RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3787
(263 letters)
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 108 bits (271), Expect = 6e-28
Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 4/139 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFN 59
L+ + ++L N L S + F M+ L+ + ++ +T +P +LT L L N
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGN 202
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCELSSL 118
KI ++ L L+ L L N IS V + + +L L L++N+L VP L+
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH 262
Query: 119 FHLKSLFLGGNPIKTVRND 137
+++ ++L N I + ++
Sbjct: 263 KYIQVVYLHNNNISAIGSN 281
Score = 94.3 bits (235), Expect = 7e-23
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 10/145 (6%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
L L+ L LS N+L + ++L EL + N++T + + + LG N
Sbjct: 99 LVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155
Query: 60 KINN--MENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LS 116
+ + +EN F + KLS + + + I+ + + +L L L N++T V L
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLK 213
Query: 117 SLFHLKSLFLGGNPIKTVRNDILQD 141
L +L L L N I V N L +
Sbjct: 214 GLNNLAKLGLSFNSISAVDNGSLAN 238
Score = 93.9 bits (234), Expect = 1e-22
Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 12/141 (8%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
+ L + ++ + + L SLTEL+L N++T + + NL L L FN
Sbjct: 170 MKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP------- 112
I+ ++N L L+L NNK+ +V + D + ++ L +N ++ +
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286
Query: 113 CELSSLFHLKSLFLGGNPIKT 133
+ + L NP++
Sbjct: 287 GYNTKKASYSGVSLFSNPVQY 307
Score = 92.4 bits (230), Expect = 4e-22
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 8/143 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L +L TL L +NK+ S F + L L LS NQL LP K L L + N+I
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM-PKTLQELRVHENEI 133
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVG---DLINLAILDLSDNELTDVPCELSSL 118
+ F L ++ ++ L N + G + L+ + ++D +T +P L
Sbjct: 134 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP---QGL 190
Query: 119 F-HLKSLFLGGNPIKTVRNDILQ 140
L L L GN I V L+
Sbjct: 191 PPSLTELHLDGNKITKVDAASLK 213
Score = 82.4 bits (204), Expect = 2e-18
Identities = 28/144 (19%), Positives = 55/144 (38%), Gaps = 9/144 (6%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNK 60
LDL +NK+ F ++++L L L N+++ + L L L N+
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE---LS 116
+ + L L + N+I++V +V L + +++L N L E
Sbjct: 112 LKELPEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 117 SLFHLKSLFLGGNPIKTVRNDILQ 140
+ L + + I T+ +
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLPP 192
Score = 80.0 bits (198), Expect = 1e-17
Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 13/141 (9%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
+ L L L NK+ + +L +L LS+N ++ + + +L L L
Sbjct: 190 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-------GDLINLAILDLSDNELTDV 111
NK+ + + ++ L NN IS + SN + + + L N +
Sbjct: 250 NKLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308
Query: 112 ---PCELSSLFHLKSLFLGGN 129
P ++ ++ LG
Sbjct: 309 EIQPSTFRCVYVRAAVQLGNY 329
Score = 79.3 bits (196), Expect = 2e-17
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNKI 61
HL+ + S L + +P + L+L N++T + + KNL L+L NKI
Sbjct: 32 HLRVVQCSDLGL--EKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LSSLFH 120
+ + F L KL L L N++ E+ + L L + +NE+T V + L
Sbjct: 89 SKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQ 146
Query: 121 LKSLFLGGNPIKTVR 135
+ + LG NP+K+
Sbjct: 147 MIVVELGTNPLKSSG 161
Score = 62.7 bits (153), Expect = 1e-11
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 13/94 (13%)
Query: 2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--------VCTDCKNLT 52
HL+ L L++NKLV +P D + + + L N ++ + T + +
Sbjct: 239 TPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296
Query: 53 HLLLGFNKIN--NMENDYFLTLTKLSLLNLKNNK 84
+ L N + ++ F + + + L N K
Sbjct: 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
Score = 33.4 bits (77), Expect = 0.050
Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 75 LSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKT 133
L ++ + + +V ++ + A+LDL +N++T++ +L +L +L L N I
Sbjct: 33 LRVVQCSDLGLEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90
Query: 134 VRNDILQDSKR 144
+ +
Sbjct: 91 ISPGAFAPLVK 101
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 106 bits (266), Expect = 7e-27
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
++ LD SHN + P+ LT L L +N LT + L + L +N++
Sbjct: 204 PIAVEELDASHNSINVVRGPVN---VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL 260
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
+ F+ + +L L + NN++ ++ + L +LDLS N L V L
Sbjct: 261 EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRL 320
Query: 122 KSLFLGGNPIKTVRNDILQ 140
++L+L N I T++
Sbjct: 321 ENLYLDHNSIVTLKLSTHH 339
Score = 100 bits (250), Expect = 2e-24
Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 10/160 (6%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGF 58
+ L L L HN L ++ L E++LSYN+L + + L L +
Sbjct: 224 VNVELTILKLQHNNLT--DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSL 118
N++ + N Y + L +L+L +N + V N L L L N + + LS+
Sbjct: 282 NRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTH 338
Query: 119 FHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHC 158
LK+L L N + L+ R ++ D HC
Sbjct: 339 HTLKNLTLSHNDW---DCNSLRALFRNVARPAVDDADQHC 375
Score = 96.7 bits (241), Expect = 2e-23
Identities = 29/143 (20%), Positives = 60/143 (41%), Gaps = 4/143 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
L++ K + ++ + L R + LNL+ Q+ + + L +GFN
Sbjct: 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSS 117
I + F + L++L L+ N +S + + + L L +S+N L + + +
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163
Query: 118 LFHLKSLFLGGNPIKTVRNDILQ 140
L++L L N + V ++
Sbjct: 164 TTSLQNLQLSSNRLTHVDLSLIP 186
Score = 94.3 bits (235), Expect = 2e-22
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 8/142 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
++ L + N + +F ++ LT L L N L+ LP + + LT L + N
Sbjct: 92 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 151
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLF 119
+ +E+D F T L L L +N+++ V + +L ++S N L+ L+
Sbjct: 152 NLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLS----TLAIPI 205
Query: 120 HLKSLFLGGNPIKTVRNDILQD 141
++ L N I VR + +
Sbjct: 206 AVEELDASHNSINVVRGPVNVE 227
Score = 88.2 bits (219), Expect = 2e-20
Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 26/159 (16%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
+ L+ L LS N+L L L SL N+SYN L+ L + + L N I
Sbjct: 164 TTSLQNLQLSSNRLTHVDLSLI---PSLFHANVSYNLLSTLAIPI---AVEELDASHNSI 217
Query: 62 NNMENDYFLTLTKLSL-------------------LNLKNNKISEVSSNV-GDLINLAIL 101
N + + LT L L ++L N++ ++ + + L L
Sbjct: 218 NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277
Query: 102 DLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQ 140
+S+N L + + LK L L N + V + Q
Sbjct: 278 YISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ 316
Score = 63.5 bits (155), Expect = 9e-12
Identities = 15/112 (13%), Positives = 40/112 (35%), Gaps = 2/112 (1%)
Query: 32 LNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSN 91
+++ + N + + + + + ++ LLNL + +I E+ +
Sbjct: 28 IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY 87
Query: 92 V-GDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQD 141
+ L + N + +P ++ L L L N + ++ I +
Sbjct: 88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139
Score = 55.1 bits (133), Expect = 6e-09
Identities = 15/104 (14%), Positives = 44/104 (42%), Gaps = 7/104 (6%)
Query: 45 CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSL-----LNLKNNKISEVSSNV-GDLINL 98
C D + I+ D + ++L + KN+ + ++ + + +
Sbjct: 12 CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71
Query: 99 AILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQD 141
+L+L+D ++ ++ + ++ L++G N I+ + + Q+
Sbjct: 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 104 bits (261), Expect = 7e-27
Identities = 47/133 (35%), Positives = 61/133 (45%), Gaps = 4/133 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L L TL L L LF + +L L L N L LP D NLTHL L N
Sbjct: 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSS 117
+I+++ F L L L L N+++ V + DL L L L N L+ +P E L+
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223
Query: 118 LFHLKSLFLGGNP 130
L L+ L L NP
Sbjct: 224 LRALQYLRLNDNP 236
Score = 98.1 bits (245), Expect = 2e-24
Identities = 39/145 (26%), Positives = 55/145 (37%), Gaps = 5/145 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYN-QLTMLPVCT--DCKNLTHLLLGF 58
+L L L N L F + L +L+LS N QL + T L L L
Sbjct: 55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LS 116
+ + F L L L L++N + + + DL NL L L N ++ VP
Sbjct: 115 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174
Query: 117 SLFHLKSLFLGGNPIKTVRNDILQD 141
L L L L N + V +D
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRD 199
Score = 97.8 bits (244), Expect = 2e-24
Identities = 40/150 (26%), Positives = 61/150 (40%), Gaps = 7/150 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLG 57
L+ L+ LDLS N + S+ F + L L+L L L L +L L
Sbjct: 79 LALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137
Query: 58 FNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-L 115
N + + +D F L L+ L L N+IS V L +L L L N + V
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197
Query: 116 SSLFHLKSLFLGGNPIKTVRNDILQDSKRI 145
L L +L+L N + + + L + +
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRAL 227
Score = 89.7 bits (223), Expect = 2e-21
Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 5/144 (3%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN- 59
+ + + L N++ F R+LT L L N L + L L L N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSS 117
++ +++ F L +L L+L + E+ + L L L L DN L +P +
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 118 LFHLKSLFLGGNPIKTVRNDILQD 141
L +L LFL GN I +V +
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRG 175
Score = 65.0 bits (159), Expect = 2e-12
Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 4/120 (3%)
Query: 25 DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK 84
+ L +PV + L N+I+++ F L++L L +N
Sbjct: 9 YNEPKVTTSCPQQGLQAVPVGIPA-ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV 67
Query: 85 ISEVSSNV-GDLINLAILDLSDNE-LTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQD 141
++ + + L L LDLSDN L V L L +L L ++ + + +
Sbjct: 68 LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127
Score = 36.9 bits (86), Expect = 0.004
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCK 49
L L TL L N L + +R+L L L+ N VC DC+
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW----VC-DCR 242
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 105 bits (263), Expect = 5e-26
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 4/144 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
HL+ L+L+ N + + F ++ +L L L N+L ++P V T NLT L + N
Sbjct: 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSS 117
KI + + F L L L + +N + +S L +L L L LT +P E LS
Sbjct: 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174
Query: 118 LFHLKSLFLGGNPIKTVRNDILQD 141
L L L L I +R+ +
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKR 198
Score = 103 bits (258), Expect = 2e-25
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 4/144 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
L +LK+L++ N LV S F + SL +L L LT +P L L L
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186
Query: 60 KINNMENDYFLTLTKLSLLNL-KNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LSS 117
IN + + F L +L +L + + ++ N +NL L ++ LT VP +
Sbjct: 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246
Query: 118 LFHLKSLFLGGNPIKTVRNDILQD 141
L +L+ L L NPI T+ +L +
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHE 270
Score = 100 bits (252), Expect = 1e-24
Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 4/134 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L LK L++SH + P + +LT L++++ LT +P L L L +N
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCEL-SS 117
I+ +E L +L + L +++ V L L +L++S N+LT + + S
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318
Query: 118 LFHLKSLFLGGNPI 131
+ +L++L L NP+
Sbjct: 319 VGNLETLILDSNPL 332
Score = 100 bits (251), Expect = 2e-24
Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 4/143 (2%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNK 60
+ + LDL N++ + + F L EL L+ N ++ + + NL L L N+
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSSL 118
+ + F L+ L+ L++ NKI + + DL NL L++ DN+L + S L
Sbjct: 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151
Query: 119 FHLKSLFLGGNPIKTVRNDILQD 141
L+ L L + ++ + L
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSH 174
Score = 98.6 bits (246), Expect = 8e-24
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 4/137 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
L +L+TL L N+L L +F + +LT+L++S N++ +L D NL L +G N
Sbjct: 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSS 117
+ + + F L L L L+ ++ + + L L +L L + +
Sbjct: 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR 198
Query: 118 LFHLKSLFLGGNPIKTV 134
L+ LK L + P
Sbjct: 199 LYRLKVLEISHWPYLDT 215
Score = 96.3 bits (240), Expect = 5e-23
Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 4/144 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
L+ L+ L L L S + L L L + + + + L L +
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVP-CELSS 117
+ L L+ L++ + ++ V L+ L L+LS N ++ + L
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270
Query: 118 LFHLKSLFLGGNPIKTVRNDILQD 141
L L+ + L G + V +
Sbjct: 271 LLRLQEIQLVGGQLAVVEPYAFRG 294
Score = 90.5 bits (225), Expect = 5e-21
Identities = 34/148 (22%), Positives = 56/148 (37%), Gaps = 4/148 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTML--PVCTDCKNLTHLLLGFN 59
L L L L H + + F + L L +S+ P C NLT L +
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSS 117
+ + L L LNL N IS + ++ +L+ L + L +L V
Sbjct: 235 NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294
Query: 118 LFHLKSLFLGGNPIKTVRNDILQDSKRI 145
L +L+ L + GN + T+ + +
Sbjct: 295 LNYLRVLNVSGNQLTTLEESVFHSVGNL 322
Score = 65.1 bits (159), Expect = 3e-12
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
L +L+ L+LS+N + + + ++ L E+ L QL ++ L L + N
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKIS 86
++ +E F ++ L L L +N ++
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSNPLA 333
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 103 bits (258), Expect = 5e-26
Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 5/157 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFN 59
L ++ +++ N L + F + L L +S +LT +P + L L L N
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL-PETLNELHLDHN 203
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCELSSL 118
KI +E + L +KL L L +N+I + + L L L L +N+L+ VP L L
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDL 263
Query: 119 FHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLD 155
L+ ++L N I V + + + +
Sbjct: 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300
Score = 90.8 bits (226), Expect = 2e-21
Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 12/137 (8%)
Query: 5 LKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNKIN 62
L L +S KL L +L EL+L +N++ + + L L LG N+I
Sbjct: 174 LNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230
Query: 63 NMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP-------CEL 115
+EN L L L+L NNK+S V + + DL L ++ L N +T V
Sbjct: 231 MIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290
Query: 116 SSLFHLKSLFLGGNPIK 132
+ + L NP+
Sbjct: 291 VKRAYYNGISLFNNPVP 307
Score = 90.1 bits (224), Expect = 3e-21
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 5/141 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L HL L L +NK+ F +R L +L +S N L +P +L L + N+I
Sbjct: 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL-PSSLVELRIHDNRI 135
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVG--DLINLAILDLSDNELTDVPCELSSLF 119
+ F L ++ + + N + G D + L L +S+ +LT +P +L
Sbjct: 136 RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE-- 193
Query: 120 HLKSLFLGGNPIKTVRNDILQ 140
L L L N I+ + + L
Sbjct: 194 TLNELHLDHNKIQAIELEDLL 214
Score = 89.3 bits (222), Expect = 5e-21
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 11/145 (7%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L L+ L +S N LV L SL EL + N++ +P V + +N+ + +G N
Sbjct: 101 LRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157
Query: 60 KINN--MENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LS 116
+ N E F L KL+ L + K++ + ++ L L L N++ + E L
Sbjct: 158 PLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLL 214
Query: 117 SLFHLKSLFLGGNPIKTVRNDILQD 141
L L LG N I+ + N L
Sbjct: 215 RYSKLYRLGLGHNQIRMIENGSLSF 239
Score = 79.3 bits (196), Expect = 2e-17
Identities = 29/141 (20%), Positives = 50/141 (35%), Gaps = 13/141 (9%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
+ L L L HNK+ + L + L L L +NQ+ M+ + L L L
Sbjct: 191 LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-------GDLINLAILDLSDNELTDV 111
NK++ + L L ++ L N I++V N + L +N +
Sbjct: 251 NKLSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309
Query: 112 ---PCELSSLFHLKSLFLGGN 129
P + ++ G
Sbjct: 310 EVQPATFRCVTDRLAIQFGNY 330
Score = 78.1 bits (193), Expect = 6e-17
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 8/134 (5%)
Query: 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKI 61
HL+ + S L ++P I T L+L N ++ L ++L L+L NKI
Sbjct: 34 HLRVVQCSDLGL--KAVPKEIS-PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LSSLFH 120
+ + F L KL L + N + E+ N+ +L L + DN + VP S L +
Sbjct: 91 SKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRN 148
Query: 121 LKSLFLGGNPIKTV 134
+ + +GGNP++
Sbjct: 149 MNCIEMGGNPLENS 162
Score = 78.1 bits (193), Expect = 6e-17
Identities = 27/143 (18%), Positives = 57/143 (39%), Gaps = 8/143 (5%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNK 60
LDL +N + F ++ L L L N+++ + + L L + N
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCELSSLF 119
+ + + +L + L + +N+I +V V L N+ +++ N L + E +
Sbjct: 114 LVEIPPNLPSSLVE---LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170
Query: 120 HLK--SLFLGGNPIKTVRNDILQ 140
LK L + + + D+ +
Sbjct: 171 GLKLNYLRISEAKLTGIPKDLPE 193
Score = 60.4 bits (147), Expect = 7e-11
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 13/94 (13%)
Query: 2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCTDC--------KNLT 52
L L+ L L +NKL +P D++ L + L N +T + V C
Sbjct: 240 LPTLRELHLDNNKL--SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297
Query: 53 HLLLGFNKI--NNMENDYFLTLTKLSLLNLKNNK 84
+ L N + ++ F +T + N K
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
Score = 50.0 bits (120), Expect = 2e-07
Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 23/114 (20%)
Query: 28 SLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISE 87
L + S L +P + T L L N I+ + D F L L L L NNKIS+
Sbjct: 34 HLRVVQCSDLGLKAVPKEIS-PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92
Query: 88 VSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQD 141
+ S L L+ L++ N + + ++
Sbjct: 93 IHEKA----------------------FSPLRKLQKLYISKNHLVEIPPNLPSS 124
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 104 bits (261), Expect = 5e-26
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 5/144 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
L HL+ L LS N + + + F + +L L L N+LT +P L L L N
Sbjct: 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146
Query: 60 KINNMENDYFLTLTKLSLLNL-KNNKISEVSSNV-GDLINLAILDLSDNELTDVPCELSS 117
I ++ + F + L L+L + ++S +S L NL L+L+ L ++P L+
Sbjct: 147 PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTP 205
Query: 118 LFHLKSLFLGGNPIKTVRNDILQD 141
L L L L GN + +R Q
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQG 229
Score = 99.1 bits (247), Expect = 5e-24
Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 5/144 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLG-F 58
L++L TL+L N+L + F+ + L EL L N + +P +L L LG
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LSS 117
+++ + F L+ L LNL + E+ + + LI L LDLS N L+ +
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQG 229
Query: 118 LFHLKSLFLGGNPIKTVRNDILQD 141
L HL+ L++ + I+ + + +
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAFDN 253
Score = 99.1 bits (247), Expect = 5e-24
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 3/133 (2%)
Query: 2 LSHLKTLDLSH-NKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
+ L+ LDL +L S F + +L LNL+ L +P T L L L N
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNH 218
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSSL 118
++ + F L L L + ++I + N +L +L ++L+ N LT +P + + L
Sbjct: 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278
Query: 119 FHLKSLFLGGNPI 131
HL+ + L NP
Sbjct: 279 HHLERIHLHHNPW 291
Score = 91.7 bits (228), Expect = 2e-21
Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 7/149 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLS-YNQLTMLPVCT--DCKNLTHLLLGF 58
LS LK L L +N + S F + SL L+L +L+ + NL +L L
Sbjct: 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LS 116
+ + L KL L+L N +S + L++L L + +++ +
Sbjct: 195 CNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD 252
Query: 117 SLFHLKSLFLGGNPIKTVRNDILQDSKRI 145
+L L + L N + + +D+ +
Sbjct: 253 NLQSLVEINLAHNNLTLLPHDLFTPLHHL 281
Score = 88.7 bits (220), Expect = 2e-20
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 5/137 (3%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNK 60
++ + L+L N++ + F +R L L LS N + + + NL L L N+
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSD-NELTDVPCE-LSS 117
+ + N F+ L+KL L L+NN I + S + +L LDL + L+ +
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183
Query: 118 LFHLKSLFLGGNPIKTV 134
L +L+ L L ++ +
Sbjct: 184 LSNLRYLNLAMCNLREI 200
Score = 75.6 bits (186), Expect = 8e-16
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 3/117 (2%)
Query: 27 RSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKIS 86
+++ L +P N L L N+I ++ + F L L +L L N I
Sbjct: 43 NQFSKVICVRKNLREVPDGIST-NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101
Query: 87 EVSSNV-GDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQD 141
+ L NL L+L DN LT +P L LK L+L NPI+++ +
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 99.1 bits (248), Expect = 5e-26
Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 5/135 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVC-TDCKNLTHLLLGFN 59
L L + +L L + ++ ++L Y +LT L + + L +
Sbjct: 26 LPEKSKLQEIYQELTR--LKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQ 83
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLF 119
++ ++ L + S L +++E+ + VG+L + L ELT + + L
Sbjct: 84 ELTRLKAA-VGELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQLKAAVGELP 142
Query: 120 HLKSLFLGGNPIKTV 134
+ +
Sbjct: 143 DQSKQQQIYQELTDL 157
Score = 97.9 bits (245), Expect = 1e-25
Identities = 22/139 (15%), Positives = 52/139 (37%), Gaps = 5/139 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVC-TDCKNLTHLLLGFN 59
L L + +L L + ++ ++L Y +LT L + + L +
Sbjct: 3 LPEKSKLQEIYQELTR--LKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQ 60
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLF 119
++ ++ L + S L +++ + + VG+L + L ELT++ + L
Sbjct: 61 ELTRLKAA-VGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELP 119
Query: 120 HLKSLFLGGNPIKTVRNDI 138
L + ++ +
Sbjct: 120 EKSKLQEIYQELTQLKAAV 138
Score = 87.5 bits (218), Expect = 1e-21
Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 5/121 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVC-TDCKNLTHLLLGFN 59
L L + +L L + ++ ++L Y +LT L + + L +
Sbjct: 49 LPEKSKLQEIYQELTR--LKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQ 106
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLF 119
++ ++ L + S L +++++ + VG+L + + ELTD+ L
Sbjct: 107 ELTELKAA-VGELPEKSKLQEIYQELTQLKAAVGELPDQSKQQQIYQELTDLKTAFERLG 165
Query: 120 H 120
H
Sbjct: 166 H 166
Score = 79.4 bits (197), Expect = 1e-18
Identities = 18/111 (16%), Positives = 42/111 (37%), Gaps = 2/111 (1%)
Query: 25 DMRSLTELNLSYNQLTMLPVC-TDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNN 83
++ ++L Y +LT L + + L + ++ ++ L + S L
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAA-VGELPEKSKLQEIYQ 60
Query: 84 KISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTV 134
+++ + + VG+L + L ELT + + L L + +
Sbjct: 61 ELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTEL 111
Score = 42.8 bits (102), Expect = 2e-05
Identities = 8/42 (19%), Positives = 14/42 (33%)
Query: 93 GDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTV 134
G+L + L ELT + + L L + +
Sbjct: 1 GELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRL 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 103 bits (258), Expect = 2e-25
Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 5/144 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
L HL+ L L N + + F + SL L L N LT++P L L L N
Sbjct: 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157
Query: 60 KINNMENDYFLTLTKLSLLNL-KNNKISEVSSNV-GDLINLAILDLSDNELTDVPCELSS 117
I ++ + F + L L+L + K+ +S L NL L+L + D+P L+
Sbjct: 158 PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTP 216
Query: 118 LFHLKSLFLGGNPIKTVRNDILQD 141
L L+ L + GN +R
Sbjct: 217 LVGLEELEMSGNHFPEIRPGSFHG 240
Score = 100 bits (250), Expect = 2e-24
Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 5/144 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLG-F 58
L+ L TL+L N L F + L EL L N + +P +L L LG
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LSS 117
K+ + F L L LNL I ++ + + L+ L L++S N ++
Sbjct: 182 KKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHG 240
Query: 118 LFHLKSLFLGGNPIKTVRNDILQD 141
L LK L++ + + + +
Sbjct: 241 LSSLKKLWVMNSQVSLIERNAFDG 264
Score = 100 bits (250), Expect = 2e-24
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Query: 2 LSHLKTLDLSH-NKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
+ L LDL KL S F + +L LNL + +P T L L + N
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH 229
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSSL 118
+ F L+ L L + N+++S + N L +L L+L+ N L+ +P + + L
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289
Query: 119 FHLKSLFLGGNPI 131
+L L L NP
Sbjct: 290 RYLVELHLHHNPW 302
Score = 94.0 bits (234), Expect = 3e-22
Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 7/149 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLS-YNQLTMLPVCT--DCKNLTHLLLGF 58
LS L+ L L +N + S F + SL L+L +L + NL +L LG
Sbjct: 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LS 116
I +M L L L + N E+ L +L L + +++++ +
Sbjct: 206 CNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD 263
Query: 117 SLFHLKSLFLGGNPIKTVRNDILQDSKRI 145
L L L L N + ++ +D+ + +
Sbjct: 264 GLASLVELNLAHNNLSSLPHDLFTPLRYL 292
Score = 88.7 bits (220), Expect = 2e-20
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 5/137 (3%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNK 60
S+ + L+L N + F + L L L N + + V +L L L N
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSD-NELTDVPCE-LSS 117
+ + + F L+KL L L+NN I + S + +L LDL + +L +
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194
Query: 118 LFHLKSLFLGGNPIKTV 134
LF+LK L LG IK +
Sbjct: 195 LFNLKYLNLGMCNIKDM 211
Score = 79.0 bits (195), Expect = 5e-17
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Query: 27 RSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKIS 86
+++ + L+ +P N +L L N I ++ D F L L +L L N I
Sbjct: 54 NQFSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112
Query: 87 EVSSNV-GDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQD 141
++ L +L L+L DN LT +P L L+ L+L NPI+++ +
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR 169
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 103 bits (259), Expect = 2e-25
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
++ LD SHN + P+ LT L L +N LT + L + L +N++
Sbjct: 210 PIAVEELDASHNSINVVRGPVN---VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL 266
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
+ F+ + +L L + NN++ ++ + L +LDLS N L V L
Sbjct: 267 EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRL 326
Query: 122 KSLFLGGNPIKTVRNDILQ 140
++L+L N I T++
Sbjct: 327 ENLYLDHNSIVTLKLSTHH 345
Score = 91.9 bits (228), Expect = 2e-21
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 8/142 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
++ L + N + +F ++ LT L L N L+ LP + + LT L + N
Sbjct: 98 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 157
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLF 119
+ +E+D F T L L L +N+++ V + +L ++S N L+ L+
Sbjct: 158 NLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLS----TLAIPI 211
Query: 120 HLKSLFLGGNPIKTVRNDILQD 141
++ L N I VR + +
Sbjct: 212 AVEELDASHNSINVVRGPVNVE 233
Score = 87.3 bits (216), Expect = 1e-19
Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 26/159 (16%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
+ L+ L LS N+L L L SL N+SYN L+ L + + L N I
Sbjct: 170 TTSLQNLQLSSNRLTHVDLSLI---PSLFHANVSYNLLSTLAIPI---AVEELDASHNSI 223
Query: 62 NNMENDYFLTLTKLSL-------------------LNLKNNKISEVSSNV-GDLINLAIL 101
N + + LT L L ++L N++ ++ + + L L
Sbjct: 224 NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283
Query: 102 DLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQ 140
+S+N L + + LK L L N + V + Q
Sbjct: 284 YISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ 322
Score = 80.4 bits (198), Expect = 2e-17
Identities = 22/144 (15%), Positives = 53/144 (36%), Gaps = 4/144 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
+ + I + + + + + LP + + + L L
Sbjct: 26 DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 85
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCEL-SS 117
+I ++ F + L + N I + +V ++ L +L L N+L+ +P + +
Sbjct: 86 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145
Query: 118 LFHLKSLFLGGNPIKTVRNDILQD 141
L +L + N ++ + +D Q
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQA 169
Score = 62.6 bits (152), Expect = 2e-11
Identities = 19/141 (13%), Positives = 43/141 (30%), Gaps = 9/141 (6%)
Query: 10 LSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT-------DCKNLTHLLLGFNKIN 62
+N ID + + M N + + +
Sbjct: 5 QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64
Query: 63 NMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSSLFH 120
+ + ++ LLNL + +I E+ + + L + N + +P ++
Sbjct: 65 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124
Query: 121 LKSLFLGGNPIKTVRNDILQD 141
L L L N + ++ I +
Sbjct: 125 LTVLVLERNDLSSLPRGIFHN 145
Score = 26.8 bits (59), Expect = 9.9
Identities = 25/142 (17%), Positives = 41/142 (28%), Gaps = 7/142 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
LK L LSHN +SL R++ + C L H L
Sbjct: 344 HHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQH----CKIDYQLEHGLCCKESD 397
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
D L L+ + K + S + ++ L + VP + +
Sbjct: 398 KPYL-DRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEA 456
Query: 122 KSLFLGGNPIKTVRNDILQDSK 143
+ L + I Q+
Sbjct: 457 EVNELRAEVQQLTNEQIQQEQL 478
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 100 bits (250), Expect = 5e-25
Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 5/157 (3%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT---DCKNLTHLLLG 57
K + L++NK+ + L+L N++ + L HL L
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177
Query: 58 FNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSS 117
+N I +++ KL L+L +NK++ + + + L +N+L + L
Sbjct: 178 YNFIYDVKGQVVFA--KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRF 235
Query: 118 LFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRL 154
+L+ L GN + + + +
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272
Score = 94.7 bits (236), Expect = 6e-23
Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 2/143 (1%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
S ++ LDL N++ + + +L LNL YN + + L L L NK
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNK 202
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
+ M + F + ++ ++L+NNK+ + + NL DL N +
Sbjct: 203 LAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261
Query: 121 LKSLFLGGNPIKTVRNDILQDSK 143
+ + +K + ++
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECT 284
Score = 92.4 bits (230), Expect = 4e-22
Identities = 36/139 (25%), Positives = 52/139 (37%), Gaps = 8/139 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
++K LDLS N L S L LNLS N L L L L N +
Sbjct: 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYV 92
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP-CELSSLFH 120
+ + L+ NN IS VS + + L++N++T + +
Sbjct: 93 QELLV-----GPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSR 145
Query: 121 LKSLFLGGNPIKTVRNDIL 139
++ L L N I TV L
Sbjct: 146 VQYLDLKLNEIDTVNFAEL 164
Score = 86.2 bits (214), Expect = 6e-20
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 10/135 (7%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
+ K ++ + L L ++ EL+LS N L+ + L L L N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLF 119
+ + +L+ L L+L NN + E+ ++ L ++N ++ V S
Sbjct: 69 VLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVS--CSRGQ 120
Query: 120 HLKSLFLGGNPIKTV 134
K+++L N I +
Sbjct: 121 GKKNIYLANNKITML 135
Score = 82.7 bits (205), Expect = 1e-18
Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 7/121 (5%)
Query: 22 LFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN 79
+ + ++ + L + N+ L L N ++ + TKL LLN
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64
Query: 80 LKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDIL 139
L +N + E + L L LDL++N + EL +++L N I V
Sbjct: 65 LSSNVLYETLD-LESLSTLRTLDLNNNYVQ----ELLVGPSIETLHAANNNISRVSCSRG 119
Query: 140 Q 140
Q
Sbjct: 120 Q 120
Score = 74.3 bits (183), Expect = 1e-15
Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 4/129 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVC-TDCKNLTHLLLGFNK 60
L+ L+L +N + + + L L+LS N+L + +T + L NK
Sbjct: 168 SDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK 225
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
+ +E L +L+ N + N + ++ + + +
Sbjct: 226 LVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284
Query: 121 LKSLFLGGN 129
+ +L G
Sbjct: 285 VPTLGHYGA 293
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 95.9 bits (239), Expect = 1e-23
Identities = 48/133 (36%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLP-LFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
L L TLDLSHN+L SLP L + +LT L++S+N+LT LP L L L
Sbjct: 76 LPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCELSS 117
N++ + KL L+L NN ++E+ + + + L NL L L +N L +P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Query: 118 LFHLKSLFLGGNP 130
L FL GNP
Sbjct: 194 SHLLPFAFLHGNP 206
Score = 92.1 bits (229), Expect = 3e-22
Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 5/145 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNK 60
+ L L+L +L L + + L L+LS+NQL LP + LT L + FN+
Sbjct: 54 YTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCEL-SSL 118
+ ++ L +L L LK N++ + + L L L++N LT++P L + L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171
Query: 119 FHLKSLFLGGNPIKTVRNDILQDSK 143
+L +L L N + T+
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHL 196
Score = 85.2 bits (211), Expect = 1e-19
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKIN 62
L LS N L + SL + LT+LNL +LT L V L L L N++
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90
Query: 63 NMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCEL-SSLFH 120
++ TL L++L++ N+++ + L L L L NEL +P L +
Sbjct: 91 SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 121 LKSLFLGGNPIKTV 134
L+ L L N + +
Sbjct: 150 LEKLSLANNNLTEL 163
Score = 69.7 bits (171), Expect = 3e-14
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 28 SLTELNLSYNQLTMLPVCTDC-KNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKIS 86
S E+N LT LP D K+ T L L N + + T+L+ LNL +++
Sbjct: 11 SHLEVNCDKRNLTALP--PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68
Query: 87 EVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTV 134
++ + G L L LDLS N+L +P +L L L + N + ++
Sbjct: 69 KLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 98.0 bits (244), Expect = 1e-23
Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 5/136 (3%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT---DCKNLTHLLLG 57
K + L++NK+ + L+L N++ + L HL L
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177
Query: 58 FNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSS 117
+N I +++ KL L+L +NK++ + + + L +N+L + L
Sbjct: 178 YNFIYDVKGQVVFA--KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRF 235
Query: 118 LFHLKSLFLGGNPIKT 133
+L+ L GN
Sbjct: 236 SQNLEHFDLRGNGFHC 251
Score = 90.7 bits (225), Expect = 6e-21
Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 2/143 (1%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
S ++ LDL N++ + + +L LNL YN + + L L L NK
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNK 202
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
+ M + F + ++ ++L+NNK+ + + NL DL N +
Sbjct: 203 LAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261
Query: 121 LKSLFLGGNPIKTVRNDILQDSK 143
+ + +K + ++
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECT 284
Score = 87.6 bits (217), Expect = 6e-20
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 8/134 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
++K LDLS N L S L LNLS N L L L L N +
Sbjct: 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYV 92
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPC-ELSSLFH 120
+ + L+ NN IS VS + + L++N++T + +
Sbjct: 93 QELLV-----GPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSR 145
Query: 121 LKSLFLGGNPIKTV 134
++ L L N I TV
Sbjct: 146 VQYLDLKLNEIDTV 159
Score = 83.0 bits (205), Expect = 3e-18
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 10/135 (7%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
+ K ++ + L L ++ EL+LS N L+ + L L L N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLF 119
+ + +L+ L L+L NN + E+ ++ L ++N ++ V S
Sbjct: 69 VLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVS--CSRGQ 120
Query: 120 HLKSLFLGGNPIKTV 134
K+++L N I +
Sbjct: 121 GKKNIYLANNKITML 135
Score = 78.7 bits (194), Expect = 6e-17
Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 7/121 (5%)
Query: 22 LFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN 79
+ + ++ + L + N+ L L N ++ + TKL LLN
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64
Query: 80 LKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDIL 139
L +N + E + L L LDL++N + EL +++L N I V
Sbjct: 65 LSSNVLYETLD-LESLSTLRTLDLNNNYVQ----ELLVGPSIETLHAANNNISRVSCSRG 119
Query: 140 Q 140
Q
Sbjct: 120 Q 120
Score = 72.6 bits (178), Expect = 9e-15
Identities = 20/141 (14%), Positives = 44/141 (31%), Gaps = 5/141 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVC-TDCKNLTHLLLGFNK 60
L+ L+L +N + + + L L+LS N+L + +T + L NK
Sbjct: 168 SDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK 225
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LSSLF 119
+ +E L +L+ N + N + ++ + + +
Sbjct: 226 LVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284
Query: 120 HLKSLFLGGNPIKTVRNDILQ 140
G + +
Sbjct: 285 VPTLGHYGAYCCEDLPAPFAD 305
Score = 68.7 bits (168), Expect = 2e-13
Identities = 15/151 (9%), Positives = 44/151 (29%), Gaps = 7/151 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLP-LFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
+L+ DL N +L F + + + + +C T G
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295
Query: 61 INNMENDYF-----LTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCEL 115
++ + L + +LL+ + ++ + + +D + V ++
Sbjct: 296 CEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQV 355
Query: 116 -SSLFHLKSLFLGGNPIKTVRNDILQDSKRI 145
+L + ++ + +
Sbjct: 356 TLRKQAKITLEQKKKALDEQVSNGRRAHAEL 386
Score = 33.3 bits (76), Expect = 0.066
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 85 ISEVSSNVGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQD 141
I E+ N I ++D+ L S +++K L L GNP+ + L
Sbjct: 2 IHEIKQN---GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP 56
Score = 28.7 bits (64), Expect = 2.2
Identities = 15/120 (12%), Positives = 28/120 (23%), Gaps = 4/120 (3%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFN 59
TL+ L L L + L L
Sbjct: 358 RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVK 417
Query: 60 KINNMENDYFLTLTK-LSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSL 118
+ M + + ++ +K ++++ L L +D L L L
Sbjct: 418 RYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKL--NGEADLALASANATLQEL 475
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 95.8 bits (239), Expect = 2e-23
Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 6/154 (3%)
Query: 2 LSHLKTLDLSHNKLVS-DSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
L L+ LD H+ L +F+ +R+L L++S+ + + +L L +
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159
Query: 59 NK-INNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-L 115
N N D F L L+ L+L ++ ++S L +L +L++S N +
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219
Query: 116 SSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHI 149
L L+ L N I T + LQ ++ +
Sbjct: 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253
Score = 94.7 bits (236), Expect = 5e-23
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 7/146 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLLLGF 58
+ LK LDLS N +++ S F+ + L L+ ++ L + V +NL +L +
Sbjct: 77 TTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNK-ISEVSSNV-GDLINLAILDLSDNELTDVPCE-L 115
N F L+ L +L + N ++ +L NL LDLS +L +
Sbjct: 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195
Query: 116 SSLFHLKSLFLGGNPIKTVRNDILQD 141
+SL L+ L + N ++ +
Sbjct: 196 NSLSSLQVLNMSHNNFFSLDTFPYKC 221
Score = 92.8 bits (231), Expect = 2e-22
Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 7/150 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGF 58
L+ L L LS N L SL L+LS+N + + + L HL
Sbjct: 51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 110
Query: 59 NKINNM-ENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDV--PCE 114
+ + M E FL+L L L++ + + + L +L +L ++ N + P
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170
Query: 115 LSSLFHLKSLFLGGNPIKTVRNDILQDSKR 144
+ L +L L L ++ +
Sbjct: 171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200
Score = 92.0 bits (229), Expect = 4e-22
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 6/136 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQ-LTMLP--VCTDCKNLTHLLLGF 58
L +L LD+SH +F + SL L ++ N + T+ +NLT L L
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LS 116
++ + F +L+ L +LN+ +N + + L +L +LD S N + + L
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244
Query: 117 SLF-HLKSLFLGGNPI 131
L L L N
Sbjct: 245 HFPSSLAFLNLTQNDF 260
Score = 88.5 bits (220), Expect = 8e-21
Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 9/147 (6%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDC----KNLTHLLLGF 58
S L+L NKL S +F + LT+L+LS N L+ C+ +L +L L F
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV--GDLINLAILDLSDNELTDVPCE-L 115
N + M ++ FL L +L L+ +++ + ++S L NL LD+S
Sbjct: 88 NGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146
Query: 116 SSLFHLKSLFLGGNP-IKTVRNDILQD 141
+ L L+ L + GN + DI +
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTE 173
Score = 62.7 bits (153), Expect = 9e-12
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
L +L LDLS +L S F + SL LN+S+N L +L L N
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233
Query: 60 KINNMENDYFLTL-TKLSLLNLKNNKIS 86
I + + L+ LNL N +
Sbjct: 234 HIMTSKKQELQHFPSSLAFLNLTQNDFA 261
Score = 28.4 bits (64), Expect = 2.4
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 101 LDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQ 140
+ + LT VP + S L L N ++++ + +
Sbjct: 12 IRCNSKGLTSVPTGIPS--SATRLELESNKLQSLPHGVFD 49
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 93.5 bits (233), Expect = 6e-23
Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 4/141 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L+ L+ L L+ NKL + +F ++++L L ++ N+L LP V NL L L N
Sbjct: 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCEL-SS 117
++ ++ F +LTKL+ L+L N++ + V D L +L L L +N+L VP
Sbjct: 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK 179
Query: 118 LFHLKSLFLGGNPIKTVRNDI 138
L LK+L L N +K V
Sbjct: 180 LTELKTLKLDNNQLKRVPEGA 200
Score = 92.7 bits (231), Expect = 1e-22
Identities = 52/142 (36%), Positives = 72/142 (50%), Gaps = 4/142 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L +L+TL ++ NKL + + +F + +L EL L NQL LP V LT+L LG+N
Sbjct: 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCEL-SS 117
++ ++ F LT L L L NN++ V D L L L L +N+L VP S
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203
Query: 118 LFHLKSLFLGGNPIKTVRNDIL 139
L LK L L NP N I+
Sbjct: 204 LEKLKMLQLQENPWDCTCNGII 225
Score = 86.2 bits (214), Expect = 3e-20
Identities = 46/134 (34%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
Query: 5 LKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKIN 62
K LDL NKL S F + L L L+ N+L LP + + KNL L + NK+
Sbjct: 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98
Query: 63 NMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCEL-SSLFH 120
+ F L L+ L L N++ + V D L L L L NEL +P + L
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 121 LKSLFLGGNPIKTV 134
LK L L N +K V
Sbjct: 159 LKELRLYNNQLKRV 172
Score = 72.7 bits (179), Expect = 3e-15
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 28 SLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKI 85
+L+L N+L+ LP L L L NK+ + F L L L + +NK+
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97
Query: 86 SEVSSNVGD-LINLAILDLSDNELTDVPCEL-SSLFHLKSLFLGGNPIKTV 134
+ V D L+NLA L L N+L +P + SL L L LG N ++++
Sbjct: 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148
Score = 61.9 bits (151), Expect = 1e-11
Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Query: 29 LTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKIS 86
++ S +LT +P + D L L NK++++ + F LTKL LL L +NK+
Sbjct: 18 KNSVDCSSKKLTAIPSNIPAD---TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74
Query: 87 EVSSNV-GDLINLAILDLSDNELTDVPCEL-SSLFHLKSLFLGGNPIKTVRNDI 138
+ + + +L NL L ++DN+L +P + L +L L L N +K++ +
Sbjct: 75 TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV 128
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 96.6 bits (240), Expect = 6e-23
Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 14/144 (9%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
+ LK LD+ +N+L LP L +N NQLTMLP +L L + N++
Sbjct: 119 PASLKHLDVDNNQL--TMLPELP--ALLEYINADNNQLTMLP--ELPTSLEVLSVRNNQL 172
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINL----AILDLSDNELTDVPCELSS 117
+ L L++ N + + + + +N +T +P + S
Sbjct: 173 TFLPE----LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILS 228
Query: 118 LFHLKSLFLGGNPIKTVRNDILQD 141
L ++ L NP+ + + L
Sbjct: 229 LDPTCTIILEDNPLSSRIRESLSQ 252
Score = 83.5 bits (206), Expect = 2e-18
Identities = 27/134 (20%), Positives = 56/134 (41%), Gaps = 15/134 (11%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
+++ L L+ L SLP + +T L ++ N L LP +L +L N+
Sbjct: 57 LINQFSELQLNRLNL--SSLPDNLP-PQITVLEITQNALISLP--ELPASLEYLDACDNR 111
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
++ + L L++ NN+++ + L ++ +N+LT +P
Sbjct: 112 LSTLPE----LPASLKHLDVDNNQLTMLPELPA---LLEYINADNNQLTMLP---ELPTS 161
Query: 121 LKSLFLGGNPIKTV 134
L+ L + N + +
Sbjct: 162 LEVLSVRNNQLTFL 175
Score = 75.0 bits (184), Expect = 1e-15
Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 9/131 (6%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
+ L+ ++ +N+L LP SL L++ NQLT LP + +L L + N +
Sbjct: 139 PALLEYINADNNQLTM--LPELP--TSLEVLSVRNNQLTFLPELPE--SLEALDVSTNLL 192
Query: 62 NNM--ENDYFLTLTKLSL-LNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSL 118
++ + + + N+I+ + N+ L + L DN L+ E S
Sbjct: 193 ESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252
Query: 119 FHLKSLFLGGN 129
+ + G
Sbjct: 253 QTAQPDYHGPR 263
Score = 73.1 bits (179), Expect = 6e-15
Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 13/133 (9%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
+ N+ VS L + +EL L+ L+ LP +T L + N +
Sbjct: 36 WEKQALPGENRNEAVS--LLKECLINQFSELQLNRLNLSSLPD-NLPPQITVLEITQNAL 92
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
++ L L+ +N++S + +L LD+ +N+LT +P + L
Sbjct: 93 ISLPE----LPASLEYLDACDNRLSTLPE---LPASLKHLDVDNNQLTMLPELPAL---L 142
Query: 122 KSLFLGGNPIKTV 134
+ + N + +
Sbjct: 143 EYINADNNQLTML 155
Score = 59.2 bits (143), Expect = 3e-10
Identities = 25/142 (17%), Positives = 52/142 (36%), Gaps = 18/142 (12%)
Query: 1 MLSHLKTLDLS----HNKLVSDSLPLFIDMRSLTELNLSYNQ----LTMLPVCTDCKNLT 52
ML LS +N + F + L +++L C +
Sbjct: 4 MLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL-INQFS 62
Query: 53 HLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP 112
L L ++++ ++ ++++L + N + + +L LD DN L+ +P
Sbjct: 63 ELQLNRLNLSSLPDNLP---PQITVLEITQNALISLPELPA---SLEYLDACDNRLSTLP 116
Query: 113 CELSSLFHLKSLFLGGNPIKTV 134
+S LK L + N + +
Sbjct: 117 ELPAS---LKHLDVDNNQLTML 135
Score = 58.8 bits (142), Expect = 4e-10
Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 8/125 (6%)
Query: 19 SLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNM-ENDYFLTLTKL 75
S+ L I+ N YN ++ + L N + +
Sbjct: 2 SIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQF 61
Query: 76 SLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVR 135
S L L +S + N+ + +L+++ N L +P +S L+ L N + T+
Sbjct: 62 SELQLNRLNLSSLPDNLPP--QITVLEITQNALISLPELPAS---LEYLDACDNRLSTLP 116
Query: 136 NDILQ 140
Sbjct: 117 ELPAS 121
Score = 40.3 bits (94), Expect = 4e-04
Identities = 15/96 (15%), Positives = 25/96 (26%), Gaps = 10/96 (10%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLL--- 56
N++ +P I + + L N L+ T
Sbjct: 205 SEETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPLSSRI-RESLSQQTAQPDYHG 261
Query: 57 ---GFNKINNMENDYFLTLTKLSLLNLKNNKISEVS 89
F+ + +N L NK S+VS
Sbjct: 262 PRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVS 297
Score = 35.7 bits (82), Expect = 0.014
Identities = 18/123 (14%), Positives = 31/123 (25%), Gaps = 6/123 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L T+ L N L S + + T + + +N H L
Sbjct: 229 LDPTCTIILEDNPLSS---RIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVT 285
Query: 62 NNM-ENDYFLTLTKLSLL--NLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSL 118
EN N S + D ++ ++ +LS+
Sbjct: 286 AWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSAS 345
Query: 119 FHL 121
L
Sbjct: 346 AEL 348
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 96.9 bits (241), Expect = 6e-23
Identities = 25/152 (16%), Positives = 55/152 (36%), Gaps = 9/152 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
++ + +N L + M L L+ +N++ L LT L L +N+
Sbjct: 547 GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQ 606
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEV--SSNVGDLINLAILDLSDNELTDVPCELSS- 117
I + D+ ++ L +NK+ + N + + +D S N++ +S
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666
Query: 118 -----LFHLKSLFLGGNPIKTVRNDILQDSKR 144
+ ++ L N I+ ++
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSP 698
Score = 89.9 bits (223), Expect = 1e-20
Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 17/156 (10%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP---------VCTDCKNLT 52
+ T+ LS+N++ LF ++ + LS N +T +P + LT
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731
Query: 53 HLLLGFNKINNM-ENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNE---- 107
+ L FNK+ ++ ++ TL LS +++ N S + + L +
Sbjct: 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEG 791
Query: 108 ---LTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQ 140
L P +++ L L +G N I+ V +
Sbjct: 792 NRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTP 827
Score = 85.7 bits (212), Expect = 4e-19
Identities = 26/150 (17%), Positives = 57/150 (38%), Gaps = 14/150 (9%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTD-----------CKN 50
L L ++L + ++ D+ L LN++ N+
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549
Query: 51 LTHLLLGFNKINNM-ENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELT 109
+ +G+N + + + KL LL+ +NK+ + + G + L L L N++
Sbjct: 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQIE 608
Query: 110 DVPCEL-SSLFHLKSLFLGGNPIKTVRNDI 138
++P + + ++ L N +K + N
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKLKYIPNIF 638
Score = 80.7 bits (199), Expect = 2e-17
Identities = 27/176 (15%), Positives = 64/176 (36%), Gaps = 33/176 (18%)
Query: 2 LSHLKTLDLSHNKLVSDSLPL-------------------FIDMRSLTELNLS-YNQLTM 41
L+ L+ + +++ D++ + + +++ LT++ L +T
Sbjct: 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ 506
Query: 42 LPVC-TDCKNLTHLLLGFNKINNMENDY---------FLTLTKLSLLNLKNNKISEVSSN 91
