccCCcCCCccc----cccCCCcccEEEec
Q psy3787 82 NNKISEVS--SNVGDLINLAILDLSDNELTDVPC----ELSSLFHLKSLFLG 127 (263)
Q Consensus 82 ~~~l~~lp--~~~~~l~~L~~L~l~~n~l~~l~~----~~~~l~~L~~L~l~ 127 (263)
+|.++.++ ..+..+++|+++++++|.++.++. .++.+++|+.|+++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77777654 556677777777777777776654 46667777776654
No 111
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=2.3e-16 Score=146.47 Aligned_cols=118 Identities=25% Similarity=0.354 Sum_probs=105.9
Q ss_pred cCCCCCCcEEEecCCCCCCCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEE
Q psy3787 23 FIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAIL 101 (263)
Q Consensus 23 ~~~l~~L~~L~l~~n~l~~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L 101 (263)
+..++.|+.|+|++|.+..+| .+..+++|++|++++|.++.++ ..+..+++|++|++++|+++.+|..++.+.+|++|
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 888999999999999999887 4668899999999999999776 45889999999999999999999999999999999
Q ss_pred EccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHh
Q psy3787 102 DLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQD 141 (263)
Q Consensus 102 ~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 141 (263)
++++|.++.+|..++.+++|+.|++++|.+++.++..+..
T Consensus 299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp ECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred ECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 9999999999989999999999999999999866655544
No 112
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.65 E-value=3.3e-17 Score=141.28 Aligned_cols=207 Identities=14% Similarity=0.105 Sum_probs=149.7
Q ss_pred CCCCCEEEeecCccCCC--Cccc--------cCCCCCCcEEEecCCCCCC-----Cc-CCCCCCCCcEEEecCCCCCCCc
Q psy3787 2 LSHLKTLDLSHNKLVSD--SLPL--------FIDMRSLTELNLSYNQLTM-----LP-VCTDCKNLTHLLLGFNKINNME 65 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~--~~~~--------~~~l~~L~~L~l~~n~l~~-----l~-~~~~~~~L~~L~l~~n~~~~~~ 65 (263)
+++|+.|++++|.+... .+|. +..+++|++|++++|.++. ++ .+..+++|++|++++|.++...
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 138 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA 138 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence 67899999999765531 1232 3789999999999999986 33 4677899999999999987544
Q ss_pred hhhhh----CC---------CCccEEEeecCcCc--ccc---ccccCCCCcCEEEccCCcCC--C---c-cccccCCCcc
Q psy3787 66 NDYFL----TL---------TKLSLLNLKNNKIS--EVS---SNVGDLINLAILDLSDNELT--D---V-PCELSSLFHL 121 (263)
Q Consensus 66 ~~~~~----~l---------~~L~~L~l~~~~l~--~lp---~~~~~l~~L~~L~l~~n~l~--~---l-~~~~~~l~~L 121 (263)
+..+. .+ ++|++|++++|+++ .++ ..+..+++|++|++++|.++ . + +..+..+++|
T Consensus 139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L 218 (386)
T 2ca6_A 139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc
Confidence 33333 33 89999999999997 444 45677889999999999998 2 3 3378899999
Q ss_pred cEEEecCCCCCC-----cchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccc--cccCCcceeccc--c
Q psy3787 122 KSLFLGGNPIKT-----VRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDK--YKLDRTKTLTLC--K 192 (263)
Q Consensus 122 ~~L~l~~n~l~~-----~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~--~ 192 (263)
+.|++++|.++. ++..+.. ...++.|+++.+.+ .+.+ ...++..+ ..+++|++|+++ .
T Consensus 219 ~~L~Ls~n~l~~~g~~~l~~~l~~--~~~L~~L~L~~n~i-----~~~~------~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 219 KVLDLQDNTFTHLGSSALAIALKS--WPNLRELGLNDCLL-----SARG------AAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp CEEECCSSCCHHHHHHHHHHHGGG--CTTCCEEECTTCCC-----CHHH------HHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred cEEECcCCCCCcHHHHHHHHHHcc--CCCcCEEECCCCCC-----chhh------HHHHHHHHhhccCCCeEEEECcCCc
Confidence 999999999853 3322111 34566777766653 0000 11234455 348999999999 7
Q ss_pred ccc-----cChhHHhhcCCccceeEEEeccCCcccccC
Q psy3787 193 VIN-----IPESVYMRGMSSQECTIEINIDKYKLDRTK 225 (263)
Q Consensus 193 ~~~-----l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip 225 (263)
++. +|..++...+ +|+. |++++|+++...
T Consensus 286 i~~~g~~~l~~~l~~~l~---~L~~-L~l~~N~l~~~~ 319 (386)
T 2ca6_A 286 IELDAVRTLKTVIDEKMP---DLLF-LELNGNRFSEED 319 (386)
T ss_dssp CBHHHHHHHHHHHHHHCT---TCCE-EECTTSBSCTTS
T ss_pred CCHHHHHHHHHHHHhcCC---CceE-EEccCCcCCcch
Confidence 766 8877755322 5999 999999998555
No 113
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.64 E-value=1e-16 Score=137.19 Aligned_cols=204 Identities=18% Similarity=0.165 Sum_probs=145.8
Q ss_pred EEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc------CCCCCC-CCcEEEecCCCCCCCchhhhhCC-----C
Q psy3787 7 TLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP------VCTDCK-NLTHLLLGFNKINNMENDYFLTL-----T 73 (263)
Q Consensus 7 ~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~------~~~~~~-~L~~L~l~~n~~~~~~~~~~~~l-----~ 73 (263)
.+.+++|.+.+ .+|. +...++|++|++++|.++..+ .+..++ +|++|++++|.++...+..+..+ +
T Consensus 2 ~~~ls~n~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSN-PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCC-HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchH-HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 35788888886 3555 444556999999999998654 356677 89999999999998777666664 8
Q ss_pred CccEEEeecCcCcccc-c----cccCC-CCcCEEEccCCcCCCccc-c----ccC-CCcccEEEecCCCCCCcchHHHHh
Q psy3787 74 KLSLLNLKNNKISEVS-S----NVGDL-INLAILDLSDNELTDVPC-E----LSS-LFHLKSLFLGGNPIKTVRNDILQD 141 (263)
Q Consensus 74 ~L~~L~l~~~~l~~lp-~----~~~~l-~~L~~L~l~~n~l~~l~~-~----~~~-l~~L~~L~l~~n~l~~~~~~~~~~ 141 (263)
+|++|++++|.++..+ . .+... ++|++|++++|.++..+. . +.. .++|+.|++++|.++......+..
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 9999999999998543 2 24445 899999999999986542 2 344 369999999999998755544332
Q ss_pred H----HHHhhhhhCCCCcccccccCCCCCCCcCCccccccccccc-CCcceeccc--cccc-----cChhHHhhcCCccc
Q psy3787 142 S----KRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKL-DRTKTLTLC--KVIN-----IPESVYMRGMSSQE 209 (263)
Q Consensus 142 ~----~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~--~~~~-----l~~~~~~~~~~~~~ 209 (263)
. ...++.|+++.+.+ .+.+ ...+...+..+ ++|++|+++ .++. ++..+..... +
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l-----~~~~------~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~---~ 226 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNL-----ASKN------CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPN---H 226 (362)
T ss_dssp HHHTSCTTCCEEECTTSCG-----GGSC------HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCT---T
T ss_pred HHhcCCccccEeeecCCCC-----chhh------HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCC---C
Confidence 2 12677777776663 1111 11122234445 599999999 7766 5555555332 6
Q ss_pred eeEEEeccCCcccccCc
Q psy3787 210 CTIEINIDKYKLDRTKT 226 (263)
Q Consensus 210 L~~~L~ls~n~l~~ip~ 226 (263)
|+. |++++|+++..+.
T Consensus 227 L~~-L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 227 VVS-LNLCLNCLHGPSL 242 (362)
T ss_dssp CCE-EECCSSCCCCCCH
T ss_pred ceE-EECcCCCCCcHHH
Confidence 999 9999999987655
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=3.8e-15 Score=116.16 Aligned_cols=124 Identities=31% Similarity=0.367 Sum_probs=111.1
Q ss_pred CEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcC---CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 6 KTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPV---CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 6 ~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~---~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
+.+++++|.++. +|. +. .+++.|++++|.++.++. +..+++|++|++++|.++++.+..|..+++|++|+++
T Consensus 11 ~~l~~s~~~l~~--ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKE--IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSS--CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCc--CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 679999999977 666 43 389999999999998763 7899999999999999999988889999999999999
Q ss_pred cCcCccccc-cccCCCCcCEEEccCCcCCCc-cccccCCCcccEEEecCCCCCC
Q psy3787 82 NNKISEVSS-NVGDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNPIKT 133 (263)
Q Consensus 82 ~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~ 133 (263)
+|+++.++. .+..+++|++|++++|.++.+ |..+..+++|+.+++++|++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 999997765 488999999999999999976 6679999999999999999986
No 115
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.61 E-value=2.8e-16 Score=132.71 Aligned_cols=218 Identities=15% Similarity=0.122 Sum_probs=157.4
Q ss_pred CCEEEeecCccCCCCccccCCC--CCCcEEEecCCCCCCCc-CCCCCCCCcEEEecCCCCCCC-chhhhhCCCCccEEEe
Q psy3787 5 LKTLDLSHNKLVSDSLPLFIDM--RSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNKINNM-ENDYFLTLTKLSLLNL 80 (263)
Q Consensus 5 L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~l~~n~l~~l~-~~~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l 80 (263)
++.++++++.+.. ..+..+ +.++.+++++|.+...+ .+..+++|++|++++|.+... .+..+..+++|++|++
T Consensus 49 ~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCCH---HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 6789999887652 225556 89999999999988554 567789999999999998754 5566889999999999
Q ss_pred ecCcCc-cccccccCCCCcCEEEccCC-cCCC--ccccccCCCcccEEEecCC-CCCCcc-hHHHHhHHH-HhhhhhCCC
Q psy3787 81 KNNKIS-EVSSNVGDLINLAILDLSDN-ELTD--VPCELSSLFHLKSLFLGGN-PIKTVR-NDILQDSKR-IISHIKTSR 153 (263)
Q Consensus 81 ~~~~l~-~lp~~~~~l~~L~~L~l~~n-~l~~--l~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~~~~-~l~~l~~~~ 153 (263)
++|.++ ..+..+..+++|++|++++| .++. ++..+..+++|+.|++++| .++... ...+.. .. .++.++++.
