Query psy3787
Match_columns 263
No_of_seqs 165 out of 1767
Neff 9.9
Searched_HMMs 13730
Date Fri Aug 16 17:23:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3787.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3787hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1p9ag_ c.10.2.7 (G:) von Will 99.9 4.5E-21 3.3E-25 155.5 14.2 191 3-220 10-206 (266)
2 d1ogqa_ c.10.2.8 (A:) Polygala 99.8 2.7E-21 1.9E-25 160.4 12.3 236 4-249 51-307 (313)
3 d1p9ag_ c.10.2.7 (G:) von Will 99.8 9E-21 6.5E-25 153.8 14.1 201 23-248 6-210 (266)
4 d1ozna_ c.10.2.7 (A:) Reticulo 99.8 1.4E-19 1E-23 147.9 14.4 196 4-221 33-237 (284)
5 d1ozna_ c.10.2.7 (A:) Reticulo 99.8 1.6E-19 1.2E-23 147.5 14.7 219 7-249 15-241 (284)
6 d1xkua_ c.10.2.7 (A:) Decorin 99.8 1.4E-18 1E-22 143.2 17.5 216 3-246 31-285 (305)
7 d2omza2 c.10.2.1 (A:33-416) In 99.8 7.3E-18 5.3E-22 142.6 17.6 131 2-136 65-258 (384)
8 d1ogqa_ c.10.2.8 (A:) Polygala 99.7 8.6E-19 6.3E-23 145.1 7.2 201 1-225 74-308 (313)
9 d1xkua_ c.10.2.7 (A:) Decorin 99.7 2.8E-17 2E-21 135.3 16.2 229 5-244 12-253 (305)
10 d1h6ta2 c.10.2.1 (A:31-240) In 99.7 2.1E-17 1.6E-21 128.9 13.4 107 24-134 43-149 (210)
11 d2omxa2 c.10.2.1 (A:37-235) In 99.7 8.9E-17 6.5E-21 124.3 14.1 155 20-226 33-189 (199)
12 d2omxa2 c.10.2.1 (A:37-235) In 99.7 1.2E-16 8.5E-21 123.6 14.1 128 2-135 39-166 (199)
13 d1xwdc1 c.10.2.7 (C:18-259) Fo 99.7 9E-17 6.6E-21 127.8 13.7 211 6-240 11-232 (242)
14 d1h6ua2 c.10.2.1 (A:36-262) In 99.7 2.7E-16 2E-20 123.9 15.7 196 10-239 26-223 (227)
15 d1h6ta2 c.10.2.1 (A:31-240) In 99.7 2.1E-16 1.6E-20 123.1 14.7 164 2-191 45-208 (210)
16 d2omza2 c.10.2.1 (A:33-416) In 99.7 4E-16 2.9E-20 131.8 15.8 192 20-243 190-383 (384)
17 d1a9na_ c.10.2.4 (A:) Spliceso 99.7 9.7E-17 7.1E-21 119.9 7.6 112 22-135 13-128 (162)
18 d1w8aa_ c.10.2.7 (A:) Slit {Fr 99.6 2.2E-15 1.6E-19 115.6 15.2 127 5-135 10-142 (192)
19 d1h6ua2 c.10.2.1 (A:36-262) In 99.6 4.4E-15 3.2E-19 116.9 15.3 185 2-218 40-226 (227)
20 d1xwdc1 c.10.2.7 (C:18-259) Fo 99.6 1.4E-15 1.1E-19 120.7 11.1 199 3-226 29-240 (242)
21 d1dcea3 c.10.2.2 (A:444-567) R 99.6 3.5E-15 2.6E-19 106.2 10.2 102 31-134 2-105 (124)
22 d1dcea3 c.10.2.2 (A:444-567) R 99.6 3.6E-15 2.6E-19 106.2 9.3 115 6-124 1-122 (124)
23 d1w8aa_ c.10.2.7 (A:) Slit {Fr 99.6 2.7E-15 2E-19 115.1 7.1 108 3-110 29-140 (192)
24 d1a9na_ c.10.2.4 (A:) Spliceso 99.5 2.7E-15 1.9E-19 111.9 6.3 122 2-125 17-145 (162)
25 d1jl5a_ c.10.2.6 (A:) Leucine 99.5 5.8E-13 4.2E-17 110.4 15.4 95 4-109 39-133 (353)
26 d2ifga3 c.10.2.7 (A:36-191) Hi 99.3 6.4E-12 4.7E-16 92.6 11.5 109 24-132 5-116 (156)
27 d1m9la_ c.10.3.1 (A:) Outer ar 99.3 1.2E-14 8.9E-19 111.9 -5.1 128 5-134 25-155 (198)
28 d2ifga3 c.10.2.7 (A:36-191) Hi 99.3 9.5E-12 6.9E-16 91.7 10.2 104 4-109 9-116 (156)
29 d1m9la_ c.10.3.1 (A:) Outer ar 99.3 4.3E-14 3.2E-18 108.8 -3.8 124 29-156 25-152 (198)
30 d1jl5a_ c.10.2.6 (A:) Leucine 99.2 1.7E-10 1.3E-14 95.1 15.5 100 27-136 38-137 (353)
31 d2astb2 c.10.1.3 (B:2136-2419) 99.1 4.2E-11 3E-15 96.9 6.7 180 25-219 44-235 (284)
32 d2astb2 c.10.1.3 (B:2136-2419) 99.0 4.9E-11 3.6E-15 96.5 4.4 199 6-222 3-214 (284)
33 d2ca6a1 c.10.1.2 (A:2-345) Rna 99.0 1.4E-10 1E-14 96.2 5.6 210 2-223 58-316 (344)
34 d2ca6a1 c.10.1.2 (A:2-345) Rna 99.0 7E-11 5.1E-15 98.0 3.2 232 2-245 30-314 (344)
35 d1z7xw1 c.10.1.1 (W:1-460) Rib 98.3 3.6E-08 2.6E-12 83.6 -0.8 106 4-109 3-125 (460)
36 d1z7xw1 c.10.1.1 (W:1-460) Rib 98.2 1.5E-07 1.1E-11 79.6 2.0 108 27-134 2-127 (460)
37 d1koha1 c.10.2.3 (A:201-362) m 97.9 7.3E-07 5.3E-11 65.2 0.6 80 23-102 61-152 (162)
38 d1koha1 c.10.2.3 (A:201-362) m 97.9 2.2E-06 1.6E-10 62.5 2.1 80 46-125 62-152 (162)
39 d1pgva_ c.10.1.1 (A:) Tropomod 97.8 1E-05 7.6E-10 59.1 5.5 106 24-129 12-141 (167)
40 d1pgva_ c.10.1.1 (A:) Tropomod 97.6 6E-05 4.4E-09 54.9 6.5 92 47-138 13-119 (167)
41 d1io0a_ c.10.1.1 (A:) Tropomod 97.1 0.00012 8.9E-09 53.0 2.8 108 23-130 13-143 (166)
42 d1io0a_ c.10.1.1 (A:) Tropomod 97.0 0.00024 1.7E-08 51.4 4.0 41 92-132 42-87 (166)
No 1
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.85 E-value=4.5e-21 Score=155.54 Aligned_cols=191 Identities=24% Similarity=0.271 Sum_probs=140.1
Q ss_pred CCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787 3 SHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN 79 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 79 (263)
..+.+.+.++++++. +|+ +. +++++|++++|.++.++ .|..+++|++|++++|.++.++. +..+++|++|+
T Consensus 10 ~~~~~v~C~~~~L~~--iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~~l~~L~~L~ 83 (266)
T d1p9ag_ 10 ASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLD 83 (266)
T ss_dssp TTCCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEE
T ss_pred CCCeEEEccCCCCCe--eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc--ccccccccccc
Confidence 455667888888876 664 42 57888888888888766 47788888888888888887654 45688888888
Q ss_pred eecCcCccccccccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccc
Q psy3787 80 LKNNKISEVSSNVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHC 158 (263)
Q Consensus 80 l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~ 158 (263)
+++|+++..+..+..+++|+.++++++.+..++. .+..+.+++.+++++|.++.++...+... ..+..++++.+.+
T Consensus 84 Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l-~~l~~l~l~~N~l-- 160 (266)
T d1p9ag_ 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT-PKLEKLSLANNNL-- 160 (266)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSCC--
T ss_pred cccccccccccccccccccccccccccccceeeccccccccccccccccccccceecccccccc-ccchhcccccccc--
Confidence 8888888877777888888888888888877643 46778888888888888888876654432 3455566655552
Q ss_pred cccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCc
Q psy3787 159 QNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYK 220 (263)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~ 220 (263)
....+..+..+++|++|+++ +++.+|++++.... |+. |++++|+
T Consensus 161 -------------~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~----L~~-L~L~~Np 206 (266)
T d1p9ag_ 161 -------------TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL----LPF-AFLHGNP 206 (266)
T ss_dssp -------------SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCC----CSE-EECCSCC
T ss_pred -------------cccCccccccccccceeecccCCCcccChhHCCCCC----CCE-EEecCCC
Confidence 22223346677888888888 77888877776554 888 8888884
No 2
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Probab=99.85 E-value=2.7e-21 Score=160.40 Aligned_cols=236 Identities=17% Similarity=0.186 Sum_probs=177.3
Q ss_pred CCCEEEeecCccCCC-Cccc-cCCCCCCcEEEecC-CCCC-CCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEE
Q psy3787 4 HLKTLDLSHNKLVSD-SLPL-FIDMRSLTELNLSY-NQLT-MLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLL 78 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~-~~~~-~~~l~~L~~L~l~~-n~l~-~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 78 (263)
+++.|+++++.+.+. .+|+ +.++++|++|++++ |.+. .+| .+..+++|++|++++|.+.+..+..+..+.+|+.+
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l 130 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence 588899999998863 2455 99999999999997 7776 576 58999999999999999998888888999999999
Q ss_pred EeecCcCc-cccccccCCCCcCEEEccCCcCC-CccccccCCCcc-cEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCc
Q psy3787 79 NLKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVPCELSSLFHL-KSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLD 155 (263)
Q Consensus 79 ~l~~~~l~-~lp~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~ 155 (263)
++++|.+. .+|..+..++.++++++++|.+. .+|..+..+..+ +.+++++|.+++..+..+... ....++.....
T Consensus 131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l--~~~~l~l~~~~ 208 (313)
T d1ogqa_ 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNM 208 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC--CCSEEECCSSE
T ss_pred ccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc--ccccccccccc
Confidence 99999877 67889999999999999999988 578888887776 889999999887544333221 11123222222
Q ss_pred cccc---------ccCCCCCCCcCCcccccccccccCCcceeccc--ccc-ccChhHHhhcCCccceeEEEeccCCccc-
Q psy3787 156 YHCQ---------NVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVI-NIPESVYMRGMSSQECTIEINIDKYKLD- 222 (263)
Q Consensus 156 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~-~l~~~~~~~~~~~~~L~~~L~ls~n~l~- 222 (263)
..-. .......... .....++.+..+++|+.|+++ +++ .+|+++..+. +|+. |++++|+|+
T Consensus 209 ~~~~~~~~~~~~~~l~~l~~~~~-~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~----~L~~-L~Ls~N~l~g 282 (313)
T d1ogqa_ 209 LEGDASVLFGSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK----FLHS-LNVSFNNLCG 282 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSS-EECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCT----TCCE-EECCSSEEEE
T ss_pred ccccccccccccccccccccccc-cccccccccccccccccccCccCeecccCChHHhCCC----CCCE-EECcCCcccc
Confidence 1000 0000000000 023345568888999999999 776 8999887665 4999 999999999
Q ss_pred ccCccccccccccccccccCCceEEec
Q psy3787 223 RTKTLTLCKVINIPESVYMNRPFALTY 249 (263)
Q Consensus 223 ~ip~~~~~~~~~l~~~~~~~~~~~~~~ 249 (263)
.+|.. ..+.++..+.+.||+.++..