LP D L L + N+ + T K+ + + N + E ++
Sbjct: 507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566
Query: 92 V--GDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRI 145
++ L +LD N++ + + L L L N I+ + D + ++
Sbjct: 567 ASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQV 621
Score = 77.2 bits (190), Expect = 3e-16
Identities = 32/152 (21%), Positives = 53/152 (34%), Gaps = 11/152 (7%)
Query: 2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCT-DCKNLTHL----- 54
L T+DL NKL S S + L+ +++SYN + P + L
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ 786
Query: 55 -LLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPC 113
N+I T L L + +N I +V + L ILD++DN +
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNISIDV 844
Query: 114 -ELSSLFHLKSLFLGGNPIKTVRNDILQDSKR 144
+ L + + +R +R
Sbjct: 845 TSVCPYIEAGMYVLLYDKTQDIRGCDALGIER 876
Score = 67.6 bits (165), Expect = 5e-13
Identities = 18/143 (12%), Positives = 44/143 (30%), Gaps = 11/143 (7%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTH---LLLGF 58
+ L L+ + L L+ + T+ + LT
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKH 381
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSD-------NELTDV 111
+ + + +L+L +L + I+ + + + + L D N +T +
Sbjct: 382 RIRMHYKKMFLDYDQRLNLSDLLQDAINRN-PEMKPIKKDSRISLKDTQIGNLTNRITFI 440
Query: 112 PCELSSLFHLKSLFLGGNPIKTV 134
+ L L+ ++ +P
Sbjct: 441 SKAIQRLTKLQIIYFANSPFTYD 463
Score = 65.7 bits (160), Expect = 2e-12
Identities = 17/139 (12%), Positives = 40/139 (28%), Gaps = 10/139 (7%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQ---------LTMLPVCTDCKNLT 52
L+ LK L + + + ++ L L
Sbjct: 346 LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQ 405
Query: 53 HLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP 112
+ ++ ++ D ++L + NL N+I+ +S + L L I+ +++ T
Sbjct: 406 DAINRNPEMKPIKKDSRISLKDTQIGNL-TNRITFISKAIQRLTKLQIIYFANSPFTYDN 464
Query: 113 CELSSLFHLKSLFLGGNPI 131
+
Sbjct: 465 IAVDWEDANSDYAKQYENE 483
Score = 63.0 bits (153), Expect = 2e-11
Identities = 18/173 (10%), Positives = 47/173 (27%), Gaps = 42/173 (24%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFI----------------------------DMRSLTEL 32
L DL + + + I + L +
Sbjct: 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQII 453
Query: 33 NLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK-NNKISEVSSN 91
+ + T + + + K E + L L+ + L ++++
Sbjct: 454 YFANSPFTYDNIAV---DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF 510
Query: 92 VGDLINLAILDLSDNELTDVPC----------ELSSLFHLKSLFLGGNPIKTV 134
+ DL L L+++ N + + ++ ++G N ++
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563
Score = 38.3 bits (89), Expect = 0.002
Identities = 19/152 (12%), Positives = 45/152 (29%), Gaps = 11/152 (7%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
+ L + + ++ ++ EL++ +Q + + +T L L
Sbjct: 277 IWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGV--DLDNNGRVTGLSLAGFG 334
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSS---------NVGDLINLAILDLSDNELTDV 111
D LT+L +L+ + + ++ + I D
Sbjct: 335 AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDY 394
Query: 112 PCELSSLFHLKSLFLGGNPIKTVRNDILQDSK 143
L+ L+ +K ++ D K
Sbjct: 395 DQRLNLSDLLQDAINRNPEMKPIKKDSRISLK 426
Score = 37.5 bits (87), Expect = 0.004
Identities = 8/46 (17%), Positives = 16/46 (34%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT 46
+ L LD++ N +S + L Y++ + C
Sbjct: 825 LTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 93.8 bits (233), Expect = 2e-22
Identities = 44/146 (30%), Positives = 64/146 (43%), Gaps = 8/146 (5%)
Query: 3 SHLKTLDLSHNKLVS-DSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
S+ LDLSHN L + + +L L LS+N L + NL +L L N
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVP----CE 114
++ ++ F L L +L L NN I V N D+ L L LS N+++ P +
Sbjct: 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158
Query: 115 LSSLFHLKSLFLGGNPIKTVRNDILQ 140
+ L L L L N +K + LQ
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLTDLQ 184
Score = 91.8 bits (228), Expect = 1e-21
Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L++L +L LSHN L S F+ + +L L+LS N L L + +D + L LLL N
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVS----SNVGDLINLAILDLSDNELTDVPCE- 114
I ++ + F + +L L L N+IS + L L +LDLS N+L +P
Sbjct: 123 HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182
Query: 115 ---LSSLFHLKSLFLGGNPI 131
L + L+L NP+
Sbjct: 183 LQKLPAWVKN-GLYLHNNPL 201
Score = 78.7 bits (194), Expect = 4e-17
Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 8/141 (5%)
Query: 6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDC---KNLTHLLLGFNKIN 62
L S +L ++P + L+LS+N L+ L NL LLL N +N
Sbjct: 21 NILSCSKQQL--PNVPQSLP-SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN 77
Query: 63 NMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSSLFH 120
+ ++ F+ + L L+L +N + + + DL L +L L +N + V +
Sbjct: 78 FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ 137
Query: 121 LKSLFLGGNPIKTVRNDILQD 141
L+ L+L N I ++++D
Sbjct: 138 LQKLYLSQNQISRFPVELIKD 158
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 95.3 bits (237), Expect = 2e-22
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 7/159 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
S ++ LDLSH + S + +F ++ L LNL+YN++ + NL L L +N
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCELSSL 118
+ + + F L K++ ++L+ N I+ + L L LDL DN LT + +
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT----IHFI 380
Query: 119 FHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYH 157
+ +FL GN + T+ L + +S + LD
Sbjct: 381 PSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDIL 419
Score = 91.4 bits (227), Expect = 4e-21
Identities = 39/147 (26%), Positives = 57/147 (38%), Gaps = 8/147 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTML---PVCTDCKNLTHLLLGF 58
L+ + L LS N + + + F + L L L + + NL L LG
Sbjct: 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVG---DLINLAILDLSDNELTDVPCE- 114
+KI + D F L L L L +S+ G +L L LDLS N++ +
Sbjct: 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142
Query: 115 -LSSLFHLKSLFLGGNPIKTVRNDILQ 140
L LKS+ N I V L+
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELE 169
Score = 82.2 bits (203), Expect = 5e-18
Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 11/146 (7%)
Query: 5 LKTLDLSHNKLVS-DSLPLFIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLLLGFNK 60
+ LS N+L + D L + + L L L+ N+ + ++ +L L LG N
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462
Query: 61 INNMEN-----DYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE 114
+ D F L+ L +L L +N ++ + V L L L L+ N LT +
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS-H 521
Query: 115 LSSLFHLKSLFLGGNPIKTVRNDILQ 140
+L+ L + N + D+
Sbjct: 522 NDLPANLEILDISRNQLLAPNPDVFV 547
Score = 80.6 bits (199), Expect = 2e-17
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 11/138 (7%)
Query: 2 LSHLKTLDLSHNKLVSDSLP-LFIDMRSLTELNLSYNQLTMLPVC-------TDCKNLTH 53
+ HL+ L L+ N+ S S + SL +L L N L + +L
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484
Query: 54 LLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPC 113
L L N +N++ F LT L L+L +N+++ +S N NL ILD+S N+L
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND-LPANLEILDISRNQLLAPN- 542
Query: 114 ELSSLFHLKSLFLGGNPI 131
L L + N
Sbjct: 543 -PDVFVSLSVLDITHNKF 559
Score = 77.9 bits (192), Expect = 2e-16
Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 21/159 (13%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
L +L+ L+LS+N L F + + ++L N + ++ T + L L L N
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN 372
Query: 60 KIN-----------NMENDYFLTLTKLSL----LNLKNNKISEVSSNV--GDLINLAILD 102
+ + + +TL K++L ++L N++ + + +L IL
Sbjct: 373 ALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI 432
Query: 103 LSDNELTDVPCE--LSSLFHLKSLFLGGNPIKTVRNDIL 139
L+ N + + S L+ LFLG N ++ L
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471
Score = 77.9 bits (192), Expect = 2e-16
Identities = 33/170 (19%), Positives = 59/170 (34%), Gaps = 15/170 (8%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV----CTDCKNLTHLLLG 57
L +L+ LDL +K+ F + L EL L + L+ + + K LT L L
Sbjct: 72 LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131
Query: 58 FNKINNME-NDYFLTLTKLSLLNLKNNKISEVSSNVGD---LINLAILDLSDNELTDVP- 112
N+I ++ + F L L ++ +N+I V + + L+ L+ N L
Sbjct: 132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191
Query: 113 ------CELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDY 156
L+ L + GN ++ +
Sbjct: 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241
Score = 77.2 bits (190), Expect = 3e-16
Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 16/150 (10%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
L L+TLDL N L + + S+ ++ LS N+L LP + L N+
Sbjct: 360 FLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLVTLP--KINLTANLIHLSENR 412
Query: 61 INNMENDYFLT-LTKLSLLNLKNNKISEVSSNV--GDLINLAILDLSDNELTDVPCE--- 114
+ N++ YFL + L +L L N+ S S + + +L L L +N L
Sbjct: 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472
Query: 115 ---LSSLFHLKSLFLGGNPIKTVRNDILQD 141
L HL+ L+L N + ++ +
Sbjct: 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502
Score = 74.1 bits (182), Expect = 3e-15
Identities = 31/168 (18%), Positives = 63/168 (37%), Gaps = 24/168 (14%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLF------IDMRSLTELNLSYNQLTMLPVCTDC------- 48
L L+ N L S + L L++S N T+
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232
Query: 49 -------KNLTHLLLGFNKINNMENDYFLTLTKLSL--LNLKNNKISEVSSNV-GDLINL 98
++ GF+ I + + + F L + S+ L+L + + ++S V L +L
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDL 292
Query: 99 AILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQDSKRI 145
+L+L+ N++ + E L +L+ L L N + + + ++
Sbjct: 293 KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340
Score = 64.4 bits (157), Expect = 5e-12
Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
LSHL+ L L+HN L S +F + +L L+L+ N+LT+L NL L + N++
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQL 538
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
D F LS+L++ +NK + ++ ++ + + ++ +
Sbjct: 539 LAPNPDVF---VSLSVLDITHNKFIC------ECELSTFINWLNHTNVTIAGPPADIYCV 589
Query: 122 KSLFLGGNPIKTVRNDILQDSKRIISHI 149
G + ++ + + + + S
Sbjct: 590 YPDSFSGVSLFSLSTEGCDEEEVLKSLK 617
Score = 51.7 bits (124), Expect = 8e-08
Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 4/121 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ L+ L L+ N+L L +L L++S NQL +L+ L + NK
Sbjct: 503 LTALRGLSLNSNRLTV--LSHNDLPANLEILDISRNQLLAPNPDV-FVSLSVLDITHNKF 559
Query: 62 N-NMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
E F+ + + + +++ LS + S F
Sbjct: 560 ICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFS 619
Query: 121 L 121
L
Sbjct: 620 L 620
Score = 28.2 bits (63), Expect = 3.1
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 100 ILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQD 141
I LT VP L++ + L L N I+TV
Sbjct: 8 IAFYRFCNLTQVPQVLNTT---ERLLLSFNYIRTVTASSFPF 46
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 92.0 bits (229), Expect = 2e-22
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 8/137 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLLLGF 58
LS L+ L L S +++L ELN+++N + ++ NL HL L
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 59 NKINNMENDYFLTLTKLSL----LNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE 114
NKI ++ L ++ L L+L N ++ + I L L L N+L VP
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDG 218
Query: 115 -LSSLFHLKSLFLGGNP 130
L L+ ++L NP
Sbjct: 219 IFDRLTSLQKIWLHTNP 235
Score = 90.4 bits (225), Expect = 9e-22
Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 5/143 (3%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNK 60
K LDLS N L F L L+LS ++ + +L+ L+L N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE--LSS 117
I ++ F L+ L L ++ + + G L L L+++ N + S+
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 118 LFHLKSLFLGGNPIKTVRNDILQ 140
L +L+ L L N I+++ L+
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLR 170
Score = 87.3 bits (217), Expect = 1e-20
Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 15/152 (9%)
Query: 2 LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLG 57
L+ LDLS ++ ++ + + L+ L L+ N + L + +L L+
Sbjct: 51 FPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108
Query: 58 FNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVG---DLINLAILDLSDNELTDVPCE 114
+ ++EN L L LN+ +N I +L NL LDLS N++ + C
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYCT 167
Query: 115 -LSSLFHLK----SLFLGGNPIKTVRNDILQD 141
L L + SL L NP+ ++ ++
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199
Score = 87.3 bits (217), Expect = 1e-20
Identities = 45/148 (30%), Positives = 64/148 (43%), Gaps = 8/148 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
LSHL TL L+ N + S +L F + SL +L L L K L L + N
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 60 KINNME-NDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAI----LDLSDNELTDVPC 113
I + + +YF LT L L+L +NKI + L + + LDLS N + +
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194
Query: 114 ELSSLFHLKSLFLGGNPIKTVRNDILQD 141
LK L L N +K+V + I
Sbjct: 195 GAFKEIRLKELALDTNQLKSVPDGIFDR 222
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 94.8 bits (236), Expect = 3e-22
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 5/143 (3%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNK 60
K LDLS N L F L L+LS ++ + +L+ L+L N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDV--PCELSS 117
I ++ F L+ L L ++ + + G L L L+++ N + P S+
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 118 LFHLKSLFLGGNPIKTVRNDILQ 140
L +L+ L L N I+++ L+
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLR 170
Score = 92.1 bits (229), Expect = 2e-21
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Query: 2 LSHLKTLDLSHNKLVS-DSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
L L+ LD H+ L +F+ +R+L L++S+ + + +L L +
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454
Query: 59 NKI-NNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-L 115
N N D F L L+ L+L ++ ++S L +L +L+++ N+L VP
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514
Query: 116 SSLFHLKSLFLGGNPI 131
L L+ ++L NP
Sbjct: 515 DRLTSLQKIWLHTNPW 530
Score = 90.9 bits (226), Expect = 5e-21
Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 9/149 (6%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L+ LDLS ++ + + + L+ L L+ N + L + +L L+
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVS--SNVGDLINLAILDLSDNELTDVPCE-LS 116
+ ++EN L L LN+ +N I +L NL LDLS N++ + C L
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170
Query: 117 SLFHLK----SLFLGGNPIKTVRNDILQD 141
L + SL L NP+ ++ ++
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199
Score = 88.2 bits (219), Expect = 4e-20
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 7/145 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLLLGF 58
+ LK LDLS N +++ S F+ + L L+ ++ L + V +NL +L +
Sbjct: 372 TTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV--GDLINLAILDLSDNELTDVPCE-L 115
N F L+ L +L + N E +L NL LDLS +L +
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490
Query: 116 SSLFHLKSLFLGGNPIKTVRNDILQ 140
+SL L+ L + N +K+V + I
Sbjct: 491 NSLSSLQVLNMASNQLKSVPDGIFD 515
Score = 86.3 bits (214), Expect = 2e-19
Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 7/147 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGF 58
L L+ LDLS N L SL L+LS+N + + + L HL
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 405
Query: 59 NKINNMENDY-FLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDV--PCE 114
+ + M FL+L L L++ + + + L +L +L ++ N + P
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
Query: 115 LSSLFHLKSLFLGGNPIKTVRNDILQD 141
+ L +L L L ++ +
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNS 492
Score = 85.9 bits (213), Expect = 3e-19
Identities = 41/140 (29%), Positives = 57/140 (40%), Gaps = 8/140 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
LSHL TL L+ N + S +L F + SL +L L L K L L + N
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 60 KINNME-NDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAI----LDLSDNELTDVPC 113
I + + +YF LT L L+L +NKI + L + + LDLS N + +
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194
Query: 114 ELSSLFHLKSLFLGGNPIKT 133
L L L N
Sbjct: 195 GAFKEIRLHKLTLRNNFDSL 214
Score = 84.4 bits (209), Expect = 8e-19
Identities = 31/144 (21%), Positives = 51/144 (35%), Gaps = 7/144 (4%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
+ L+L + K + ++SL L + N+ D +L L L N
Sbjct: 302 YNFGWQHLELVNCKFGQFP---TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358
Query: 61 INNME--NDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP--CELS 116
++ + T L L+L N + +SSN L L LD + L +
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418
Query: 117 SLFHLKSLFLGGNPIKTVRNDILQ 140
SL +L L + + N I
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFN 442
Score = 80.5 bits (199), Expect = 2e-17
Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 9/144 (6%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT---DCKNLTHLLLGF 58
LS L+ L L S +++L ELN+++N + + + NL HL L
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 59 NKINNMENDYFLTLTKLSL----LNLKNNKISEVSSNVGDLINLAILDLSDNELT--DVP 112
NKI ++ L ++ L L+L N ++ + I L L L +N + +
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218
Query: 113 CELSSLFHLKSLFLGGNPIKTVRN 136
+ L L+ L + N
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGN 242
Score = 68.6 bits (168), Expect = 2e-13
Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 8/141 (5%)
Query: 4 HLKTLDLSHNKLVSDSLP-LFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKIN 62
++ L++ D + LF + +++ +L + + + HL L K
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317
Query: 63 NMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDV---PCELSSLF 119
L L L L +NK S V L +L LDLS N L+
Sbjct: 318 QFP---TLKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTT 373
Query: 120 HLKSLFLGGNPIKTVRNDILQ 140
LK L L N + T+ ++ L
Sbjct: 374 SLKYLDLSFNGVITMSSNFLG 394
Score = 65.1 bits (159), Expect = 3e-12
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLP-LFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
LS L+ L ++ N + LP +F ++R+LT L+LS QL L +L L +
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKIS 86
N++ ++ + F LT L + L N
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
Score = 50.5 bits (121), Expect = 2e-07
Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 16/164 (9%)
Query: 5 LKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHL------LLGF 58
+LDLS N + F ++ L +L L N ++ + T + L L L F
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-------LINLAILDLSDNELTDV 111
N+E L L L ++ +++ + + D L N++ L + V
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297
Query: 112 PCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRI-ISHIKTSRL 154
+ S F + L L L+ KR+ + K
Sbjct: 298 K-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340
Score = 26.6 bits (59), Expect = 9.9
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 102 DLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQD 141
+ +P L K+L L NP++ + +
Sbjct: 13 QCMELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFS 50
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 92.2 bits (230), Expect = 5e-22
Identities = 34/133 (25%), Positives = 69/133 (51%), Gaps = 5/133 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ + +L+L N +SD PL +M L L ++ +++ + + +L L L +N+I
Sbjct: 131 LTKMYSLNLGANHNLSDLSPLS-NMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQI 189
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
++ +LT L N+I+++ + V ++ L L + +N++TD+ L++L L
Sbjct: 190 EDISP--LASLTSLHYFTAYVNQITDI-TPVANMTRLNSLKIGNNKITDLS-PLANLSQL 245
Query: 122 KSLFLGGNPIKTV 134
L +G N I +
Sbjct: 246 TWLEIGTNQISDI 258
Score = 91.4 bits (228), Expect = 1e-21
Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 6/136 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ L N++ + +M L L + N++T L + LT L +G N+I
Sbjct: 198 LTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQI 255
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDV-PCELSSLFH 120
+++ LTKL +LN+ +N+IS++ S + +L L L L++N+L + + L +
Sbjct: 256 SDINA--VKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312
Query: 121 LKSLFLGGNPIKTVRN 136
L +LFL N I +R
Sbjct: 313 LTTLFLSQNHITDIRP 328
Score = 91.1 bits (227), Expect = 2e-21
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 5/133 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L + L ++ K+ S+ + +L LNL+ NQ+T + ++ LT+L +G NKI
Sbjct: 43 LESITKLVVAGEKV--ASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKI 100
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
++ LT L L L + IS++ S + +L + L+L N LS++ L
Sbjct: 101 TDISA--LQNLTNLRELYLNEDNISDI-SPLANLTKMYSLNLGANHNLSDLSPLSNMTGL 157
Query: 122 KSLFLGGNPIKTV 134
L + + +K V
Sbjct: 158 NYLTVTESKVKDV 170
Score = 90.3 bits (225), Expect = 2e-21
Identities = 32/133 (24%), Positives = 68/133 (51%), Gaps = 6/133 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
++ L L ++ +K+ + ++ L L+L+YNQ+ + +L + N+I
Sbjct: 154 MTGLNYLTVTESKV--KDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQI 211
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
++ +T+L+ L + NNKI+++ S + +L L L++ N+++D+ + L L
Sbjct: 212 TDITP--VANMTRLNSLKIGNNKITDL-SPLANLSQLTWLEIGTNQISDIN-AVKDLTKL 267
Query: 122 KSLFLGGNPIKTV 134
K L +G N I +
Sbjct: 268 KMLNVGSNQISDI 280
Score = 89.5 bits (223), Expect = 5e-21
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
++ L +L + +NK+ L ++ LT L + NQ++ + D L L +G N+I
Sbjct: 220 MTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQI 277
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVS-SNVGDLINLAILDLSDNELTDVPCELSSLFH 120
+++ L++L+ L L NN++ +G L NL L LS N +TD+ L+SL
Sbjct: 278 SDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR-PLASLSK 334
Query: 121 LKSLFLGGNPIK 132
+ S IK
Sbjct: 335 MDSADFANQVIK 346
Score = 87.2 bits (217), Expect = 4e-20
Identities = 30/136 (22%), Positives = 63/136 (46%), Gaps = 7/136 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFN-K 60
L L L + NK+ + ++ +L EL L+ + ++ + + + L LG N
Sbjct: 87 LVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHN 144
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
++++ +T L+ L + +K+ +V+ + +L +L L L+ N++ D+ L+SL
Sbjct: 145 LSDLSP--LSNMTGLNYLTVTESKVKDVT-PIANLTDLYSLSLNYNQIEDIS-PLASLTS 200
Query: 121 LKSLFLGGNPIKTVRN 136
L N I +
Sbjct: 201 LHYFTAYVNQITDITP 216
Score = 86.8 bits (216), Expect = 5e-20
Identities = 37/140 (26%), Positives = 73/140 (52%), Gaps = 6/140 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ L +L L++N++ + + SL NQ+T + + L L +G NKI
Sbjct: 176 LTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKI 233
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
++ L++L+ L + N+IS++++ V DL L +L++ N+++D+ L++L L
Sbjct: 234 TDLSP--LANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQISDIS-VLNNLSQL 289
Query: 122 KSLFLGGNPIKTVRNDILQD 141
SLFL N + +++
Sbjct: 290 NSLFLNNNQLGNEDMEVIGG 309
Score = 86.1 bits (214), Expect = 8e-20
Identities = 32/133 (24%), Positives = 66/133 (49%), Gaps = 6/133 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ L + + ++ S+T+L ++ ++ + NL +L L N+I
Sbjct: 21 LAEGIRAVLQKASV--TDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQI 78
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
++ L KL+ L + NKI+++S+ + +L NL L L+++ ++D+ L++L +
Sbjct: 79 TDISP--LSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDNISDIS-PLANLTKM 134
Query: 122 KSLFLGGNPIKTV 134
SL LG N +
Sbjct: 135 YSLNLGANHNLSD 147
Score = 77.2 bits (191), Expect = 1e-16
Identities = 30/132 (22%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Query: 5 LKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNM 64
TL + + P D+ L +T + + +++T L++ K+ ++
Sbjct: 2 AATLATLPAPI-NQIFPD-ADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASI 59
Query: 65 ENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSL 124
+ LT L LNL N+I+++ S + +L+ L L + N++TD+ L +L +L+ L
Sbjct: 60 QG--IEYLTNLEYLNLNGNQITDI-SPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115
Query: 125 FLGGNPIKTVRN 136
+L + I +
Sbjct: 116 YLNEDNISDISP 127
Score = 59.1 bits (144), Expect = 2e-10
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFN 59
L+ LK L++ N++ + + ++ L L L+ NQL + NLT L L N
Sbjct: 264 LTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISE 87
I ++ +L+K+ + N I +
Sbjct: 322 HITDIRP--LASLSKMDSADFANQVIKK 347
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 93.3 bits (232), Expect = 6e-22
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNK 60
S +KT DLS +K+ + +F L +L L+ N++ + +L L L N
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCE-LSSL 118
+ ++++ F L KL +L+L N I + L NL L L N+L VP L
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394
Query: 119 FHLKSLFLGGNP 130
L+ ++L NP
Sbjct: 395 TSLQKIWLHTNP 406
Score = 84.4 bits (209), Expect = 6e-19
Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 8/146 (5%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLLLGFN 59
+H+ +DLS N + + F ++ L L + ++ +L L L +N
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVG---DLINLAILDLSDNELTDVPCE-- 114
+ +E F L L +L L + + L +L +L L DN + +
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 115 LSSLFHLKSLFLGGNPIKTVRNDILQ 140
++ L L N +K++ + L
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLL 175
Score = 81.3 bits (201), Expect = 9e-18
Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 16/154 (10%)
Query: 2 LSHLKTLDLSHNKLVSDSLP------------LFIDMRSLTELNLSYNQLTMLP--VCTD 47
+ +++L LS++ + S ++ + +LS +++ L V +
Sbjct: 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH 297
Query: 48 CKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDN 106
+L L L N+IN ++++ F LT L LNL N + + S + + L L +LDLS N
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357
Query: 107 ELTDVPCEL-SSLFHLKSLFLGGNPIKTVRNDIL 139
+ + + L +LK L L N +K+V + I
Sbjct: 358 HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391
Score = 78.2 bits (193), Expect = 9e-17
Identities = 39/206 (18%), Positives = 70/206 (33%), Gaps = 20/206 (9%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDC----KNLTHLLLG 57
LS L L L +N+ + F + +L L L+ L + + +L L+L
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137
Query: 58 FNKINNMEND-YFLTLTKLSLLNLKNNKISEVSSNVGD-----------LINLAILDLSD 105
N I ++ +FL + + +L+L NK+ + L ++ + D+++
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197