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-l~~~L~~L~l~~ 204 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH-VSETITQLNLSG 204 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH-SCTTCCEEECCS
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh-cccCCCEEEeCC
Confidence 999988 66778888999999999999 6773 6766889999999999999 887631 111111 33 667777765
Q ss_pred CcccccccCCCCCCCcCCcccccccccccCCcceeccc--c-cc-ccChhHHhhcCCccceeEEEeccCCc-ccccCccc
Q psy3787 154 LDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--K-VI-NIPESVYMRGMSSQECTIEINIDKYK-LDRTKTLT 228 (263)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~-~~-~l~~~~~~~~~~~~~L~~~L~ls~n~-l~~ip~~~ 228 (263)
+.. .+. ...++..+..+++|++|+++ . ++ ..+..+... ++|+. |++++|. +.......
T Consensus 205 ~~~---~~~---------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l----~~L~~-L~l~~~~~~~~~~~~~ 267 (336)
T 2ast_B 205 YRK---NLQ---------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL----NYLQH-LSLSRCYDIIPETLLE 267 (336)
T ss_dssp CGG---GSC---------HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC----TTCCE-EECTTCTTCCGGGGGG
T ss_pred Ccc---cCC---------HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC----CCCCE-eeCCCCCCCCHHHHHH
Confidence 531 000 13455566789999999999 4 44 445555444 46999 9999996 32111112
Q ss_pred cccccccccccccCC
Q psy3787 229 LCKVINIPESVYMNR 243 (263)
Q Consensus 229 ~~~~~~l~~~~~~~~ 243 (263)
...+.++..+.+.|+
T Consensus 268 l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 268 LGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGCTTCCEEECTTS
T ss_pred HhcCCCCCEEeccCc
Confidence 334566666677666
No 116
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.60 E-value=7.1e-17 Score=142.10 Aligned_cols=208 Identities=15% Similarity=0.081 Sum_probs=101.6
Q ss_pred CCCCCCcEEEecCCCCCCCc--CC-----CCCCCCcEEEecCCCCCCCc----hhhhhCCCCccEEEeecCcCccc----
Q psy3787 24 IDMRSLTELNLSYNQLTMLP--VC-----TDCKNLTHLLLGFNKINNME----NDYFLTLTKLSLLNLKNNKISEV---- 88 (263)
Q Consensus 24 ~~l~~L~~L~l~~n~l~~l~--~~-----~~~~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~~~l~~l---- 88 (263)
..+++|+.|++++|.+.... .+ ...++|++|++++|.++... +..+..+++|++|++++|.++..
T Consensus 167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 246 (461)
T 1z7x_W 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE 246 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHH
Confidence 34455555555555544211 11 02335666666666555431 33345556666666666665522
Q ss_pred -cc-cccCCCCcCEEEccCCcCCC-----ccccccCCCcccEEEecCCCCCCcchHHHHhH----HHHhhhhhCCCCccc
Q psy3787 89 -SS-NVGDLINLAILDLSDNELTD-----VPCELSSLFHLKSLFLGGNPIKTVRNDILQDS----KRIISHIKTSRLDYH 157 (263)
Q Consensus 89 -p~-~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~----~~~l~~l~~~~~~~~ 157 (263)
+. ....+++|++|++++|.++. ++..+..+++|+.|++++|.++..+...+... ...++.++++.+.+.
T Consensus 247 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 326 (461)
T 1z7x_W 247 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc
Confidence 12 22345666666666666664 45455556666777776666554333222221 023444444444320
Q ss_pred ccccCCCCCCCcCCcccccccccccCCcceeccc--ccccc-ChhHHhhcC-CccceeEEEeccCCccc-----ccCccc
Q psy3787 158 CQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINI-PESVYMRGM-SSQECTIEINIDKYKLD-----RTKTLT 228 (263)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l-~~~~~~~~~-~~~~L~~~L~ls~n~l~-----~ip~~~ 228 (263)
+.+ ...++..+..+++|++|+++ .++.. +..+..... ..++|+. |++++|+++ .+|. .
T Consensus 327 -----~~~------~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~-L~L~~n~i~~~~~~~l~~-~ 393 (461)
T 1z7x_W 327 -----AAC------CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV-LWLADCDVSDSSCSSLAA-T 393 (461)
T ss_dssp -----GGG------HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE-EECTTSCCCHHHHHHHHH-H
T ss_pred -----hHH------HHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEE-EECCCCCCChhhHHHHHH-H
Confidence 000 11234445566777777777 45433 222222111 1235777 777777776 3332 1
Q ss_pred cccccccccccccCCc
Q psy3787 229 LCKVINIPESVYMNRP 244 (263)
Q Consensus 229 ~~~~~~l~~~~~~~~~ 244 (263)
.....++..+.+.+|+
T Consensus 394 l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 394 LLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHCCCCCEEECCSSS
T ss_pred HHhCCCccEEECCCCC
Confidence 2223445555666654
No 117
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=1.1e-14 Score=113.55 Aligned_cols=124 Identities=31% Similarity=0.459 Sum_probs=108.8
Q ss_pred CEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecC
Q psy3787 6 KTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNN 83 (263)
Q Consensus 6 ~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 83 (263)
+.++++++.++. +|. + .++++.|++++|.++.+| .+..+++|++|++++|.++.+++..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~--ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV--LPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS--CCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc--CCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 568889998887 665 3 368999999999999887 5888999999999999999999888999999999999999
Q ss_pred cCccccc-cccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCC
Q psy3787 84 KISEVSS-NVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKT 133 (263)
Q Consensus 84 ~l~~lp~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~ 133 (263)
+++.++. .+..+++|++|++++|.++.+|. .+..+++|+.+++++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9998765 58899999999999999998876 48889999999999998765
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=1.1e-14 Score=110.92 Aligned_cols=110 Identities=27% Similarity=0.252 Sum_probs=84.2
Q ss_pred CCCCCcEEEecCCCCC--CCcC-CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCcc-ccccccCCCCcCE
Q psy3787 25 DMRSLTELNLSYNQLT--MLPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISE-VSSNVGDLINLAI 100 (263)
Q Consensus 25 ~l~~L~~L~l~~n~l~--~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~ 100 (263)
..++|+.|++++|.++ .+|. +..+++|++|++++|.+..+ ..+..+++|++|++++|+++. +|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3477888888888887 6664 57778888888888888776 447778888888888888886 6666666788888
Q ss_pred EEccCCcCCCcc--ccccCCCcccEEEecCCCCCCcch
Q psy3787 101 LDLSDNELTDVP--CELSSLFHLKSLFLGGNPIKTVRN 136 (263)
Q Consensus 101 L~l~~n~l~~l~--~~~~~l~~L~~L~l~~n~l~~~~~ 136 (263)
|++++|.++.++ ..+..+++|+.|++++|.+++++.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence 888888888765 567788888888888887776653
No 119
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=4.9e-14 Score=108.22 Aligned_cols=130 Identities=30% Similarity=0.385 Sum_probs=113.2
Q ss_pred CCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcC--CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec
Q psy3787 5 LKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN 82 (263)
Q Consensus 5 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 82 (263)
.+.++++++++.. +|. .-.++|+.|++++|.++.++. +..+++|++|++++|.++.+++..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~--~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS--VPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS--CCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc--CCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4678999998887 554 224799999999999998774 78899999999999999999988889999999999999
Q ss_pred CcCcccccc-ccCCCCcCEEEccCCcCCCcccc-ccCCCcccEEEecCCCCCCcchH
Q psy3787 83 NKISEVSSN-VGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRND 137 (263)
Q Consensus 83 ~~l~~lp~~-~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~ 137 (263)
|+++.+|.. +..+++|++|++++|.++.+|.. +..+++|+.+++++|++....+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 999988765 68899999999999999998765 68899999999999999885543
No 120
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.57 E-value=1.7e-16 Score=139.58 Aligned_cols=133 Identities=20% Similarity=0.222 Sum_probs=85.0
Q ss_pred CCCCCEEEeecCccCCCC---ccc-cCCCCCCcEEEecCCCCCCC--cC-CCCCC----CCcEEEecCCCCCC----Cch
Q psy3787 2 LSHLKTLDLSHNKLVSDS---LPL-FIDMRSLTELNLSYNQLTML--PV-CTDCK----NLTHLLLGFNKINN----MEN 66 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~---~~~-~~~l~~L~~L~l~~n~l~~l--~~-~~~~~----~L~~L~l~~n~~~~----~~~ 66 (263)
+++|++|++++|.++... ++. +..+++|++|++++|.+... .. ...++ +|++|++++|.++. ..+
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 467888888888876421 233 66778888888888877632 11 11222 68888888887774 235
Q ss_pred hhhhCCCCccEEEeecCcCccc-c----cc-ccCCCCcCEEEccCCcCCC-----ccccccCCCcccEEEecCCCCCCc
Q psy3787 67 DYFLTLTKLSLLNLKNNKISEV-S----SN-VGDLINLAILDLSDNELTD-----VPCELSSLFHLKSLFLGGNPIKTV 134 (263)
Q Consensus 67 ~~~~~l~~L~~L~l~~~~l~~l-p----~~-~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~ 134 (263)
..+..+++|++|++++|.++.. + .. .....+|++|++++|.++. ++..+..+++|+.|++++|.++..