T Consensus 283 ~iP~~--~~L~~L~~l~l~~N~~l~g~ 307 (313)
T d1ogqa_ 283 EIPQG--GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp ECCCS--TTGGGSCGGGTCSSSEEEST
T ss_pred cCCCc--ccCCCCCHHHhCCCccccCC
Confidence 78864 34678889999999977653
No 3
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.84 E-value=9e-21 Score=153.76 Aligned_cols=201 Identities=19% Similarity=0.186 Sum_probs=164.5
Q ss_pred cCCCCCCcEEEecCCCCCCCcC-CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEE
Q psy3787 23 FIDMRSLTELNLSYNQLTMLPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAIL 101 (263)
Q Consensus 23 ~~~l~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L 101 (263)
......+..++.+++.++.+|. +. +.+++|++++|.++++++.+|..+++|++|++++|+++.++. ++.+++|++|
T Consensus 6 ~~~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L 82 (266)
T d1p9ag_ 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTL 82 (266)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEE
T ss_pred EcccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-cccccccccc
Confidence 3456677788999999999884 42 579999999999999998889999999999999999998875 4678999999
Q ss_pred EccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCccccc-cccc
Q psy3787 102 DLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEIN-IDKY 180 (263)
Q Consensus 102 ~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 180 (263)
++++|.++.++..+..+++|+.+++++|.+.+++...+... ..+..+....+. ...++ ..+.
T Consensus 83 ~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~l~~L~l~~n~----------------l~~l~~~~~~ 145 (266)
T d1p9ag_ 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNE----------------LKTLPPGLLT 145 (266)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC-TTCCEEECTTSC----------------CCCCCTTTTT
T ss_pred ccccccccccccccccccccccccccccccceeeccccccc-cccccccccccc----------------cceecccccc
Confidence 99999999888889999999999999999998776654432 345556665555 23333 3356
Q ss_pred ccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCCceEEe
Q psy3787 181 KLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFALT 248 (263)
Q Consensus 181 ~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~~ 248 (263)
.++.++.++++ +++.++.+.+.... +|+. |++++|+|+.+|...+ +...+..+.+.|||+.+.
T Consensus 146 ~l~~l~~l~l~~N~l~~~~~~~~~~l~---~L~~-L~Ls~N~L~~lp~~~~-~~~~L~~L~L~~Np~~Cd 210 (266)
T d1p9ag_ 146 PTPKLEKLSLANNNLTELPAGLLNGLE---NLDT-LLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWLCN 210 (266)
T ss_dssp TCTTCCEEECTTSCCSCCCTTTTTTCT---TCCE-EECCSSCCCCCCTTTT-TTCCCSEEECCSCCBCCS
T ss_pred ccccchhcccccccccccCcccccccc---ccce-eecccCCCcccChhHC-CCCCCCEEEecCCCCCCC
Confidence 78999999999 88988877665433 7999 9999999999998655 467788899999998774
No 4
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.81 E-value=1.4e-19 Score=147.94 Aligned_cols=196 Identities=22% Similarity=0.255 Sum_probs=100.6
Q ss_pred CCCEEEeecCccCCCCccc--cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEec-CCCCCCCchhhhhCCCCccEE
Q psy3787 4 HLKTLDLSHNKLVSDSLPL--FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLG-FNKINNMENDYFLTLTKLSLL 78 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~-~n~~~~~~~~~~~~l~~L~~L 78 (263)
++++|++++|+++. +++ |.++++|++|++++|.+..++ .+.....++.+... .+.+..+++..|+++++|+++
T Consensus 33 ~~~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L 110 (284)
T d1ozna_ 33 ASQRIFLHGNRISH--VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (284)
T ss_dssp TCSEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEECcCCcCCC--CCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEE
Confidence 34556666666555 332 555666666666666555443 23444555555432 334555555555556666666
Q ss_pred EeecCcCccccc-cccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcc
Q psy3787 79 NLKNNKISEVSS-NVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDY 156 (263)
Q Consensus 79 ~l~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~ 156 (263)
++++|.+..++. .+....+|+.+++++|.++.+|. .+..++.|+.|++++|.++.+++..+... ..+..+.+..+.+
T Consensus 111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l-~~L~~l~l~~N~l 189 (284)
T d1ozna_ 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL-HSLDRLLLHQNRV 189 (284)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCC
T ss_pred ecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccc-cccchhhhhhccc
Confidence 666665554432 34445556666666666655532 35555566666666666655554433322 3344444433332
Q ss_pred cccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcc
Q psy3787 157 HCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKL 221 (263)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l 221 (263)
....|..+..+++|++|+++ .+..++...+.... +|+. |++++|++
T Consensus 190 ---------------~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~---~L~~-L~l~~N~l 237 (284)
T d1ozna_ 190 ---------------AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR---ALQY-LRLNDNPW 237 (284)
T ss_dssp ---------------CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT---TCCE-EECCSSCE
T ss_pred ---------------cccChhHhhhhhhccccccccccccccccccccccc---ccCE-EEecCCCC
Confidence 22223445555556666665 55555544443222 4555 66666543
No 5
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.81 E-value=1.6e-19 Score=147.52 Aligned_cols=219 Identities=19% Similarity=0.232 Sum_probs=176.3
Q ss_pred EEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec-
Q psy3787 7 TLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN- 82 (263)
Q Consensus 7 ~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~- 82 (263)
.++.++.+++. +|. +. +.+++|++++|.|+.+| .|..++.|++|++++|.+..+++..+.....+..+....
T Consensus 15 ~v~c~~~~L~~--iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~ 90 (284)
T d1ozna_ 15 TTSCPQQGLQA--VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (284)
T ss_dssp EEECCSSCCSS--CCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCCCc--cCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence 45677777776 665 32 57899999999999887 489999999999999999999888888889999988764
Q ss_pred CcCccc-cccccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccc
Q psy3787 83 NKISEV-SSNVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQN 160 (263)
Q Consensus 83 ~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 160 (263)
+.++.+ +..+..+++|+++++++|.+..++. .+....+|+.+++++|.+++++...+... ..++.+++..+.+
T Consensus 91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~-~~L~~L~l~~N~l---- 165 (284)
T d1ozna_ 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL-GNLTHLFLHGNRI---- 165 (284)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCC----
T ss_pred cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccc-cchhhcccccCcc----
Confidence 577777 5568899999999999999987644 57888999999999999999987766543 3567777777663
Q ss_pred cCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccc
Q psy3787 161 VDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPES 238 (263)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~ 238 (263)
....+..+.++++|++++++ +++.+++..+.... +|+. |++++|+++.+|...+....++..+
T Consensus 166 -----------~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~---~L~~-L~l~~N~i~~~~~~~~~~~~~L~~L 230 (284)
T d1ozna_ 166 -----------SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG---RLMT-LYLFANNLSALPTEALAPLRALQYL 230 (284)
T ss_dssp -----------CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT---TCCE-EECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred -----------cccchhhhccccccchhhhhhccccccChhHhhhhh---hccc-ccccccccccccccccccccccCEE
Confidence 22234457889999999999 77777555444433 6999 9999999999998877778889999
Q ss_pred cccCCceEEec
Q psy3787 239 VYMNRPFALTY 249 (263)
Q Consensus 239 ~~~~~~~~~~~ 249 (263)
.+.+||+.+..
T Consensus 231 ~l~~N~l~C~C 241 (284)
T d1ozna_ 231 RLNDNPWVCDC 241 (284)
T ss_dssp ECCSSCEECSG
T ss_pred EecCCCCCCCc
Confidence 99999987654
No 6
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.80 E-value=1.4e-18 Score=143.19 Aligned_cols=216 Identities=19% Similarity=0.295 Sum_probs=143.7
Q ss_pred CCCCEEEeecCccCCCCccc--cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEE
Q psy3787 3 SHLKTLDLSHNKLVSDSLPL--FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLL 78 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 78 (263)
+++++|++++|+++. +++ |.++++|++|++++|.+..++ .|..++.|++|++++|+++.++... ...+..+
T Consensus 31 ~~l~~L~Ls~N~i~~--l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~---~~~l~~L 105 (305)
T d1xkua_ 31 PDTALLDLQNNKITE--IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM---PKTLQEL 105 (305)
T ss_dssp TTCCEEECCSSCCCC--BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC---CTTCCEE
T ss_pred CCCCEEECcCCcCCC--cChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccch---hhhhhhh
Confidence 568999999999988 554 899999999999999999775 4888999999999999888776532 3456666
Q ss_pred EeecCcCcccccc---------------------------ccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCC
Q psy3787 79 NLKNNKISEVSSN---------------------------VGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPI 131 (263)
Q Consensus 79 ~l~~~~l~~lp~~---------------------------~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l 131 (263)
...+|.+..++.. +..+++|+.+++++|.+..+|..+ .++++.+++++|..
T Consensus 106 ~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~ 183 (305)
T d1xkua_ 106 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKI 183 (305)
T ss_dssp ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCC
T ss_pred hccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCccc--CCccCEEECCCCcC
Confidence 6666666544322 233344555555555554444321 34455555555554
Q ss_pred CCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccc
Q psy3787 132 KTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQE 209 (263)
Q Consensus 132 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~ 209 (263)
...+...+... ..++.++.+.+.+ ....+..+.++++|++|+++ +++.+|.++..+. +
T Consensus 184 ~~~~~~~~~~~-~~l~~L~~s~n~l---------------~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~----~ 243 (305)
T d1xkua_ 184 TKVDAASLKGL-NNLAKLGLSFNSI---------------SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK----Y 243 (305)
T ss_dssp CEECTGGGTTC-TTCCEEECCSSCC---------------CEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCS----S
T ss_pred CCCChhHhhcc-ccccccccccccc---------------cccccccccccccceeeeccccccccccccccccc----C
Confidence 44333222211 1223333333331 22334557889999999999 8899998766554 5
Q ss_pred eeEEEeccCCcccccCccccc------cccccccccccCCceE
Q psy3787 210 CTIEINIDKYKLDRTKTLTLC------KVINIPESVYMNRPFA 246 (263)
Q Consensus 210 L~~~L~ls~n~l~~ip~~~~~------~~~~l~~~~~~~~~~~ 246 (263)
|+. |++++|+|+.|+...++ ....+..+.+.|||..