Query: 106 NELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGG 164
L C + +L L GN K D+ I+ K L G
Sbjct: 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA---IAGTKIQSLILSNSYNMGS 254
Query: 165 GMSSQESTSEINIDKYKLDRTKTLTL 190
N L+ + T
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVKTC 280
Score = 77.5 bits (191), Expect = 2e-16
Identities = 35/154 (22%), Positives = 58/154 (37%), Gaps = 12/154 (7%)
Query: 2 LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLG 57
L L+ L + + F + SL L L YNQ L NL L L
Sbjct: 53 LQDLQFLKVEQQTP-GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT 111
Query: 58 FNKINNM--ENDYFLTLTKLSLLNLKNNKISEVSSNVGD--LINLAILDLSDNELTDVPC 113
++ ++F LT L +L L++N I ++ + +LDL+ N++ +
Sbjct: 112 QCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171
Query: 114 E-LSSL--FHLKSLFLGGNPIKTVRNDILQDSKR 144
E L + H L L ++ + L K
Sbjct: 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205
Score = 75.6 bits (186), Expect = 8e-16
Identities = 34/158 (21%), Positives = 58/158 (36%), Gaps = 19/158 (12%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTEL-------------NLSYNQLTMLPVCT-- 46
+ + TLDLS N F D + T++ + + T
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270
Query: 47 --DCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDL 103
+ + L +KI + F T L L L N+I+++ N L +L L+L
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330
Query: 104 SDNELTDVPCEL-SSLFHLKSLFLGGNPIKTVRNDILQ 140
S N L + + +L L+ L L N I+ + +
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL 368
Score = 68.6 bits (168), Expect = 2e-13
Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 19/158 (12%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV---------------CT 46
LS + D++ L + S+T L+LS N
Sbjct: 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246
Query: 47 DCKNLTHLLLGFNKINNMENDYF--LTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDL 103
G + +N F L + + +L +KI + +V +L L L
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL 306
Query: 104 SDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQ 140
+ NE+ + L HL L L N + ++ + + +
Sbjct: 307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE 344
Score = 61.3 bits (149), Expect = 4e-11
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L+HL L+LS N L S +F ++ L L+LSYN + L NL L L N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 60 KINNMENDYFLTLTKLSLLNLKNN 83
++ ++ + F LT L + L N
Sbjct: 382 QLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 33.6 bits (77), Expect = 0.058
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQL 39
L +LK L L N+L S +F + SL ++ L N
Sbjct: 370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 93.5 bits (233), Expect = 7e-22
Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 6/150 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
S L +LD+ N + L + L LNL +N+L+ L C NLT L L N
Sbjct: 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCELSSL 118
I ++N+ F+ L L+L +N +S L NL L LS+N++ + E +
Sbjct: 108 SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167
Query: 119 FH---LKSLFLGGNPIKTVRNDILQDSKRI 145
F LK L L N IK R+
Sbjct: 168 FANSSLKKLELSSNQIKEFSPGCFHAIGRL 197
Score = 92.4 bits (230), Expect = 2e-21
Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 4/143 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
+++ L+L+HN+L F LT L++ +N ++ L +C L L L N
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSS 117
+++ + + F T L+ L+L +N I ++ +N NL LDLS N L+
Sbjct: 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143
Query: 118 LFHLKSLFLGGNPIKTVRNDILQ 140
L +L+ L L N I+ ++++ L
Sbjct: 144 LENLQELLLSNNKIQALKSEELD 166
Score = 92.0 bits (229), Expect = 3e-21
Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 14/158 (8%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTD----CKNLTHLLLG 57
L ++ + LS+NK + + F + SL L L L + +NLT L L
Sbjct: 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488
Query: 58 FNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV---------GDLINLAILDLSDNEL 108
N I N+ +D L KL +L+L++N ++ + + L +L IL+L N
Sbjct: 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548
Query: 109 TDV-PCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRI 145
++ LF LK + LG N + T+ + + +
Sbjct: 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586
Score = 91.6 bits (228), Expect = 3e-21
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L LK L+L HN+L S F +LTEL+L N + + KNL L L N
Sbjct: 72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSN---VGDLINLAILDLSDNELTDV-PCEL 115
+++ + + L L L L NNKI + S + +L L+LS N++ + P
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191
Query: 116 SSLFHLKSLFLGGNPI 131
++ L LFL +
Sbjct: 192 HAIGRLFGLFLNNVQL 207
Score = 88.9 bits (221), Expect = 3e-20
Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 14/171 (8%)
Query: 2 LSHLKTLDLSHNKL--VSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLG 57
+ L+ L L L V S F +R+LT L+LS N + + + + L L L
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512
Query: 58 FNKINNMENDY--------FLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNEL 108
N + + L+ L +LNL++N E+ V DL L I+DL N L
Sbjct: 513 HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572
Query: 109 TDV-PCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHC 158
+ ++ LKSL L N I +V + + R ++ + + C
Sbjct: 573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623
Score = 87.4 bits (217), Expect = 9e-20
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 7/148 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLLLGF 58
S L L+L+ NK+ F + L L+L N++ +N+ + L +
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVG---DLINLAILDLSDNELTDVPCE- 114
NK + + F + L L L+ + V S+ L NL ILDLS+N + ++ +
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499
Query: 115 LSSLFHLKSLFLGGNPIKTVRNDILQDS 142
L L L+ L L N + +
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGG 527
Score = 87.0 bits (216), Expect = 1e-19
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 11/147 (7%)
Query: 5 LKTLDLSHNKL--VSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNK 60
+ D SH KL V D LP ++T LNL++NQL LP LT L +GFN
Sbjct: 6 HEVADCSHLKLTQVPDDLP-----TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDV-PCELSSL 118
I+ +E + L L +LNL++N++S++S NL L L N + +
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120
Query: 119 FHLKSLFLGGNPIKTVRNDILQDSKRI 145
+L +L L N + + + + +
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENL 147
Score = 80.8 bits (200), Expect = 2e-17
Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 17/156 (10%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLG-- 57
++L LDLS+N L F + L L YN + L + N+ +L L
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306
Query: 58 -------FNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELT 109
+ +++ F L L LN+++N I + SN+ LINL L LS++ +
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366
Query: 110 DVPCELSSLFH-----LKSLFLGGNPIKTVRNDILQ 140
+ L L L N I + +D
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402
Score = 80.0 bits (198), Expect = 3e-17
Identities = 39/151 (25%), Positives = 60/151 (39%), Gaps = 11/151 (7%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP----VCTDCKNLTHLLLG 57
+L TLDLSHN L S L + + +L EL LS N++ L +L L L
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179
Query: 58 FNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV----GDLINLAILDLSDNELTDVPC 113
N+I F + +L L L N ++ + ++ L LS+++L+
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239
Query: 114 ELSS---LFHLKSLFLGGNPIKTVRNDILQD 141
+L L L N + V ND
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 270
Score = 77.7 bits (192), Expect = 2e-16
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 9/149 (6%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
+ +S L F ++ L LN+ N + + + T NL +L L
Sbjct: 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362
Query: 59 NKIN--NMENDYF--LTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDV-- 111
+ + + N+ F L + L +LNL NKIS++ S+ L +L +LDL NE+
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422
Query: 112 PCELSSLFHLKSLFLGGNPIKTVRNDILQ 140
E L ++ ++L N + +
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFA 451
Score = 71.6 bits (176), Expect = 2e-14
Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 28 SLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISE 87
S + S+ +LT +P N+T L L N++ + F ++L+ L++ N IS+
Sbjct: 5 SHEVADCSHLKLTQVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63
Query: 88 VSSNV-GDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQDSKRI 145
+ + L L +L+L NEL+ + + + +L L L N I+ ++N+ K +
Sbjct: 64 LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123
Query: 146 IS 147
I+
Sbjct: 124 IT 125
Score = 66.2 bits (162), Expect = 1e-12
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
LSHL L+L N + +F D+ L ++L N L LP V + +L L L N
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594
Query: 60 KINNMENDYFLT-LTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP 112
I ++E F L+ L+++ N ++ +N ++ + + ++
Sbjct: 595 LITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVN--WINETHTNIPELS 646
Score = 51.5 bits (124), Expect = 1e-07
Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 13/121 (10%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT---DCKNLTHLLLGF 58
L LK +DL N L + +F + SL LNL N +T + +NLT L + F
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618
Query: 59 NKIN-NMENDYFLTLTKLSLLNLKNNKISEVSSNV-----GDLINLAILDLSDNELTDVP 112
N + E+ + ++ +N + I E+SS+ + + D
Sbjct: 619 NPFDCTCESIAWF----VNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSA 674
Query: 113 C 113
Sbjct: 675 H 675
Score = 32.3 bits (74), Expect = 0.16
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 96 INLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQD 141
++ + D S +LT VP +L + ++ L L N ++ +
Sbjct: 4 VSHEVADCSHLKLTQVPDDLPT--NITVLNLTHNQLRRLPAANFTR 47
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 92.8 bits (231), Expect = 1e-21
Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 5/143 (3%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNK 60
S K +DLS N L F + L L+LS ++ + +L++L+L N
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDV--PCELSS 117
I + F LT L L K++ + S G LI L L+++ N + P S+
Sbjct: 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151
Query: 118 LFHLKSLFLGGNPIKTVRNDILQ 140
L +L + L N I+T+ + LQ
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQ 174
Score = 92.0 bits (229), Expect = 2e-21
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 9/151 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
S L+ LDLS ++ + + + L+ L L+ N + + +L +L+
Sbjct: 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVS--SNVGDLINLAILDLSDNELTDVPCE-LS 116
K+ ++E+ L L LN+ +N I + +L NL +DLS N + + L
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174
Query: 117 SLFHLK----SLFLGGNPIKTVRNDILQDSK 143
L SL + NPI +++ Q K
Sbjct: 175 FLRENPQVNLSLDMSLNPIDFIQDQAFQGIK 205
Score = 90.1 bits (224), Expect = 9e-21
Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 5/135 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLLLGF 58
L L LD+S+ D +F+ + SL L ++ N V + NLT L L
Sbjct: 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVP-CELS 116
++ + F TL +L LLN+ +N + + S+ L +L+ LD S N +
Sbjct: 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH 542
Query: 117 SLFHLKSLFLGGNPI 131
L L N +
Sbjct: 543 FPKSLAFFNLTNNSV 557
Score = 87.8 bits (218), Expect = 6e-20
Identities = 32/149 (21%), Positives = 59/149 (39%), Gaps = 7/149 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVC---TDCKNLTHLLLGF 58
+ L+ LDLS N + S F+ + L L+ ++ L + + L +L + +
Sbjct: 375 TNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEV--SSNVGDLINLAILDLSDNELTDVPCE-L 115
+ FL LT L+ L + N + S+ + NL LDLS +L +
Sbjct: 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493
Query: 116 SSLFHLKSLFLGGNPIKTVRNDILQDSKR 144
+L L+ L + N + + +
Sbjct: 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522
Score = 87.0 bits (216), Expect = 1e-19
Identities = 39/163 (23%), Positives = 63/163 (38%), Gaps = 11/163 (6%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
L HL L L+ N + S S F + SL L +L L L L + N
Sbjct: 79 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138
Query: 60 KINNME-NDYFLTLTKLSLLNLKNNKISEVSSNVGDL-----INLAILDLSDNELTDVPC 113
I++ + YF LT L ++L N I ++ N LD+S N + +
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198
Query: 114 ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDY 156
+ L L L GN + +I++ + ++ + RL
Sbjct: 199 QAFQGIKLHELTLRGNFNSS---NIMKTCLQNLAGLHVHRLIL 238
Score = 86.6 bits (215), Expect = 2e-19
Identities = 31/136 (22%), Positives = 48/136 (35%), Gaps = 8/136 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+++ + L+ + L L++ QL P D L L L NK
Sbjct: 284 LANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFP-TLDLPFLKSLTLTMNKG 340
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD---LINLAILDLSDNELTDVPCELSSL 118
+ + L LS L+L N +S +L LDLS N + L
Sbjct: 341 SISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGL 398
Query: 119 FHLKSLFLGGNPIKTV 134
L+ L + +K V
Sbjct: 399 EELQHLDFQHSTLKRV 414
Score = 85.5 bits (212), Expect = 3e-19
Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 7/143 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
++L + +L +D+ L L L+ N+ ++ +L++L L N +
Sbjct: 306 HFKWQSLSIIRCQLKQFP---TLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNAL 362
Query: 62 NNMENDYF--LTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP--CELSS 117
+ + L L L+L N +S+N L L LD + L V S
Sbjct: 363 SFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS 422
Query: 118 LFHLKSLFLGGNPIKTVRNDILQ 140
L L L + K + I
Sbjct: 423 LEKLLYLDISYTNTKIDFDGIFL 445
Score = 81.2 bits (201), Expect = 1e-17
Identities = 34/150 (22%), Positives = 58/150 (38%), Gaps = 7/150 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDM--RSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGF 58
L L LDLS N L + D+ SL L+LS+N ++ + L HL
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH 408
Query: 59 NKINNM-ENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDV--PCE 114
+ + + E FL+L KL L++ + L +L L ++ N D
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468
Query: 115 LSSLFHLKSLFLGGNPIKTVRNDILQDSKR 144
++ +L L L ++ + + R
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHR 498
Score = 80.5 bits (199), Expect = 2e-17
Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 7/139 (5%)
Query: 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINN 63
+ L++ SD + F + +++ ++L+ + L L + ++
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ 321
Query: 64 MENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPC---ELSSLFH 120
L L L L L NK S V L +L+ LDLS N L+ C
Sbjct: 322 FP---TLDLPFLKSLTLTMNKGSISFKKVA-LPSLSYLDLSRNALSFSGCCSYSDLGTNS 377
Query: 121 LKSLFLGGNPIKTVRNDIL 139
L+ L L N + + +
Sbjct: 378 LRHLDLSFNGAIIMSANFM 396
Score = 80.1 bits (198), Expect = 3e-17
Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 11/135 (8%)
Query: 6 KTLDLSHNKLVS--DSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNKI 61
T KL D +P S ++LS+N L +L + + L L L +I
Sbjct: 14 ITYQCMDQKLSKVPDDIP-----SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI 68
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSSLF 119
+E+ + L LS L L N I S L +L L + +L + + L
Sbjct: 69 ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128
Query: 120 HLKSLFLGGNPIKTV 134
LK L + N I +
Sbjct: 129 TLKKLNVAHNFIHSC 143
Score = 68.1 bits (167), Expect = 3e-13
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
++L LDLS +L S +F + L LN+S+N L L +L+ L FN
Sbjct: 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKIS 86
+I + L+ NL NN ++
Sbjct: 532 RIETSKGILQHFPKSLAFFNLTNNSVA 558
Score = 65.8 bits (161), Expect = 2e-12
Identities = 25/146 (17%), Positives = 48/146 (32%), Gaps = 14/146 (9%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHL------ 54
+LD+S N + F + L EL L N + + T +NL L
Sbjct: 179 NPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237
Query: 55 ---LLGFNKINNMENDYFLTLTKLSLLNL---KNNKISEVSSNVGDLINLAILDLSDNEL 108
+ E L +++ N S+ L N++ + L+ +
Sbjct: 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI 297
Query: 109 TDVPCELSSLFHLKSLFLGGNPIKTV 134
+ ++ F +SL + +K
Sbjct: 298 KYLE-DVPKHFKWQSLSIIRCQLKQF 322
Score = 64.7 bits (158), Expect = 4e-12
Identities = 19/114 (16%), Positives = 45/114 (39%), Gaps = 3/114 (2%)
Query: 30 TELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVS 89
+L+ +P + ++ L FN + +++ F ++L L+L +I +
Sbjct: 14 ITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72
Query: 90 SNV-GDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQD 141
L +L+ L L+ N + S L L++L + ++ + +
Sbjct: 73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126
Score = 62.4 bits (152), Expect = 3e-11
Identities = 24/152 (15%), Positives = 49/152 (32%), Gaps = 15/152 (9%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMR--------SLTELNLSYNQLTMLPVCT--DCKNL 51
L+ L L + + + ++ E L+Y + N+
Sbjct: 228 LAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV 287
Query: 52 THLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDV 111
+ + L I +E+ K L++ ++ + + DL L L L+ N+ +
Sbjct: 288 SAMSLAGVSIKYLEDVPKHF--KWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSIS 343
Query: 112 PCELSSLFHLKSLFLGGNPIKTVRNDILQDSK 143
+ +L L L L N + D
Sbjct: 344 F-KKVALPSLSYLDLSRNALSFSGCCSYSDLG 374
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 92.6 bits (230), Expect = 1e-21
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
S L+ L +S N+L S LP L +L N+LT LP L L++ N++
Sbjct: 180 PSGLQELSVSDNQLAS--LPTLPS--ELYKLWAYNNRLTSLP--ALPSGLKELIVSGNRL 233
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
++ ++L L + N+++ + L L + N+LT +P L L
Sbjct: 234 TSLPV----LPSELKELMVSGNRLTSLPMLPS---GLLSLSVYRNQLTRLPESLIHLSSE 286
Query: 122 KSLFLGGNPIKTVRNDILQ 140
++ L GNP+ L+
Sbjct: 287 TTVNLEGNPLSERTLQALR 305
Score = 83.0 bits (205), Expect = 3e-18
Identities = 30/140 (21%), Positives = 60/140 (42%), Gaps = 18/140 (12%)
Query: 2 LSHLKTLDLSHNKLVSDSLP-LFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
L+TL++S N+L S LP L + L+ + L LP L L + N+
Sbjct: 80 PPELRTLEVSGNQLTS--LPVLPPGLLELSIFSNPLTHLPALP-----SGLCKLWIFGNQ 132
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
+ ++ L L++ +N+++ + + +L L +N+LT +P S
Sbjct: 133 LTSLPVL----PPGLQELSVSDNQLASLPALPSELCKL---WAYNNQLTSLPMLPSG--- 182
Query: 121 LKSLFLGGNPIKTVRNDILQ 140
L+ L + N + ++ +
Sbjct: 183 LQELSVSDNQLASLPTLPSE 202
Score = 82.6 bits (204), Expect = 3e-18
Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 18/138 (13%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVC-TDCKNLTHLLLGFNK 60
+H+ TL + N L S LP L L +S NQLT LPV L+
Sbjct: 60 PAHITTLVIPDNNLTS--LPALP--PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH 115
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
+ + + L L + N+++ + L L +SDN+L +P S
Sbjct: 116 LPAL-------PSGLCKLWIFGNQLTSLPVLPP---GLQELSVSDNQLASLPALPS---E 162
Query: 121 LKSLFLGGNPIKTVRNDI 138
L L+ N + ++
Sbjct: 163 LCKLWAYNNQLTSLPMLP 180
Score = 80.7 bits (199), Expect = 2e-17
Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 12/139 (8%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
S L L +N+L S LP L EL +S N+LT LP L L++ N++
Sbjct: 200 PSELYKLWAYNNRLTS--LPALP--SGLKELIVSGNRLTSLP--VLPSELKELMVSGNRL 253
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
++ + L L++ N+++ + ++ L + ++L N L++ + +
Sbjct: 254 TSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR--EI 307
Query: 122 KSLFLGGNPIKTVRNDILQ 140
S PI
Sbjct: 308 TSAPGYSGPIIRFDMAGAS 326
Score = 79.2 bits (195), Expect = 5e-17
Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 15/138 (10%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
+ + L++ + L +LP + +T L + N LT LP L L + N+
Sbjct: 38 LNNGNAVLNVGESGL--TTLPDCL-PAHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQ 92
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
+ ++ L +LS+ + + + L L + N+LT +P
Sbjct: 93 LTSLPVL-PPGLLELSIFSNPLTHLPAL------PSGLCKLWIFGNQLTSLPVLPPG--- 142
Query: 121 LKSLFLGGNPIKTVRNDI 138
L+ L + N + ++
Sbjct: 143 LQELSVSDNQLASLPALP 160
Score = 59.1 bits (143), Expect = 3e-10
Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 5/124 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVC-TDCKNLTHLLLGFNK 60
S LK L +S N+L SLP+ L L++ NQLT LP + T + L N
Sbjct: 240 PSELKELMVSGNRL--TSLPMLPS--GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 295
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
++ +T + + ++ L +D + E +
Sbjct: 296 LSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADR 355
Query: 121 LKSL 124
Sbjct: 356 WHMF 359
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 92.4 bits (230), Expect = 2e-21
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 8/153 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLLLGF 58
LSHL++L+LS+N+ +S F + L L+L++ +L + + L L L
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEV----SSNVGDLINLAILDLSDNELTDVP-C 113
+ ++ F L L LNL+ N + ++++ L L IL LS +L+ +
Sbjct: 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494
Query: 114 ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRII 146
+SL + + L N + + + L K I
Sbjct: 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY 527
Score = 92.0 bits (229), Expect = 2e-21
Identities = 35/147 (23%), Positives = 56/147 (38%), Gaps = 6/147 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L +L LDL+ ++ F L L L+ N L + + K L HL
Sbjct: 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSS 117
I++++ L L L +N IS + L +LD +N + + E +SS
Sbjct: 116 GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175
Query: 118 LFHLKSLFL--GGNPIKTVRNDILQDS 142
L +L L GN I + +
Sbjct: 176 LQQATNLSLNLNGNDIAGIEPGAFDSA 202
Score = 91.6 bits (228), Expect = 3e-21
Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 7/160 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
L TL L+ N L+ + ++L L ++ + + K L L LG N
Sbjct: 80 QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN 139
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAI--LDLSDNELTDVPCELS 116
I++++ KL +L+ +NN I +S L L+L+ N++ +
Sbjct: 140 HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199
Query: 117 SLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDY 156
+SL GG V L++S I + +
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNST--IQSLWLGTFED 237
Score = 90.8 bits (226), Expect = 6e-21
Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 6/150 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVC-TDCKNLTHLLLGFNK 60
+++++L + + S F L EL+L+ L+ LP L L+L NK
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK 312
Query: 61 INNMENDYFLTLTKLSLLNLKNNKI--SEVSSNVGDLINLAILDLSDNELTDVPC---EL 115
N+ L+ L++K N + + +L NL LDLS +++ C +L
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372
Query: 116 SSLFHLKSLFLGGNPIKTVRNDILQDSKRI 145
+L HL+SL L N +++ + ++ ++
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402
Score = 89.7 bits (223), Expect = 2e-20
Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 4/144 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
+ + L+ S N L + F + +LT L+L+ Q+ + L L+L N
Sbjct: 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPC-ELSS 117
+ M L L IS + + L L L N ++ + +
Sbjct: 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151
Query: 118 LFHLKSLFLGGNPIKTVRNDILQD 141
LK L N I + + +
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSS 175
Score = 87.8 bits (218), Expect = 7e-20
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 7/146 (4%)
Query: 2 LSHLKTLDLSHNKLVS-DSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
L+ LDL+ +L D+ F ++ L LNLS++ L + + L HL L
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458
Query: 59 NKI---NNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE 114
N N + + TL +L +L L +S + + L + +DLS N LT E
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518
Query: 115 LSSLFHLKSLFLGGNPIKTVRNDILQ 140
S L L N I + +L
Sbjct: 519 ALSHLKGIYLNLASNHISIILPSLLP 544
Score = 87.0 bits (216), Expect = 1e-19
Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT-----MLPVCTDCKNLTHLLL 56
L LK L+LSH+ L S LF + +L LNL N L L+L
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483
Query: 57 GFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-L 115
F +++++ F +L ++ ++L +N+++ S + L+L+ N ++ + L
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLL 543
Query: 116 SSLFHLKSLFLGGNPI 131
L +++ L NP+
Sbjct: 544 PILSQQRTINLRQNPL 559
Score = 85.5 bits (212), Expect = 5e-19
Identities = 37/148 (25%), Positives = 57/148 (38%), Gaps = 8/148 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQL-TMLPVCT--DCKNLTHLLLGF 58
LS LK L LS NK + + SLT L++ N L + +NL L L
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359
Query: 59 NKINNME--NDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE- 114
+ I + N L+ L LNL N+ + + + L +LDL+ L +
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419
Query: 115 -LSSLFHLKSLFLGGNPIKTVRNDILQD 141
+L LK L L + + +
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDG 447
Score = 85.1 bits (211), Expect = 5e-19
Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 11/146 (7%)
Query: 6 KTLDLSHNKL--VSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNKI 61
KT + + L + +LP S L S+N L + T NLT L L +I
Sbjct: 15 KTYNCENLGLNEIPGTLP-----NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI 69
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDV-PCELSSLF 119
+ D F + +L L L N + ++ L L ++ + L +
Sbjct: 70 YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129
Query: 120 HLKSLFLGGNPIKTVRNDILQDSKRI 145
L+SL+LG N I +++ ++++
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKL 155
Score = 80.8 bits (200), Expect = 1e-17
Identities = 23/139 (16%), Positives = 50/139 (35%), Gaps = 7/139 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLPVCTDCK----NLTHLL 55
+ ++L+ + + ++SL + ++ +
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260
Query: 56 LGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE- 114
L + N+ ++ F + L L+L +SE+ S + L L L LS N+ ++
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS 320
Query: 115 LSSLFHLKSLFLGGNPIKT 133
S+ L L + GN +
Sbjct: 321 ASNFPSLTHLSIKGNTKRL 339
Score = 76.2 bits (188), Expect = 5e-16
Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 8/144 (5%)
Query: 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVC----TDCKNLTHLLLGFN 59
+L+L+ N + P D LN Q ++ + ++L
Sbjct: 180 TNLSLNLNGNDIAGIE-PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238
Query: 60 KINNMENDYFLTLTKLSL--LNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCELS 116