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 5677778888888888877622 1 12 1234567777777777664 244455667777777777766553
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=6.2e-15 Score=113.23 Aligned_cols=116 Identities=22% Similarity=0.287 Sum_probs=103.0
Q ss_pred ccccCCCCCCcEEEecCCCCCCCcCCCCCC-CCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccc-cCCCC
Q psy3787 20 LPLFIDMRSLTELNLSYNQLTMLPVCTDCK-NLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLIN 97 (263)
Q Consensus 20 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~ 97 (263)
.+.+..+++|+.|++++|.++.++.+..+. +|++|++++|.++++ ..+..+++|++|++++|+++.+|..+ ..+++
T Consensus 12 ~~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 12 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp SCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred HHhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 445788999999999999999888776665 999999999999987 34888999999999999999988664 88999
Q ss_pred cCEEEccCCcCCCccc--cccCCCcccEEEecCCCCCCcchH
Q psy3787 98 LAILDLSDNELTDVPC--ELSSLFHLKSLFLGGNPIKTVRND 137 (263)
Q Consensus 98 L~~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~n~l~~~~~~ 137 (263)
|++|++++|.++.+|. .++.+++|+.+++++|++..++..
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~ 131 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY 131 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTH
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhH
Confidence 9999999999999887 789999999999999999887654
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=7.4e-15 Score=123.98 Aligned_cols=100 Identities=14% Similarity=0.000 Sum_probs=69.0
Q ss_pred CCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcc-eeccc-cccc
Q psy3787 118 LFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTK-TLTLC-KVIN 195 (263)
Q Consensus 118 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~-~~~~ 195 (263)
+++|+.+++.+|.++.++...+... ..|+.+.+..+- ..--...|.++++|+ .+++. .++.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~-~~L~~l~l~~ni----------------~~I~~~aF~~~~~L~~~l~l~~~l~~ 287 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQK-KYLLKIKLPHNL----------------KTIGQRVFSNCGRLAGTLELPASVTA 287 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTC-TTCCEEECCTTC----------------CEECTTTTTTCTTCCEEEEECTTCCE
T ss_pred cCCCeEEECCCCCcceecHhhhhCC-CCCCEEECCccc----------------ceehHHHhhCChhccEEEEEcccceE
Confidence 6677777777777777776665543 234444442221 111122478889999 99999 9999
Q ss_pred cChhHHhhcCCccceeEEEeccCCcccccCccccccccccccc
Q psy3787 196 IPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPES 238 (263)
Q Consensus 196 l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~ 238 (263)
+++..|.... +|+. +++++|.++.|+..++.+..++..+
T Consensus 288 I~~~aF~~c~---~L~~-l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 288 IEFGAFMGCD---NLRY-VLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp ECTTTTTTCT---TEEE-EEECSSCCCEECTTTTCTTCCCCEE
T ss_pred EchhhhhCCc---cCCE-EEeCCCccCccchhhhcCCcchhhh
Confidence 9887776554 7999 9999999999998887655555443
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.52 E-value=1.9e-14 Score=107.35 Aligned_cols=110 Identities=25% Similarity=0.258 Sum_probs=98.5
Q ss_pred CCCCCcEEEecCCCCC--CCcC-CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCcc-ccccccCCCCcCE
Q psy3787 25 DMRSLTELNLSYNQLT--MLPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISE-VSSNVGDLINLAI 100 (263)
Q Consensus 25 ~l~~L~~L~l~~n~l~--~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~ 100 (263)
..++++.|++++|.++ .+|. +..+++|++|++++|.+..+ ..+..+++|++|++++|.++. +|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 4578999999999998 6774 68899999999999999987 558899999999999999997 7877778999999
Q ss_pred EEccCCcCCCcc--ccccCCCcccEEEecCCCCCCcch
Q psy3787 101 LDLSDNELTDVP--CELSSLFHLKSLFLGGNPIKTVRN 136 (263)
Q Consensus 101 L~l~~n~l~~l~--~~~~~l~~L~~L~l~~n~l~~~~~ 136 (263)
|++++|.++.++ ..++.+++|+.+++++|.+++++.
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 999999999875 679999999999999999988775
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.47 E-value=2.9e-13 Score=105.53 Aligned_cols=105 Identities=29% Similarity=0.434 Sum_probs=96.3
Q ss_pred CCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787 3 SHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN 79 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 79 (263)
+++++|++++|.++. +|. +.++++|+.|++++|.++.++ .|..+++|++|++++|.+..+++..|..+++|+.|+
T Consensus 31 ~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 478999999999987 555 999999999999999999877 489999999999999999999998899999999999
Q ss_pred eecCcCcccccc-ccCCCCcCEEEccCCcCC
Q psy3787 80 LKNNKISEVSSN-VGDLINLAILDLSDNELT 109 (263)
Q Consensus 80 l~~~~l~~lp~~-~~~l~~L~~L~l~~n~l~ 109 (263)
+++|.++.+|.. +..+++|+.+++++|.+.
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 999999988774 788999999999999875
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=1.1e-14 Score=135.07 Aligned_cols=91 Identities=32% Similarity=0.410 Sum_probs=49.4
Q ss_pred CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEE
Q psy3787 45 CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSL 124 (263)
Q Consensus 45 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L 124 (263)
+..+..|+.|++++|.+..++... ..+++|++|++++|.++.+|..++.+.+|++|++++|.++.+|..++.+++|++|
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANI-FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGG-GGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred hccCCCCcEEECCCCCCCCCChhh-cCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 444555555555555555544442 2455555555555555555555555555555555555555555555555555555
Q ss_pred EecCCCCCCcch
Q psy3787 125 FLGGNPIKTVRN 136 (263)
Q Consensus 125 ~l~~n~l~~~~~ 136 (263)
++++|.++.+|.
T Consensus 299 ~L~~N~l~~lp~ 310 (727)
T 4b8c_D 299 YFFDNMVTTLPW 310 (727)
T ss_dssp ECCSSCCCCCCS
T ss_pred ECCCCCCCccCh
Confidence 555555555543
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.47 E-value=1.7e-13 Score=123.70 Aligned_cols=109 Identities=27% Similarity=0.262 Sum_probs=94.9
Q ss_pred CCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCCc
Q psy3787 28 SLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNE 107 (263)
Q Consensus 28 ~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~ 107 (263)
.|+.|++++|.++.+|.+..+++|+.|++++|.++.+|. .+..+++|+.|++++|+++.+| .++.+++|+.|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 588899999999988888888999999999999987755 5888999999999999999888 78889999999999999
Q ss_pred CCCc--cccccCCCcccEEEecCCCCCCcchHH
Q psy3787 108 LTDV--PCELSSLFHLKSLFLGGNPIKTVRNDI 138 (263)
Q Consensus 108 l~~l--~~~~~~l~~L~~L~l~~n~l~~~~~~~ 138 (263)
++.+ |..++.+++|+.|++++|+++++|+..
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 9877 778999999999999999998876643
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.46 E-value=2.1e-13 Score=106.15 Aligned_cols=108 Identities=25% Similarity=0.308 Sum_probs=93.3
Q ss_pred CcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchh-hhhCCCCccEEEeecCcCccc-cccccCCCCcCEEEccCC
Q psy3787 29 LTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMEND-YFLTLTKLSLLNLKNNKISEV-SSNVGDLINLAILDLSDN 106 (263)
Q Consensus 29 L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~n 106 (263)
-+.++++++.++.+|.- -...+++|++++|.+..+++. .+..+++|++|++++|+++.+ |..+..+.+|++|++++|
T Consensus 10 ~~~l~~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCEEEcCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 37899999999988851 123899999999999988764 588999999999999999977 678899999999999999
Q ss_pred cCCCccc-cccCCCcccEEEecCCCCCCcchH
Q psy3787 107 ELTDVPC-ELSSLFHLKSLFLGGNPIKTVRND 137 (263)
Q Consensus 107 ~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~ 137 (263)
.++.++. .+..+++|+.|++++|.++++++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 120 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPG 120 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHH
Confidence 9998754 489999999999999999886543
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.45 E-value=1.4e-13 Score=124.18 Aligned_cols=102 Identities=19% Similarity=0.285 Sum_probs=65.8
Q ss_pred CCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCC
Q psy3787 50 NLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGN 129 (263)
Q Consensus 50 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n 129 (263)
.|+.|++++|.+++++. +..+++|+.|++++|.++.+|..++.+++|+.|++++|.++.+| .++.+++|+.|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 46667777777666543 66666777777777777766666666777777777777776666 6666777777777777
Q ss_pred CCCCc--chHHHHhHHHHhhhhhCCCCcc
Q psy3787 130 PIKTV--RNDILQDSKRIISHIKTSRLDY 156 (263)
Q Consensus 130 ~l~~~--~~~~~~~~~~~l~~l~~~~~~~ 156 (263)
.++++ |..+... ..|+.++++++.+
T Consensus 519 ~l~~~~~p~~l~~l--~~L~~L~L~~N~l 545 (567)
T 1dce_A 519 RLQQSAAIQPLVSC--PRLVLLNLQGNSL 545 (567)
T ss_dssp CCCSSSTTGGGGGC--TTCCEEECTTSGG
T ss_pred CCCCCCCcHHHhcC--CCCCEEEecCCcC
Confidence 77665 4333322 2455566655554
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.45 E-value=9.7e-13 Score=100.90 Aligned_cols=108 Identities=33% Similarity=0.376 Sum_probs=96.1
Q ss_pred CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcC--CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
+++++|++++|++.......+..+++|++|++++|.++.++. +..+++|++|++++|.++++++..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 579999999999987322238899999999999999998874 788999999999999999999888889999999999
Q ss_pred ecCcCcccccc-ccCCCCcCEEEccCCcCCC
Q psy3787 81 KNNKISEVSSN-VGDLINLAILDLSDNELTD 110 (263)
Q Consensus 81 ~~~~l~~lp~~-~~~l~~L~~L~l~~n~l~~ 110 (263)
++|.++.+|.. +..+++|+++++++|.+..