T Consensus 244 L~~-L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 244 IQV-VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp CCE-EECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CCE-EECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence 999 99999999998875543 3455667788899854
No 7
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}
Probab=99.77 E-value=7.3e-18 Score=142.62 Aligned_cols=131 Identities=31% Similarity=0.445 Sum_probs=73.3
Q ss_pred CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCch---------------
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMEN--------------- 66 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~--------------- 66 (263)
+++|++|++++|+++. +++++++++|++|++++|.+..++.+..+++|+.++++++.+.....
T Consensus 65 L~nL~~L~Ls~N~l~~--l~~l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (384)
T d2omza2 65 LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 142 (384)
T ss_dssp CTTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEE
T ss_pred CCCCCEEeCcCCcCCC--CccccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4556666666666655 45566666666666666666655555555566665555544321100
Q ss_pred ------------------------------------------------hhhhCCCCccEEEeecCcCccccccccCCCCc
Q psy3787 67 ------------------------------------------------DYFLTLTKLSLLNLKNNKISEVSSNVGDLINL 98 (263)
Q Consensus 67 ------------------------------------------------~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L 98 (263)
..+..++++..+++++|.++.++. +....+|
T Consensus 143 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L 221 (384)
T d2omza2 143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNL 221 (384)
T ss_dssp EECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTC
T ss_pred cccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc-ccccCCC
Confidence 112223344444444444443332 2334567
Q ss_pred CEEEccCCcCCCccccccCCCcccEEEecCCCCCCcch
Q psy3787 99 AILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRN 136 (263)
Q Consensus 99 ~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~ 136 (263)
+.+++++|.++.++ .+..+++|+.+++++|.++++++
T Consensus 222 ~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~ 258 (384)
T d2omza2 222 DELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP 258 (384)
T ss_dssp CEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG
T ss_pred CEEECCCCCCCCcc-hhhcccccchhccccCccCCCCc
Confidence 77777777777665 46667777777777777776553
No 8
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Probab=99.74 E-value=8.6e-19 Score=145.07 Aligned_cols=201 Identities=17% Similarity=0.199 Sum_probs=151.6
Q ss_pred CCCCCCEEEeec-CccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCcc
Q psy3787 1 MLSHLKTLDLSH-NKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLS 76 (263)
Q Consensus 1 ~l~~L~~L~l~~-n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 76 (263)
++++|++|++++ |.+.+ .+|+ +.++++|++|++++|.+..++ .+..+..|+.+++++|.+....+..+..+++++
T Consensus 74 ~L~~L~~L~Ls~~N~l~g-~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~ 152 (313)
T d1ogqa_ 74 NLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152 (313)
T ss_dssp GCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred cCcccccccccccccccc-ccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccc
Confidence 478999999997 78875 3666 999999999999999998654 377788999999999988877777789999999
Q ss_pred EEEeecCcCc-cccccccCCCCc-CEEEccCCcCCC------------------------ccccccCCCcccEEEecCCC
Q psy3787 77 LLNLKNNKIS-EVSSNVGDLINL-AILDLSDNELTD------------------------VPCELSSLFHLKSLFLGGNP 130 (263)
Q Consensus 77 ~L~l~~~~l~-~lp~~~~~l~~L-~~L~l~~n~l~~------------------------l~~~~~~l~~L~~L~l~~n~ 130 (263)
++++++|.+. .+|..+..+..+ +.+++++|.++. +|..++.+++++.+++.+|.
T Consensus 153 ~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 232 (313)
T d1ogqa_ 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred eeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999888 778877666655 677777766542 23334556667777777776
Q ss_pred CCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--ccc-ccChhHHhhcCCc
Q psy3787 131 IKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVI-NIPESVYMRGMSS 207 (263)
Q Consensus 131 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~-~l~~~~~~~~~~~ 207 (263)
+...++.... ...++.++++.+.+ .+.+|..+..+++|++|+++ +++ .+|. ... +
T Consensus 233 l~~~~~~~~~--~~~L~~L~Ls~N~l---------------~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~----L 290 (313)
T d1ogqa_ 233 LAFDLGKVGL--SKNLNGLDLRNNRI---------------YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGN----L 290 (313)
T ss_dssp ECCBGGGCCC--CTTCCEEECCSSCC---------------EECCCGGGGGCTTCCEEECCSSEEEEECCC-STT----G
T ss_pred cccccccccc--ccccccccCccCee---------------cccCChHHhCCCCCCEEECcCCcccccCCC-ccc----C
Confidence 6664443222 23556666666664 45788899999999999999 775 7884 222 4
Q ss_pred cceeEEEeccCCc-ccccC
Q psy3787 208 QECTIEINIDKYK-LDRTK 225 (263)
Q Consensus 208 ~~L~~~L~ls~n~-l~~ip 225 (263)
++|+. +++++|+ ++..|
T Consensus 291 ~~L~~-l~l~~N~~l~g~p 308 (313)
T d1ogqa_ 291 QRFDV-SAYANNKCLCGSP 308 (313)
T ss_dssp GGSCG-GGTCSSSEEESTT
T ss_pred CCCCH-HHhCCCccccCCC
Confidence 46999 9999997 55544
No 9
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.74 E-value=2.8e-17 Score=135.32 Aligned_cols=229 Identities=21% Similarity=0.220 Sum_probs=155.4
Q ss_pred CCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 5 LKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 5 L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
.+.++.++++++. +|+ +. +.+++|++++|+++.++ +|.++++|++|++++|.+..+++.+|..+++|++++++
T Consensus 12 ~~~~~C~~~~L~~--lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~ 87 (305)
T d1xkua_ 12 LRVVQCSDLGLEK--VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87 (305)
T ss_dssp TTEEECTTSCCCS--CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCCc--cCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence 4678888888887 666 42 68999999999999987 48899999999999999999988889999999999999
Q ss_pred cCcCccccccccCCCCcCEEEccCCcCCCcccc-ccCCCcccEEEecCCCCCCcchHHHHhH-HHHhhhhhCCCCcccc-
Q psy3787 82 NNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQDS-KRIISHIKTSRLDYHC- 158 (263)
Q Consensus 82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~~l~~l~~~~~~~~~- 158 (263)
+|+++.+|..+ ...++.+...+|.+..++.. +........+....|............. ...+..++...+.+..
T Consensus 88 ~n~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l 165 (305)
T d1xkua_ 88 KNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 165 (305)
T ss_dssp SSCCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CCccCcCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc
Confidence 99999998764 34678888888877765432 4444455555555543332211111110 1222333332222100
Q ss_pred -----cccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccccc
Q psy3787 159 -----QNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCK 231 (263)
Q Consensus 159 -----~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~ 231 (263)
..+..-...........+..+..++.+++|+++ .++.++...+.... +|+. |++++|+|+.+|. .+..
T Consensus 166 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~---~L~~-L~L~~N~L~~lp~-~l~~ 240 (305)
T d1xkua_ 166 PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP---HLRE-LHLNNNKLVKVPG-GLAD 240 (305)
T ss_dssp CSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST---TCCE-EECCSSCCSSCCT-TTTT
T ss_pred CcccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccc---ccee-eeccccccccccc-cccc
Confidence 000000000011133455668888999999999 78888766555433 7999 9999999999986 4555
Q ss_pred ccccccccccCCc
Q psy3787 232 VINIPESVYMNRP 244 (263)
Q Consensus 232 ~~~l~~~~~~~~~ 244 (263)
+.++..+.+.+|+
T Consensus 241 l~~L~~L~Ls~N~ 253 (305)
T d1xkua_ 241 HKYIQVVYLHNNN 253 (305)
T ss_dssp CSSCCEEECCSSC
T ss_pred ccCCCEEECCCCc
Confidence 6778888887775
No 10
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.73 E-value=2.1e-17 Score=128.93 Aligned_cols=107 Identities=29% Similarity=0.445 Sum_probs=85.2
Q ss_pred CCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEc
Q psy3787 24 IDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDL 103 (263)
Q Consensus 24 ~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l 103 (263)
..+..|+.|++++|.++.++.+..+++|++|++++|.++++++ ++.+++|++|++++|+++.+|. +..+++|+.+++
T Consensus 43 ~~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~l 119 (210)
T d1h6ta2 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (210)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred HHhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccc--cccCcccccccccccccccccc-cccccccccccc
Confidence 3467788888888888887777788888888888888887764 5678888888888888888774 677888888888
Q ss_pred cCCcCCCccccccCCCcccEEEecCCCCCCc
Q psy3787 104 SDNELTDVPCELSSLFHLKSLFLGGNPIKTV 134 (263)
Q Consensus 104 ~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~ 134 (263)
++|.+..++ .+..++.++.+++++|.++..
T Consensus 120 ~~~~~~~~~-~l~~l~~l~~l~~~~n~l~~~ 149 (210)
T d1h6ta2 120 EHNGISDIN-GLVHLPQLESLYLGNNKITDI 149 (210)
T ss_dssp TTSCCCCCG-GGGGCTTCCEEECCSSCCCCC
T ss_pred ccccccccc-ccccccccccccccccccccc
Confidence 888877665 577788888888888876654
No 11
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.71 E-value=8.9e-17 Score=124.27 Aligned_cols=155 Identities=22% Similarity=0.298 Sum_probs=118.8
Q ss_pred ccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcC
Q psy3787 20 LPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLA 99 (263)
Q Consensus 20 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~ 99 (263)
......+++++.|++++|.++.++.+..+++|++|++++|.++++++ ++++++|++|++++|.+..++. +..++.|+
T Consensus 33 ~~~~~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~ 109 (199)
T d2omxa2 33 TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLT 109 (199)
T ss_dssp EECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCS
T ss_pred ccCHHHhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc--ccCCcccccccccccccccccc-cccccccc
Confidence 33345678888999999998888888888899999999998888765 7788899999999988887764 67888899
Q ss_pred EEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccc
Q psy3787 100 ILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDK 179 (263)
Q Consensus 100 ~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (263)
.++++++.+..++ .+..+++|+.+++++|.+..++. +
T Consensus 110 ~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~------------------------------------------l 146 (199)
T d2omxa2 110 GLTLFNNQITDID-PLKNLTNLNRLELSSNTISDISA------------------------------------------L 146 (199)
T ss_dssp EEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGG------------------------------------------G
T ss_pred ccccccccccccc-ccchhhhhHHhhhhhhhhccccc------------------------------------------c
Confidence 9999888777654 47778888999888887665431 3
Q ss_pred cccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCc
Q psy3787 180 YKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKT 226 (263)
Q Consensus 180 ~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~ 226 (263)
..+++|++|++. .++.++. +.. +++|+. |++++|+++.+|.
