RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3787
(263 letters)
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 58.4 bits (141), Expect = 8e-10
Identities = 57/192 (29%), Positives = 100/192 (52%), Gaps = 3/192 (1%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFN 59
+ S+LK LDLS NK+ S PL ++ +L L+LS+N L+ LP + ++ NL +L L N
Sbjct: 138 LKSNLKELDLSDNKIESLPSPLR-NLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN 196
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLF 119
KI+++ + L L+ L L+L NN I E+ S++ +L NL+ L+LS+N+L D+P + +L
Sbjct: 197 KISDLPPEIEL-LSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLS 255
Query: 120 HLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDK 179
+L++L L N I ++ + + R + S + + + +
Sbjct: 256 NLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKA 315
Query: 180 YKLDRTKTLTLC 191
+L L
Sbjct: 316 LELKLNSILLNN 327
Score = 52.7 bits (126), Expect = 6e-08
Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 4/156 (2%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTD--CKNLTHLLLGF 58
L L +LDL+ N+L S+ L ++ +LT L+L N +T +P NL L L
Sbjct: 91 NLLPLPSLDLNLNRLRSNISELL-ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD 149
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSL 118
NKI ++ + L L L+L N +S++ + +L NL LDLS N+++D+P E+ L
Sbjct: 150 NKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELL 208
Query: 119 FHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRL 154
L+ L L N I + + + + ++L
Sbjct: 209 SALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL 244
Score = 27.2 bits (60), Expect = 9.4
Identities = 22/75 (29%), Positives = 31/75 (41%)
Query: 58 FNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSS 117
+ + L L LL+ + S N+ +L+ L LDL+ N L EL
Sbjct: 55 SSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLE 114
Query: 118 LFHLKSLFLGGNPIK 132
L +L SL L N I
Sbjct: 115 LTNLTSLDLDNNNIT 129
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 48.7 bits (116), Expect = 2e-06
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Query: 8 LDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT-MLPVCTDCKNLTHLLLGFNKINNMEN 66
LD+S+N L DM SL L+L+ N+ LP K L +L L N+ +
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVP 492
Query: 67 DYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVPCELSSLFHLKSL 124
+L++L L L NK+S E+ + L LDLS N+L+ +P S + L L
Sbjct: 493 RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQL 552
Query: 125 FLGGN 129
L N
Sbjct: 553 DLSQN 557
Score = 48.3 bits (115), Expect = 2e-06
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 3 SHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLT-MLP-VCTDCKNLTHLLLGFN 59
L+ LDLS N+ S ++P + L +L LS N+L+ +P + CK L L L N
Sbjct: 475 KRLENLDLSRNQF-SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN 533
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNEL 108
+++ F + LS L+L N++S E+ N+G++ +L +++S N L
Sbjct: 534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583
Score = 46.8 bits (111), Expect = 7e-06
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 23/128 (17%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKIN 62
S + ++DLS + + + +NLS NQL+
Sbjct: 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS---------------------G 107
Query: 63 NMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELT-DVPCELSSLFHL 121
+ +D F T + L LNL NN + G + NL LDLS+N L+ ++P ++ S L
Sbjct: 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166
Query: 122 KSLFLGGN 129
K L LGGN
Sbjct: 167 KVLDLGGN 174
Score = 45.6 bits (108), Expect = 1e-05
Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT--MLPVCTDCKNLTHLLLGFN 59
L +L+ L L NKL P ++ L L+LS N L+ + + +NL L L N
Sbjct: 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVPCELSS 117
+L +L +L L +NK S E+ N+G NL +LDLS N LT ++P L S
Sbjct: 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378
Query: 118 LFHLKSLFLGGN 129
+L L L N
Sbjct: 379 SGNLFKLILFSN 390
Score = 45.6 bits (108), Expect = 2e-05
Identities = 46/131 (35%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT-MLPV-CTDCKNLTHLLLGFNK 60
S LK LDL N LV ++ SL L L+ NQL +P K+L + LG+N
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223
Query: 61 INNMENDYFLTLTKLSLLNL-KNNKISEVSSNVGDLINLAILDLSDNELTD-VPCELSSL 118
++ LT L+ L+L NN + S++G+L NL L L N+L+ +P + SL
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283
Query: 119 FHLKSLFLGGN 129
L SL L N
Sbjct: 284 QKLISLDLSDN 294
Score = 29.8 bits (67), Expect = 1.9
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRS-LTELNLSYNQLT-MLP--VCTDCKNLTHLLLG 57
L L+ L L NK S +P + + LT L+LS N LT +P +C NL L+L