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99999988776 5789999999999998874
No 130
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=1.4e-12 Score=99.83 Aligned_cols=109 Identities=28% Similarity=0.422 Sum_probs=96.3
Q ss_pred CcEEEecCCCCCCCcC-CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCcccccc-ccCCCCcCEEEccCC
Q psy3787 29 LTELNLSYNQLTMLPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSN-VGDLINLAILDLSDN 106 (263)
Q Consensus 29 L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~n 106 (263)
-+.++++++.++.+|. + .++|++|++++|.+.++++..|..+++|++|++++|+++.+|.. +..+++|++|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4789999999998885 3 37899999999999999888899999999999999999998876 578999999999999
Q ss_pred cCCCcccc-ccCCCcccEEEecCCCCCCcchHHH
Q psy3787 107 ELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDIL 139 (263)
Q Consensus 107 ~l~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~ 139 (263)
.++.+|.. +..+++|+.|++++|++...+.++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~ 125 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIM 125 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGH
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccccHH
Confidence 99998765 8999999999999999998765443
No 131
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=2.1e-12 Score=98.54 Aligned_cols=109 Identities=29% Similarity=0.393 Sum_probs=94.2
Q ss_pred CCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCcccccc-ccCCCCcCEEEccCC
Q psy3787 28 SLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSN-VGDLINLAILDLSDN 106 (263)
Q Consensus 28 ~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~n 106 (263)
..+.+++++|.++.+|.-. .+++++|++++|.+.++++..|..+++|++|++++|+++.+|.. +..+++|++|++++|
T Consensus 10 ~~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4578999999999888421 37899999999999999888899999999999999999988765 588999999999999
Q ss_pred cCCCccc-cccCCCcccEEEecCCCCCCcchH
Q psy3787 107 ELTDVPC-ELSSLFHLKSLFLGGNPIKTVRND 137 (263)
Q Consensus 107 ~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~ 137 (263)
.++.++. .+..+++|+.|++++|++.....+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~ 120 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD 120 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence 9998876 488999999999999999876543
No 132
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=4e-12 Score=97.34 Aligned_cols=104 Identities=25% Similarity=0.320 Sum_probs=92.7
Q ss_pred CEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec
Q psy3787 6 KTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN 82 (263)
Q Consensus 6 ~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 82 (263)
+.+++++|+++. +|. +. ++|+.|++++|.++.++ .+..+++|++|++++|.+..+++..|..+++|++|++++
T Consensus 15 ~~l~~~~n~l~~--iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLAS--VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSS--CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCc--cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 678999999987 776 43 89999999999999875 488999999999999999999988888999999999999
Q ss_pred CcCcccccc-ccCCCCcCEEEccCCcCCCccc
Q psy3787 83 NKISEVSSN-VGDLINLAILDLSDNELTDVPC 113 (263)
Q Consensus 83 ~~l~~lp~~-~~~l~~L~~L~l~~n~l~~l~~ 113 (263)
|+++.+|.. +..+++|++|++++|.+...+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 999998875 8899999999999999885543
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=3.3e-12 Score=97.41 Aligned_cols=102 Identities=28% Similarity=0.317 Sum_probs=91.7
Q ss_pred CCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 5 LKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 5 L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
.+.+++++|.++. +|. + .+++++|++++|.++.++ .+..+++|++|++++|.++.+++..|..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~~--ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLAS--VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCc--cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4789999999988 665 4 389999999999999875 38899999999999999999999888999999999999
Q ss_pred cCcCcccccc-ccCCCCcCEEEccCCcCCC
Q psy3787 82 NNKISEVSSN-VGDLINLAILDLSDNELTD 110 (263)
Q Consensus 82 ~~~l~~lp~~-~~~l~~L~~L~l~~n~l~~ 110 (263)
+|+++.+|.. +..+++|++|++++|.+.-
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 9999988764 8899999999999998873
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=7.5e-15 Score=114.96 Aligned_cols=129 Identities=26% Similarity=0.359 Sum_probs=104.9
Q ss_pred CCCEEEeecCccCCCC-----cc-ccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccE
Q psy3787 4 HLKTLDLSHNKLVSDS-----LP-LFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSL 77 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~~-----~~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 77 (263)
.++.++++.+.+.... +| .+..+++|++|++++|.++.+|.+..+++|++|++++|.+..++. .+..+++|++
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~ 97 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIEN-LDAVADTLEE 97 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSE
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccc-hhhcCCcCCE
Confidence 4444555555554421 33 388899999999999999998888888999999999999987765 4666789999
Q ss_pred EEeecCcCccccccccCCCCcCEEEccCCcCCCccc--cccCCCcccEEEecCCCCCCc
Q psy3787 78 LNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPC--ELSSLFHLKSLFLGGNPIKTV 134 (263)
Q Consensus 78 L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~n~l~~~ 134 (263)
|++++|+++.+| .+..+++|++|++++|.++.++. .+..+++|+.+++++|++.+.
T Consensus 98 L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 98 LWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred EECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 999999999887 57788899999999999998764 688999999999999987664
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=1.8e-14 Score=112.77 Aligned_cols=126 Identities=27% Similarity=0.328 Sum_probs=107.7
Q ss_pred CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcC-CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
+++|++|++++|.+.. +|.+.++++|++|++++|.++.+|. +..+++|++|++++|.+++++ .+..+++|+.|++
T Consensus 47 l~~L~~L~ls~n~l~~--l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l 122 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYM 122 (198)
T ss_dssp TTTCSEEECSEEEESC--CCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEE
T ss_pred CCCCCEEECCCCCCcc--ccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC--ccccCCCCCEEEC
Confidence 6789999999999998 6688899999999999999998886 455689999999999999865 4788999999999
Q ss_pred ecCcCccccc--cccCCCCcCEEEccCCcCCCc-cc----------cccCCCcccEEEecCCCCCC
Q psy3787 81 KNNKISEVSS--NVGDLINLAILDLSDNELTDV-PC----------ELSSLFHLKSLFLGGNPIKT 133 (263)
Q Consensus 81 ~~~~l~~lp~--~~~~l~~L~~L~l~~n~l~~l-~~----------~~~~l~~L~~L~l~~n~l~~ 133 (263)
++|.++.++. .+..+++|+++++++|.+... |. .+..+++|+.++ ++.++.
T Consensus 123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 9999998765 688999999999999988754 32 278889999886 666655
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.28 E-value=9.7e-13 Score=110.94 Aligned_cols=173 Identities=11% Similarity=0.155 Sum_probs=98.7
Q ss_pred CCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccc-cccCCCCcCEEEccCCc----CCCc-cccccCCCcc
Q psy3787 48 CKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSS-NVGDLINLAILDLSDNE----LTDV-PCELSSLFHL 121 (263)
Q Consensus 48 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~n~----l~~l-~~~~~~l~~L 121 (263)
+.+|+.+++.+ .+..++..+|.++.+|+.+++.+|.+..++. .+..+.++..+....+. ...+ ...+..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 66677777766 6666666667677777777777776665543 34555555555444321 1111 1123333333
Q ss_pred c-EEEecCCCCCCcchHHHHh--------------------------HHHHhhhhhCCCCcccccccCCCCCCCcCCccc
Q psy3787 122 K-SLFLGGNPIKTVRNDILQD--------------------------SKRIISHIKTSRLDYHCQNVDGGGMSSQESTSE 174 (263)
Q Consensus 122 ~-~L~l~~n~l~~~~~~~~~~--------------------------~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (263)
+ .+.+.. ...++...+.. ....++.+++..+. ...
T Consensus 179 ~~~i~~~~--~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~----------------i~~ 240 (329)
T 3sb4_A 179 ETTIQVGA--MGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN----------------ATT 240 (329)
T ss_dssp EEEEEECT--TCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC----------------CCE
T ss_pred ceeEEecC--CCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC----------------cce
Confidence 3 222211 11122211111 01233444443333 233
Q ss_pred ccc-cccccCCcceeccc-cccccChhHHhhcCCcccee-EEEeccCCcccccCccccccccccccccccCCc
Q psy3787 175 INI-DKYKLDRTKTLTLC-KVINIPESVYMRGMSSQECT-IEINIDKYKLDRTKTLTLCKVINIPESVYMNRP 244 (263)
Q Consensus 175 ~~~-~~~~~~~L~~L~l~-~~~~l~~~~~~~~~~~~~L~-~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~ 244 (263)
++. .+.++.+|+++++. +++.+++..|.... +|+ . +++.+ .++.|+..++.++.++..+.+.+|.