T Consensus 147 ~~~~~L~~L~l~~n~l~~l~~-l~~----l~~L~~-L~ls~N~i~~i~~ 189 (199)
T d2omxa2 147 SGLTSLQQLNFSSNQVTDLKP-LAN----LTTLER-LDISSNKVSDISV 189 (199)
T ss_dssp TTCTTCSEEECCSSCCCCCGG-GTT----CTTCCE-EECCSSCCCCCGG
T ss_pred cccccccccccccccccCCcc-ccC----CCCCCE-EECCCCCCCCCcc
Confidence 345677777777 6666653 222 446998 9999998888764
No 12
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.70 E-value=1.2e-16 Score=123.61 Aligned_cols=128 Identities=30% Similarity=0.442 Sum_probs=113.6
Q ss_pred CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
+.+++.|+++++.+.. ++.++.+++|++|++++|+++.++.+..+++|++|++++|.+..+++ +..+++|+.++++
T Consensus 39 l~~l~~L~l~~~~i~~--l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~ 114 (199)
T d2omxa2 39 LDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 114 (199)
T ss_dssp HTTCCEEECTTSCCCC--CTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred hcCCCEEECCCCCCCC--ccccccCCCcCcCccccccccCcccccCCcccccccccccccccccc--ccccccccccccc
Confidence 4678999999999987 66788999999999999999998889999999999999999888764 7899999999999
Q ss_pred cCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcc
Q psy3787 82 NNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVR 135 (263)
Q Consensus 82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~ 135 (263)
++....++. +..+++|+.+++++|.+..++ .+..+++++.+++.+|.++.++
T Consensus 115 ~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~ 166 (199)
T d2omxa2 115 NNQITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLK 166 (199)
T ss_dssp SSCCCCCGG-GTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG
T ss_pred ccccccccc-cchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCCc
Confidence 998887653 678899999999999998776 5889999999999999888764
No 13
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.70 E-value=9e-17 Score=127.77 Aligned_cols=211 Identities=16% Similarity=0.232 Sum_probs=149.5
Q ss_pred CEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCC-CchhhhhCCCCccEEEee
Q psy3787 6 KTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINN-MENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 6 ~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~ 81 (263)
+.++.++.+++. +|+ + .+++++|++++|.++.+| .|.++++|++|++++|.+.+ +++.+|..++.+.++.+.
T Consensus 11 ~~i~c~~~~l~~--iP~~l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~ 86 (242)
T d1xwdc1 11 RVFLCQESKVTE--IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 86 (242)
T ss_dssp SEEEEESCSCSS--CCSCS--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred CEEEEeCCCCCC--cCCCC--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence 577888888776 665 3 257899999999999877 37889999999999998875 566678889999999887
Q ss_pred c-CcCcccc-ccccCCCCcCEEEccCCcCCCccc--cccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccc
Q psy3787 82 N-NKISEVS-SNVGDLINLAILDLSDNELTDVPC--ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYH 157 (263)
Q Consensus 82 ~-~~l~~lp-~~~~~l~~L~~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 157 (263)
+ +.+..++ ..+..+++|++++++++.+...+. .+..+..+..+....+.+..++...+......+..++...+.
T Consensus 87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~-- 164 (242)
T d1xwdc1 87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-- 164 (242)
T ss_dssp CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC--
T ss_pred ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccc--
Confidence 6 5676554 557889999999999998886643 244556666666677778777765544322233344443433
Q ss_pred ccccCCCCCCCcCCcccccccccccCCcceec-cc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccc
Q psy3787 158 CQNVDGGGMSSQESTSEINIDKYKLDRTKTLT-LC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVIN 234 (263)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~-l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~ 234 (263)
...++.......+++.+. ++ +++.+|.+.|... ++|+. |++++|+|+.+|...+..+.+
T Consensus 165 --------------l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l---~~L~~-L~Ls~N~l~~l~~~~~~~l~~ 226 (242)
T d1xwdc1 165 --------------IQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA---SGPVI-LDISRTRIHSLPSYGLENLKK 226 (242)
T ss_dssp --------------CCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTS---CCCSE-EECTTSCCCCCCSSSCTTCCE
T ss_pred --------------ccccccccccchhhhccccccccccccccHHHhcCC---CCCCE-EECCCCcCCccCHHHHcCCcc
Confidence 334444445556665554 45 7899998766543 37999 999999999999877755555
Q ss_pred cccccc
Q psy3787 235 IPESVY 240 (263)
Q Consensus 235 l~~~~~ 240 (263)
+..+..
T Consensus 227 L~~l~~ 232 (242)
T d1xwdc1 227 LRARST 232 (242)
T ss_dssp EESSSE
T ss_pred cccCcC
Confidence 544443
No 14
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}
Probab=99.70 E-value=2.7e-16 Score=123.94 Aligned_cols=196 Identities=20% Similarity=0.243 Sum_probs=139.2
Q ss_pred eecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCcccc
Q psy3787 10 LSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVS 89 (263)
Q Consensus 10 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp 89 (263)
+..+++++ ....+.+.+|+.|++.+|.++.++.+..+++|+.|++++|.+.++.+ +..+++++.+++++|.++.++
T Consensus 26 l~~~~~~d--~~~~~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~ 101 (227)
T d1h6ua2 26 AGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS 101 (227)
T ss_dssp TTCSSTTS--EECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG
T ss_pred hCCCCcCC--cCCHHHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccccc
Confidence 33444444 34466778889999999988888878888899999999998887765 778888999999888888776
Q ss_pred ccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCc
Q psy3787 90 SNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQ 169 (263)
Q Consensus 90 ~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 169 (263)
. +..++.|+.+.++++....++ .+...+.+..+.++.+.+...... .. ...++.+....+.+
T Consensus 102 ~-l~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~-~~--~~~L~~L~l~~n~~------------- 163 (227)
T d1h6ua2 102 A-IAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNISPL-AG--LTNLQYLSIGNAQV------------- 163 (227)
T ss_dssp G-GTTCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSSCCCCCGGG-GG--CTTCCEEECCSSCC-------------
T ss_pred c-ccccccccccccccccccccc-hhccccchhhhhchhhhhchhhhh-cc--cccccccccccccc-------------
Confidence 4 567888899998888776654 356677888888888877665431 11 23455555544441
Q ss_pred CCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccccccccccccc
Q psy3787 170 ESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESV 239 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~ 239 (263)
.. ...+..+++|++|+++ .++.++. +.. +++|+. |++++|+++.+|+.. .+.++..+.
T Consensus 164 ---~~-~~~l~~l~~L~~L~Ls~n~l~~l~~-l~~----l~~L~~-L~Ls~N~lt~i~~l~--~l~~L~~L~ 223 (227)
T d1h6ua2 164 ---SD-LTPLANLSKLTTLKADDNKISDISP-LAS----LPNLIE-VHLKNNQISDVSPLA--NTSNLFIVT 223 (227)
T ss_dssp ---CC-CGGGTTCTTCCEEECCSSCCCCCGG-GGG----CTTCCE-EECTTSCCCBCGGGT--TCTTCCEEE
T ss_pred ---cc-chhhcccccceecccCCCccCCChh-hcC----CCCCCE-EECcCCcCCCCcccc--cCCCCCEEE
Confidence 11 1237788999999999 7777764 333 346999 999999999988633 234444443
No 15
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.69 E-value=2.1e-16 Score=123.13 Aligned_cols=164 Identities=26% Similarity=0.333 Sum_probs=136.8
Q ss_pred CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
+.+++.|++++|.+.. ++.+..+++|++|++++|.++.++.+..+++|++|++++|++++++. +..+++|+.+++.
T Consensus 45 L~~L~~L~l~~~~i~~--l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~ 120 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLE 120 (210)
T ss_dssp HHTCCEEECTTSCCCC--CTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECT
T ss_pred hcCccEEECcCCCCCC--chhHhhCCCCCEEeCCCccccCccccccCcccccccccccccccccc--ccccccccccccc
Confidence 3578999999999987 66788999999999999999999888899999999999999998753 7889999999999
Q ss_pred cCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccccc
Q psy3787 82 NNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNV 161 (263)
Q Consensus 82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 161 (263)
+|.+..++. +..++.++.++++.|.++..+ .+..+++|+.+++++|.++++++ ... ...++.++++.+.
T Consensus 121 ~~~~~~~~~-l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~-l~~--l~~L~~L~Ls~N~------ 189 (210)
T d1h6ta2 121 HNGISDING-LVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP-LAG--LTKLQNLYLSKNH------ 189 (210)
T ss_dssp TSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTT--CTTCCEEECCSSC------
T ss_pred ccccccccc-ccccccccccccccccccccc-ccccccccccccccccccccccc-ccC--CCCCCEEECCCCC------
Confidence 999887654 677889999999999988765 57788999999999999998764 111 3467777777666
Q ss_pred CCCCCCCcCCcccccccccccCCcceeccc
Q psy3787 162 DGGGMSSQESTSEINIDKYKLDRTKTLTLC 191 (263)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 191 (263)
...++ .+..+++|++|+++
T Consensus 190 ----------i~~l~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 190 ----------ISDLR-ALAGLKNLDVLELF 208 (210)
T ss_dssp ----------CCBCG-GGTTCTTCSEEEEE
T ss_pred ----------CCCCh-hhcCCCCCCEEEcc
Confidence 34443 58888999999885
No 16
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}
Probab=99.68 E-value=4e-16 Score=131.77 Aligned_cols=192 Identities=20% Similarity=0.280 Sum_probs=131.4
Q ss_pred ccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcC
Q psy3787 20 LPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLA 99 (263)
Q Consensus 20 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~ 99 (263)
...+..+++++.+++++|.++.++.+..+++|+.+++++|.++.++ .+..+++++.+++++|.++.++. +..+++|+
T Consensus 190 ~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~ 266 (384)
T d2omza2 190 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP-LSGLTKLT 266 (384)
T ss_dssp CGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCS
T ss_pred ccccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcc--hhhcccccchhccccCccCCCCc-ccccccCC
Confidence 3346677788888888888777766666777888888888777754 26677788888888888776654 56677788
Q ss_pred EEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccc
Q psy3787 100 ILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDK 179 (263)
Q Consensus 100 ~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (263)
.++++++.++.++ .+..++.++.+.+..|.++.++.. .. ...+..++++.+. ...++ .+
T Consensus 267 ~L~l~~~~l~~~~-~~~~~~~l~~l~~~~n~l~~~~~~-~~--~~~l~~L~ls~n~----------------l~~l~-~l 325 (384)
T d2omza2 267 ELKLGANQISNIS-PLAGLTALTNLELNENQLEDISPI-SN--LKNLTYLTLYFNN----------------ISDIS-PV 325 (384)
T ss_dssp EEECCSSCCCCCG-GGTTCTTCSEEECCSSCCSCCGGG-GG--CTTCSEEECCSSC----------------CSCCG-GG
T ss_pred EeeccCcccCCCC-cccccccccccccccccccccccc-ch--hcccCeEECCCCC----------------CCCCc-cc
Confidence 8888888777765 366777788888888877775421 11 2344555555544 22232 36
Q ss_pred cccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCC
Q psy3787 180 YKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNR 243 (263)
Q Consensus 180 ~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~ 243 (263)
..+++|++|+++ +++.++ .+.. +++|+. |++++|+++.+++. .++.++..+.+.+|
T Consensus 326 ~~l~~L~~L~L~~n~l~~l~-~l~~----l~~L~~-L~l~~N~l~~l~~l--~~l~~L~~L~L~~N 383 (384)
T d2omza2 326 SSLTKLQRLFFANNKVSDVS-SLAN----LTNINW-LSAGHNQISDLTPL--ANLTRITQLGLNDQ 383 (384)
T ss_dssp GGCTTCCEEECCSSCCCCCG-GGGG----CTTCCE-EECCSSCCCBCGGG--TTCTTCSEEECCCE
T ss_pred ccCCCCCEEECCCCCCCCCh-hHcC----CCCCCE-EECCCCcCCCChhh--ccCCCCCEeeCCCC
Confidence 778899999999 777776 3443 346998 99999999987753 33455655555444
No 17
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.65 E-value=9.7e-17 Score=119.92 Aligned_cols=112 Identities=22% Similarity=0.307 Sum_probs=61.8
Q ss_pred ccCCCCCCcEEEecCCCCCCCcC-CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCcccccc-ccCCCCcC
Q psy3787 22 LFIDMRSLTELNLSYNQLTMLPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSN-VGDLINLA 99 (263)
Q Consensus 22 ~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~ 99 (263)
.+.+..++++|++++|.|+.++. +..+++|++|++++|.+..++. +..+++|++|++++|+++.++.. +..+++|+
T Consensus 13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 90 (162)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCC--cccCcchhhhhcccccccCCCccccccccccc
Confidence 34455555666666666655554 2445556666666665555432 45555666666666666655443 23455566
Q ss_pred EEEccCCcCCCccc--cccCCCcccEEEecCCCCCCcc
Q psy3787 100 ILDLSDNELTDVPC--ELSSLFHLKSLFLGGNPIKTVR 135 (263)
Q Consensus 100 ~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~n~l~~~~ 135 (263)
+|++++|.++.++. .+..+++|+.+++++|+++..+
T Consensus 91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~ 128 (162)
T d1a9na_ 91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128 (162)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred cceeccccccccccccccccccccchhhcCCCcccccc
Confidence 66666665555432 3555566666666666555544
No 18
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.65 E-value=2.2e-15 Score=115.61 Aligned_cols=127 Identities=29% Similarity=0.301 Sum_probs=111.3
Q ss_pred CCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCC-Cc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 5 LKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTM-LP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 5 L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~-l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
.++++.++++++. +|+ +. +++++|++++|.|+. ++ .|..+++|++|++++|.+..+++..+..+++|++|++
T Consensus 10 ~~~v~Cs~~~L~~--iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L 85 (192)
T d1w8aa_ 10 GTTVDCTGRGLKE--IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TTEEECTTSCCSS--CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCEEEEeCCCcCc--cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence 4578999999987 775 42 689999999999974 43 4788999999999999999999999999999999999
Q ss_pred ecCcCccccc-cccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCCcc
Q psy3787 81 KNNKISEVSS-NVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKTVR 135 (263)
Q Consensus 81 ~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~ 135 (263)
++|+++.+|. .+..+++|++|++++|.|+.++. .|..+++|+++++++|++....