Sbjct: 331 LPRLQVLQLWSNKF-SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKLILF 388
Query: 58 FNKINNMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELT 109
N + L + L++N S E+ S L + LD+S+N L
Sbjct: 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ 441
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 42.5 bits (101), Expect = 6e-06
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 50 NLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNEL 108
NL L L N++ + + F L L +L+L N ++ +S L +L LDLS N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 41.0 bits (97), Expect = 2e-05
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 28 SLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKI 85
+L L+LS N+LT++P NL L L N + ++ + F L L L+L N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 39.8 bits (94), Expect = 6e-05
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKI 61
+LK+LDLS+N+L F + +L L+LS N LT + + +L L L N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 39.4 bits (93), Expect = 7e-05
Identities = 19/38 (50%), Positives = 22/38 (57%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQL 39
L +LK LDLS N L S S F + SL L+LS N L
Sbjct: 23 LPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 35.6 bits (83), Expect = 0.002
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 74 KLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNPI 131
L L+L NN+++ + L NL +LDLS N LT + P S L L+SL L GN +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 31.4 bits (72), Expect = 0.052
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 97 NLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQD 141
NL LDLS+N LT +P L +LK L L GN + ++ +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSG 46
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 44.3 bits (105), Expect = 3e-05
Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 22/133 (16%)
Query: 3 SHLKTLDLSHNKLVSDSL----PLFIDMRSLTELNLSYNQL------TMLPVCTDCKNLT 52
L+ L L N+L S R L ELNL+ N + + NL
Sbjct: 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE 196
Query: 53 HLLLGFNKINNMENDYFL-----TLTKLSLLNLKNNKISEV------SSNVGDLINLAIL 101
L L N + + E L +L L +LNL +N +++ S+ + I+L L
Sbjct: 197 VLDLNNNGLTD-EGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL 255
Query: 102 DLSDNELTDVPCE 114
LS N++TD +
Sbjct: 256 SLSCNDITDDGAK 268
Score = 35.8 bits (83), Expect = 0.014
Identities = 29/130 (22%), Positives = 43/130 (33%), Gaps = 32/130 (24%)
Query: 1 MLSHLKTLDLSHNKL----VSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLL 56
+L+ LDL++N L S ++SL LNL N LT L
Sbjct: 191 ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLS--- 247
Query: 57 GFNKINNMENDYFLTLTKLSLLNLKNNKI--------SEVSSNVGDLINLAILDLSDNEL 108
L L+L N I +EV + L+ LDL N+
Sbjct: 248 --------------PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLE---LDLRGNKF 290
Query: 109 TDVPCELSSL 118
+ +L +
Sbjct: 291 GEEGAQLLAE 300
Score = 30.8 bits (70), Expect = 0.69
Identities = 34/142 (23%), Positives = 49/142 (34%), Gaps = 30/142 (21%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDM----RSLTELNLSYNQLTMLPVCTDCKNLTHLLLG 57
L L+ L L N L ++ SL EL LS N+ +P LL
Sbjct: 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPR------GLQSLL- 74
Query: 58 FNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLI----NLAILDLSDNELTD--- 110
L L+L +N + V + + +L L L++N L D
Sbjct: 75 ---------QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL 125
Query: 111 --VPCELSSLFH-LKSLFLGGN 129
+ L L L+ L LG N
Sbjct: 126 RLLAKGLKDLPPALEKLVLGRN 147
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 41.0 bits (96), Expect = 4e-04
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 72 LTKLSLLNLKNNKI-SEVSSNVGDLINLAILDLSDNELT-DVPCELSSLFHLKSLFLGGN 129
L L +NL N I + ++G + +L +LDLS N +P L L L+ L L GN
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500
Score = 37.5 bits (87), Expect = 0.005
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 24/107 (22%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L HL++++LS N + + P + SL L+LSYN
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF---------------------- 478
Query: 62 NNMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGD-LINLAILDLSDN 106
N + LT L +LNL N +S V + +G L++ A + +DN
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number
of proteins with diverse functions and cellular
locations. These repeats are usually involved in
protein-protein interactions. Each Leucine Rich Repeat
is composed of a beta-alpha unit. These units form
elongated non-globular structures. Leucine Rich Repeats
are often flanked by cysteine rich domains.