T Consensus 241 I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~---~L~~~-l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 241 IPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCG---RLAGT-LELPA-SVTAIEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp ECTTTTTTCTTCCEEECCTTCCEECTTTTTTCT---TCCEE-EEECT-TCCEECTTTTTTCTTEEEEEECSSC
T ss_pred ecHhhhhCCCCCCEEECCcccceehHHHhhCCh---hccEE-EEEcc-cceEEchhhhhCCccCCEEEeCCCc
Confidence 433 37788899999999 88889888776655 788 8 99988 7888988888777777777765554
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=7.2e-13 Score=113.61 Aligned_cols=131 Identities=20% Similarity=0.212 Sum_probs=63.1
Q ss_pred CCCCEEEeecCccCCCCccc----cC-CCCCCcEEEecCCCCCC--CcC-CCCCCCCcEEEecCCCCCCCchhhh-----
Q psy3787 3 SHLKTLDLSHNKLVSDSLPL----FI-DMRSLTELNLSYNQLTM--LPV-CTDCKNLTHLLLGFNKINNMENDYF----- 69 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~----~~-~l~~L~~L~l~~n~l~~--l~~-~~~~~~L~~L~l~~n~~~~~~~~~~----- 69 (263)
++|+.|++++|.++...... +. ..++|+.|++++|.++. +.. ...+++|+.|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 34566666666655422111 11 22456666666665542 111 1223455566666665554332222
Q ss_pred hCCCCccEEEeecCcCcc-----ccccccCCCCcCEEEccCCcCCC-----ccccccCCCcccEEEecCCCCCC
Q psy3787 70 LTLTKLSLLNLKNNKISE-----VSSNVGDLINLAILDLSDNELTD-----VPCELSSLFHLKSLFLGGNPIKT 133 (263)
Q Consensus 70 ~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~ 133 (263)
...++|++|++++|.++. ++..+...++|++|++++|.++. ++..+...++|+.|++++|.++.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 123456666666665542 23333445556666666655542 22334445556666666555544
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.22 E-value=6.7e-11 Score=102.36 Aligned_cols=46 Identities=11% Similarity=-0.010 Sum_probs=26.8
Q ss_pred ccccCCcceeccc-cccccChhHHhhcCCccceeEEEeccCCcccccCcccc
Q psy3787 179 KYKLDRTKTLTLC-KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTL 229 (263)
Q Consensus 179 ~~~~~~L~~L~l~-~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~ 229 (263)
+.++.+|+.+++. .++.++...|.... |+. +++++|.+..++...+
T Consensus 319 F~~c~~L~~l~lp~~l~~I~~~aF~~~~----L~~-l~l~~n~~~~l~~~~F 365 (401)
T 4fdw_A 319 LGGNRKVTQLTIPANVTQINFSAFNNTG----IKE-VKVEGTTPPQVFEKVW 365 (401)
T ss_dssp TTTCCSCCEEEECTTCCEECTTSSSSSC----CCE-EEECCSSCCBCCCSSC
T ss_pred hcCCCCccEEEECccccEEcHHhCCCCC----CCE-EEEcCCCCcccccccc
Confidence 4555666666666 66666555554333 666 6666666555555444
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.17 E-value=1.8e-10 Score=99.63 Aligned_cols=61 Identities=7% Similarity=-0.010 Sum_probs=48.6
Q ss_pred cccccCCcceeccc-cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCCc
Q psy3787 178 DKYKLDRTKTLTLC-KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRP 244 (263)
Q Consensus 178 ~~~~~~~L~~L~l~-~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~ 244 (263)
.+.++++|+.+++. .++.++...|.... +|+. +.+..| ++.|+..++... ++..+.+.+|.
T Consensus 295 aF~~c~~L~~l~l~~~i~~I~~~aF~~c~---~L~~-l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 295 CLEGCPKLARFEIPESIRILGQGLLGGNR---KVTQ-LTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TTTTCTTCCEECCCTTCCEECTTTTTTCC---SCCE-EEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred HhhCCccCCeEEeCCceEEEhhhhhcCCC---CccE-EEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 47788899999999 88888887776543 6998 999655 888888888777 78888887764
No 140
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=1.4e-10 Score=98.29 Aligned_cols=103 Identities=23% Similarity=0.270 Sum_probs=66.8
Q ss_pred EEEecCC-CCCCCcCCCCCCCCcEEEecC-CCCCCCchhhhhCCCCccEEEeecCcCccccc-cccCCCCcCEEEccCCc
Q psy3787 31 ELNLSYN-QLTMLPVCTDCKNLTHLLLGF-NKINNMENDYFLTLTKLSLLNLKNNKISEVSS-NVGDLINLAILDLSDNE 107 (263)
Q Consensus 31 ~L~l~~n-~l~~l~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~n~ 107 (263)
.++++++ .++.+|.+..+.+|+.|++++ |.+..+++..|..+++|+.|++++|+++.++. .+..+++|+.|++++|.
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 4566665 666666666666677777764 67776666666677777777777777775543 45667777777777777
Q ss_pred CCCccccccCCCcccEEEecCCCCCC
Q psy3787 108 LTDVPCELSSLFHLKSLFLGGNPIKT 133 (263)
Q Consensus 108 l~~l~~~~~~l~~L~~L~l~~n~l~~ 133 (263)
++.+|..+.....|+.|++.+|.+..
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred cceeCHHHcccCCceEEEeeCCCccC
Confidence 77665543222237777777776665
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.16 E-value=1.6e-11 Score=111.16 Aligned_cols=130 Identities=18% Similarity=0.175 Sum_probs=59.7
Q ss_pred CCCCEEEeecCccCCCC---ccc-cCCCCCCcEEEecCCCCCCCc------CCCCCCCCcEEEecCCCCCCCchhhhhCC
Q psy3787 3 SHLKTLDLSHNKLVSDS---LPL-FIDMRSLTELNLSYNQLTMLP------VCTDCKNLTHLLLGFNKINNMENDYFLTL 72 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~---~~~-~~~l~~L~~L~l~~n~l~~l~------~~~~~~~L~~L~l~~n~~~~~~~~~~~~l 72 (263)
++|++|++++|.+.... ++. +..+++|+.|++++|.++.+. .+..+++|+.|++++|.+.+++ ..+..+
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~ 242 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAA 242 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHC
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhh
Confidence 44555555555443321 111 334445555555555444211 1233455555555555444432 334444
Q ss_pred CCccEEEeecCcCc----cccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCC
Q psy3787 73 TKLSLLNLKNNKIS----EVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKT 133 (263)
Q Consensus 73 ~~L~~L~l~~~~l~----~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~ 133 (263)
++|+.++++..... ..+..+..+.+|+.++++++....+|..+..+++|+.|++++|.++.
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~ 307 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET 307 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCH
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCH
Confidence 55555555432111 11223344444555555444344455556666677777777766443
No 142
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=1.2e-10 Score=98.74 Aligned_cols=101 Identities=27% Similarity=0.233 Sum_probs=89.1
Q ss_pred EEEeecC-ccCCCCccccCCCCCCcEEEecC-CCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec
Q psy3787 7 TLDLSHN-KLVSDSLPLFIDMRSLTELNLSY-NQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN 82 (263)
Q Consensus 7 ~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~-n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 82 (263)
.++++++ .++. +|.+..+++|+.|+|++ |.+..++ .|..+++|+.|++++|.+.++++..|..+++|+.|++++
T Consensus 12 ~v~~~~~n~l~~--ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS--LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT--TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc--cCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 5688887 8887 66688899999999996 9999877 489999999999999999999999999999999999999
Q ss_pred CcCccccccccCCCCcCEEEccCCcCC
Q psy3787 83 NKISEVSSNVGDLINLAILDLSDNELT 109 (263)
Q Consensus 83 ~~l~~lp~~~~~l~~L~~L~l~~n~l~ 109 (263)
|+++.+|..+.....|+.|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCcc
Confidence 999999876544444999999999887
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.15 E-value=1.8e-11 Score=110.76 Aligned_cols=129 Identities=13% Similarity=0.132 Sum_probs=63.8
Q ss_pred CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEec---------------------------CCCCCCCcC-CCCCCCCc
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLS---------------------------YNQLTMLPV-CTDCKNLT 52 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~---------------------------~n~l~~l~~-~~~~~~L~ 52 (263)
+++|++|++++|.+.. ++. +.++++|+.|+++ ++....+|. +..+++|+
T Consensus 219 ~~~L~~L~L~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR 296 (592)
T ss_dssp CTTCCEEECSSCBGGG--GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCC
T ss_pred CCCCcEEeccCccHHH--HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCc
Confidence 4567777777766544 333 4444444444444 332223332 34456666
Q ss_pred EEEecCCCCCCCch-hhhhCCCCccEEEeecCcCc--cccccccCCCCcCEEEccC-----------CcCCC--cccccc
Q psy3787 53 HLLLGFNKINNMEN-DYFLTLTKLSLLNLKNNKIS--EVSSNVGDLINLAILDLSD-----------NELTD--VPCELS 116 (263)
Q Consensus 53 ~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~-----------n~l~~--l~~~~~ 116 (263)
+|++++|.++.... ..+..+++|+.|+++ +.+. .++.....+++|++|++++ +.++. ++....
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~ 375 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh
Confidence 66776666543222 224556666666666 2222 2233334455566666662 34431 222233
Q ss_pred CCCcccEEEecCCCCCC
Q psy3787 117 SLFHLKSLFLGGNPIKT 133 (263)
Q Consensus 117 ~l~~L~~L~l~~n~l~~ 133 (263)
.+++|+.|++..|.++.