T Consensus 86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~ 142 (192)
T d1w8aa_ 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc
Confidence 9999998865 57899999999999999999865 5889999999999999987643
No 19
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}
Probab=99.63 E-value=4.4e-15 Score=116.85 Aligned_cols=185 Identities=21% Similarity=0.300 Sum_probs=146.8
Q ss_pred CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK 81 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 81 (263)
+.+|+.|++.+|+++. ++.+.++++|++|++++|.+..++.+..+++++++++++|.++.+.. +..+++|+.+.++
T Consensus 40 l~~L~~L~l~~~~i~~--l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~--l~~l~~L~~l~l~ 115 (227)
T d1h6ua2 40 LDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLT 115 (227)
T ss_dssp HHTCCEEECTTSCCCC--CTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECT
T ss_pred cCCcCEEECCCCCCCc--chhHhcCCCCcEeecCCceeecccccccccccccccccccccccccc--ccccccccccccc
Confidence 4578999999999987 66799999999999999999988888999999999999999887753 7789999999999
Q ss_pred cCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccccc
Q psy3787 82 NNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNV 161 (263)
Q Consensus 82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 161 (263)
++....++. +.....++.+.++.+.+.... .+..+++|+.+++++|.+...+. +.. ...++.++++.+.
T Consensus 116 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~-l~~--l~~L~~L~Ls~n~------ 184 (227)
T d1h6ua2 116 STQITDVTP-LAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDLTP-LAN--LSKLTTLKADDNK------ 184 (227)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCCGG-GTT--CTTCCEEECCSSC------
T ss_pred cccccccch-hccccchhhhhchhhhhchhh-hhccccccccccccccccccchh-hcc--cccceecccCCCc------
Confidence 998776544 456678889999888887554 46778899999999998887653 111 3457777776665
Q ss_pred CCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccC
Q psy3787 162 DGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDK 218 (263)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~ 218 (263)
...++ .+..+++|++|+++ +++.+++ +.. +++|+. |++++
T Consensus 185 ----------l~~l~-~l~~l~~L~~L~Ls~N~lt~i~~-l~~----l~~L~~-L~lsn 226 (227)
T d1h6ua2 185 ----------ISDIS-PLASLPNLIEVHLKNNQISDVSP-LAN----TSNLFI-VTLTN 226 (227)
T ss_dssp ----------CCCCG-GGGGCTTCCEEECTTSCCCBCGG-GTT----CTTCCE-EEEEE
T ss_pred ----------cCCCh-hhcCCCCCCEEECcCCcCCCCcc-ccc----CCCCCE-EEeeC
Confidence 23333 47889999999999 8888864 332 446998 99874
No 20
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.61 E-value=1.4e-15 Score=120.65 Aligned_cols=199 Identities=15% Similarity=0.179 Sum_probs=145.6
Q ss_pred CCCCEEEeecCccCCCCccc--cCCCCCCcEEEecCCCCCC-Cc--CCCCCCCCcEEEecC-CCCCCCchhhhhCCCCcc
Q psy3787 3 SHLKTLDLSHNKLVSDSLPL--FIDMRSLTELNLSYNQLTM-LP--VCTDCKNLTHLLLGF-NKINNMENDYFLTLTKLS 76 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-l~--~~~~~~~L~~L~l~~-n~~~~~~~~~~~~l~~L~ 76 (263)
+++++|++++|+++. ++. |.++++|++|++++|.+.. ++ .|..++.++++.+.+ +.+...++..|..+++|+
T Consensus 29 ~~l~~L~Ls~n~i~~--l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~ 106 (242)
T d1xwdc1 29 RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 106 (242)
T ss_dssp SCCSEEEEESCCCCE--ECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCC
T ss_pred CCCCEEECcCCcCCc--cChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccc
Confidence 478999999999987 554 8999999999999999874 33 477889999998765 678888888899999999
Q ss_pred EEEeecCcCcccccc--ccCCCCcCEEEccCCcCCCccc-cccCCC-cccEEEecCCCCCCcchHHHHhHHHHhhhhhCC
Q psy3787 77 LLNLKNNKISEVSSN--VGDLINLAILDLSDNELTDVPC-ELSSLF-HLKSLFLGGNPIKTVRNDILQDSKRIISHIKTS 152 (263)
Q Consensus 77 ~L~l~~~~l~~lp~~--~~~l~~L~~L~l~~n~l~~l~~-~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~ 152 (263)
++++++|+++..+.. ...+..+..+...++.+..++. .+..++ .+..+++.+|.++.++...+... .....+...
T Consensus 107 ~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~-~l~~~~~l~ 185 (242)
T d1xwdc1 107 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGT-QLDELNLSD 185 (242)
T ss_dssp EEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTC-CEEEEECTT
T ss_pred ccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccch-hhhcccccc
Confidence 999999999866542 3455666666667777877753 355554 78899999999999887765543 111112222
Q ss_pred CCcccccccCCCCCCCcCCccccccc-ccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCc
Q psy3787 153 RLDYHCQNVDGGGMSSQESTSEINID-KYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKT 226 (263)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~ 226 (263)
.+. ...++.. +.++++|++|+++ +++.+|.+.+.. +++|+. +++.+ +..+|+
T Consensus 186 ~n~----------------l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~---l~~L~~-l~~~~--l~~lp~ 240 (242)
T d1xwdc1 186 NNN----------------LEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN---LKKLRA-RSTYN--LKKLPT 240 (242)
T ss_dssp CTT----------------CCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTT---CCEEES-SSEES--SSCSCC
T ss_pred ccc----------------cccccHHHhcCCCCCCEEECCCCcCCccCHHHHcC---Cccccc-CcCCC--CCcCCC
Confidence 222 3445443 6889999999999 899998765443 346776 66643 556665
No 21
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.59 E-value=3.5e-15 Score=106.22 Aligned_cols=102 Identities=28% Similarity=0.314 Sum_probs=62.7
Q ss_pred EEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCCcCCC
Q psy3787 31 ELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTD 110 (263)
Q Consensus 31 ~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~ 110 (263)
.|++++|+++.++.+..+++|++|++++|.++.+++. +..+++|+.|++++|.++.+|. +..+++|+++++++|.++.
T Consensus 2 ~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~-~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N~i~~ 79 (124)
T d1dcea3 2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQQ 79 (124)
T ss_dssp EEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCCS
T ss_pred EEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhh-hhhhhcccccccccccccccCc-cccccccCeEECCCCccCC
Confidence 4566666666555555666666666666666655432 5566666666666666666653 5566666666666666665
Q ss_pred ccc--cccCCCcccEEEecCCCCCCc
Q psy3787 111 VPC--ELSSLFHLKSLFLGGNPIKTV 134 (263)
Q Consensus 111 l~~--~~~~l~~L~~L~l~~n~l~~~ 134 (263)
++. .++.+++|+.+++++|+++..
T Consensus 80 ~~~~~~l~~~~~L~~L~l~~N~i~~~ 105 (124)
T d1dcea3 80 SAAIQPLVSCPRLVLLNLQGNSLCQE 105 (124)
T ss_dssp SSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCchhhcCCCCCCEEECCCCcCCcC
Confidence 542 356666677777776666543
No 22
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.58 E-value=3.6e-15 Score=106.20 Aligned_cols=115 Identities=26% Similarity=0.331 Sum_probs=98.4
Q ss_pred CEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCc
Q psy3787 6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK 84 (263)
Q Consensus 6 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 84 (263)
|.|++++|+++. ++.+.++++|++|++++|.++.+| .+..+++|+.|++++|.++.+++ +..+++|+++++++|+
T Consensus 1 R~L~Ls~n~l~~--l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~--~~~l~~L~~L~l~~N~ 76 (124)
T d1dcea3 1 RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNR 76 (124)
T ss_dssp SEEECTTSCCSS--CCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCCCC--CcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc--cccccccCeEECCCCc
Confidence 579999999987 777999999999999999999997 48899999999999999998854 8899999999999999
Q ss_pred Cccccc--cccCCCCcCEEEccCCcCCCcc---cc-ccCCCcccEE
Q psy3787 85 ISEVSS--NVGDLINLAILDLSDNELTDVP---CE-LSSLFHLKSL 124 (263)
Q Consensus 85 l~~lp~--~~~~l~~L~~L~l~~n~l~~l~---~~-~~~l~~L~~L 124 (263)
++.++. .+..+++|+++++++|.+...+ .. ...+++++.+
T Consensus 77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred cCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 997764 5788999999999999987543 22 3446666654
No 23
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.55 E-value=2.7e-15 Score=115.08 Aligned_cols=108 Identities=35% Similarity=0.414 Sum_probs=96.0
Q ss_pred CCCCEEEeecCccCCCCc-cccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787 3 SHLKTLDLSHNKLVSDSL-PLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN 79 (263)
Q Consensus 3 ~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 79 (263)
+++++|++++|+++.... ..|.++++|+.|++++|.+..++ .+..++.|++|++++|++..+++.+|.++++|++|+
T Consensus 29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~ 108 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence 468999999999976222 23899999999999999999776 488899999999999999999999999999999999
Q ss_pred eecCcCccccc-cccCCCCcCEEEccCCcCCC
Q psy3787 80 LKNNKISEVSS-NVGDLINLAILDLSDNELTD 110 (263)
Q Consensus 80 l~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~ 110 (263)
+++|+++.+|. .+..+.+|+++++++|.+..