++ F L ++S+ +NL+ + +SSN L LDL+ L+++P L
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV 298
Query: 117 SLFHLKSLFLGGNPIKTVRNDILQ 140
L LK L L N + +
Sbjct: 299 GLSTLKKLVLSANKFENLCQISAS 322
Score = 74.7 bits (184), Expect = 2e-15
Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 9/148 (6%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTH--LLLG 57
L++L L N + S LP L L+ N + L + + T+ L L
Sbjct: 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187
Query: 58 FNKINNMENDYF--LTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCEL 115
N I +E F L+ +N + + +L + D + D+ +
Sbjct: 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247
Query: 116 ---SSLFHLKSLFLGGNPIKTVRNDILQ 140
++S+ L + + ++
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFH 275
Score = 72.7 bits (179), Expect = 7e-15
Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 7/114 (6%)
Query: 2 LSHLKTLDLSHNKLVS---DSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLL 56
L L+ L+L N + L L LS+ L+ + K + H+ L
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507
Query: 57 GFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELT 109
N++ + + L + LNL +N IS + ++ L ++L N L
Sbjct: 508 SHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLD 560
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 92.1 bits (228), Expect = 2e-21
Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 6/135 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
+ +L + ++ S+ ++ + + + + N+T L L NK+
Sbjct: 20 FAETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL 77
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
+++ L L L L NKI ++ S++ DL L L L N ++D+ L L L
Sbjct: 78 TDIKP--LTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNGISDING-LVHLPQL 133
Query: 122 KSLFLGGNPIKTVRN 136
+SL+LG N I +
Sbjct: 134 ESLYLGNNKITDITV 148
Score = 76.7 bits (188), Expect = 4e-16
Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 6/132 (4%)
Query: 5 LKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNM 64
+ + + + NL +T + ++ ++ + I ++
Sbjct: 1 MGETITVSTPI--KQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV 58
Query: 65 ENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSL 124
+ L ++ L L NK++++ + +L NL L L +N++ D+ L L LKSL
Sbjct: 59 QG--IQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDLSS-LKDLKKLKSL 114
Query: 125 FLGGNPIKTVRN 136
L N I +
Sbjct: 115 SLEHNGISDING 126
Score = 72.4 bits (177), Expect = 1e-14
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L LK+L L HN + + + + L L L N++T + V + L L L N+I
Sbjct: 108 LKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI 165
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTD-VPCELSSLFH 120
+++ LTKL L L N IS++ + L NL +L+L E + S+L
Sbjct: 166 SDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVV 222
Query: 121 LKSL 124
++
Sbjct: 223 PNTV 226
Score = 59.4 bits (143), Expect = 2e-10
Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 4/115 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ L TL L N++ + + L L LS N ++ L KNL L L +
Sbjct: 152 LTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 209
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVS--SNVGDLINLAILDLSDNELTDVPCE 114
N ++ L + + + + S+ GD + +V
Sbjct: 210 LNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFI 264
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 87.8 bits (218), Expect = 4e-21
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 4/129 (3%)
Query: 6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINN 63
+ L N + F + L ++LS NQ++ L ++L L+L NKI
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 64 MENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCE-LSSLFHL 121
+ F L L LL L NKI+ + + L NL +L L DN+L + S L +
Sbjct: 95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154
Query: 122 KSLFLGGNP 130
+++ L NP
Sbjct: 155 QTMHLAQNP 163
Score = 72.0 bits (177), Expect = 2e-15
Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 28 SLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKI 85
++TE+ L N + ++P + K L + L N+I+ + D F L L+ L L NKI
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Query: 86 SEVSSNVGD-LINLAILDLSDNELTDVPCEL-SSLFHLKSLFLGGNPIKTVRNDILQDSK 143
+E+ ++ + L +L +L L+ N++ + + L +L L L N ++T+
Sbjct: 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF-SPL 151
Query: 144 RIISHI 149
R I +
Sbjct: 152 RAIQTM 157
Score = 60.0 bits (146), Expect = 4e-11
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 2 LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLG 57
L L +L L NK+ LP LF + SL L L+ N++ L D NL L L
Sbjct: 79 LRSLNSLVLYGNKIT--ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136
Query: 58 FNKINNMENDYFLTLTKLSLLNLKNN 83
NK+ + F L + ++L N
Sbjct: 137 DNKLQTIAKGTFSPLRAIQTMHLAQN 162
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 89.4 bits (222), Expect = 1e-20
Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 8/147 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
++ L + L D ++ + + + + +++ ++P K+L L L N
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344
Query: 60 KINNM---ENDYFLTLTKLSLLNLKNNKISEVSSNVG---DLINLAILDLSDNELTDVPC 113
+ + L L L N + + L NL LD+S N +P
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD 404
Query: 114 ELSSLFHLKSLFLGGNPIKTVRNDILQ 140
++ L L I+ V+ I Q
Sbjct: 405 SCQWPEKMRFLNLSSTGIRVVKTCIPQ 431
Score = 89.4 bits (222), Expect = 2e-20
Identities = 37/144 (25%), Positives = 56/144 (38%), Gaps = 6/144 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHL----LLG 57
L L+ LDLS N L S S F + SL LNL N L V + NLT+L +
Sbjct: 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132
Query: 58 FNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVP-CEL 115
+ + F LT L+ L +K + S + ++ L L +E +
Sbjct: 133 VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFA 192
Query: 116 SSLFHLKSLFLGGNPIKTVRNDIL 139
L ++ L L + + L
Sbjct: 193 DILSSVRYLELRDTNLARFQFSPL 216
Score = 87.5 bits (217), Expect = 8e-20
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 13/140 (9%)
Query: 2 LSHLKTLDLSHNKLVSDSLP---LFIDMRSLTELNLSYNQLTMLP----VCTDCKNLTHL 54
L L+ LDLS N +V + L SL L LS N L + + KNLT L
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392
Query: 55 LLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE 114
+ N + M + K+ LNL + I V + + L +LD+S+N L
Sbjct: 393 DISRNTFHPMPDS-CQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFS-- 447
Query: 115 LSSLFHLKSLFLGGNPIKTV 134
L L+ L++ N +KT+
Sbjct: 448 -LFLPRLQELYISRNKLKTL 466
Score = 85.9 bits (213), Expect = 3e-19
Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 10/147 (6%)
Query: 2 LSHLKTLDLSHNKL--VSDSLPLFIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGF 58
L+TL LS N L + + + + +++LT L++S N +P C + + L L
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSS 419
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSL 118
I ++ L +L++ NN + S L L L +S N+L +P + S
Sbjct: 420 TGIRVVKTCIP---QTLEVLDVSNNNLDSFSLF---LPRLQELYISRNKLKTLP-DASLF 472
Query: 119 FHLKSLFLGGNPIKTVRNDILQDSKRI 145
L + + N +K+V + I +
Sbjct: 473 PVLLVMKISRNQLKSVPDGIFDRLTSL 499
Score = 84.4 bits (209), Expect = 8e-19
Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 6/145 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
++L+ L L +++ + F + SL L+LS N L+ L +L +L L N
Sbjct: 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108
Query: 60 KINNM-ENDYFLTLTKLSLLNL-KNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-L 115
+ F LT L L + SE+ L +L L++ L + + L
Sbjct: 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168
Query: 116 SSLFHLKSLFLGGNPIKTVRNDILQ 140
S+ + L L + +
Sbjct: 169 KSIRDIHHLTLHLSESAFLLEIFAD 193
Score = 84.0 bits (208), Expect = 1e-18
Identities = 30/146 (20%), Positives = 61/146 (41%), Gaps = 6/146 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
+ +K+LDLS NK+ +L L L +++ + +L HL L N
Sbjct: 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSN--VGDLINLAILDLSD-NELTDVPCE-L 115
++++ + +F L+ L LNL N + +L NL L + + +++
Sbjct: 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144
Query: 116 SSLFHLKSLFLGGNPIKTVRNDILQD 141
+ L L L + ++ ++ L+
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKS 170
Score = 80.9 bits (200), Expect = 1e-17
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 13/150 (8%)
Query: 3 SHLKTLDLSHNKLVS--DSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
D S L ++ L+LS+N++T + C NL L+L
Sbjct: 5 DASGVCDGRSRSFTSIPSGLT-----AAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVP--CEL 115
++IN +E D F +L L L+L +N +S +SS+ G L +L L+L N +
Sbjct: 60 SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119
Query: 116 SSLFHLKSLFLGG-NPIKTVRNDILQDSKR 144
+L +L++L +G +R
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTS 149
Score = 67.1 bits (164), Expect = 6e-13
Identities = 19/106 (17%), Positives = 41/106 (38%), Gaps = 8/106 (7%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
++ L+LS + + ++L L++S N L + L L + NK+
Sbjct: 409 PEKMRFLNLSSTGIRVVKTCIP---QTLEVLDVSNNNLDSFSLFL--PRLQELYISRNKL 463
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDN 106
+ + L ++ + N++ V + L +L + L N
Sbjct: 464 KTLPDASLFP--VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
Score = 64.0 bits (156), Expect = 8e-12
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ LD+S+N L S + + L EL +S N+L LP + L + + N++
Sbjct: 430 PQTLEVLDVSNNNLDS----FSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQL 485
Query: 62 NNMENDYFLTLTKLSLLNLKNNKI 85
++ + F LT L + L N
Sbjct: 486 KSVPDGIFDRLTSLQKIWLHTNPW 509
Score = 55.9 bits (135), Expect = 4e-09
Identities = 19/161 (11%), Positives = 46/161 (28%), Gaps = 22/161 (13%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
+ + L L ++ + S+ L L L + + +
Sbjct: 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230
Query: 60 KINNMENDYFLTLTKL----------SLLNLKNNKISEVSSNVGD---------LINLAI 100
+ + + ++ F L KL + N + + + + D + +
Sbjct: 231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR 290
Query: 101 LDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQ 140
L + L S L +K + + + + V Q
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQ 331
Score = 48.6 bits (116), Expect = 8e-07
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L L+ L +S NKL +LP L + +S NQL +P + +L + L N
Sbjct: 450 LPRLQELYISRNKL--KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
Query: 60 KIN 62
+
Sbjct: 508 PWD 510
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 87.9 bits (218), Expect = 2e-20
Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 6/145 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
+L+ L L+ N + + F + SL L+LSYN L+ L +LT L L N
Sbjct: 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134
Query: 60 KINNM-ENDYFLTLTKLSLLNLKNN-KISEVSSNV-GDLINLAILDLSDNELTDVPCE-L 115
+ E F LTKL +L + N +++ L L L++ ++L + L
Sbjct: 135 PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194
Query: 116 SSLFHLKSLFLGGNPIKTVRNDILQ 140
S+ ++ L L + +
Sbjct: 195 KSIQNVSHLILHMKQHILLLEIFVD 219
Score = 79.4 bits (196), Expect = 2e-17
Identities = 34/144 (23%), Positives = 67/144 (46%), Gaps = 6/144 (4%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNK 60
+K+LDLS+N++ S +L L L+ N + + + +L HL L +N
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVS--SNVGDLINLAILDLSDNE-LTDVPCE-LS 116
++N+ + +F L+ L+ LNL N + S L L IL + + + T + + +
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171
Query: 117 SLFHLKSLFLGGNPIKTVRNDILQ 140
L L+ L + + +++ L+
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLK 195
Score = 79.4 bits (196), Expect = 2e-17
Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 11/140 (7%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L+ L+ L++ + L S +++++ L L Q +L ++ L L
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232
Query: 60 KINNM--------ENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDV 111
++ E + + + + + + +V + + L L+ S N+L V
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV 292
Query: 112 PCE-LSSLFHLKSLFLGGNP 130
P L L+ ++L NP
Sbjct: 293 PDGIFDRLTSLQKIWLHTNP 312
Score = 79.4 bits (196), Expect = 2e-17
Identities = 27/181 (14%), Positives = 58/181 (32%), Gaps = 37/181 (20%)
Query: 2 LSHLKTLDLSHNKLVS------------------------DSLP--LFIDMRSLTELNLS 35
LS L L+L N + + F + L EL +
Sbjct: 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182
Query: 36 YNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISE------ 87
+ L +N++HL+L + + + + + L L++ +
Sbjct: 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242
Query: 88 ---VSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKR 144
++++ + ++D L V L+ + L L N +K+V + I
Sbjct: 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTS 302
Query: 145 I 145
+
Sbjct: 303 L 303
Score = 78.6 bits (194), Expect = 5e-17
Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 6/140 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHL----LLG 57
L L+ LDLS+N L + S F + SLT LNL N L + +LT L +
Sbjct: 99 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158
Query: 58 FNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCEL- 115
+ ++ F LT L L + + + + N++ L L + +
Sbjct: 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFV 218
Query: 116 SSLFHLKSLFLGGNPIKTVR 135
++ L L + T
Sbjct: 219 DVTSSVECLELRDTDLDTFH 238
Score = 44.0 bits (104), Expect = 2e-05
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 73 TKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCEL-SSLFHLKSLFLGGNP 130
+ L+L NN+I+ +S++ +NL L L+ N + + + SSL L+ L L N
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 131 IKTVRNDILQD 141
+ + + +
Sbjct: 112 LSNLSSSWFKP 122
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 88.1 bits (219), Expect = 4e-20
Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 6/135 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L++L L L+ N+L + + +LT+L+L+ NQ++ L + LT L LG N+I
Sbjct: 220 LTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 277
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
+N+ LT L+ L L N++ ++ S + +L NL L L N ++D+ +SSL L
Sbjct: 278 SNISP--LAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNISDIS-PVSSLTKL 333
Query: 122 KSLFLGGNPIKTVRN 136
+ LF N + V +
Sbjct: 334 QRLFFYNNKVSDVSS 348
Score = 85.0 bits (211), Expect = 4e-19
Identities = 43/133 (32%), Positives = 73/133 (54%), Gaps = 6/133 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L++L++L ++N++ + + +L EL+L+ NQL + NLT L L N+I
Sbjct: 198 LTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI 255
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
+N+ LTKL+ L L N+IS + S + L L L+L++N+L D+ +S+L +L
Sbjct: 256 SNLAP--LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDIS-PISNLKNL 311
Query: 122 KSLFLGGNPIKTV 134
L L N I +
Sbjct: 312 TYLTLYFNNISDI 324
Score = 83.9 bits (208), Expect = 1e-18
Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 6/135 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ L + D+ +T L + + NLT + N++
Sbjct: 23 LAEKMKTVLGKTNV--TDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL 80
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
++ LTKL + + NN+I+++ + + +L NL L L +N++TD+ L +L +L
Sbjct: 81 TDITP--LKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLFNNQITDID-PLKNLTNL 136
Query: 122 KSLFLGGNPIKTVRN 136
L L N I +
Sbjct: 137 NRLELSSNTISDISA 151
Score = 83.9 bits (208), Expect = 1e-18
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 6/131 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L + TL + S+ + +LT++N S NQLT + + L +L+ N+I
Sbjct: 45 LDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI 102
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
++ LT L+ L L NN+I+++ + +L NL L+LS N ++D+ LS L L
Sbjct: 103 ADITP--LANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDIS-ALSGLTSL 158
Query: 122 KSLFLGGNPIK 132
+ L G
Sbjct: 159 QQLSFGNQVTD 169
Score = 82.3 bits (204), Expect = 4e-18
Identities = 36/133 (27%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L++L L L +N++ + ++ +L L LS N ++ + + +L L G N++
Sbjct: 111 LTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQV 167
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
+++ LT L L++ +NK+S++ S + L NL L ++N+++D+ L L +L
Sbjct: 168 TDLKP--LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT-PLGILTNL 223
Query: 122 KSLFLGGNPIKTV 134
L L GN +K +
Sbjct: 224 DELSLNGNQLKDI 236
Score = 81.5 bits (202), Expect = 7e-18
Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 7/133 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ L+ L + L ++ +L L++S N+++ + V NL L+ N+I
Sbjct: 155 LTSLQQLSFGNQVT---DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI 211
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
+++ LT L L+L N++ ++ + + L NL LDL++N+++++ LS L L
Sbjct: 212 SDITP--LGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLA-PLSGLTKL 267
Query: 122 KSLFLGGNPIKTV 134
L LG N I +
Sbjct: 268 TELKLGANQISNI 280
Score = 77.3 bits (191), Expect = 2e-16
Identities = 28/137 (20%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ L L+L+ N+L + + ++++LT L L +N ++ + + L L NK+
Sbjct: 286 LTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKV 343
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
+++ + LT ++ L+ +N+IS++ + + +L + L L+D T+ P + +
Sbjct: 344 SDVSS--LANLTNINWLSAGHNQISDL-TPLANLTRITQLGLNDQAWTNAPVNYKANVSI 400
Query: 122 KSLFLGGNPIKTVRNDI 138
+ I
Sbjct: 401 PNTVKNVTGALIAPATI 417
Score = 72.7 bits (179), Expect = 7e-15
Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 4/131 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L +L L L N + + + L L N+++ + + N+ L G N+I
Sbjct: 308 LKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQI 365
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
+++ LT+++ L L + + N +++ + P +S
Sbjct: 366 SDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSY 423
Query: 122 KSLFLGGNPIK 132
+ N
Sbjct: 424 TEPDITWNLPS 434
Score = 66.1 bits (162), Expect = 1e-12
Identities = 17/111 (15%), Positives = 44/111 (39%), Gaps = 3/111 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ L+ L +NK+ + ++ ++ L+ +NQ++ L + +T L L
Sbjct: 330 LTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAW 387
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP 112
N +Y ++ + + + + + D + D++ N +
Sbjct: 388 TNAPVNYKANVSIPNTVKNVTGALIA-PATISDGGSYTEPDITWNLPSYTN 437
Score = 55.7 bits (135), Expect = 4e-09
Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 5/108 (4%)
Query: 28 SLTELNLSY-NQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKIS 86
L ++ + + T +LG + + + L +++ L I
Sbjct: 2 PLGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK 59
Query: 87 EVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTV 134
+ V L NL ++ S+N+LTD+ L +L L + + N I +
Sbjct: 60 SI-DGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI 105
Score = 31.1 bits (71), Expect = 0.32
Identities = 7/82 (8%), Positives = 24/82 (29%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ + L L+ + + ++ + L +D + T + +N
Sbjct: 374 LTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLP 433
Query: 62 NNMENDYFLTLTKLSLLNLKNN 83
+ + +++
Sbjct: 434 SYTNEVSYTFSQPVTIGKGTTT 455
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 86.3 bits (214), Expect = 5e-20
Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ + L+LS N L ++ ++S+ L+L+ Q+T + NL L L N+I
Sbjct: 84 LTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQI 141
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
N+ LT L L++ N ++S+++ + +L L L DN+++D+ L+SL +L
Sbjct: 142 TNISP--LAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDIS-PLASLPNL 197
Query: 122 KSLFLGGNPIKTVRN 136
+ L N I V
Sbjct: 198 IEVHLKNNQISDVSP 212
Score = 85.9 bits (213), Expect = 7e-20
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 6/135 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L + TL + ++ + +L L L NQ+T L + +T L L N +
Sbjct: 40 LDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL 97
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
N+ L + L+L + +I++V + + L NL +L L N++T++ L+ L +L
Sbjct: 98 KNVSA--IAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNIS-PLAGLTNL 153
Query: 122 KSLFLGGNPIKTVRN 136
+ L +G + +
Sbjct: 154 QYLSIGNAQVSDLTP 168
Score = 82.8 bits (205), Expect = 1e-18
Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 6/135 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L++ + + + D+ +T L+ +T + NL L L N+I
Sbjct: 18 LANAIKIAAGKSNV--TDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI 75
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
++ LTK++ L L N + V S + L ++ LDL+ ++TDV L+ L +L
Sbjct: 76 TDLAP--LKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVT-PLAGLSNL 131
Query: 122 KSLFLGGNPIKTVRN 136
+ L+L N I +
Sbjct: 132 QVLYLDLNQITNISP 146
Score = 71.3 bits (175), Expect = 1e-14
Identities = 33/128 (25%), Positives = 67/128 (52%), Gaps = 5/128 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
LS+L+ L L N++ + + + +L L++ Q++ L + LT L NKI
Sbjct: 128 LSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKI 185
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
+++ +L L ++LKNN+IS+V S + + NL I+ L++ +T+ P ++ +
Sbjct: 186 SDISP--LASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQTITNQPVFYNNNLVV 242
Query: 122 KSLFLGGN 129
++ G +
Sbjct: 243 PNVVKGPS 250
Score = 55.1 bits (133), Expect = 4e-09
Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 4/124 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
LS L TL NK+ + + +L E++L NQ++ + + NL + L I
Sbjct: 172 LSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI 229
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVS--SNVGDLINLAILDLSDNELTDVPCELSSLF 119
N Y L +++ + + S+ G + + + + +V +
Sbjct: 230 TNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSV 289
Query: 120 HLKS 123
K+
Sbjct: 290 TFKN 293
Score = 30.4 bits (69), Expect = 0.56
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 80 LKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTV 134
+ I+ + L N + + +TD + L + +L G + T+
Sbjct: 4 TQPTAINVIF-PDPALANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTI 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 86.5 bits (215), Expect = 5e-20
Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 13/139 (9%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVC-TDCKNLTHL-LLGF 58
LSHL+ + + L+ LP + L L L+ N L LP L L +
Sbjct: 103 LSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160
Query: 59 NKI--------NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTD 110
++ + + L L L L+ I + +++ +L NL L + ++ L+
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA 220
Query: 111 VPCELSSLFHLKSLFLGGN 129
+ + L L+ L L G
Sbjct: 221 LGPAIHHLPKLEELDLRGC 239
Score = 74.2 bits (183), Expect = 1e-15
Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 13/141 (9%)
Query: 2 LSHLKTLDLSH-NKLVS--------DSLPLFIDMRSLTELNLSYNQLTMLPVC-TDCKNL 51
L+ L+ L + +L D+ + +L L L + + LP + +NL
Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNL 208
Query: 52 THLLLGFNKINNMENDYFLTLTKLSLLNL-KNNKISEVSSNVGDLINLAILDLSD-NELT 109
L + + ++ + L KL L+L + G L L L D + L
Sbjct: 209 KSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267
Query: 110 DVPCELSSLFHLKSLFLGGNP 130
+P ++ L L+ L L G
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCV 288
Score = 69.6 bits (171), Expect = 6e-14
Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 13/145 (8%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVC-TDCKNLTHLLLGFN 59
++ + + L + + L L L L P +L H+ +
Sbjct: 55 SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA 114
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSD-NELTDVPCELSS- 117
+ + + L L L N + + +++ L L L + ELT++P L+S
Sbjct: 115 GLMELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLAST 173
Query: 118 --------LFHLKSLFLGGNPIKTV 134
L +L+SL L I+++
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRSL 198
Score = 62.7 bits (153), Expect = 1e-11
Identities = 17/141 (12%), Positives = 41/141 (29%), Gaps = 9/141 (6%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
S + L + + P + + N + +
Sbjct: 11 SSGRENLYFQGSTALR---PYHDVLSQWQRHYNADRNRWHSA--WRQANSNNPQIETRTG 65
Query: 62 NNMEND----YFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSS 117
++ T L L++ + + L +L + + L ++P +
Sbjct: 66 RALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQ 125
Query: 118 LFHLKSLFLGGNPIKTVRNDI 138
L++L L NP++ + I
Sbjct: 126 FAGLETLTLARNPLRALPASI 146
Score = 58.8 bits (143), Expect = 2e-10
Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 16/123 (13%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSY-NQLTMLPVC-TDCKNLTHL-LLG 57
L +LK+L + ++ L + L I + L EL+L L P L L L
Sbjct: 205 LQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262
Query: 58 FNKI----NNMENDYFLTLTKLSLLNLKNN-KISEVSSNVGDLINLAILDLSDNELTDVP 112
+ + ++ LT+L L+L+ +S + S + L I+ + + +
Sbjct: 263 CSNLLTLPLDIHR-----LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317
Query: 113 CEL 115
Sbjct: 318 QHR 320
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 85.5 bits (212), Expect = 7e-20
Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 6/135 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L ++ L L+ NKL + ++++L L L N++ L D K L L L N I
Sbjct: 67 LPNVTKLFLNGNKLTD--IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
+++ + L +L L L NNKI++++ + L L L L DN+++D+ L+ L L
Sbjct: 125 SDING--LVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIV-PLAGLTKL 180
Query: 122 KSLFLGGNPIKTVRN 136
++L+L N I +R
Sbjct: 181 QNLYLSKNHISDLRA 195
Score = 84.7 bits (210), Expect = 1e-19
Identities = 38/135 (28%), Positives = 71/135 (52%), Gaps = 6/135 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ + + +++ + S+ + ++T+L L+ N+LT + + KNL L L NK+
Sbjct: 45 LNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKV 102
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
++ + L KL L+L++N IS+++ + L L L L +N++TD+ LS L L
Sbjct: 103 KDLSS--LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDITV-LSRLTKL 158
Query: 122 KSLFLGGNPIKTVRN 136
+L L N I +
Sbjct: 159 DTLSLEDNQISDIVP 173
Score = 84.7 bits (210), Expect = 2e-19
Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 6/135 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
+ +L + ++ S+ ++ + + + + N+T L L NK+
Sbjct: 23 FAETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL 80
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
+++ L L L L NK+ ++ S++ DL L L L N ++D+ L L L
Sbjct: 81 TDIKP--LANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQL 136
Query: 122 KSLFLGGNPIKTVRN 136
+SL+LG N I +
Sbjct: 137 ESLYLGNNKITDITV 151
Score = 68.5 bits (168), Expect = 9e-14
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L LK+L L HN + + + + L L L N++T + V + L L L N+I
Sbjct: 111 LKKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI 168