T Consensus 376 ~~~~L~~L~l~~~~l~~ 392 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITN 392 (592)
T ss_dssp HCTTCSEEEEEESCCCH
T ss_pred hCccCeEEEeecCCccH
Confidence 45566666665555544
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.05 E-value=4.7e-12 Score=114.63 Aligned_cols=128 Identities=18% Similarity=0.155 Sum_probs=79.4
Q ss_pred CCCCCEEEeecCccC-CCCc-------------cc-cCCCCCCcEEEecCCCCCCC--cCCC-CCCCCcEEEecCC-CCC
Q psy3787 2 LSHLKTLDLSHNKLV-SDSL-------------PL-FIDMRSLTELNLSYNQLTML--PVCT-DCKNLTHLLLGFN-KIN 62 (263)
Q Consensus 2 l~~L~~L~l~~n~~~-~~~~-------------~~-~~~l~~L~~L~l~~n~l~~l--~~~~-~~~~L~~L~l~~n-~~~ 62 (263)
+++|+.|+++++... .... +. ...+++|+.|++++|.++.. ..+. .+++|++|++++| .++
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 567888888886421 1111 11 34577888888888877632 1232 4678888888887 444
Q ss_pred CC-chhhhhCCCCccEEEeecCcCcc-----ccccccCCCCcCEEEccCCc--CC--CccccccCCCcccEEEecCC
Q psy3787 63 NM-ENDYFLTLTKLSLLNLKNNKISE-----VSSNVGDLINLAILDLSDNE--LT--DVPCELSSLFHLKSLFLGGN 129 (263)
Q Consensus 63 ~~-~~~~~~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~n~--l~--~l~~~~~~l~~L~~L~l~~n 129 (263)
.. .+..+..+++|++|++++|.++. ++.....+++|+.|+++++. +. .++..+..+++|+.|++++|
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 32 23334467888888888887653 22333466788888888775 22 12222345678888888877
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.02 E-value=1.5e-11 Score=111.38 Aligned_cols=40 Identities=5% Similarity=0.032 Sum_probs=21.0
Q ss_pred cccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCccc
Q psy3787 180 YKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLD 222 (263)
Q Consensus 180 ~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~ 222 (263)
..+++|++|+++ .++.. .+......+++|+. |++++|+++
T Consensus 478 ~~~~~L~~L~L~~n~~~~~--~~~~~~~~l~~L~~-L~l~~~~~~ 519 (594)
T 2p1m_B 478 SGCDSLRKLEIRDCPFGDK--ALLANASKLETMRS-LWMSSCSVS 519 (594)
T ss_dssp HHCTTCCEEEEESCSCCHH--HHHHTGGGGGGSSE-EEEESSCCB
T ss_pred hcCCCcCEEECcCCCCcHH--HHHHHHHhCCCCCE-EeeeCCCCC
Confidence 446777777777 44221 11111122345777 777777663
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.01 E-value=2.2e-11 Score=104.40 Aligned_cols=137 Identities=18% Similarity=0.154 Sum_probs=106.0
Q ss_pred CCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--C----C-CCCCCCcEEEecCCCCCCCc----hhhhh
Q psy3787 3 SHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--V----C-TDCKNLTHLLLGFNKINNME----NDYFL 70 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~----~-~~~~~L~~L~l~~n~~~~~~----~~~~~ 70 (263)
++|++|++++|.++...+.. ...+++|+.|++++|.++... . + ...++|++|++++|.++... ..++.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 57999999999987633444 345678999999999997432 1 2 34678999999999987533 33357
Q ss_pred CCCCccEEEeecCcCcc-----ccccccCCCCcCEEEccCCcCCC-----ccccccCCCcccEEEecCCCCCCcchHHH
Q psy3787 71 TLTKLSLLNLKNNKISE-----VSSNVGDLINLAILDLSDNELTD-----VPCELSSLFHLKSLFLGGNPIKTVRNDIL 139 (263)
Q Consensus 71 ~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 139 (263)
..++|++|++++|.++. ++..+...++|++|++++|.++. ++..+...++|+.|++++|.|+......+
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 78999999999999983 35566777899999999999984 34456678899999999999887554433
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.56 E-value=2.2e-07 Score=79.12 Aligned_cols=127 Identities=15% Similarity=0.070 Sum_probs=76.9
Q ss_pred CCCEEEeecCccC-CCC---c----cccCCCCCCcEEEecCCCCC----------CCcC-CCCCCCCcEEEecCCCCCCC
Q psy3787 4 HLKTLDLSHNKLV-SDS---L----PLFIDMRSLTELNLSYNQLT----------MLPV-CTDCKNLTHLLLGFNKINNM 64 (263)
Q Consensus 4 ~L~~L~l~~n~~~-~~~---~----~~~~~l~~L~~L~l~~n~l~----------~l~~-~~~~~~L~~L~l~~n~~~~~ 64 (263)
.++.|.+....+. ... + .+...+++|+.|.+...... .+.. +..+++|+.|.++++.-...
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l 187 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI 187 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee
Confidence 4667777765555 211 1 11445778888888664321 1211 34568899999988732233
Q ss_pred chhhhhCCCCccEEEeecCcCcc-ccccc--cCCCCcCEEEccC--Cc------CCCccccc--cCCCcccEEEecCCCC
Q psy3787 65 ENDYFLTLTKLSLLNLKNNKISE-VSSNV--GDLINLAILDLSD--NE------LTDVPCEL--SSLFHLKSLFLGGNPI 131 (263)
Q Consensus 65 ~~~~~~~l~~L~~L~l~~~~l~~-lp~~~--~~l~~L~~L~l~~--n~------l~~l~~~~--~~l~~L~~L~l~~n~l 131 (263)
++ + .+++|+.|++..|.+.. ....+ ..+++|+.|+++. +. +..+...+ ..+++|+.|++.+|.+
T Consensus 188 ~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 188 GK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE 264 (362)
T ss_dssp CS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred cc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence 32 3 37889999998888762 22223 3678899998753 21 21222223 3578999999998876
Q ss_pred CC
Q psy3787 132 KT 133 (263)
Q Consensus 132 ~~ 133 (263)
..
T Consensus 265 ~~ 266 (362)
T 2ra8_A 265 QN 266 (362)
T ss_dssp HH
T ss_pred ch
Confidence 53
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.49 E-value=5.2e-08 Score=75.01 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=88.0
Q ss_pred cCCCCCCcEEEecCC-CCCCC-----c-CCCCCCCCcEEEecCCCCCCCc----hhhhhCCCCccEEEeecCcCcc----
Q psy3787 23 FIDMRSLTELNLSYN-QLTML-----P-VCTDCKNLTHLLLGFNKINNME----NDYFLTLTKLSLLNLKNNKISE---- 87 (263)
Q Consensus 23 ~~~l~~L~~L~l~~n-~l~~l-----~-~~~~~~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~~~l~~---- 87 (263)
+...+.|+.|++++| .+..- . .+...++|++|++++|.++... ...+...+.|++|++++|.++.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 667899999999999 88731 1 3566789999999999987532 3445566889999999999983
Q ss_pred -ccccccCCCCcCEEEc--cCCcCCC-----ccccccCCCcccEEEecCCCCCC
Q psy3787 88 -VSSNVGDLINLAILDL--SDNELTD-----VPCELSSLFHLKSLFLGGNPIKT 133 (263)
Q Consensus 88 -lp~~~~~l~~L~~L~l--~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~ 133 (263)
+...+...+.|++|++ ++|.++. +...+...++|+.|++++|.+..
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 5667777888999999 8899984 44557778899999999997654
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.40 E-value=4.5e-08 Score=75.36 Aligned_cols=108 Identities=10% Similarity=0.074 Sum_probs=84.9
Q ss_pred CCCCCEEEeecC-ccCCCCccc----cCCCCCCcEEEecCCCCCCC-----c-CCCCCCCCcEEEecCCCCCCCc----h
Q psy3787 2 LSHLKTLDLSHN-KLVSDSLPL----FIDMRSLTELNLSYNQLTML-----P-VCTDCKNLTHLLLGFNKINNME----N 66 (263)
Q Consensus 2 l~~L~~L~l~~n-~~~~~~~~~----~~~l~~L~~L~l~~n~l~~l-----~-~~~~~~~L~~L~l~~n~~~~~~----~ 66 (263)
.++|++|++++| .+....+.. +...++|++|++++|.+..- . .+...++|++|++++|.++... .
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 467999999999 887633333 67789999999999999832 1 2455678999999999998532 4
Q ss_pred hhhhCCCCccEEEe--ecCcCcc-----ccccccCCCCcCEEEccCCcCC
Q psy3787 67 DYFLTLTKLSLLNL--KNNKISE-----VSSNVGDLINLAILDLSDNELT 109 (263)
Q Consensus 67 ~~~~~l~~L~~L~l--~~~~l~~-----lp~~~~~l~~L~~L~l~~n~l~ 109 (263)
.++...+.|++|++ ++|.++. +...+...+.|++|+++.|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 44667789999999 8899983 4556667788999999999875
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.25 E-value=6.1e-07 Score=76.35 Aligned_cols=153 Identities=16% Similarity=0.108 Sum_probs=96.6
Q ss_pred CCCCCEEEeecCccCC--------CCccc-cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhh--
Q psy3787 2 LSHLKTLDLSHNKLVS--------DSLPL-FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFL-- 70 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~--------~~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~-- 70 (263)
+++|+.|.+....... ..++. +..+|+|+.|+++++.-..++.+. .++|+.|++..+.+.......+.