T Consensus 109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~ 140 (192)
T d1w8aa_ 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred cCCccccccCHHHhcCCccccccccccccccc
Confidence 99999998865 57899999999999998874
No 24
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.55 E-value=2.7e-15 Score=111.95 Aligned_cols=122 Identities=20% Similarity=0.222 Sum_probs=108.2
Q ss_pred CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 80 (263)
+..+++|++++|+++. ++. +..+++|+.|++++|.++.++.+..+++|++|++++|.++.+++..+..+++|++|++
T Consensus 17 ~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L 94 (162)
T d1a9na_ 17 AVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 94 (162)
T ss_dssp TTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred cCcCcEEECCCCCCCc--cCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCcccccccccccccee
Confidence 4578999999999998 666 6789999999999999999888999999999999999999988877788999999999
Q ss_pred ecCcCccccc--cccCCCCcCEEEccCCcCCCccc----cccCCCcccEEE
Q psy3787 81 KNNKISEVSS--NVGDLINLAILDLSDNELTDVPC----ELSSLFHLKSLF 125 (263)
Q Consensus 81 ~~~~l~~lp~--~~~~l~~L~~L~l~~n~l~~l~~----~~~~l~~L~~L~ 125 (263)
++|+++.++. .+..+++|+++++++|.++..|. .+..+++|+.|+
T Consensus 95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 95 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred ccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 9999998764 57889999999999999987763 377889999886
No 25
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}
Probab=99.47 E-value=5.8e-13 Score=110.44 Aligned_cols=95 Identities=28% Similarity=0.406 Sum_probs=60.0
Q ss_pred CCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecC
Q psy3787 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNN 83 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 83 (263)
++++|++++++++. +|++ .++|++|++++|+++.+|.. ..+|+.|++++|.++.+.. + .+.|++|++++|
T Consensus 39 ~l~~LdLs~~~L~~--lp~~--~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~--l--p~~L~~L~L~~n 108 (353)
T d1jl5a_ 39 QAHELELNNLGLSS--LPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSD--L--PPLLEYLGVSNN 108 (353)
T ss_dssp TCSEEECTTSCCSC--CCSC--CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCS--C--CTTCCEEECCSS
T ss_pred CCCEEEeCCCCCCC--CCCC--CCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhh--h--cccccccccccc
Confidence 46778888887776 6642 46778888888887777643 3466666777666655432 1 134666666666
Q ss_pred cCccccccccCCCCcCEEEccCCcCC
Q psy3787 84 KISEVSSNVGDLINLAILDLSDNELT 109 (263)
Q Consensus 84 ~l~~lp~~~~~l~~L~~L~l~~n~l~ 109 (263)
.+..+|. ++.+++|++++++++.+.
T Consensus 109 ~l~~lp~-~~~l~~L~~L~l~~~~~~ 133 (353)
T d1jl5a_ 109 QLEKLPE-LQNSSFLKIIDVDNNSLK 133 (353)
T ss_dssp CCSSCCC-CTTCTTCCEEECCSSCCS
T ss_pred ccccccc-hhhhccceeecccccccc
Confidence 6666654 355666666666655443
No 26
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.33 E-value=6.4e-12 Score=92.63 Aligned_cols=109 Identities=20% Similarity=0.188 Sum_probs=87.9
Q ss_pred CCCCCCcEEEecCCCCCCCc-CCCCCCCCcEEEecCC-CCCCCchhhhhCCCCccEEEeecCcCcccc-ccccCCCCcCE
Q psy3787 24 IDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFN-KINNMENDYFLTLTKLSLLNLKNNKISEVS-SNVGDLINLAI 100 (263)
Q Consensus 24 ~~l~~L~~L~l~~n~l~~l~-~~~~~~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~ 100 (263)
+.+...+.++.+++.+...| .+..+++++.|+++++ .++.+++.+|.++++|+.|++++|+++.++ ..+..+++|++
T Consensus 5 C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~ 84 (156)
T d2ifga3 5 CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84 (156)
T ss_dssp SCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred CCcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence 44455667888888877665 4777888889998765 588888888889999999999999999884 45788899999
Q ss_pred EEccCCcCCCccccccCCCcccEEEecCCCCC
Q psy3787 101 LDLSDNELTDVPCELSSLFHLKSLFLGGNPIK 132 (263)
Q Consensus 101 L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~ 132 (263)
|++++|.++.+|..+.....|+.|++++|++.
T Consensus 85 L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 85 LNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp EECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred eeccCCCCcccChhhhccccccccccCCCccc
Confidence 99999999988776555557999999999875
No 27
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.30 E-value=1.2e-14 Score=111.90 Aligned_cols=128 Identities=27% Similarity=0.355 Sum_probs=101.6
Q ss_pred CCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecC
Q psy3787 5 LKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNN 83 (263)
Q Consensus 5 L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 83 (263)
++.+++.+.--....++. +..+++|++|++++|.|+.++.+..+++|+.|++++|.++.+++. ...+++|++|++++|
T Consensus 25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~-~~~~~~L~~L~l~~N 103 (198)
T d1m9la_ 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYN 103 (198)
T ss_dssp CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSH-HHHHHHCCEEECSEE
T ss_pred cceeeeecccCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhccccccccccc-ccccccccccccccc
Confidence 445566554211112444 888999999999999999988888899999999999999887643 344568999999999
Q ss_pred cCccccccccCCCCcCEEEccCCcCCCccc--cccCCCcccEEEecCCCCCCc
Q psy3787 84 KISEVSSNVGDLINLAILDLSDNELTDVPC--ELSSLFHLKSLFLGGNPIKTV 134 (263)
Q Consensus 84 ~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~n~l~~~ 134 (263)
+++.++. +..+++|++|++++|.++.++. .++.+++|+.|++++|++...
T Consensus 104 ~i~~l~~-~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~ 155 (198)
T d1m9la_ 104 QIASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp ECCCHHH-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred ccccccc-ccccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence 9998754 6678889999999999998763 588999999999999987664
No 28
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.29 E-value=9.5e-12 Score=91.69 Aligned_cols=104 Identities=24% Similarity=0.188 Sum_probs=90.8
Q ss_pred CCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCC-CCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787 4 HLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQ-LTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN 79 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 79 (263)
..+.++.+++.+.. .|. +..+++|+.|++++++ ++.++ +|.++++|+.|++++|++..+++.+|..+++|++|+
T Consensus 9 ~~~~l~c~~~~~~~--~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 86 (156)
T d2ifga3 9 GSSGLRCTRDGALD--SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (156)
T ss_dssp SSSCEECCSSCCCT--TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred CCCeEEecCCCCcc--CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence 35668888888776 555 8889999999998774 88776 589999999999999999999999999999999999
Q ss_pred eecCcCccccccccCCCCcCEEEccCCcCC
Q psy3787 80 LKNNKISEVSSNVGDLINLAILDLSDNELT 109 (263)
Q Consensus 80 l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~ 109 (263)
+++|+++.+|..+.....+++|++++|.+.
T Consensus 87 Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 87 LSFNALESLSWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp CCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccCCCCcccChhhhccccccccccCCCccc
Confidence 999999999887656668999999999875
No 29
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.27 E-value=4.3e-14 Score=108.76 Aligned_cols=124 Identities=19% Similarity=0.242 Sum_probs=76.8
Q ss_pred CcEEEecCC--CCCCCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccC
Q psy3787 29 LTELNLSYN--QLTMLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSD 105 (263)
Q Consensus 29 L~~L~l~~n--~l~~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~ 105 (263)
++.+++.+. .+..++ .+..+++|++|++++|.++.+++ +..+++|+.|++++|.++.+|.....+..|++|++++
T Consensus 25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~--l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~ 102 (198)
T d1m9la_ 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCC--HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSE
T ss_pred cceeeeecccCchhhhhhHHhcccccceeECcccCCCCccc--ccCCccccChhhccccccccccccccccccccccccc
Confidence 444455443 233443 35566777777777777776643 6667777777777777777665444455677777777
Q ss_pred CcCCCccccccCCCcccEEEecCCCCCCcch-HHHHhHHHHhhhhhCCCCcc
Q psy3787 106 NELTDVPCELSSLFHLKSLFLGGNPIKTVRN-DILQDSKRIISHIKTSRLDY 156 (263)
Q Consensus 106 n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~l~~l~~~~~~~ 156 (263)
|.++.++ .+..+++|+.|++++|.++.++. ..+.. ...++.+++.++++
T Consensus 103 N~i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~-l~~L~~L~L~~N~l 152 (198)
T d1m9la_ 103 NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAA-LDKLEDLLLAGNPL 152 (198)
T ss_dssp EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTT-TTTCSEEEECSSHH
T ss_pred ccccccc-cccccccccccccccchhccccccccccC-CCccceeecCCCcc
Confidence 7777664 36666777777777777776643 11111 34566666666553
No 30
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}
Probab=99.21 E-value=1.7e-10 Score=95.14 Aligned_cols=100 Identities=26% Similarity=0.314 Sum_probs=77.5
Q ss_pred CCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCC
Q psy3787 27 RSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDN 106 (263)
Q Consensus 27 ~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n 106 (263)
.+++.|+++++.++.+|++ .++|++|++++|++++++.. ..+|+.|++++|+++.++.. ...|++|++++|
T Consensus 38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n 108 (353)
T d1jl5a_ 38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL----PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN 108 (353)
T ss_dssp HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS
T ss_pred cCCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCcccccc----hhhhhhhhhhhcccchhhhh---cccccccccccc
Confidence 3688889999988888853 56888899999888877542 46788888888888877642 245888999988
Q ss_pred cCCCccccccCCCcccEEEecCCCCCCcch
Q psy3787 107 ELTDVPCELSSLFHLKSLFLGGNPIKTVRN 136 (263)
Q Consensus 107 ~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~ 136 (263)
.+..+|. ++.+++|+.++++++.+...+.