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP-CELSSLFH 120
+++ LTKL L L N IS++ + L NL +L+L E + P S+L
Sbjct: 169 SDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVV 225
Query: 121 LKSL 124
++
Sbjct: 226 PNTV 229
Score = 58.9 bits (143), Expect = 2e-10
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 4/112 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ L TL L N++ + + L L LS N ++ L KNL L L +
Sbjct: 155 LTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 212
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVS--SNVGDLINLAILDLSDNELTDV 111
N ++ L + + + + S+ GD + +V
Sbjct: 213 LNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 264
Score = 54.3 bits (131), Expect = 7e-09
Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 4/107 (3%)
Query: 30 TELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVS 89
+E + + L + + L + + N+ I V
Sbjct: 5 SETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV- 61
Query: 90 SNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRN 136
+ L N+ L L+ N+LTD+ L++L +L LFL N +K + +
Sbjct: 62 QGIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLSS 107
Score = 28.1 bits (63), Expect = 3.0
Identities = 7/68 (10%), Positives = 23/68 (33%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L +L L+L + ++ + ++ + + L + +D + + ++
Sbjct: 199 LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLP 258
Query: 62 NNMENDYF 69
F
Sbjct: 259 EFTNEVSF 266
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 84.3 bits (209), Expect = 7e-20
Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Query: 6 KTLDLSHNKLVS-DSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKIN 62
L L++N+ ++ +F + L ++N S N++T + + +LL N++
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 63 NMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCE-LSSLFH 120
N+++ F L L L L++N+I+ V ++ L ++ +L L DN++T V +L
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154
Query: 121 LKSLFLGGNP 130
L +L L NP
Sbjct: 155 LSTLNLLANP 164
Score = 70.5 bits (173), Expect = 7e-15
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 8/134 (5%)
Query: 6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLLLGFNKIN 62
T+D S+ KL + +P I + EL L+ N+ T+L + L + NKI
Sbjct: 14 TTVDCSNQKL--NKIPEHIP-QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT 70
Query: 63 NMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCEL-SSLFH 120
++E F + ++ + L +N++ V + L +L L L N +T V + L
Sbjct: 71 DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130
Query: 121 LKSLFLGGNPIKTV 134
++ L L N I TV
Sbjct: 131 VRLLSLYDNQITTV 144
Score = 63.1 bits (154), Expect = 3e-12
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 2 LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLG 57
S + + L+ N+L ++ +F + SL L L N++T + ++ L L
Sbjct: 80 ASGVNEILLTSNRLE--NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137
Query: 58 FNKINNMENDYFLTLTKLSLLNLKNN 83
N+I + F TL LS LNL N
Sbjct: 138 DNQITTVAPGAFDTLHSLSTLNLLAN 163
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 87.0 bits (216), Expect = 1e-19
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 9/151 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L+ LDLS ++ + + + L+ L L+ N + L + +L L+
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEV--SSNVGDLINLAILDLSDNELTDVPCE-LS 116
+ ++EN L L LN+ +N I +L NL LDLS N++ + C L
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170
Query: 117 SLFHLK----SLFLGGNPIKTVRNDILQDSK 143
L + SL L NP+ ++ ++ +
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201
Score = 85.9 bits (213), Expect = 3e-19
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 5/143 (3%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNK 60
K LDLS N L F L L+LS ++ + +L+ L+L N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDV--PCELSS 117
I ++ F L+ L L ++ + + G L L L+++ N + P S+
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 118 LFHLKSLFLGGNPIKTVRNDILQ 140
L +L+ L L N I+++ L+
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLR 170
Score = 85.1 bits (211), Expect = 5e-19
Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 6/163 (3%)
Query: 2 LSHLKTLDLSHNKLVS-DSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
L L+ LD H+ L +F+ +R+L L++S+ + + +L L +
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454
Query: 59 NKIN-NMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDV-PCEL 115
N N D F L L+ L+L ++ ++S L +L +L++S N +
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514
Query: 116 SSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHC 158
L L+ L N I T + LQ ++ + ++ D+ C
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557
Score = 83.9 bits (208), Expect = 1e-18
Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 11/163 (6%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
LSHL TL L+ N + S +L F + SL +L L L K L L + N
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 60 KINNME-NDYFLTLTKLSLLNLKNNKISEVS-SNVGDLINLAI----LDLSDNELTDVPC 113
I + + +YF LT L L+L +NKI + +++ L + + LDLS N + +
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194
Query: 114 ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDY 156
L L L N ++++ + ++ ++ RL
Sbjct: 195 GAFKEIRLHKLTLRNNFDSL---NVMKTCIQGLAGLEVHRLVL 234
Score = 80.1 bits (198), Expect = 3e-17
Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 9/144 (6%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT---DCKNLTHLLLGF 58
LS L+ L L S +++L ELN+++N + + + NL HL L
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 59 NKINNMENDYFLTLTKLSL----LNLKNNKISEVSSNVGDLINLAILDLSDNELTD--VP 112
NKI ++ L ++ L L+L N ++ + I L L L +N + +
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218
Query: 113 CELSSLFHLKSLFLGGNPIKTVRN 136
+ L L+ L + N
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGN 242
Score = 76.2 bits (188), Expect = 5e-16
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 10/139 (7%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTD----CKNLTHLLL 56
L LK L + NK + +D+ SL L+LS N L+ C+ +L +L L
Sbjct: 323 KLKSLKRLTFTSNKG--GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380
Query: 57 GFNKINNMENDYFLTLTKLSLLNLKNNKISEVS--SNVGDLINLAILDLSDNELTDV-PC 113
FN + M ++ FL L +L L+ +++ + ++S S L NL LD+S
Sbjct: 381 SFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
Query: 114 ELSSLFHLKSLFLGGNPIK 132
+ L L+ L + GN +
Sbjct: 440 IFNGLSSLEVLKMAGNSFQ 458
Score = 75.5 bits (186), Expect = 9e-16
Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 8/136 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+++ + L + + + F L L + P K+L L NK
Sbjct: 281 LTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKFGQFPTLK-LKSLKRLTFTSNKG 337
Query: 62 NNMENDYFLTLTKLSLLNLKNNKIS---EVSSNVGDLINLAILDLSDNELTDVPCELSSL 118
N + + L L L+L N +S S + +L LDLS N + + L
Sbjct: 338 GNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395
Query: 119 FHLKSLFLGGNPIKTV 134
L+ L + +K +
Sbjct: 396 EQLEHLDFQHSNLKQM 411
Score = 74.7 bits (184), Expect = 2e-15
Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 7/133 (5%)
Query: 6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNKINN 63
T +P + S L+LS+N L L + L L L +I
Sbjct: 10 ITYQCMELNF--YKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66
Query: 64 MENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSSLFHL 121
+E+ + +L+ LS L L N I ++ L +L L + L + + L L
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126
Query: 122 KSLFLGGNPIKTV 134
K L + N I++
Sbjct: 127 KELNVAHNLIQSF 139
Score = 72.8 bits (179), Expect = 7e-15
Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 7/143 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
+ L+L + K + ++SL L + N+ D +L L L N +
Sbjct: 303 NFGWQHLELVNCKF---GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL 359
Query: 62 NNME--NDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDV--PCELSS 117
+ + T L L+L N + +SSN L L LD + L + S
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419
Query: 118 LFHLKSLFLGGNPIKTVRNDILQ 140
L +L L + + N I
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFN 442
Score = 69.3 bits (170), Expect = 1e-13
Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 13/147 (8%)
Query: 2 LSHLKTLDLSHNKL------VSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLL 55
L L L + +L + D + LF + +++ +L + + + HL
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310
Query: 56 LGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPC-- 113
L K +L +L+ + K + DL +L LDLS N L+ C
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNA----FSEVDLPSLEFLDLSRNGLSFKGCCS 366
Query: 114 -ELSSLFHLKSLFLGGNPIKTVRNDIL 139
LK L L N + T+ ++ L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFL 393
Score = 60.4 bits (147), Expect = 1e-10
Identities = 27/155 (17%), Positives = 51/155 (32%), Gaps = 15/155 (9%)
Query: 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHL--------- 54
+LDLS N + F ++R L +L L N ++ + T + L L
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236
Query: 55 LLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV----GDLINLAILDLSDNELTD 110
+ + L L++ + + ++ L N++ L +
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296
Query: 111 VPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRI 145
V + S F + L L L+ KR+
Sbjct: 297 VK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 330
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 87.0 bits (216), Expect = 1e-19
Identities = 30/156 (19%), Positives = 66/156 (42%), Gaps = 19/156 (12%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTD---CKNLTHLLLGF 58
L +L+L++N++ + L+ ++N+L +P D ++ + +
Sbjct: 352 EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSY 411
Query: 59 NKINNMENDYFLT-------LTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTD 110
N+I +++ F +S +NL NN+IS+ + L+ ++L N LT+
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471
Query: 111 VPC--------ELSSLFHLKSLFLGGNPIKTVRNDI 138
+P + + L S+ L N + + +D
Sbjct: 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF 507
Score = 86.2 bits (214), Expect = 2e-19
Identities = 35/156 (22%), Positives = 64/156 (41%), Gaps = 17/156 (10%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT---------DCKNLT 52
++ +++LS+N++ LF L+ +NL N LT +P + + LT
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491
Query: 53 HLLLGFNKINNMEND-YFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNE---- 107
+ L FNK+ + +D TL L ++L N S+ + + L + +
Sbjct: 492 SIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQG 551
Query: 108 ---LTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQ 140
L + P ++ L L +G N I+ V I
Sbjct: 552 NRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITP 587
Score = 85.1 bits (211), Expect = 6e-19
Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 15/153 (9%)
Query: 2 LSHLKTLDLSHNKLVS--------DSLPLFIDMRSLTELNLSYNQLTMLPVCTD---CKN 50
L ++ ++++ N+ +S +L + + + YN L PV T K
Sbjct: 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK 331
Query: 51 LTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELT 109
L L +N++ F + KL+ LNL N+I+E+ +N G + L + N+L
Sbjct: 332 LGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK 390
Query: 110 DVP--CELSSLFHLKSLFLGGNPIKTVRNDILQ 140
+P + S+ + ++ N I +V
Sbjct: 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423
Score = 80.9 bits (200), Expect = 2e-17
Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 14/146 (9%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVCTD----------CKN 50
L L +++ + LP F+ + + +N++ N+ D +
Sbjct: 248 LKDLTDVEVYNCPN-LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306
Query: 51 LTHLLLGFNKINNME-NDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELT 109
+ + +G+N + + KL +L N++ G I LA L+L+ N++T
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT 366
Query: 110 DVPCEL-SSLFHLKSLFLGGNPIKTV 134
++P +++L N +K +
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKYI 392
Score = 77.4 bits (191), Expect = 2e-16
Identities = 29/152 (19%), Positives = 54/152 (35%), Gaps = 11/152 (7%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVC-TDCKNLTHLLLGFN 59
L ++DL NKL S + L ++LSYN + P + L +
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ 546
Query: 60 KINNMEN------DYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPC 113
+ + L+ L + +N I +V+ + N+++LD+ DN +
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDL 604
Query: 114 E-LSSLFHLKSLFLGGNPIKTVRNDILQDSKR 144
+ L + + +R D KR
Sbjct: 605 SYVCPYIEAGMYMLFYDKTQDIRGCDALDIKR 636
Score = 67.4 bits (165), Expect = 5e-13
Identities = 18/140 (12%), Positives = 38/140 (27%), Gaps = 11/140 (7%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLT---MLPVCTDCKNLTHLLLG 57
+ L L S +P I + L L L + L
Sbjct: 80 NGRVTGLSLEGFGA-SGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138
Query: 58 FNKINNMENDYFLTLTKLSLLNLKNNKISEVS------SNVGDLINLAILDLSDNELTDV 111
+ + + + +L + I+ + + + N +T V
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV 198
Query: 112 PCELSSLFHLKSLFLGGNPI 131
+ L L+ ++G +P
Sbjct: 199 SKAVMRLTKLRQFYMGNSPF 218
Score = 66.2 bits (162), Expect = 1e-12
Identities = 15/143 (10%), Positives = 49/143 (34%), Gaps = 14/143 (9%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
+ N + + + + L + + + +C +N K
Sbjct: 182 TLKDTQIGQLSNNI--TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP-------- 112
+++ D LT + + N ++++ + + L + +++++ N
Sbjct: 240 TEDLKWDNLKDLTDVEVYN--CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA 297
Query: 113 -CELSSLFHLKSLFLGGNPIKTV 134
+ ++ +++G N +KT
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTF 320
Score = 62.0 bits (151), Expect = 3e-11
Identities = 16/138 (11%), Positives = 36/138 (26%), Gaps = 11/138 (7%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFID---------MRSLTELNLSYNQLTMLPVCTDCKNLT 52
L+ L+ L L + + + ++ + P +L
Sbjct: 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRED-FSDLI 162
Query: 53 HLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDV- 111
+ + K + + +N I+ VS V L L + ++
Sbjct: 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAEN 222
Query: 112 PCELSSLFHLKSLFLGGN 129
CE + +
Sbjct: 223 ICEAWENENSEYAQQYKT 240
Score = 40.4 bits (95), Expect = 5e-04
Identities = 8/46 (17%), Positives = 16/46 (34%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT 46
+ ++ LD+ N +S L L Y++ + C
Sbjct: 585 ITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD 630
Score = 34.6 bits (80), Expect = 0.030
Identities = 11/92 (11%), Positives = 22/92 (23%), Gaps = 7/92 (7%)
Query: 45 CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKIS-----EVSSNVGDLINLA 99
+T L L + D LT+L +L L ++ + ++
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136
Query: 100 ILDLSDNELTDVPCELSSLFHLKSLFLGGNPI 131
+ L + I
Sbjct: 137 QKQKMRMHYQ--KTFVDYDPREDFSDLIKDCI 166
Score = 29.6 bits (67), Expect = 1.2
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 93 GDLINLAILDLSDNELT-DVPCELSSLFHLKSLFLGGNPIK 132
+ L L + VP + L L+ L LG + K
Sbjct: 78 NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEK 118
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 82.8 bits (205), Expect = 4e-19
Identities = 55/169 (32%), Positives = 82/169 (48%), Gaps = 7/169 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L+ L L+L +N+L + S +F D+ L L L+ NQL LP V L L LG N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCE-LSS 117
++ ++ + F LTKL L L N++ + + D L NL L LS N+L VP
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 118 LFHLKSLFLGGNPIKTVRNDILQDSKRIISH---IKTSRLDYHCQNVDG 163
L L+++ L GN R +IL S+ I + +K ++ DG
Sbjct: 178 LGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDG 226
Score = 82.4 bits (204), Expect = 6e-19
Identities = 45/133 (33%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINN 63
+ LDL L + S F + LT LNL YNQL L V D L L L N++ +
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 64 MENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCEL-SSLFHL 121
+ F LT+L L L N++ + S V D L L L L+ N+L +P L +L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 122 KSLFLGGNPIKTV 134
++L L N +++V
Sbjct: 158 QTLSLSTNQLQSV 170
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 81.6 bits (202), Expect = 1e-18
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 7/135 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
LS ++ + ++ + S L +L EL+LS+NQ++ L D L L + N++
Sbjct: 40 LSGVQNFNGDNSNIQS--LAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRL 97
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
N+ + LS L L NN++ + ++ L NL IL + +N+L + L L L
Sbjct: 98 KNLNG---IPSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKL 152
Query: 122 KSLFLGGNPIKTVRN 136
+ L L GN I
Sbjct: 153 EVLDLHGNEITNTGG 167
Score = 80.1 bits (198), Expect = 6e-18
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 7/135 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L++ +L + L ++ + N + + L NL L L N+I
Sbjct: 18 LANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQI 75
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
+++ LTKL L++ N++ ++ L+ L L +NEL D L L +L
Sbjct: 76 SDLSP--LKDLTKLEELSVNRNRLKNLNG--IPSACLSRLFLDNNELRDTD-SLIHLKNL 130
Query: 122 KSLFLGGNPIKTVRN 136
+ L + N +K++
Sbjct: 131 EILSIRNNKLKSIVM 145
Score = 68.1 bits (167), Expect = 1e-13
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ L+ L ++ N+L + + I L+ L L N+L KNL L + NK+
Sbjct: 84 LTKLEELSVNRNRLKNLN---GIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKL 140
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LSSLFH 120
++ L+KL +L+L N+I+ + L + +DL+ + + P + L+
Sbjct: 141 KSIVM--LGFLSKLEVLDLHGNEITNTG-GLTRLKKVNWIDLTGQKCVNEPVKYQPELYI 197
Query: 121 LKSL 124
++
Sbjct: 198 TNTV 201
Score = 67.7 bits (166), Expect = 1e-13
Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 6/127 (4%)
Query: 10 LSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYF 69
+ ++ P + + + NL +T L + + + + I ++
Sbjct: 3 IQRPTPINQVFPDP-GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--M 59
Query: 70 LTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGN 129
T L L+L +N+IS++ S + DL L L ++ N L ++ L LFL N
Sbjct: 60 QFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLDNN 116
Query: 130 PIKTVRN 136
++ +
Sbjct: 117 ELRDTDS 123
Score = 54.6 bits (132), Expect = 4e-09
Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 4/112 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L +L+ L + +NKL S+ + + L L+L N++T T K + + L K
Sbjct: 127 LKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKC 184
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVS--SNVGDLINLAILDLSDNELTDV 111
N Y L + + + + SN G ++ +L +V
Sbjct: 185 VNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEV 236
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 83.8 bits (207), Expect = 2e-18
Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 6/138 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDC----KNLTHLLLG 57
+S LD S+N L + L L L NQL L + K+L L +
Sbjct: 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382
Query: 58 FNKINNMEND-YFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELS 116
N ++ E L LN+ +N +++ + +LDL N++ +P ++
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKIKSIPKQVV 441
Query: 117 SLFHLKSLFLGGNPIKTV 134
L L+ L + N +K+V
Sbjct: 442 KLEALQELNVASNQLKSV 459
Score = 81.8 bits (202), Expect = 7e-18
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 8/135 (5%)
Query: 2 LSHLKTLDLSHNKL--VSDSLPLFIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLLL 56
L+ L+TL L N+L +S + M+SL +L++S N ++ C+ K+L L +
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406
Query: 57 GFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP-CEL 115
N + + ++ +L+L +NKI + V L L L+++ N+L VP
Sbjct: 407 SSNILTDTIFRCLPP--RIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIF 464
Query: 116 SSLFHLKSLFLGGNP 130
L L+ ++L NP
Sbjct: 465 DRLTSLQKIWLHTNP 479
Score = 73.0 bits (179), Expect = 7e-15
Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 3/184 (1%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
LS L+ L +SHN++ + +F + L L+LS+N+L + C NL HL L FN
Sbjct: 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS-CHPTVNLKHLDLSFNAF 102
Query: 62 NNM-ENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
+ + F +++L L L + + S +N++ + L E + L
Sbjct: 103 DALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD 162
Query: 121 LKSLFLGGN-PIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDK 179
+ L P + IL S + +++++ S + ++ S + + N
Sbjct: 163 FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKL 222
Query: 180 YKLD 183
L
Sbjct: 223 SNLT 226
Score = 71.4 bits (175), Expect = 2e-14
Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 7/138 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L L + + ++ ++ N + + M+ + HL N
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN 334
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVG---DLINLAILDLSDNELTDV--PCE 114
+ + + LT+L L L+ N++ E+S + +L LD+S N ++ +
Sbjct: 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394
Query: 115 LSSLFHLKSLFLGGNPIK 132
S L SL + N +
Sbjct: 395 CSWTKSLLSLNMSSNILT 412
Score = 70.3 bits (172), Expect = 5e-14
Identities = 26/156 (16%), Positives = 49/156 (31%), Gaps = 7/156 (4%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNK 60
L++S N + + + L L +S+N++ L V + L +L L NK
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSN--VGDLINLAILDLSDNELTDVPCELSSL 118
+ + L L+L N + G++ L L LS L +
Sbjct: 81 LVKI---SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137
Query: 119 FHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRL 154
++ + L + D +
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173
Score = 59.9 bits (145), Expect = 1e-10
Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 11/168 (6%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVC---TDCKNLTHLLLGF 58
L+ LDLSHNKL + +L L+LS+N LP+C + L L L
Sbjct: 68 NQELEYLDLSHNKL--VKIS-CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLST 124
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVG----DLINLAILDLSDNELTDVP-C 113
+ L +L + E G + +L I+ ++ E +
Sbjct: 125 THLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDV 184
Query: 114 ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNV 161
+ ++ +L+ + + L ++ ++ K S L +
Sbjct: 185 SVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232
Score = 39.1 bits (91), Expect = 0.001
Identities = 13/115 (11%), Positives = 37/115 (32%), Gaps = 9/115 (7%)
Query: 28 SLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNME-----NDYFLTLTKLSLLNLKN 82
+L + ++N + + + + K+ + +L LS+ + +
Sbjct: 226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS 285
Query: 83 NKISEVSSNVGD---LINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTV 134
+ S + + +N+ +S + + C S + L N +
Sbjct: 286 DVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDT 339
Score = 31.8 bits (72), Expect = 0.23
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQL 39
L L+ L+++ N+L S +F + SL ++ L N
Sbjct: 443 LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 79.4 bits (196), Expect = 5e-18
Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 3/146 (2%)
Query: 6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINN 63
+ L L N++ +F + +L EL L NQL LP V LT L LG N++
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 64 MENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LSSLFHLK 122
+ + F L L L + NK++E+ + L +L L L N+L +P L L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162
Query: 123 SLFLGGNPIKTVRNDILQDSKRIISH 148
+L GNP DI+ + H
Sbjct: 163 HAYLFGNPWDCECRDIMYLRNWVADH 188
Score = 50.8 bits (122), Expect = 8e-08
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLPVCTD-CKNLTHLLLGF 58
L+ L LDL N+L LP +F + L EL + N+LT LP + +LTHL L
Sbjct: 87 LTQLTVLDLGTNQL--TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ 144
Query: 59 NKINNMENDYFLTLTKLSLLNLKNN 83
N++ ++ + F L+ L+ L N
Sbjct: 145 NQLKSIPHGAFDRLSSLTHAYLFGN 169
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 80.1 bits (198), Expect = 6e-18
Identities = 53/169 (31%), Positives = 76/169 (44%), Gaps = 10/169 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L++L L L+ N+L S +F + +L EL L NQL LP V NLT+L L N
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCE---- 114
++ ++ F LT L+ L+L N++ + V D L L L L N+L VP
Sbjct: 144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 203
Query: 115 LSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDG 163
L+SL + ++L NP I S+ I H R D
Sbjct: 204 LTSLQY---IWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDS 249
Score = 78.1 bits (193), Expect = 2e-17
Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ + + +++ + S+ + ++ L L N+L + + NLT+L+L N++
Sbjct: 40 LNSIDQIIANNSDI--KSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQL 97
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCEL-SSLF 119
++ N F LT L L L N++ + V D L NL L+L+ N+L +P + L
Sbjct: 98 QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT 157
Query: 120 HLKSLFLGGN 129
+L L L N
Sbjct: 158 NLTELDLSYN 167
Score = 72.0 bits (177), Expect = 4e-15
Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 6/130 (4%)
Query: 6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNME 65
+L + ++ S+ ++ + + + + N+ +L LG NK++++
Sbjct: 22 IKANLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS 79
Query: 66 NDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCEL-SSLFHLKS 123
LT L+ L L N++ + + V D L NL L L +N+L +P + L +L
Sbjct: 80 --ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 124 LFLGGNPIKT 133
L L N +++
Sbjct: 138 LNLAHNQLQS 147
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 81.0 bits (200), Expect = 7e-18
Identities = 28/149 (18%), Positives = 62/149 (41%), Gaps = 10/149 (6%)
Query: 2 LSHLKTLDLSHNKLVSDSLPL--FIDMRSLTELNLS-YNQLTMLP--VCTDCKNLTHLLL 56
L+ +++S N ++ + F ++ L E+ + N L + + NL +LL+
Sbjct: 53 FGDLEKIEISQNDVLE-VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111
Query: 57 GFNKINNMENDYFLTLTKLSLLNLK-NNKISEVSSNV--GDLINLAILDLSDNELTDVPC 113
I ++ + + + + LL+++ N I + N G IL L+ N + ++
Sbjct: 112 SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN 171
Query: 114 ELSSLFHLKSL-FLGGNPIKTVRNDILQD 141
+ L L N ++ + ND+
Sbjct: 172 SAFNGTQLDELNLSDNNNLEELPNDVFHG 200
Score = 76.4 bits (188), Expect = 3e-16
Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 6/134 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYN-QLTMLPVCT---DCKNLTHLLLG 57
L +L+ L +S+ + I L++ N + + + L L
Sbjct: 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162
Query: 58 FNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-L 115
N I + N F L NN + E+ ++V ILD+S + +P L
Sbjct: 163 KNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 222