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~ 216 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGS 216 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHc
Confidence 5789999887654321 01333 677899999999988422334443 78999999998887643333343
Q ss_pred CCCCccEEEeecC--c------Cccccccc--cCCCCcCEEEccCCcCCC-cccc---ccCCCcccEEEecCCCCCCcch
Q psy3787 71 TLTKLSLLNLKNN--K------ISEVSSNV--GDLINLAILDLSDNELTD-VPCE---LSSLFHLKSLFLGGNPIKTVRN 136 (263)
Q Consensus 71 ~l~~L~~L~l~~~--~------l~~lp~~~--~~l~~L~~L~l~~n~l~~-l~~~---~~~l~~L~~L~l~~n~l~~~~~ 136 (263)
.+++|+.|+++.+ . +..+...+ ..+++|++|++++|.+.. .+.. ...++.|+.|+++.|.+.....
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~ 296 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence 6889999998632 1 22222222 347889999999988863 2222 2357899999999998777443
Q ss_pred HHHHhH---HHHhhhhhCCCCc
Q psy3787 137 DILQDS---KRIISHIKTSRLD 155 (263)
Q Consensus 137 ~~~~~~---~~~l~~l~~~~~~ 155 (263)
..+... ...|+.|+++.+.
T Consensus 297 ~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 297 RLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHhhcccCCcceEEECCCCc
Confidence 333221 3445556664444
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.14 E-value=4.9e-06 Score=71.52 Aligned_cols=57 Identities=14% Similarity=0.046 Sum_probs=29.2
Q ss_pred ccccCCcceeccc-cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccc
Q psy3787 179 KYKLDRTKTLTLC-KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVY 240 (263)
Q Consensus 179 ~~~~~~L~~L~l~-~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~ 240 (263)
+.++.+|+.+++. .++.+++..|.... +|+. +++..+ ++.|+..++.+..+|..+.+
T Consensus 316 F~~c~~L~~i~lp~~v~~I~~~aF~~c~---~L~~-i~lp~~-l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 316 FESCTSLVSIDLPYLVEEIGKRSFRGCT---SLSN-INFPLS-LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp TTTCTTCCEECCCTTCCEECTTTTTTCT---TCCE-ECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred hcCCCCCCEEEeCCcccEEhHHhccCCC---CCCE-EEECcc-ccEehHHHhhCCCCCCEEEE
Confidence 3445555555555 55555554444322 4665 666544 55555555544444444443
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.11 E-value=1.2e-06 Score=66.42 Aligned_cols=85 Identities=11% Similarity=0.088 Sum_probs=63.3
Q ss_pred CCCCcEEEecCCCCC--CCcCCCCCCCCcEEEecCCC-CCCCchhhhhCC----CCccEEEeecC-cCccc-cccccCCC
Q psy3787 26 MRSLTELNLSYNQLT--MLPVCTDCKNLTHLLLGFNK-INNMENDYFLTL----TKLSLLNLKNN-KISEV-SSNVGDLI 96 (263)
Q Consensus 26 l~~L~~L~l~~n~l~--~l~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~l----~~L~~L~l~~~-~l~~l-p~~~~~l~ 96 (263)
--.|+.||+++|.++ .+..+..+++|++|++++|. ++...-..+..+ ++|++|++++| +++.- -..+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 347999999999987 34567889999999999985 765444445554 36999999998 57732 22356789
Q ss_pred CcCEEEccCCc-CCC
Q psy3787 97 NLAILDLSDNE-LTD 110 (263)
Q Consensus 97 ~L~~L~l~~n~-l~~ 110 (263)
+|++|+++++. ++.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 99999999984 554
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.09 E-value=3.3e-06 Score=68.54 Aligned_cols=79 Identities=29% Similarity=0.244 Sum_probs=57.7
Q ss_pred CCCCCCcEEEecCCCCCCCcCC----CCCCCCcEEEecCCCCCCCch-hhhhCCCCccEEEeecCcCc-cccc-------
Q psy3787 24 IDMRSLTELNLSYNQLTMLPVC----TDCKNLTHLLLGFNKINNMEN-DYFLTLTKLSLLNLKNNKIS-EVSS------- 90 (263)
Q Consensus 24 ~~l~~L~~L~l~~n~l~~l~~~----~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~~~l~-~lp~------- 90 (263)
.++++|+.|+|++|.++.++.+ ..+++|+.|++++|.+.+... ..+..+ +|++|++++|.+. .+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 4688899999999998876643 368899999999999887622 223333 8999999999887 3442
Q ss_pred cccCCCCcCEEEc
Q psy3787 91 NVGDLINLAILDL 103 (263)
Q Consensus 91 ~~~~l~~L~~L~l 103 (263)
.+..+++|+.|+-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 2566788888763
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.08 E-value=2.2e-05 Score=67.45 Aligned_cols=191 Identities=14% Similarity=0.157 Sum_probs=105.7
Q ss_pred CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCC-------------------
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNK------------------- 60 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~------------------- 60 (263)
+++|+.+.+.++- ......+|.++.+|+.+.+..+ +..++ .+..+..|+.+.+..+.
T Consensus 161 c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip 238 (394)
T 4fs7_A 161 CESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIP 238 (394)
T ss_dssp CTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEEC
T ss_pred cCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEEC
Confidence 4678888887653 3312223888899999888765 44333 35555555554443332
Q ss_pred --CCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHH
Q psy3787 61 --INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDI 138 (263)
Q Consensus 61 --~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~ 138 (263)
+..+...++..+..++.+.+..+..+--...+..+..++.+......+. ...+..+.+|+.+.+..+ ++.++...
T Consensus 239 ~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-i~~I~~~a 315 (394)
T 4fs7_A 239 DSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-VKFIGEEA 315 (394)
T ss_dssp TTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT-CCEECTTT
T ss_pred CCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeec--cccccccccccccccccc-cceechhh
Confidence 1222333444455555555544432222223444555555544433221 123566777777777653 55666555
Q ss_pred HHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccc-cccccccCCcceeccc-cccccChhHHhhcCCccceeEEEec
Q psy3787 139 LQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEI-NIDKYKLDRTKTLTLC-KVINIPESVYMRGMSSQECTIEINI 216 (263)
Q Consensus 139 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~-~~~~l~~~~~~~~~~~~~L~~~L~l 216 (263)
+... ..|+.+.+... ...+ ...+.++.+|+.+.+. .++.+++..|.... +|+. +++
T Consensus 316 F~~c-~~L~~i~lp~~-----------------v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~---~L~~-i~l 373 (394)
T 4fs7_A 316 FESC-TSLVSIDLPYL-----------------VEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCI---NLKK-VEL 373 (394)
T ss_dssp TTTC-TTCCEECCCTT-----------------CCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCT---TCCE-EEE
T ss_pred hcCC-CCCCEEEeCCc-----------------ccEEhHHhccCCCCCCEEEECccccEehHHHhhCCC---CCCE-EEE
Confidence 4432 12333333110 1112 2247788999999999 88888887776544 7998 998
Q ss_pred cCC
Q psy3787 217 DKY 219 (263)
Q Consensus 217 s~n 219 (263)
..+
T Consensus 374 p~~ 376 (394)
T 4fs7_A 374 PKR 376 (394)
T ss_dssp EGG
T ss_pred CCC
Confidence 755
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.05 E-value=3.6e-05 Score=66.02 Aligned_cols=61 Identities=8% Similarity=0.066 Sum_probs=44.3
Q ss_pred ccccCCcceeccc-cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCCc
Q psy3787 179 KYKLDRTKTLTLC-KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRP 244 (263)
Q Consensus 179 ~~~~~~L~~L~l~-~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~ 244 (263)
+.++.+|+.+++. .++.+++..|.... +|+. +.+..+ ++.|...++.+..+|..+.+.++.
T Consensus 307 F~~c~~L~~i~lp~~v~~I~~~aF~~C~---~L~~-i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 307 FAGCISLKSIDIPEGITQILDDAFAGCE---QLER-IAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTCTTCCEEECCTTCCEECTTTTTTCT---TCCE-EEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred ecCCCCcCEEEeCCcccEehHhHhhCCC---CCCE-EEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 5677888888888 78888777666533 6887 888654 778887777777777777776654
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.05 E-value=2.1e-05 Score=67.49 Aligned_cols=57 Identities=11% Similarity=0.181 Sum_probs=39.6
Q ss_pred ccccCCcceeccc-cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccc
Q psy3787 179 KYKLDRTKTLTLC-KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVY 240 (263)
Q Consensus 179 ~~~~~~L~~L~l~-~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~ 240 (263)
+..++.|+.+.+. .++.+++..|.... +|+. +++..+ ++.|...++.+..+|..+.+
T Consensus 284 F~~c~~L~~i~l~~~i~~I~~~aF~~c~---~L~~-i~lp~~-v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 284 FMNCPALQDIEFSSRITELPESVFAGCI---SLKS-IDIPEG-ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp TTTCTTCCEEECCTTCCEECTTTTTTCT---TCCE-EECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred cccccccccccCCCcccccCceeecCCC---CcCE-EEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence 4567788888888 88888887776543 6888 888754 77777766655455544433
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.86 E-value=1.7e-05 Score=64.36 Aligned_cols=100 Identities=20% Similarity=0.254 Sum_probs=72.3
Q ss_pred CCCCCcE--EEecCCCCCCCcC-----CCCCCCCcEEEecCCCCCCCch--hhhhCCCCccEEEeecCcCccccc--ccc
Q psy3787 25 DMRSLTE--LNLSYNQLTMLPV-----CTDCKNLTHLLLGFNKINNMEN--DYFLTLTKLSLLNLKNNKISEVSS--NVG 93 (263)
Q Consensus 25 ~l~~L~~--L~l~~n~l~~l~~-----~~~~~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~--~~~ 93 (263)
..+.|.. ++++.|....++. ...+++|+.|++++|.+.++.+ ..+..+++|+.|++++|+++.+.. .+.