T Consensus 109 ~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~ 137 (353)
T d1jl5a_ 109 QLEKLPE-LQNSSFLKIIDVDNNSLKKLPD 137 (353)
T ss_dssp CCSSCCC-CTTCTTCCEEECCSSCCSCCCC
T ss_pred ccccccc-hhhhccceeecccccccccccc
Confidence 8888874 5778888999888887776554
No 31
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.11 E-value=4.2e-11 Score=96.91 Aligned_cols=180 Identities=16% Similarity=0.166 Sum_probs=100.3
Q ss_pred CCCCCcEEEecCCCCCC--CcC-CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecC-cCcc--ccccccCCCCc
Q psy3787 25 DMRSLTELNLSYNQLTM--LPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNN-KISE--VSSNVGDLINL 98 (263)
Q Consensus 25 ~l~~L~~L~l~~n~l~~--l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~-~l~~--lp~~~~~l~~L 98 (263)
...+|++|+++++.++. +.. +..+++|++|+++++.+.......+..+++|++|++++| .++. +......+++|
T Consensus 44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L 123 (284)
T d2astb2 44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123 (284)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence 45577888888777652 222 566778888888888776555556777778888888775 5552 22223456778
Q ss_pred CEEEccCC-cCCC--cccccc-CCCcccEEEecCCC--CCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCc
Q psy3787 99 AILDLSDN-ELTD--VPCELS-SLFHLKSLFLGGNP--IKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQEST 172 (263)
Q Consensus 99 ~~L~l~~n-~l~~--l~~~~~-~l~~L~~L~l~~n~--l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 172 (263)
++|+++++ .++. +...+. ..+.|+.++++++. ++...-..+....+.+++++++++. .+ .
T Consensus 124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~----~i----------t 189 (284)
T d2astb2 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV----ML----------K 189 (284)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT----TC----------C
T ss_pred cccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccccccc----CC----------C
Confidence 88888775 3442 222222 34577888777642 2221111111112345555554332 11 2
Q ss_pred ccccccccccCCcceeccccccccChhHHhhcCCccceeEEEeccCC
Q psy3787 173 SEINIDKYKLDRTKTLTLCKVINIPESVYMRGMSSQECTIEINIDKY 219 (263)
Q Consensus 173 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~~L~ls~n 219 (263)
...+..+..+++|++|++++-..+.+.......++++|+. |+++++
T Consensus 190 d~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~-L~l~~~ 235 (284)
T d2astb2 190 NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT-LQVFGI 235 (284)
T ss_dssp GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE-EECTTS
T ss_pred chhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCE-EeeeCC
Confidence 2334456677888888888222222222222222456888 888877
No 32
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.05 E-value=4.9e-11 Score=96.49 Aligned_cols=199 Identities=16% Similarity=0.167 Sum_probs=121.9
Q ss_pred CEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCC-cCCCCCCCCcEEEecCCCCCCC-chhhhhCCCCccEEEeecC
Q psy3787 6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTML-PVCTDCKNLTHLLLGFNKINNM-ENDYFLTLTKLSLLNLKNN 83 (263)
Q Consensus 6 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~~ 83 (263)
+++|++++.+....+..+.. .....+.++...+... .......+|++|+++++.+... ....+..+++|++|++.+|
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~ 81 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccccc
Confidence 37888887764321222211 2345566665554432 2334557899999999987643 3455778899999999999
Q ss_pred cCc-cccccccCCCCcCEEEccCC-cCCC--ccccccCCCcccEEEecCC-CCCCcchHH-HHhHHHHhhhhhCCCCccc
Q psy3787 84 KIS-EVSSNVGDLINLAILDLSDN-ELTD--VPCELSSLFHLKSLFLGGN-PIKTVRNDI-LQDSKRIISHIKTSRLDYH 157 (263)
Q Consensus 84 ~l~-~lp~~~~~l~~L~~L~l~~n-~l~~--l~~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~~~~~l~~l~~~~~~~~ 157 (263)
.++ ..+..+..+++|++|+++++ .++. +......+++|+.|+++++ .++...... .......++.+++++..
T Consensus 82 ~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~-- 159 (284)
T d2astb2 82 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR-- 159 (284)
T ss_dssp BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG--
T ss_pred CCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc--
Confidence 887 55666788899999999996 5663 3333567899999999986 343311111 11112345555553321
Q ss_pred ccccCCCCCCCcCCcccccccccccCCcceeccc---ccc-ccChhHHhhcCCccceeEEEeccCC-ccc
Q psy3787 158 CQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC---KVI-NIPESVYMRGMSSQECTIEINIDKY-KLD 222 (263)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~---~~~-~l~~~~~~~~~~~~~L~~~L~ls~n-~l~ 222 (263)
..+. ...+..-+..+++|++|+++ .++ .....+.. +++|+. |++++| .++
T Consensus 160 -~~i~---------~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~----~~~L~~-L~L~~C~~i~ 214 (284)
T d2astb2 160 -KNLQ---------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ----LNYLQH-LSLSRCYDII 214 (284)
T ss_dssp -GGSC---------HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG----CTTCCE-EECTTCTTCC
T ss_pred -cccc---------cccccccccccccccccccccccCCCchhhhhhcc----cCcCCE-EECCCCCCCC
Confidence 0010 11122223567999999998 344 22233333 557999 999996 465
No 33
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=99.00 E-value=1.4e-10 Score=96.16 Aligned_cols=210 Identities=13% Similarity=0.070 Sum_probs=118.0
Q ss_pred CCCCCEEEeecCccCCCC--cc--------ccCCCCCCcEEEecCCCCCCCc------CCCCCCCCcEEEecCCCCCCCc
Q psy3787 2 LSHLKTLDLSHNKLVSDS--LP--------LFIDMRSLTELNLSYNQLTMLP------VCTDCKNLTHLLLGFNKINNME 65 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~--~~--------~~~~l~~L~~L~l~~n~l~~l~------~~~~~~~L~~L~l~~n~~~~~~ 65 (263)
.++|+.++++++...... .+ .+..+++|+.|++++|.++... .+...++|++|++++|.+....
T Consensus 58 ~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~ 137 (344)
T d2ca6a1 58 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA 137 (344)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred CCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccc
Confidence 457788888876544311 01 1556788888888888876422 2345678888888888764211
Q ss_pred hhh-------------hhCCCCccEEEeecCcCc-----cccccccCCCCcCEEEccCCcCCC------ccccccCCCcc
Q psy3787 66 NDY-------------FLTLTKLSLLNLKNNKIS-----EVSSNVGDLINLAILDLSDNELTD------VPCELSSLFHL 121 (263)
Q Consensus 66 ~~~-------------~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~n~l~~------l~~~~~~l~~L 121 (263)
... ....+.++.+.+++|.++ .+...+.....++.++++.|.+.. +...+..++.|
T Consensus 138 ~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L 217 (344)
T d2ca6a1 138 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 217 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred cccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhh
Confidence 111 134567888888888765 233345566778888888887763 22335677788
Q ss_pred cEEEecCCCCCCcchHHHHhH---HHHhhhhhCCCCcccccccCCCCCCCcCCccccccccc--ccCCcceeccc--ccc
Q psy3787 122 KSLFLGGNPIKTVRNDILQDS---KRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKY--KLDRTKTLTLC--KVI 194 (263)
Q Consensus 122 ~~L~l~~n~l~~~~~~~~~~~---~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~--~~~ 194 (263)
+.|++++|.++.......... ...++.++++.+.+ .+.+ ...+...+. ..+.|++|+++ .++
T Consensus 218 ~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i-----~~~g------~~~l~~~l~~~~~~~L~~L~ls~N~i~ 286 (344)
T d2ca6a1 218 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL-----SARG------AAAVVDAFSKLENIGLQTLRLQYNEIE 286 (344)
T ss_dssp CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC-----CHHH------HHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred cccccccccccccccccccccccccccchhhhhhcCcc-----Cchh------hHHHHHHhhhccCCCCCEEECCCCcCC
Confidence 888888887654322222111 22333444433332 1111 111222222 23578888888 443
Q ss_pred cc-ChhHHhhcC-CccceeEEEeccCCcccc
Q psy3787 195 NI-PESVYMRGM-SSQECTIEINIDKYKLDR 223 (263)
Q Consensus 195 ~l-~~~~~~~~~-~~~~L~~~L~ls~n~l~~ 223 (263)
.- ...+..... +.+.|+. |++++|++..
T Consensus 287 ~~~~~~l~~~l~~~~~~L~~-L~l~~N~~~~ 316 (344)
T d2ca6a1 287 LDAVRTLKTVIDEKMPDLLF-LELNGNRFSE 316 (344)
T ss_dssp HHHHHHHHHHHHHHCTTCCE-EECTTSBSCT
T ss_pred hHHHHHHHHHHHccCCCCCE-EECCCCcCCC
Confidence 21 111222111 1235888 8998888764
No 34
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=98.99 E-value=7e-11 Score=98.00 Aligned_cols=232 Identities=15% Similarity=0.105 Sum_probs=148.6
Q ss_pred CCCCCEEEeecCccCCCCccc----cCCCCCCcEEEecCCCCCCCc------------CCCCCCCCcEEEecCCCCCCCc
Q psy3787 2 LSHLKTLDLSHNKLVSDSLPL----FIDMRSLTELNLSYNQLTMLP------------VCTDCKNLTHLLLGFNKINNME 65 (263)
Q Consensus 2 l~~L~~L~l~~n~~~~~~~~~----~~~l~~L~~L~l~~n~l~~l~------------~~~~~~~L~~L~l~~n~~~~~~ 65 (263)
...+++|++++|.+....+.. +...+.|+.++++++...... .+..+++|+.|++++|.++...
T Consensus 30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 109 (344)
T d2ca6a1 30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 109 (344)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence 467899999999886633222 677899999999988765332 2456789999999999887542
Q ss_pred ----hhhhhCCCCccEEEeecCcCcc-----ccc---------cccCCCCcCEEEccCCcCCC-----ccccccCCCccc
Q psy3787 66 ----NDYFLTLTKLSLLNLKNNKISE-----VSS---------NVGDLINLAILDLSDNELTD-----VPCELSSLFHLK 122 (263)
Q Consensus 66 ----~~~~~~l~~L~~L~l~~~~l~~-----lp~---------~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~ 122 (263)
...+...++|++|++++|.++. +.. .......++.+.+++|.+.. +...+...+.++
T Consensus 110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~ 189 (344)
T d2ca6a1 110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 189 (344)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence 2334567899999999998752 111 12356789999999998873 344467788999
Q ss_pred EEEecCCCCCCcchH-HHHh-H--HHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--ccccc
Q psy3787 123 SLFLGGNPIKTVRND-ILQD-S--KRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINI 196 (263)
Q Consensus 123 ~L~l~~n~l~~~~~~-~~~~-~--~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l 196 (263)
.+++++|.+...... .... . ...++.++++.+.+ ...+ ...+...+..++.|++|+++ .++.-
T Consensus 190 ~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i-----~~~g------~~~L~~~l~~~~~L~~L~Ls~n~i~~~ 258 (344)
T d2ca6a1 190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-----THLG------SSALAIALKSWPNLRELGLNDCLLSAR 258 (344)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC-----HHHH------HHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred ccccccccccccccccchhhhhcchhhhcccccccccc-----cccc------cccccccccccccchhhhhhcCccCch
Confidence 999999987753211 1111 1 23455566655542 0000 12344557788999999999 55532
Q ss_pred C-hhHHhhcC--CccceeEEEeccCCcccc-----cCccccccccccccccccCCce
Q psy3787 197 P-ESVYMRGM--SSQECTIEINIDKYKLDR-----TKTLTLCKVINIPESVYMNRPF 245 (263)
Q Consensus 197 ~-~~~~~~~~--~~~~L~~~L~ls~n~l~~-----ip~~~~~~~~~l~~~~~~~~~~ 245 (263)
. ..+..... +.+.|+. |++++|.|+. +......+...+..+.+.||..