Query: 116 SSLFHLKSLFLGGN 129
+L L++
Sbjct: 223 ENLKKLRARSTYNL 236
Score = 74.1 bits (182), Expect = 2e-15
Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 7/147 (4%)
Query: 2 LSHLKTLDLSH-NKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
L L + + N L+ + F ++ +L L +S + LP L +
Sbjct: 78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137
Query: 59 N-KINNMENDYFLTLT-KLSLLNLKNNKISEVSSNVGDLINLAILDLSD-NELTDVPCE- 114
N I+ +E + F+ L+ + +L L N I E+ ++ + L L+LSD N L ++P +
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV 197
Query: 115 LSSLFHLKSLFLGGNPIKTVRNDILQD 141
L + I ++ + L++
Sbjct: 198 FHGASGPVILDISRTRIHSLPSYGLEN 224
Score = 72.2 bits (177), Expect = 7e-15
Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 12/151 (7%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQ-LTMLPVCT--DCKNLTHL-LLGF 58
+ L KL F L ++ +S N L ++ + L + +
Sbjct: 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDN-ELTDVP---- 112
N + + + F L L L + N I + + +LD+ DN + +
Sbjct: 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149
Query: 113 CELSSLFHLKSLFLGGNPIKTVRNDILQDSK 143
LS L+L N I+ + N ++
Sbjct: 150 VGLSFE--SVILWLNKNGIQEIHNSAFNGTQ 178
Score = 61.4 bits (149), Expect = 4e-11
Identities = 26/143 (18%), Positives = 53/143 (37%), Gaps = 10/143 (6%)
Query: 6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNKINN 63
+ +K+ +P + R+ EL +L ++ +L + + N +
Sbjct: 12 RVFLCQESKV--TEIPSDLP-RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68
Query: 64 M-ENDYFLTLTKLSLLNL-KNNKISEVSSNV-GDLINLAILDLSDNELTDVPCEL-SSLF 119
+ E D F L KL + + K N + ++ +L NL L +S+ + +P
Sbjct: 69 VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128
Query: 120 HLKSLFLGGNP-IKTVRNDILQD 141
L + N I T+ +
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVG 151
Score = 52.9 bits (127), Expect = 2e-08
Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 5/119 (4%)
Query: 28 SLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISE 87
S +++T +P +N L K+ ++ F L + + N + E
Sbjct: 10 SNRVFLCQESKVTEIPSDLP-RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68
Query: 88 -VSSNV-GDLINLAILDLSD-NELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQDS 142
+ ++V +L L + + N L + E +L +L+ L + IK + + S
Sbjct: 69 VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127
Score = 51.0 bits (122), Expect = 1e-07
Identities = 19/108 (17%), Positives = 32/108 (29%), Gaps = 5/108 (4%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
+ L L+ N + F + N L LP V L +
Sbjct: 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDN 106
+I+++ + L KL + N K L+ L L+
Sbjct: 212 TRIHSLPSYGLENLKKLRARSTYNLKKLPTLEK---LVALMEASLTYP 256
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 81.1 bits (201), Expect = 1e-17
Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 9/135 (6%)
Query: 2 LSHLKTLDLSHNKLV-SDSLPLFIDMRSLTELNLSYNQLT-----MLPVCTDCKNLTHLL 55
S LK L++S N L + + + SL L+LS N ++ + C L HL
Sbjct: 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184
Query: 56 LGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELT-DVPCE 114
+ NKI+ + L L++ +N S +GD L LD+S N+L+ D
Sbjct: 185 ISGNKISG--DVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA 242
Query: 115 LSSLFHLKSLFLGGN 129
+S+ LK L + N
Sbjct: 243 ISTCTELKLLNISSN 257
Score = 76.5 bits (189), Expect = 5e-16
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 13/138 (9%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT-MLPVCTD---CKNLTHLLLG 57
L+ L++L LS++ + + S+ F SLT L+LS N L+ + T C L L +
Sbjct: 76 LTGLESLFLSNSHI-NGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS 134
Query: 58 FNKIN-NMENDYFLTLTKLSLLNLKNNKIS----EVSSNVGDLINLAILDLSDNELT-DV 111
N ++ + L L L +L+L N IS L L +S N+++ DV
Sbjct: 135 SNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV 194
Query: 112 PCELSSLFHLKSLFLGGN 129
+S +L+ L + N
Sbjct: 195 D--VSRCVNLEFLDVSSN 210
Score = 75.7 bits (187), Expect = 9e-16
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFI---DMRSLTELNLSYNQLT-MLPVC-TDCKNLTHLL 55
+ + L TLDLS N S + + +L EL L N T +P ++C L L
Sbjct: 366 LSASLLTLDLSSNNF-SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424
Query: 56 LGFNKINNMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVPC 113
L FN ++ +L+KL L L N + E+ + + L L L N+LT ++P
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484
Query: 114 ELSSLFHLKSLFLGGN 129
LS+ +L + L N
Sbjct: 485 GLSNCTNLNWISLSNN 500
Score = 75.3 bits (186), Expect = 1e-15
Identities = 39/136 (28%), Positives = 56/136 (41%), Gaps = 14/136 (10%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT-MLPVC-TDCKNLTHLLLGFN 59
+L+ LD+S N S +P D +L L++S N+L+ + C L L + N
Sbjct: 199 CVNLEFLDVSSNNF-STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257
Query: 60 KINN---MENDYFLTLTKLSLLNLKNNKIS-EVSSNV-GDLINLAILDLSDNELT-DVPC 113
+ L L L+L NK + E+ + G L LDLS N VP
Sbjct: 258 QFVGPIPPLP-----LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312
Query: 114 ELSSLFHLKSLFLGGN 129
S L+SL L N
Sbjct: 313 FFGSCSLLESLALSSN 328
Score = 74.9 bits (185), Expect = 2e-15
Identities = 40/134 (29%), Positives = 52/134 (38%), Gaps = 8/134 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLT-MLPVCTDCKNLTHLLLGFN 59
S L+ LD+S NKL S I L LN+S NQ +P K+L +L L N
Sbjct: 222 CSALQHLDISGNKL-SGDFSRAISTCTELKLLNISSNQFVGPIPPLP-LKSLQYLSLAEN 279
Query: 60 KIN-NMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELTDV--PCEL 115
K + + L+ L+L N V G L L LS N + L
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 339
Query: 116 SSLFHLKSLFLGGN 129
+ LK L L N
Sbjct: 340 LKMRGLKVLDLSFN 353
Score = 74.2 bits (183), Expect = 3e-15
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 7/142 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLT-MLPVC-TDCKNLTHLLLGF 58
LS L+ L L N L +P + +++L L L +N LT +P ++C NL + L
Sbjct: 441 LSKLRDLKLWLNML-EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVPCELS 116
N++ + L L++L L NN S + + +GD +L LDL+ N +P +
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559
Query: 117 SL-FHLKSLFLGGNPIKTVRND 137
+ + F+ G ++ND
Sbjct: 560 KQSGKIAANFIAGKRYVYIKND 581
Score = 73.8 bits (182), Expect = 4e-15
Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 10/137 (7%)
Query: 2 LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLT-MLP--VCTDCKNLTHLLL 56
S L++L LS N S LP + MR L L+LS+N+ + LP + +L L L
Sbjct: 317 CSLLESLALSSNNF-SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 57 GFNKINNM--ENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVP 112
N + N L L L+NN + ++ + + L L LS N L+ +P
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435
Query: 113 CELSSLFHLKSLFLGGN 129
L SL L+ L L N
Sbjct: 436 SSLGSLSKLRDLKLWLN 452
Score = 69.9 bits (172), Expect = 7e-14
Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 9/136 (6%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDM--RSLTELNLSYNQLT-MLPV---CTDCKNLTHLL 55
+ LK LDLS N+ S LP + SL L+LS N + + L L
Sbjct: 342 MRGLKVLDLSFNEF-SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 56 LGFNKINNMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVPC 113
L N ++L L+L N +S + S++G L L L L N L ++P
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 114 ELSSLFHLKSLFLGGN 129
EL + L++L L N
Sbjct: 461 ELMYVKTLETLILDFN 476
Score = 64.9 bits (159), Expect = 4e-12
Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 10/134 (7%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLT-MLPVCTDCKNLTHLLLGFN 59
L +L L LS+N S ++P + D RSL L+L+ N +P + + N
Sbjct: 513 LENLAILKLSNNSF-SGNIPAELGDCRSLIWLDLNTNLFNGTIPAA--MFKQS-GKIAAN 568
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKIS---EVSSNVGDLINLAILDLSDNELT-DVPCEL 115
I Y + N + S + L +++
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628
Query: 116 SSLFHLKSLFLGGN 129
+ + L + N
Sbjct: 629 DNNGSMMFLDMSYN 642
Score = 59.5 bits (145), Expect = 2e-10
Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 12/139 (8%)
Query: 3 SHLKTLDLSHNKLVSDSLPL---FIDMRSLTELNLSYNQLT-MLPVCTDCKNLTHLLLGF 58
+ ++DLS L + + + L L LS + + + +LT L L
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109
Query: 59 NKINNM--ENDYFLTLTKLSLLNLKNNKISEV--SSNVGDLINLAILDLSDNELT-DVPC 113
N ++ + + L LN+ +N + S L +L +LDLS N ++
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169
Query: 114 EL---SSLFHLKSLFLGGN 129
LK L + GN
Sbjct: 170 GWVLSDGCGELKHLAISGN 188
Score = 53.8 bits (130), Expect = 2e-08
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT--MLPVCTDCKNLTHLLLGFN 59
LS +++ + P F + S+ L++SYN L+ + L L LG N
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666
Query: 60 KIN-----NMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELT 109
I+ + + L L++L+L +NK+ + + L L +DLS+N L+
Sbjct: 667 DISGSIPDEVGD-----LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
Score = 51.4 bits (124), Expect = 1e-07
Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 16/139 (11%)
Query: 2 LSHLKTLDLSHNKLV-SDSLPLFI-DMRSLTELNLSYNQLT-MLPVC-TDCKNLTHLLLG 57
K + N L + + + N++ + ++ L +
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640
Query: 58 FNKI-----NNMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELT-D 110
+N + + + + L +LNL +N IS + VGDL L ILDLS N+L
Sbjct: 641 YNMLSGYIPKEIGS-----MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695
Query: 111 VPCELSSLFHLKSLFLGGN 129
+P +S+L L + L N
Sbjct: 696 IPQAMSALTMLTEIDLSNN 714
Score = 44.9 bits (107), Expect = 1e-05
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 22/108 (20%)
Query: 25 DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK 84
+T ++LS L +GF+ ++ L+LT L L L N+
Sbjct: 48 RDDKVTSIDLSSKPLN---------------VGFSAVS----SSLLSLTGLESLFLSNSH 88
Query: 85 ISEVSSNVGDLINLAILDLSDNELTDV---PCELSSLFHLKSLFLGGN 129
I+ S +L LDLS N L+ L S LK L + N
Sbjct: 89 INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN 136
Score = 41.0 bits (97), Expect = 2e-04
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLT-MLPVC-TDCKNLTHLLLG 57
+ +L L+L HN + S S+P D+R L L+LS N+L +P + LT + L
Sbjct: 654 SMPYLFILNLGHNDI-SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712
Query: 58 FNK 60
N
Sbjct: 713 NNN 715
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 77.8 bits (192), Expect = 1e-17
Identities = 51/162 (31%), Positives = 71/162 (43%), Gaps = 4/162 (2%)
Query: 6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINN 63
LDL N L S +F ++ SLT+L L N+L LP V +LT+L L N++ +
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 64 MENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCE-LSSLFHL 121
+ N F LT+L L L N++ + V D L L L L N+L VP L L
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Query: 122 KSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDG 163
+ ++L NP I S+ I H R D
Sbjct: 151 QYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDS 192
Score = 48.5 bits (116), Expect = 3e-07
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 2 LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLG 57
L+ L L+LS N+L SLP +F + L EL L+ NQL LP V L L L
Sbjct: 75 LTSLTYLNLSTNQL--QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY 132
Query: 58 FNKINNMENDYFLTLTKLSLLNLKNN 83
N++ ++ + F LT L + L +N
Sbjct: 133 QNQLKSVPDGVFDRLTSLQYIWLHDN 158
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 77.3 bits (191), Expect = 2e-17
Identities = 25/136 (18%), Positives = 55/136 (40%), Gaps = 3/136 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
++ L + L++ + L ++ +L ++ T + NL L + +
Sbjct: 43 MNSLTYITLANINV--TDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDV 100
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVS-SNVGDLINLAILDLSDNELTDVPCELSSLFH 120
+ + LT L+LL++ ++ + + + L + +DLS N L +L
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPE 160
Query: 121 LKSLFLGGNPIKTVRN 136
LKSL + + + R
Sbjct: 161 LKSLNIQFDGVHDYRG 176
Score = 76.2 bits (188), Expect = 4e-17
Identities = 22/133 (16%), Positives = 55/133 (41%), Gaps = 7/133 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVC--TDCKNLTHLLLGFN 59
++K L +++ ++ P+ + +L L + +T + + +LT L + +
Sbjct: 65 AHNIKDLTINNIHA-TNYNPIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122
Query: 60 KINNMENDYFLTLTKLSLLNL-KNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSL 118
++ TL K++ ++L N I+++ + L L L++ + + D +
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDF 180
Query: 119 FHLKSLFLGGNPI 131
L L+ I
Sbjct: 181 PKLNQLYAFSQTI 193
Score = 69.2 bits (170), Expect = 1e-14
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 4/108 (3%)
Query: 25 DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK 84
M SLT + L+ +T L N+ L + N L+ L L +
Sbjct: 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKD 99
Query: 85 ISEVS-SNVGDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNP 130
++ N+ L +L +LD+S + D ++++L + S+ L N
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147
Score = 66.9 bits (164), Expect = 1e-13
Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 6/113 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVC--TDCKNLTHLLLGFN 59
LS+L+ L + + SD +P + SLT L++S++ + + + L +N
Sbjct: 87 LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146
Query: 60 -KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDV 111
I ++ TL +L LN++ + + + + D L L +
Sbjct: 147 GAITDIMP--LKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGGK 196
Score = 48.8 bits (117), Expect = 2e-07
Identities = 14/86 (16%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 49 KNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNEL 108
L G ++ N + L+ + L N ++++ + + N+ L +++
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHA 78
Query: 109 TDVPCELSSLFHLKSLFLGGNPIKTV 134
T+ +S L +L+ L + G + +
Sbjct: 79 TNYN-PISGLSNLERLRIMGKDVTSD 103
Score = 47.6 bits (114), Expect = 6e-07
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L + ++DLS+N ++D +PL + L LN+ ++ + D L L I
Sbjct: 135 LPKVNSIDLSYNGAITDIMPL-KTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTI 193
Query: 62 NNME 65
+
Sbjct: 194 GGKK 197
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 80.6 bits (198), Expect = 2e-17
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 4/130 (3%)
Query: 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINN 63
LD +K + ++ L ++ + L+L++ LT+L +THL L N++
Sbjct: 418 RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA 477
Query: 64 MENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPC--ELSSLFHL 121
+ L L +L +N + V V +L L L L +N L L S L
Sbjct: 478 LPPA-LAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535
Query: 122 KSLFLGGNPI 131
L L GN +
Sbjct: 536 VLLNLQGNSL 545
Score = 74.8 bits (183), Expect = 2e-15
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 7/121 (5%)
Query: 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVC-TDCKNLTHLLLGFNKIN 62
++ L L+H L L + +T L+LS+N+L LP + L L N +
Sbjct: 442 DVRVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 499
Query: 63 NMENDYFLTLTKLSLLNLKNNKISEVSS--NVGDLINLAILDLSDNELTDVPCELSSLFH 120
N++ L +L L L NN++ + ++ + L +L+L N L L
Sbjct: 500 NVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 557
Query: 121 L 121
+
Sbjct: 558 M 558
Score = 70.2 bits (171), Expect = 6e-14
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L + LDLSHN+L P +R L L S N L + + L LLL N++
Sbjct: 462 LLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRL 520
Query: 62 NNMEN-DYFLTLTKLSLLNLKNNKISEVSSNVGDLINL 98
++ +L LLNL+ N + + L +
Sbjct: 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558
Score = 54.8 bits (131), Expect = 9e-09
Identities = 22/145 (15%), Positives = 52/145 (35%), Gaps = 10/145 (6%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP-VCTDCKNLT-----HL 54
+ L++ S +L + ++ L + + L L
Sbjct: 360 KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 419
Query: 55 LLGFNKINNMENDYFLTL---TKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDV 111
+ + + + + +L+L + ++ + ++ L+ + LDLS N L +
Sbjct: 420 AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRAL 478
Query: 112 PCELSSLFHLKSLFLGGNPIKTVRN 136
P L++L L+ L N ++ V
Sbjct: 479 PPALAALRCLEVLQASDNALENVDG 503
Score = 40.5 bits (94), Expect = 4e-04
Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 4/138 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L +LS K + L EL N+ +L + + L LL +
Sbjct: 348 DEQLFRCELSVEKSTVLQ-SELESCKELQELEP-ENKWCLLTIILLMRALDPLLYEKETL 405
Query: 62 NNMENDYFLT-LTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
+ + L +L++ + E S + ++ +L L+ +LT + L L
Sbjct: 406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC-HLEQLLL 464
Query: 121 LKSLFLGGNPIKTVRNDI 138
+ L L N ++ + +
Sbjct: 465 VTHLDLSHNRLRALPPAL 482
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 79.7 bits (197), Expect = 3e-17
Identities = 34/159 (21%), Positives = 57/159 (35%), Gaps = 12/159 (7%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
S LK +D+ +N L L SL + NQL LP + LT + N +
Sbjct: 152 SSFLKIIDVDNNSLKK----LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL 207
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
+ L + NN + E+ + +L L + +N L +P S L
Sbjct: 208 KKL----PDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDLPPS---L 259
Query: 122 KSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQN 160
++L + N + + + +S S L N
Sbjct: 260 EALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN 298
Score = 72.7 bits (179), Expect = 8e-15
Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 22/151 (14%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L L + +N L L SL + N L LP + LT + N +
Sbjct: 194 LPFLTAIYADNNSLKK----LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL 249
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLF-- 119
+ + L LN+++N ++++ L L + + + L+++P L L
Sbjct: 250 KTLPD----LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 305
Query: 120 ------------HLKSLFLGGNPIKTVRNDI 138
L+ L + N + +
Sbjct: 306 SNEIRSLCDLPPSLEELNVSNNKLIELPALP 336
Score = 68.5 bits (168), Expect = 2e-13
Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 14/134 (10%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
+ L+L++ L SLP L L S N LT LP ++L LL+ N
Sbjct: 69 LDRQAHELELNNLGL--SSLPELP--PHLESLVASCNSLTELP--ELPQSLKSLLVDNNN 122
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
+ + + L L + NN++ ++ + + L I+D+ +N L +P
Sbjct: 123 LKALSD----LPPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLP---DLPPS 174
Query: 121 LKSLFLGGNPIKTV 134
L+ + G N ++ +
Sbjct: 175 LEFIAAGNNQLEEL 188
Score = 63.1 bits (154), Expect = 1e-11
Identities = 33/149 (22%), Positives = 51/149 (34%), Gaps = 29/149 (19%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L LD+S N L +L LN S N++ L +L L + NK+
Sbjct: 276 PQSLTFLDVSENIF--SGLSELPP--NLYYLNASSNEIRSLC--DLPPSLEELNVSNNKL 329
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSL--- 118
+ +L L N ++EV NL L + N L + P S+
Sbjct: 330 IELPA----LPPRLERLIASFNHLAEVPELPQ---NLKQLHVEYNPLREFPDIPESVEDL 382
Query: 119 -------------FHLKSLFLGGNPIKTV 134
+LK L + NP++
Sbjct: 383 RMNSHLAEVPELPQNLKQLHVETNPLREF 411
Score = 58.9 bits (143), Expect = 3e-10
Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 25/146 (17%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ L++S+NKL+ LP L L S+N L +P +NL L + +N +
Sbjct: 316 PPSLEELNVSNNKLIE--LPALP--PRLERLIASFNHLAEVP--ELPQNLKQLHVEYNPL 369
Query: 62 ---------------NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDN 106
N+ + L L+++ N + E + + L ++
Sbjct: 370 REFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVED---LRMNSE 426
Query: 107 ELTDVP-CELSSLFHLKSLFLGGNPI 131
+ D + L+ +
Sbjct: 427 RVVDPYEFAHETTDKLEDDVFEHHHH 452
Score = 54.2 bits (131), Expect = 1e-08
Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 17/125 (13%)
Query: 24 IDMRSLTELNLSYNQLTMLPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSL----- 77
+ L E + LT +PV + K+ T +++ ++++
Sbjct: 8 VSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67
Query: 78 --------LNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGN 129
L L N +S + +L L S N LT++P SL L
Sbjct: 68 CLDRQAHELELNNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLK 124
Query: 130 PIKTV 134
+ +
Sbjct: 125 ALSDL 129
Score = 53.8 bits (130), Expect = 2e-08
Identities = 20/149 (13%), Positives = 46/149 (30%), Gaps = 29/149 (19%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
+ + ++ ++ P + R + L + L L +
Sbjct: 33 VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL---------DRQAHELELNNLGL 83
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLF-- 119
+++ L L N ++E+ L +L + + + L+D+P L L
Sbjct: 84 SSLPEL----PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVS 139
Query: 120 --------------HLKSLFLGGNPIKTV 134
LK + + N +K +
Sbjct: 140 NNQLEKLPELQNSSFLKIIDVDNNSLKKL 168
Score = 49.2 bits (118), Expect = 6e-07
Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 21/102 (20%)
Query: 2 LSHLKTLDLSHNKLVS-----------------DSLPLFIDMRSLTELNLSYNQLTMLPV 44
+LK L + +N L +P ++L +L++ N L P
Sbjct: 356 PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELP--QNLKQLHVETNPLREFPD 413
Query: 45 CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKIS 86
+++ L + ++ + T KL +++
Sbjct: 414 I--PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
Score = 32.3 bits (74), Expect = 0.16
Identities = 6/67 (8%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Query: 70 LTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELT-DVPCELSSLFHLKSLFLGG 128
++ T L ++ ++E+ ++ + + +E + P + L
Sbjct: 8 VSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67
Query: 129 NPIKTVR 135
+
Sbjct: 68 CLDRQAH 74
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 78.0 bits (192), Expect = 1e-16
Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 28/157 (17%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDC-KNLTHLLLGFNK 60
S L+ + N ++ L L L N L KN++ L
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411
Query: 61 INNMENDYFLTLT--------------------------KLSLLNLKNNKISEVSSNVGD 94
+N++ + + K+ +L+L NN+I + +V
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTH 471
Query: 95 LINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNP 130
L L L+++ N+L VP L L+ ++L NP
Sbjct: 472 LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508
Score = 72.2 bits (177), Expect = 1e-14
Identities = 52/230 (22%), Positives = 93/230 (40%), Gaps = 7/230 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
LS L+ L LSHN++ S +F+ + L L++S+N+L + C +L HL L FN
Sbjct: 75 LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS-CCPMASLRHLDLSFNDF 133
Query: 62 NNM-ENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAI--LDLSDNELTDVPCELSSL 118
+ + F LTKL+ L L K ++ ++L+ LDL + E +
Sbjct: 134 DVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQI 193
Query: 119 FHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINID 178
+ L L +P + S + H++ S + + +N E T +
Sbjct: 194 PNTTVLHLVFHPNSLFSV-QVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252
Query: 179 KYKLDRTKTL--TLCKVINIPESVYMRGMSSQECTIEINIDKYKLDRTKT 226
L +T K+ + ++ TI ID+ + ++T
Sbjct: 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302
Score = 69.1 bits (169), Expect = 1e-13
Identities = 36/168 (21%), Positives = 61/168 (36%), Gaps = 9/168 (5%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNK 60
K L LS N + +P + L L LS+N++ L V ++L +L + N+
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEV--SSNVGDLINLAILDLSDNELTDVPCELSSL 118
+ N+ + L L+L N + G+L L L LS + + +
Sbjct: 112 LQNIS---CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168
Query: 119 FHLKSLFLG--GNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGG 164
HL + L IK + LQ + H+ V+
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS 216
Score = 64.1 bits (156), Expect = 6e-12
Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 7/135 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV-CTD-CKNLTHLLLGFN 59
L L + + + L+ + LS + + + C + T L N
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP-----CE 114
+ TL +L L L+ N + N++ L+ D L +
Sbjct: 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423
Query: 115 LSSLFHLKSLFLGGN 129
+ + L L N
Sbjct: 424 CAWAESILVLNLSSN 438
Score = 39.5 bits (92), Expect = 8e-04
Identities = 20/147 (13%), Positives = 45/147 (30%), Gaps = 19/147 (12%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMR------------SLTELNLSYNQLTMLPVCTDCK 49
++ L L LS+ KL ++ + +L + ++ L +
Sbjct: 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276
Query: 50 NLTHLLLGFNKINNMENDYFLTLTKLSL-----LNLKNNKISEVSSNVGD-LINLAILDL 103
+ +L + I + T ++ +L ++KN + + I L
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336
Query: 104 SDNELTDVPCE-LSSLFHLKSLFLGGN 129
S ++ + S L N
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQN 363
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 75.3 bits (185), Expect = 5e-16
Identities = 34/140 (24%), Positives = 51/140 (36%), Gaps = 13/140 (9%)
Query: 2 LSHLKTLDLSHNKLVSD----SLPLFIDMRSLTELNLSYNQLTMLPVC-----TDCKNLT 52
L TLDLS N + + S + +L L L + L
Sbjct: 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ 231
Query: 53 HLLLGFNKINNMEND-YFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDV 111
L L N + + ++L+ LNL + +V + L++LDLS N L
Sbjct: 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA--KLSVLDLSYNRLDRN 289
Query: 112 PCELSSLFHLKSLFLGGNPI 131
P L + +L L GNP
Sbjct: 290 P-SPDELPQVGNLSLKGNPF 308
Score = 64.1 bits (156), Expect = 4e-12
Identities = 28/115 (24%), Positives = 42/115 (36%), Gaps = 10/115 (8%)
Query: 2 LSHLKTLDLSHNKLVSDSLP---LFIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLL 55
L+ L L + + + S L L L+LS+N L C L L
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259
Query: 56 LGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTD 110
L F + + KLS+L+L N++ S +L + L L N D
Sbjct: 260 LSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310
Score = 53.4 bits (128), Expect = 2e-08
Identities = 28/157 (17%), Positives = 46/157 (29%), Gaps = 17/157 (10%)
Query: 2 LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLPVCTD------CKNLTH 53
+S L+ L L + ++ + P L L LNL L
Sbjct: 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153
Query: 54 LLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-----GDLINLAILDLSDNEL 108
L + N + LS L+L +N + L +L L + +
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213
Query: 109 TDVPCELSSLFH----LKSLFLGGNPIKTVRNDILQD 141
S+L L+ L L N ++ D
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250
Score = 49.9 bits (119), Expect = 2e-07
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
S L +L+LS L L L+ L+LSYN+L P + + +L L N
Sbjct: 251 WPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNP 307
Query: 61 INNME 65
+ E
Sbjct: 308 FLDSE 312
Score = 32.2 bits (73), Expect = 0.15
Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 11/102 (10%)