T Consensus 139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~ 218 (267)
T 3rw6_A 139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK 218 (267)
T ss_dssp GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc
Confidence 3344444 5666775443331 2457899999999999998653 556789999999999999997632 234
Q ss_pred CCCCcCEEEccCCcCCC-cc-------ccccCCCcccEEE
Q psy3787 94 DLINLAILDLSDNELTD-VP-------CELSSLFHLKSLF 125 (263)
Q Consensus 94 ~l~~L~~L~l~~n~l~~-l~-------~~~~~l~~L~~L~ 125 (263)
.+ +|++|++++|.+.. +| ..+..+++|+.|+
T Consensus 219 ~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 219 GL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 44 89999999999873 43 2367888898875
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.78 E-value=2.2e-05 Score=59.39 Aligned_cols=87 Identities=20% Similarity=0.200 Sum_probs=65.4
Q ss_pred CCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCc-Cccc-cccccCC----CCcCEEEccCC-cCCCc-cccccCC
Q psy3787 47 DCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK-ISEV-SSNVGDL----INLAILDLSDN-ELTDV-PCELSSL 118 (263)
Q Consensus 47 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l-p~~~~~l----~~L~~L~l~~n-~l~~l-~~~~~~l 118 (263)
.-..|++||++++.++...-..+..+++|++|++++|. ++.- -..+..+ ++|++|++++| .++.- -..+..+
T Consensus 59 ~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 34579999999999887666668899999999999994 6622 2223433 47999999998 47742 1246789
Q ss_pred CcccEEEecCCC-CCC
Q psy3787 119 FHLKSLFLGGNP-IKT 133 (263)
Q Consensus 119 ~~L~~L~l~~n~-l~~ 133 (263)
++|++|++++++ ++.
T Consensus 139 ~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCCEEEEESCTTCCC
T ss_pred CCCCEEECCCCCCCCc
Confidence 999999999985 443
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.69 E-value=0.00018 Score=61.19 Aligned_cols=81 Identities=17% Similarity=0.179 Sum_probs=34.5
Q ss_pred CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccc-cccCCCCcCEEEccCCcCCCccc-cccCCCccc
Q psy3787 45 CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSS-NVGDLINLAILDLSDNELTDVPC-ELSSLFHLK 122 (263)
Q Consensus 45 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~ 122 (263)
+..+..|+.+.+..+ ++.+...+|..+.+++.+.+.. +++.++. .+..+.+|+.+.+.++.++.++. +|..+.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 344444444444433 3333444444444444444432 2333322 23444444444444444444422 244444444
Q ss_pred EEEec
Q psy3787 123 SLFLG 127 (263)
Q Consensus 123 ~L~l~ 127 (263)
.+.+.
T Consensus 314 ~i~lp 318 (379)
T 4h09_A 314 SVTLP 318 (379)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 44443
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.51 E-value=0.0015 Score=55.52 Aligned_cols=159 Identities=14% Similarity=0.192 Sum_probs=107.0
Q ss_pred cCCCCCCcEEEecCCCCC-CCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccc-cccCCCCcCE
Q psy3787 23 FIDMRSLTELNLSYNQLT-MLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSS-NVGDLINLAI 100 (263)
Q Consensus 23 ~~~l~~L~~L~l~~n~l~-~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~ 100 (263)
+.....+..+.+...... .-..+..+..++.+.+..+ +..+...++..+..|+.+.+..+ ++.+.. .+..+.+|+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~ 267 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT 267 (379)
T ss_dssp CCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred ccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence 445556666655544322 1224666778888877654 56666777888999999999765 666654 4678889999
Q ss_pred EEccCCcCCCccc-cccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccc
Q psy3787 101 LDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDK 179 (263)
Q Consensus 101 L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (263)
+.+..+ +..++. .|..+.+|+.+.+.++.++.++... +
T Consensus 268 i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~a----------------------------------------F 306 (379)
T 4h09_A 268 LNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRV----------------------------------------F 306 (379)
T ss_dssp EEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTT----------------------------------------T
T ss_pred cccccc-ceeccccccccccccccccccccccceehhhh----------------------------------------h
Confidence 998654 666654 5889999999999887777665432 4
Q ss_pred cccCCcceeccc-cccccChhHHhhcCCccceeEEEeccCCcccccCcccc
Q psy3787 180 YKLDRTKTLTLC-KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTL 229 (263)
Q Consensus 180 ~~~~~L~~L~l~-~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~ 229 (263)
.++.+|+.+.+. .++.+++..|.... +|+. +.+..+ ++.|...++
T Consensus 307 ~~c~~L~~i~lp~~l~~I~~~aF~~C~---~L~~-i~ip~~-v~~I~~~aF 352 (379)
T 4h09_A 307 MDCVKLSSVTLPTALKTIQVYAFKNCK---ALST-ISYPKS-ITLIESGAF 352 (379)
T ss_dssp TTCTTCCEEECCTTCCEECTTTTTTCT---TCCC-CCCCTT-CCEECTTTT
T ss_pred cCCCCCCEEEcCccccEEHHHHhhCCC---CCCE-EEECCc-cCEEchhHh
Confidence 555667777776 67777666555433 5776 777544 666655544
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.25 E-value=0.00029 Score=54.30 Aligned_cols=108 Identities=13% Similarity=0.110 Sum_probs=74.8
Q ss_pred cCCCCCCcEEEecCC-CCCCC------cCCCCCCCCcEEEecCCCCCCC----chhhhhCCCCccEEEeecCcCc-----
Q psy3787 23 FIDMRSLTELNLSYN-QLTML------PVCTDCKNLTHLLLGFNKINNM----ENDYFLTLTKLSLLNLKNNKIS----- 86 (263)
Q Consensus 23 ~~~l~~L~~L~l~~n-~l~~l------~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~l~----- 86 (263)
+.+-+.|+.|+++++ .|..- ..+..-.+|+.|++++|.++.. ...++.....|++|++++|.|+
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 455678888888885 66621 1345567888889988888743 3344556678889999988887
Q ss_pred cccccccCCCCcCEEEccCC---cCCC-----ccccccCCCcccEEEecCCC
Q psy3787 87 EVSSNVGDLINLAILDLSDN---ELTD-----VPCELSSLFHLKSLFLGGNP 130 (263)
Q Consensus 87 ~lp~~~~~l~~L~~L~l~~n---~l~~-----l~~~~~~l~~L~~L~l~~n~ 130 (263)
.+.+.+..-+.|++|+++++ .+.. +...+..-+.|..++++.|.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 34556666677889988765 3442 34456677788888887664
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.24 E-value=0.0004 Score=53.47 Aligned_cols=65 Identities=15% Similarity=0.179 Sum_probs=40.0
Q ss_pred hCCCCccEEEeecC-cCc-----cccccccCCCCcCEEEccCCcCCC-----ccccccCCCcccEEEecCCCCCCc
Q psy3787 70 LTLTKLSLLNLKNN-KIS-----EVSSNVGDLINLAILDLSDNELTD-----VPCELSSLFHLKSLFLGGNPIKTV 134 (263)
Q Consensus 70 ~~l~~L~~L~l~~~-~l~-----~lp~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~ 134 (263)
...+.|++|+++++ .+. .+.+.+..-..|+.|++++|.+.. +...+...+.|+.|+++.|.|..-
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 34456666666664 554 234455556667777777777762 344455666777777777766643
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.87 E-value=0.0026 Score=45.54 Aligned_cols=56 Identities=23% Similarity=0.198 Sum_probs=39.5
Q ss_pred cEEEecCCCCC--CCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCc
Q psy3787 30 TELNLSYNQLT--MLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKIS 86 (263)
Q Consensus 30 ~~L~l~~n~l~--~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~ 86 (263)
..++.+++.++ .+|.- -..++++|++++|.++.+++..|..+++|+.|++++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36677777776 66631 1235777888888888777777777777888888777665
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.80 E-value=0.0022 Score=45.89 Aligned_cols=55 Identities=25% Similarity=0.444 Sum_probs=41.1
Q ss_pred cEEEeecCcCc--cccccccCCCCcCEEEccCCcCCCcccc-ccCCCcccEEEecCCCCC
Q psy3787 76 SLLNLKNNKIS--EVSSNVGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIK 132 (263)
Q Consensus 76 ~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~l~ 132 (263)
..++.++++++ .+|..+. .++++|++++|.|+.++.. |..+++|+.|++.+|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 35677777777 7776543 4578888888888888654 677888888888888765
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=52.91 E-value=18 Score=23.83 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=21.2
Q ss_pred CCCCchhhhhCCCCccEEEeecCcCcccc-ccccCCCCcCEEEccC
Q psy3787 61 INNMENDYFLTLTKLSLLNLKNNKISEVS-SNVGDLINLAILDLSD 105 (263)
Q Consensus 61 ~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~ 105 (263)
++.+...+|.++..|+.+.+..+ ++.+. ..+..+.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 44444555555555555555432 33332 2345555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.96 E-value=63 Score=21.14 Aligned_cols=36 Identities=22% Similarity=0.409 Sum_probs=20.5
Q ss_pred cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCC
Q psy3787 23 FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59 (263)
Q Consensus 23 ~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n 59 (263)
|.++..|+.+.+..+ ++.+. .|..+.+|+.+.+...
T Consensus 16 F~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred hcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 666666666666654 33332 3556666666665544
Done!