T Consensus 259 g~~~l~~~l~~~~~~~L~~-L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~ 314 (344)
T d2ca6a1 259 GAAAVVDAFSKLENIGLQT-LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314 (344)
T ss_dssp HHHHHHHHHHTCSSCCCCE-EECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred hhHHHHHHhhhccCCCCCE-EECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence 2 12222211 1346999 9999999873 2211111234566667777764
No 35
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.28 E-value=3.6e-08 Score=83.58 Aligned_cols=106 Identities=24% Similarity=0.241 Sum_probs=75.7
Q ss_pred CCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCC-----c-CCCCCCCCcEEEecCCCCCCCchhhhh-----C
Q psy3787 4 HLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTML-----P-VCTDCKNLTHLLLGFNKINNMENDYFL-----T 71 (263)
Q Consensus 4 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l-----~-~~~~~~~L~~L~l~~n~~~~~~~~~~~-----~ 71 (263)
+|++||+++++++...+.. +..+++++.|+|++|.++.. . .+..+++|++|++++|.++......+. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 5788899998888744445 66788888999999987731 1 256778889999998887642212221 1
Q ss_pred CCCccEEEeecCcCcc-----ccccccCCCCcCEEEccCCcCC
Q psy3787 72 LTKLSLLNLKNNKISE-----VSSNVGDLINLAILDLSDNELT 109 (263)
Q Consensus 72 l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~n~l~ 109 (263)
..+|++|++++|+++. ++..+...++|++|++++|.++
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~ 125 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 125 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence 2468899999888863 3555677888899998888764
No 36
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.22 E-value=1.5e-07 Score=79.57 Aligned_cols=108 Identities=18% Similarity=0.204 Sum_probs=84.1
Q ss_pred CCCcEEEecCCCCCCCc---CCCCCCCCcEEEecCCCCCCC----chhhhhCCCCccEEEeecCcCcc-----cccccc-
Q psy3787 27 RSLTELNLSYNQLTMLP---VCTDCKNLTHLLLGFNKINNM----ENDYFLTLTKLSLLNLKNNKISE-----VSSNVG- 93 (263)
Q Consensus 27 ~~L~~L~l~~n~l~~l~---~~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~l~~-----lp~~~~- 93 (263)
.+|+.||+++++++... -+..+++++.|++++|.++.. ...++..+++|++|++++|+++. +...+.
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 36899999999998532 245678899999999998742 24456789999999999999872 233333
Q ss_pred CCCCcCEEEccCCcCCC-----ccccccCCCcccEEEecCCCCCCc
Q psy3787 94 DLINLAILDLSDNELTD-----VPCELSSLFHLKSLFLGGNPIKTV 134 (263)
Q Consensus 94 ~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~ 134 (263)
...+|+.|++++|.++. ++..+..+++|+.|++++|.++..
T Consensus 82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~ 127 (460)
T d1z7xw1 82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 127 (460)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhh
Confidence 34579999999999874 355678899999999999988653
No 37
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.94 E-value=7.3e-07 Score=65.19 Aligned_cols=80 Identities=28% Similarity=0.187 Sum_probs=61.4
Q ss_pred cCCCCCCcEEEecCCCCCCCcC----CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCcccc--------c
Q psy3787 23 FIDMRSLTELNLSYNQLTMLPV----CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVS--------S 90 (263)
Q Consensus 23 ~~~l~~L~~L~l~~n~l~~l~~----~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp--------~ 90 (263)
..++++|++|++++|.++.++. +..+++|+.|++++|.+..+..-.+....+++.+++.+|.+.... .
T Consensus 61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~ 140 (162)
T d1koha1 61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA 140 (162)
T ss_dssp HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence 3568899999999999987653 346789999999999999877655556667899999999887432 1
Q ss_pred cccCCCCcCEEE
Q psy3787 91 NVGDLINLAILD 102 (263)
Q Consensus 91 ~~~~l~~L~~L~ 102 (263)
.+..+++|+.||
T Consensus 141 i~~~~P~L~~LD 152 (162)
T d1koha1 141 IRERFPKLLRLD 152 (162)
T ss_dssp HHTTSTTCCEET
T ss_pred HHHHCCCCCEEC
Confidence 245678888886
No 38
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.86 E-value=2.2e-06 Score=62.53 Aligned_cols=80 Identities=21% Similarity=0.191 Sum_probs=63.1
Q ss_pred CCCCCCcEEEecCCCCCCCc--hhhhhCCCCccEEEeecCcCcccccc-ccCCCCcCEEEccCCcCCCcc--------cc
Q psy3787 46 TDCKNLTHLLLGFNKINNME--NDYFLTLTKLSLLNLKNNKISEVSSN-VGDLINLAILDLSDNELTDVP--------CE 114 (263)
Q Consensus 46 ~~~~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~n~l~~l~--------~~ 114 (263)
..+++|++|++++|+++.+. +..+..+++|+.|++++|.++.++.. ......|+.+++++|.+.... ..
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i 141 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence 46789999999999999765 34567899999999999999988762 234457999999999987432 22
Q ss_pred ccCCCcccEEE
Q psy3787 115 LSSLFHLKSLF 125 (263)
Q Consensus 115 ~~~l~~L~~L~ 125 (263)
+..+++|+.||
T Consensus 142 ~~~~P~L~~LD 152 (162)
T d1koha1 142 RERFPKLLRLD 152 (162)
T ss_dssp HTTSTTCCEET
T ss_pred HHHCCCCCEEC
Confidence 56788999875
No 39
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=97.83 E-value=1e-05 Score=59.09 Aligned_cols=106 Identities=12% Similarity=0.109 Sum_probs=72.0
Q ss_pred CCCCCCcEEEecCC-CCCC--Cc----CCCCCCCCcEEEecCCCCCC----CchhhhhCCCCccEEEeecCcCcc-----
Q psy3787 24 IDMRSLTELNLSYN-QLTM--LP----VCTDCKNLTHLLLGFNKINN----MENDYFLTLTKLSLLNLKNNKISE----- 87 (263)
Q Consensus 24 ~~l~~L~~L~l~~n-~l~~--l~----~~~~~~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~~~l~~----- 87 (263)
.+.+.|+.|+++++ .+.. +. .+...++|+.|++++|.++. .....+...+.|++|++++|.++.
T Consensus 12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~ 91 (167)
T d1pgva_ 12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 91 (167)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence 34577888888764 4542 11 35566778888888887763 223445567788888888888872
Q ss_pred ccccccCCCCcCEEEccCCcCCC--------ccccccCCCcccEEEecCC
Q psy3787 88 VSSNVGDLINLAILDLSDNELTD--------VPCELSSLFHLKSLFLGGN 129 (263)
Q Consensus 88 lp~~~~~l~~L~~L~l~~n~l~~--------l~~~~~~l~~L~~L~l~~n 129 (263)
+...+...++|++|++++|.+.. +...+...++|+.++++.+
T Consensus 92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 34556777889999998876553 2334566788888888665
No 40
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=97.60 E-value=6e-05 Score=54.85 Aligned_cols=92 Identities=13% Similarity=0.107 Sum_probs=69.2
Q ss_pred CCCCCcEEEecCC-CCCCC----chhhhhCCCCccEEEeecCcCc-----cccccccCCCCcCEEEccCCcCCC-----c
Q psy3787 47 DCKNLTHLLLGFN-KINNM----ENDYFLTLTKLSLLNLKNNKIS-----EVSSNVGDLINLAILDLSDNELTD-----V 111 (263)
Q Consensus 47 ~~~~L~~L~l~~n-~~~~~----~~~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~n~l~~-----l 111 (263)
+.++|++|+++++ .++.. ...++...+.|+.|++++|.++ .+...+...+.|++|++++|.++. +
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l 92 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 92 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence 4578999999975 46531 2334667788999999999887 234455667889999999999984 3
Q ss_pred cccccCCCcccEEEecCCCCCCcchHH
Q psy3787 112 PCELSSLFHLKSLFLGGNPIKTVRNDI 138 (263)
Q Consensus 112 ~~~~~~l~~L~~L~l~~n~l~~~~~~~ 138 (263)
...+...++|+.|++++|.+..+..+.
T Consensus 93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~ 119 (167)
T d1pgva_ 93 LRSTLVTQSIVEFKADNQRQSVLGNQV 119 (167)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HHHHHhCCcCCEEECCCCcCCCccHHH
Confidence 445788889999999999877776543
No 41
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=97.07 E-value=0.00012 Score=53.01 Aligned_cols=108 Identities=16% Similarity=0.110 Sum_probs=74.5
Q ss_pred cCCCCCCcEEEecC-CCCCC--Cc----CCCCCCCCcEEEecCCCCCCCc----hhhhhCCCCccEEEeecCcCc-----
Q psy3787 23 FIDMRSLTELNLSY-NQLTM--LP----VCTDCKNLTHLLLGFNKINNME----NDYFLTLTKLSLLNLKNNKIS----- 86 (263)
Q Consensus 23 ~~~l~~L~~L~l~~-n~l~~--l~----~~~~~~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~~~l~----- 86 (263)
..+.+.|++|++++ +.++. +. .+...++|++|++++|.++... ...+.....++.+++.+|.++
T Consensus 13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~ 92 (166)
T d1io0a_ 13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 92 (166)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence 34668888888887 44652 11 3556788888999988876422 234556778899999988876
Q ss_pred cccccccCCCCcCEEEc--cCCcCCC-----ccccccCCCcccEEEecCCC
Q psy3787 87 EVSSNVGDLINLAILDL--SDNELTD-----VPCELSSLFHLKSLFLGGNP 130 (263)
Q Consensus 87 ~lp~~~~~l~~L~~L~l--~~n~l~~-----l~~~~~~l~~L~~L~l~~n~ 130 (263)
.+...+...++++.+++ ++|.+.. +...+...+.|+.|++..+.
T Consensus 93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 34455667778887665 4566653 44556788899999987664
No 42
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=97.03 E-value=0.00024 Score=51.41 Aligned_cols=41 Identities=20% Similarity=0.108 Sum_probs=19.2
Q ss_pred ccCCCCcCEEEccCCcCCC-----ccccccCCCcccEEEecCCCCC
Q psy3787 92 VGDLINLAILDLSDNELTD-----VPCELSSLFHLKSLFLGGNPIK 132 (263)
Q Consensus 92 ~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~ 132 (263)
+...+.|++|++++|.++. +...+...+.++.+++++|.+.
T Consensus 42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~ 87 (166)
T d1io0a_ 42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 87 (166)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence 3344455555555555442 2222344455555555555433
Done!