Length = 43
Score = 36.3 bits (85), Expect = 7e-04
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 28 SLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMEN 66
+L L+LS NQ+T LP ++ NL L L NKI ++
Sbjct: 2 NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSP 40
Score = 33.2 bits (77), Expect = 0.007
Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 97 NLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRN 136
NL LDLS+N++TD+P LS+L +L++L L GN I +
Sbjct: 2 NLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLSP 40
Score = 32.8 bits (76), Expect = 0.010
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV 44
+L+TLDLS+N++ LP ++ +L L+LS N++T L
Sbjct: 2 NLETLDLSNNQI--TDLPPLSNLPNLETLDLSGNKITDLSP 40
Score = 31.7 bits (73), Expect = 0.033
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 73 TKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP 112
T L L+L NN+I+++ + +L NL LDLS N++TD+
Sbjct: 1 TNLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLS 39
Score = 30.5 bits (70), Expect = 0.083
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 49 KNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSS 90
NL L L N+I ++ L L L+L NKI+++S
Sbjct: 1 TNLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 35.4 bits (81), Expect = 0.024
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 24/128 (18%)
Query: 3 SHLKTLDLSHNKL--VSDSLP---LFIDM-------------RSLTELNLSYNQLTMLPV 44
S L++LDL HNK+ + ++LP ++ + +T LN+ N LT LP
Sbjct: 262 SALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPE 321
Query: 45 CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLS 104
T L L G N + ++ +L +L++ N+I+ + + + LD+S
Sbjct: 322 -TLPPGLKTLEAGENALTSLPASL---PPELQVLDVSKNQITVLPETLPP--TITTLDVS 375
Query: 105 DNELTDVP 112
N LT++P
Sbjct: 376 RNALTNLP 383
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 29.2 bits (67), Expect = 0.15
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 26 MRSLTELNLSYNQLTMLP 43
+ +L EL+LS NQL+ LP
Sbjct: 1 LPNLRELDLSNNQLSSLP 18
Score = 25.4 bits (57), Expect = 3.3
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 2 LSHLKTLDLSHNKLVS 17
L +L+ LDLS+N+L S
Sbjct: 1 LPNLRELDLSNNQLSS 16
Score = 24.2 bits (54), Expect = 9.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 95 LINLAILDLSDNELTDVP 112
L NL LDLS+N+L+ +P
Sbjct: 1 LPNLRELDLSNNQLSSLP 18
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most
populated) subfamily.
Length = 24
Score = 29.2 bits (67), Expect = 0.15
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 26 MRSLTELNLSYNQLTMLP 43
+ +L EL+LS NQL+ LP
Sbjct: 1 LPNLRELDLSNNQLSSLP 18
Score = 25.4 bits (57), Expect = 3.3
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 2 LSHLKTLDLSHNKLVS 17
L +L+ LDLS+N+L S
Sbjct: 1 LPNLRELDLSNNQLSS 16
Score = 24.2 bits (54), Expect = 9.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 95 LINLAILDLSDNELTDVP 112
L NL LDLS+N+L+ +P
Sbjct: 1 LPNLRELDLSNNQLSSLP 18
>gnl|CDD|214639 smart00364, LRR_BAC, Leucine-rich repeats, bacterial type.
Length = 20
Score = 26.9 bits (61), Expect = 0.95
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 28 SLTELNLSYNQLTMLP 43
SL ELN+S NQLT LP
Sbjct: 3 SLKELNVSNNQLTSLP 18
>gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase
subunit beta/2-polyprenylphenol hydroxylase;
Provisional.
Length = 944
Score = 29.4 bits (66), Expect = 2.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 103 LSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQ 140
+ D + D PCEL L K+ GG P+K ++L
Sbjct: 188 MRDKQCDDKPCELGVLVQGKAEPKGGCPVKIHIPEMLD 225
>gnl|CDD|113849 pfam05094, LEF-9, Late expression factor 9 (LEF-9). Late
expression factor 9 (LEF-9) is one of the primary
components of RNA polymerase produced by baculoviruses.
LEF-9 is homologous to the largest beta-subunit of
prokaryotic DNA-directed RNA polymerase.
Length = 487
Score = 28.6 bits (64), Expect = 4.4
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 54 LLLGFNKINN---MENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTD 110
LLL NK++N + F K + +LK NK + +S + LIN+ + NE TD
Sbjct: 14 LLLDPNKLDNVVFFNCNEFKKFLKNLIADLKKNKCNYFNSLIEQLINVYQENDERNEHTD 73
Query: 111 V 111
+
Sbjct: 74 L 74
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
Length = 1153
Score = 28.3 bits (63), Expect = 5.8
Identities = 39/126 (30%), Positives = 51/126 (40%), Gaps = 22/126 (17%)
Query: 14 KLVSDSLP--LFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNKINNMENDYF 69
++S SL D+ SL EL S L L +C NL L G N +E+
Sbjct: 774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGIN----LESLES 829
Query: 70 LTL-------------TKLSLLNLKNNKISEVSSNVGDLINLAILDLSD-NELTDVPCEL 115
L L T +S LNL I EV + NL+ LD++ N L V +
Sbjct: 830 LDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNI 889
Query: 116 SSLFHL 121
S L HL
Sbjct: 890 SKLKHL 895
>gnl|CDD|201305 pfam00560, LRR_1, Leucine Rich Repeat. CAUTION: This Pfam may not
find all Leucine Rich Repeats in a protein. Leucine Rich
Repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 22
Score = 24.5 bits (54), Expect = 7.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 97 NLAILDLSDNELTDVPCELSSL 118
NL LDLS+N L+ +P L +L
Sbjct: 1 NLEELDLSNNNLSSLPPSLGNL 22
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.390
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,463,293
Number of extensions: 1121542
Number of successful extensions: 904
Number of sequences better than 10.0: 1
Number of HSP's gapped: 842
Number of HSP's successfully gapped: 64
Length of query: 263
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 168
Effective length of database: 6,723,972
Effective search space: 1129627296
Effective search space used: 1129627296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.8 bits)