Query: 50 NLTHLLLGFNKINN------MENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDL 103
+L L + +I + + L +L+L NL+ + +L IL+L
Sbjct: 69 SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128
Query: 104 SDNELTDVPCELSSLF-----HLKSLFLGGNPIKTVRNDILQ 140
+ L+ L LK L + + ++
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 72.7 bits (179), Expect = 2e-15
Identities = 24/152 (15%), Positives = 53/152 (34%), Gaps = 17/152 (11%)
Query: 2 LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHL----L 55
LS + +++ + + ++ + ++ L L + L M P T + +
Sbjct: 79 LSKVTHIEIRNTRNLT-YIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI 137
Query: 56 LGFNKINNMENDYFLTLTKLSL-LNLKNNKISEVSSNVGDLINLAILDLSDN-ELTDVPC 113
+ ++ + F L +L L L NN + V + L + L+ N LT +
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVID- 196
Query: 114 ELSSLFH-----LKSLFLGGNPIKTVRNDILQ 140
F L + + + + L+
Sbjct: 197 --KDAFGGVYSGPSLLDVSQTSVTALPSKGLE 226
Score = 67.0 bits (164), Expect = 2e-13
Identities = 28/154 (18%), Positives = 61/154 (39%), Gaps = 13/154 (8%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYN-QLTMLPVCT--DCKNLTHLLLG 57
+ +TL L L + F ++ +++ + +S + L L + + +TH+ +
Sbjct: 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88
Query: 58 FNK-INNMENDYFLTLTKLSLLNLKNNKISEVS--SNVGDLINLAILDLSDN-ELTDVP- 112
+ + ++ D L L L + N + + V IL+++DN +T +P
Sbjct: 89 NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148
Query: 113 ---CELSSLFHLKSLFLGGNPIKTVRNDILQDSK 143
L + +L L N +V+ +K
Sbjct: 149 NAFQGLCNE--TLTLKLYNNGFTSVQGYAFNGTK 180
Score = 66.2 bits (162), Expect = 3e-13
Identities = 23/150 (15%), Positives = 53/150 (35%), Gaps = 11/150 (7%)
Query: 2 LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQ-LTMLP--VCTDCKNLTHLLL 56
L ++ + +S + + L F ++ +T + + + LT + + L L +
Sbjct: 54 LPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112
Query: 57 GFNKINNMENDYFLT-LTKLSLLNL-KNNKISEVSSNV-GDLIN-LAILDLSDNELTDVP 112
+ + + +L + N ++ + N L N L L +N T V
Sbjct: 113 FNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ 172
Query: 113 CELSSLFHLKSLFLGGNP-IKTVRNDILQD 141
+ L +++L N + + D
Sbjct: 173 GYAFNGTKLDAVYLNKNKYLTVIDKDAFGG 202
Score = 62.3 bits (152), Expect = 9e-12
Identities = 22/147 (14%), Positives = 58/147 (39%), Gaps = 12/147 (8%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN- 59
+ ++ + +P S L L L +P + N++ + + +
Sbjct: 11 HQEEDFRVTCKDI--QRIPSL--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66
Query: 60 KINNMENDYFLTLTKLSLLNLKNNK-ISEVSSNV-GDLINLAILDLSDNELTDVP--CEL 115
+ +E+ F L+K++ + ++N + ++ + + +L L L + + L P ++
Sbjct: 67 TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV 126
Query: 116 SSLFHLKSLFLGGNP-IKTVRNDILQD 141
S L + NP + ++ + Q
Sbjct: 127 YSTDIFFILEITDNPYMTSIPVNAFQG 153
Score = 36.5 bits (85), Expect = 0.004
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQ-LTMLPVCT---DCKNLTHLLL 56
+ + TL L +N S F + L + L+ N+ LT++ + L +
Sbjct: 154 LCNETLTLKLYNNGFTSVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212
Query: 57 GFNKINNMENDYFLTLTKLSLLNL 80
+ + + L +L N
Sbjct: 213 SQTSVTALPSKGLEHLKELIARNT 236
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 70.9 bits (174), Expect = 4e-15
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 8 LDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMEND 67
L + L +++ L LS N + + + +NL L LG N I +EN
Sbjct: 30 LHGMIPPIEKMDATLS-TLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL 88
Query: 68 YFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPC--ELSSLFHLKSLF 125
+ L L + N+I+ +S + L+NL +L +S+N++T+ +L++L L+ L
Sbjct: 89 DAVA-DTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146
Query: 126 LGGNPI 131
L GNP+
Sbjct: 147 LAGNPL 152
Score = 59.7 bits (145), Expect = 4e-11
Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 4/109 (3%)
Query: 29 LTELNLSYNQLTMLPVC-TDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISE 87
EL+ + + + K HL L N I + + + L +L+L N I +
Sbjct: 27 KVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKK 84
Query: 88 VSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRN 136
+ + L L +S N++ + + L +L+ L++ N I
Sbjct: 85 IENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGE 132
Score = 57.0 bits (138), Expect = 4e-10
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
+ +L+ L L N + L +L EL +SYNQ+ L NL L + NK
Sbjct: 68 GMENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNK 126
Query: 61 INNMEN-DYFLTLTKLSLLNLKNNKISE 87
I N D L KL L L N +
Sbjct: 127 ITNWGEIDKLAALDKLEDLLLAGNPLYN 154
Score = 30.4 bits (69), Expect = 0.43
Identities = 13/65 (20%), Positives = 22/65 (33%)
Query: 72 LTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPI 131
+ K + + E S V L + + LS+L K L L N I
Sbjct: 1 MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI 60
Query: 132 KTVRN 136
+ + +
Sbjct: 61 EKISS 65
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 70.0 bits (172), Expect = 6e-15
Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 9/107 (8%)
Query: 30 TELNLSYNQLTMLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEV 88
TEL L NQ T++P ++ K+LT + L N+I+ + N F +T+L L L N++ +
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 89 SSNVGD-LINLAILDLSDNELTDVPC----ELSSLFHLKSLFLGGNP 130
D L +L +L L N+++ VP +LS+L H L +G NP
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH---LAIGANP 137
Score = 55.4 bits (134), Expect = 1e-09
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
HL +DLS+N++ + S F +M L L LSYN+L +P K+L L L N
Sbjct: 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112
Query: 60 KINNMENDYFLTLTKLSLLNLKNN 83
I+ + F L+ LS L + N
Sbjct: 113 DISVVPEGAFNDLSALSHLAIGAN 136
Score = 30.3 bits (69), Expect = 0.38
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 100 ILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKT 133
L L N+ T VP ELS+ HL + L N I T
Sbjct: 35 ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST 68
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 72.4 bits (178), Expect = 9e-15
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ L +LD ++ + + + LT+L + N +T L + + NLT+L NK+
Sbjct: 41 LATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNNITTLDL-SQNTNLTYLACDSNKL 97
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
N++ LTKL+ LN NK++++ +V L L+ + N LT++ +S L
Sbjct: 98 TNLD---VTPLTKLTYLNCDTNKLTKL--DVSQNPLLTYLNCARNTLTEID--VSHNTQL 150
Query: 122 KSLFLGGNPIKT 133
L N T
Sbjct: 151 TELDCHLNKKIT 162
Score = 69.7 bits (171), Expect = 8e-14
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 10/133 (7%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L L+ + N L + LTEL+ N+ T LT L FNKI
Sbjct: 126 NPLLTYLNCARNTLTEIDVSHNT---QLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKI 182
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
++ L+ LN N I+++ ++ I L LD S N+LT++ ++ L L
Sbjct: 183 TELD---VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQL 235
Query: 122 KSLFLGGNPIKTV 134
NP+ +
Sbjct: 236 TYFDCSVNPLTEL 248
Score = 69.3 bits (170), Expect = 9e-14
Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 7/130 (5%)
Query: 5 LKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNM 64
+ + ++ + + +LT L+ + +T + LT L+ N I +
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL 79
Query: 65 ENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSL 124
+ T L+ L +NK++ + +V L L L+ N+LT + +S L L
Sbjct: 80 D---LSQNTNLTYLACDSNKLTNL--DVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYL 132
Query: 125 FLGGNPIKTV 134
N + +
Sbjct: 133 NCARNTLTEI 142
Score = 69.3 bits (170), Expect = 1e-13
Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 10/133 (7%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L LD S NKL + + LT + S N LT L V T LT L +
Sbjct: 211 NIQLTFLDCSSNKL--TEID-VTPLTQLTYFDCSVNPLTELDVST-LSKLTTLHCIQTDL 266
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
++ + L + K +V+ N L +LD +T++ LS L
Sbjct: 267 LEIDLTHNTQLIYFQAEGCRKIKELDVTHN----TQLYLLDCQAAGITELD--LSQNPKL 320
Query: 122 KSLFLGGNPIKTV 134
L+L + +
Sbjct: 321 VYLYLNNTELTEL 333
Score = 67.4 bits (165), Expect = 4e-13
Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 10/133 (7%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
++L L NKL + + + LT LN N+LT L V + LT+L N +
Sbjct: 84 NTNLTYLACDSNKLTNLDVT---PLTKLTYLNCDTNKLTKLDV-SQNPLLTYLNCARNTL 139
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
++ T+L+ L+ NK +V L LD S N++T++ +S L
Sbjct: 140 TEID---VSHNTQLTELDCHLNKKIT-KLDVTPQTQLTTLDCSFNKITELD--VSQNKLL 193
Query: 122 KSLFLGGNPIKTV 134
L N I +
Sbjct: 194 NRLNCDTNNITKL 206
Score = 58.9 bits (143), Expect = 3e-10
Identities = 27/143 (18%), Positives = 48/143 (33%), Gaps = 13/143 (9%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
+ L + + L L+ +T L + + L +L L ++
Sbjct: 274 NTQLIYFQAEGCRKIK--ELDVTHNTQLYLLDCQAAGITELDL-SQNPKLVYLYLNNTEL 330
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE------L 115
++ TKL L+ N I + SS VG + L ++ + +P E L
Sbjct: 331 TELD---VSHNTKLKSLSCVNAHIQDFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSL 386
Query: 116 SSLFHLKSLFLGGNPIKTVRNDI 138
+ L GNP+ D
Sbjct: 387 TIAVSPDLLDQFGNPMNIEPGDG 409
Score = 48.9 bits (117), Expect = 6e-07
Identities = 16/123 (13%), Positives = 36/123 (29%), Gaps = 9/123 (7%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L L L++ +L L + L L+ + L + +
Sbjct: 317 NPKLVYLYLNNTELTE--LDV-SHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQT 373
Query: 62 NNMENDYFLTL-----TKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELS 116
M + LL+ N ++ + G + + A ++ L+ ++
Sbjct: 374 ITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGG-VYDQATNTITWENLSTDNPAVT 432
Query: 117 SLF 119
F
Sbjct: 433 YTF 435
Score = 47.4 bits (113), Expect = 2e-06
Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 49 KNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNEL 108
N + ++ + L L+ L+ N+ I+++ + + L L L + N +
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM-TGIEKLTGLTKLICTSNNI 76
Query: 109 TDVPCELSSLFHLKSLFLGGNPIKTV 134
T + LS +L L N + +
Sbjct: 77 TTLD--LSQNTNLTYLACDSNKLTNL 100
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 68.5 bits (168), Expect = 3e-14
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 30 TELNLSYNQLTMLP---VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKIS 86
TEL L+ N+L + + +L L L N++ +E + F + + L L NKI
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 87 EVSSNVGD-LINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNP 130
E+S+ + L L L+L DN+++ V L L SL L NP
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137
Score = 54.6 bits (132), Expect = 2e-09
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 2 LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLG 57
L HL L+L N+L + F + EL L N++ + + L L L
Sbjct: 53 LPHLVKLELKRNQLTG--IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 58 FNKINNMENDYFLTLTKLSLLNLKNN 83
N+I+ + F L L+ LNL +N
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASN 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 67.8 bits (166), Expect = 4e-14
Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 8/128 (6%)
Query: 8 LDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNKINNMEN 66
+ L+ L+ + + EL+L ++ ++ + + N+I ++
Sbjct: 2 VKLTAE-LIEQAAQY-TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG 59
Query: 67 DYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVP--CELSSLFHLKS 123
F L +L L + NN+I + + L +L L L++N L ++ L+SL L
Sbjct: 60 --FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 117
Query: 124 LFLGGNPI 131
L + NP+
Sbjct: 118 LCILRNPV 125
Score = 65.1 bits (159), Expect = 3e-13
Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 5/135 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
+ LDL K+ L + ++ S N++ L + L LL+ N+I
Sbjct: 18 AVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRI 76
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVS--SNVGDLINLAILDLSDNELTDVP-CELSSL 118
+ L L+ L L NN + E+ + L +L L + N +T+ L +
Sbjct: 77 CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVI 136
Query: 119 FHLKSL-FLGGNPIK 132
+ + + L +K
Sbjct: 137 YKVPQVRVLDFQKVK 151
Score = 34.2 bits (79), Expect = 0.016
Identities = 8/59 (13%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 78 LNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRN 136
+ L I + ++ + + LDL ++ + ++L ++ N I+ +
Sbjct: 2 VKLTAELIEQ-AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG 59
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 64.4 bits (157), Expect = 5e-13
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLP-LFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
+ ++ L L + K + L + +L L+L L + L L L N+
Sbjct: 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENR 82
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSS--NVGDLINLAILDLSDNELTDVP 112
I + L L+ LNL NK+ ++S+ + L L LDL + E+T++
Sbjct: 83 IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136
Score = 61.7 bits (150), Expect = 5e-12
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 5/115 (4%)
Query: 25 DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK 84
+R L N N + + + NL L L + ++ N L KL L L N+
Sbjct: 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELSENR 82
Query: 85 ISEVSSNVGD-LINLAILDLSDNELTDVP--CELSSLFHLKSLFLGGNPIKTVRN 136
I + + L NL L+LS N+L D+ L L LKSL L + + +
Sbjct: 83 IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137
Score = 57.1 bits (138), Expect = 2e-10
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 9/120 (7%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
+L+ L L + L S+ + L +L LS N++ + NLTHL L
Sbjct: 47 EFVNLEFLSLINVGL--ISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104
Query: 59 NKINNMEN-DYFLTLTKLSLLNLKNNKISEVSSNVGDLI----NLAILDLSDNELTDVPC 113
NK+ ++ + L L L+L N +++ ++ + L LD D E + P
Sbjct: 105 NKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164
Score = 42.8 bits (101), Expect = 2e-05
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 64 MENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKS 123
+ N + +L L N K+N ++ + +NL L L + L V L L LK
Sbjct: 18 LRNRTPAAVRELVLDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLISVSN-LPKLPKLKK 75
Query: 124 LFLGGNPIKTVRNDILQ 140
L L N I + + +
Sbjct: 76 LELSENRIFGGLDMLAE 92
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 63.9 bits (156), Expect = 5e-13
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLP-LFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
S +K L L +++ L L + L L+ LT + L L L N+
Sbjct: 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNR 75
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSS--NVGDLINLAILDLSDNELTDVP 112
++ L+ LNL NKI ++S+ + L NL LDL + E+T++
Sbjct: 76 VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129
Score = 47.0 bits (112), Expect = 5e-07
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 47 DCKNLTHLLLGFNKINNMENDYFL-TLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSD 105
++ L+L ++ N + + +L L+ N ++ ++ N+ L L L+LSD
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA-NLPKLNKLKKLELSD 73
Query: 106 NELTDV-PCELSSLFHLKSLFLGGNPIK 132
N ++ +L L L GN IK
Sbjct: 74 NRVSGGLEVLAEKCPNLTHLNLSGNKIK 101
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 65.6 bits (161), Expect = 1e-12
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 5/132 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFI-DMRSL-TELNLSYNQLT-MLPVCTDCKNLTHLLLGF 58
L +L + N++ S ++P L T + +S N+LT +P NL + L
Sbjct: 148 LPNLVGITFDGNRI-SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELT-DVPCELSS 117
N + + F + ++L N ++ VG NL LDL +N + +P L+
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266
Query: 118 LFHLKSLFLGGN 129
L L SL + N
Sbjct: 267 LKFLHSLNVSFN 278
Score = 62.2 bits (152), Expect = 2e-11
Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 16/138 (11%)
Query: 2 LSHLKT-LDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT-MLPVC-TDCKNLTHLLLGF 58
S L T + +S N+L + +P +L ++LS N L V KN + L
Sbjct: 172 FSKLFTSMTISRNRL-TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230
Query: 59 NKIN----NMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVP 112
N + + L+ L+L+NN+I + + L L L++S N L ++P
Sbjct: 231 NSLAFDLGKVGL-----SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Query: 113 CELSSLFHLKSLFLGGNP 130
+ +L N
Sbjct: 286 -QGGNLQRFDVSAYANNK 302
Score = 60.6 bits (148), Expect = 5e-11
Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 8/136 (5%)
Query: 2 LSHLKTLDLSHNKLV-SDSLPLFI-DMRSLTELNLS-YNQLT-MLPVC-TDCKNLTHLLL 56
+ LDLS L +P + ++ L L + N L +P L +L +
Sbjct: 49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108
Query: 57 GFNKINNMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVPCE 114
++ D+ + L L+ N +S + ++ L NL + N ++ +P
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168
Query: 115 LSSLFHL-KSLFLGGN 129
S L S+ + N
Sbjct: 169 YGSFSKLFTSMTISRN 184
Score = 27.9 bits (63), Expect = 3.0
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 90 SNVGDLINLAILDLSDNELT---DVPCELSSLFHLKSLFLGGNP 130
+ LDLS L +P L++L +L L++GG
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN 87
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 58.8 bits (143), Expect = 5e-11
Identities = 44/146 (30%), Positives = 63/146 (43%), Gaps = 26/146 (17%)
Query: 6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLG-FNKINNM 64
L+L NKL S +F + LT+L+LS NQ+ LP G F+K
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD------------GVFDK---- 74
Query: 65 ENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCE-LSSLFHLK 122
LTKL++L L NK+ + + V D L L L L N+L VP L L+
Sbjct: 75 -------LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ 127
Query: 123 SLFLGGNPIKTVRNDILQDSKRIISH 148
++L NP I S+ + +
Sbjct: 128 KIWLHTNPWDCSCPRIDYLSRWLNKN 153
Score = 49.6 bits (119), Expect = 1e-07
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 2 LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLG 57
L+ L L LS N++ SLP +F + LT L L N+L LP V L L L
Sbjct: 51 LTQLTKLSLSQNQIQ--SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108
Query: 58 FNKINNMENDYFLTLTKLSLLNLKNN 83
N++ ++ + F LT L + L N
Sbjct: 109 TNQLKSVPDGIFDRLTSLQKIWLHTN 134
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 60.5 bits (146), Expect = 8e-11
Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 22/121 (18%)
Query: 12 HNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLT 71
DSL +LTEL + + ++E
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQ---------------------QHLQHLELRDLRG 54
Query: 72 LTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNP 130
L +L L + + + V+ + L+ L+LS N L + + L+ L L GNP
Sbjct: 55 LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNP 114
Query: 131 I 131
+
Sbjct: 115 L 115
Score = 56.3 bits (135), Expect = 2e-09
Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 25/110 (22%)
Query: 2 LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFN 59
+L L + + + + L + L L + + L +
Sbjct: 30 AENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVA---------------- 72
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELT 109
D F +LS LNL N + +S ++L L LS N L
Sbjct: 73 ------PDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
Score = 44.3 bits (104), Expect = 2e-05
Identities = 17/121 (14%), Positives = 37/121 (30%), Gaps = 5/121 (4%)
Query: 43 PVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK-ISEVSSNV-GDLINLAI 100
C + L + + + L+ L ++N + + + L L
Sbjct: 3 DACC-PHGSSGLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60
Query: 101 LDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQ 159
L + + L V + L L L N ++++ +Q + + L C
Sbjct: 61 LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCA 120
Query: 160 N 160
Sbjct: 121 L 121
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 58.2 bits (141), Expect = 5e-10
Identities = 34/164 (20%), Positives = 53/164 (32%), Gaps = 34/164 (20%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDM----RSLTELNLSYNQLT---------MLPVCTD-- 47
L T+ LS N + ID L L L N L L
Sbjct: 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNK 153
Query: 48 ----CKNLTHLLLGFNKINN--MEN--DYFLTLTKLSLLNLKNNKISE--VSSNVGDLI- 96
L ++ G N++ N M+ F + L + + N I + + + +
Sbjct: 154 KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA 213
Query: 97 ---NLAILDLSDNELTDVPCE-----LSSLFHLKSLFLGGNPIK 132
L +LDL DN T + L S +L+ L L +
Sbjct: 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257
Score = 53.9 bits (130), Expect = 1e-08
Identities = 29/157 (18%), Positives = 47/157 (29%), Gaps = 28/157 (17%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDM----RSLTELNLSYNQLTMLPVCT-------DCKNL 51
L+++ N+L + S+ + R L + + N + + C+ L
Sbjct: 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218
Query: 52 THLLLGFNKINN--MEN--DYFLTLTKLSLLNLKNNKIS-----EVSSNVGDLIN--LAI 100
L L N + + L L L + +S V L N L
Sbjct: 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT 278
Query: 101 LDLSDNELTDVPCEL------SSLFHLKSLFLGGNPI 131
L L NE+ + L L L GN
Sbjct: 279 LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315
Score = 52.4 bits (126), Expect = 4e-08
Identities = 22/145 (15%), Positives = 41/145 (28%), Gaps = 34/145 (23%)
Query: 5 LKTLDLSHNKLVSDSLPLFID----MRSLTELNLSYNQLT---------MLPVCTDCKNL 51
++ L + + ++ S+ E+ LS N + + +L
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK---DL 62
Query: 52 THLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDV 111
++++ L L L L + LSDN
Sbjct: 63 EIAEFSDIFTGRVKDEIPEALRLLLQA-LLKCP------------KLHTVRLSDNAFGPT 109
Query: 112 PCE-----LSSLFHLKSLFLGGNPI 131
E LS L+ L+L N +
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGL 134
Score = 46.6 bits (111), Expect = 3e-06
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 35/137 (25%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFI-----DMRSLTELNLSYNQLT---------MLPVCTDC 48
L T+ + N + + + + + L L+L N T L
Sbjct: 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP-- 244
Query: 49 KNLTHLLLGFNKINN---------MENDYFLTLTKLSLLNLKNNKISE------VSSNVG 93
NL L L ++ + L L L+ N+I +
Sbjct: 245 -NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT---LRLQYNEIELDAVRTLKTVIDE 300
Query: 94 DLINLAILDLSDNELTD 110
+ +L L+L+ N ++
Sbjct: 301 KMPDLLFLELNGNRFSE 317
Score = 46.2 bits (110), Expect = 4e-06
Identities = 25/168 (14%), Positives = 46/168 (27%), Gaps = 39/168 (23%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDM----RSLTELNLSYNQL------------TMLPVCT 46
+K + LS N + +++ + + L S +L
Sbjct: 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 91
Query: 47 DCKNLTHLLLGFNKINNMENDYFLTL----TKLSLLNLKNNKISE--------------V 88
C L + L N + + T L L L NN + V
Sbjct: 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV 151
Query: 89 SSNVGDLINLAILDLSDNELTDVPCE-----LSSLFHLKSLFLGGNPI 131
+ + L + N L + + S L ++ + N I
Sbjct: 152 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI 199
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 53.4 bits (129), Expect = 4e-09
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 13/128 (10%)
Query: 28 SLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKI 85
S T ++ S L +P + T L L N+I +E F LT+L+ L+L NN++
Sbjct: 10 SGTTVDCSGKSLASVPTGIPTT---TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 66
Query: 86 SEVSSNVGD-LINLAILDLSDNELTDVPC----ELSSLFHLKSLFLGGNPIKTVRNDILQ 140
+ + + V D L L L L+DN+L +P L SL H ++L NP +DIL
Sbjct: 67 TVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH---IWLLNNPWDCACSDILY 123
Query: 141 DSKRIISH 148
S+ I H
Sbjct: 124 LSRWISQH 131
Score = 44.5 bits (106), Expect = 6e-06
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINN 63
+ L L N++ +F + LT L+L NQLT+LP V LT L L N++ +
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 64 MENDYFLTLTKLSLLNLKNN 83
+ F L L+ + L NN
Sbjct: 93 IPRGAFDNLKSLTHIWLLNN 112
Score = 36.8 bits (86), Expect = 0.002
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 2 LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLG 57
L+ L LDL +N+L LP +F + LT+L+L+ NQL +P + K+LTH+ L
Sbjct: 53 LTQLTRLDLDNNQL--TVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110
Query: 58 FN 59
N
Sbjct: 111 NN 112
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 52.3 bits (126), Expect = 1e-08
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 13/128 (10%)
Query: 28 SLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKI 85
T +N +L +P + TD L L N+I +E F L L L +NK+
Sbjct: 13 DQTLVNCQNIRLASVPAGIPTD---KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL 69
Query: 86 SEVSSNVGD-LINLAILDLSDNELTDVPC----ELSSLFHLKSLFLGGNPIKTVRNDILQ 140
+ + + V D L L LDL+DN L +P L SL H ++L NP DI+
Sbjct: 70 TAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTH---IYLYNNPWDCECRDIMY 126
Query: 141 DSKRIISH 148
+ H
Sbjct: 127 LRNWVADH 134
Score = 44.6 bits (106), Expect = 6e-06
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINN 63
+ L L++N++ +F + +L +L + N+LT +P V LT L L N + +
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 64 MENDYFLTLTKLSLLNLKNN 83
+ F L L+ + L NN
Sbjct: 96 IPRGAFDNLKSLTHIYLYNN 115
Score = 37.2 bits (87), Expect = 0.002
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 2 LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLG 57
L +L+ L + NKL ++P +F + LT+L+L+ N L +P + K+LTH+ L
Sbjct: 56 LVNLQQLYFNSNKL--TAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113
Query: 58 FN 59
N
Sbjct: 114 NN 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 53.6 bits (129), Expect = 2e-08
Identities = 40/189 (21%), Positives = 77/189 (40%), Gaps = 33/189 (17%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDM-----RSLTELNLSYNQLT---------MLPVCTDC 48
+++ +L+LS N L S + ++T L+L +N +
Sbjct: 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP-- 137
Query: 49 KNLTHLLLGFNKINNMENDYFLTL-----TKLSLLNLKNNKISEVS-SNVGDLI-----N 97
++T L L N + +D + + ++ LNL+ N ++ + + + + +
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197
Query: 98 LAILDLSDNELTDVPC-ELSSLF-----HLKSLFLGGNPIKTVRNDILQDSKRIISHIKT 151
+ LDLS N L EL+ +F H+ SL L N + + L+ K + H++T
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257
Query: 152 SRLDYHCQN 160
LDY
Sbjct: 258 VYLDYDIVK 266
Score = 53.2 bits (128), Expect = 2e-08
Identities = 40/160 (25%), Positives = 62/160 (38%), Gaps = 33/160 (20%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDM-----RSLTELNLSYNQLT---------MLPVCTDC 48
+ +LDLS N L S S I S+T LNLS N L +L
Sbjct: 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI--P 79
Query: 49 KNLTHLLLGFNKINNMENDYFLTL-----TKLSLLNLKNNKISEVS-SNVGDLI-----N 97
N+T L L N ++ +D + +++L+L N S S S +
Sbjct: 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139
Query: 98 LAILDLSDNELTDVPCE-LSSLF-----HLKSLFLGGNPI 131
+ L+L N+L + L + ++ SL L GN +
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179
Score = 49.7 bits (119), Expect = 3e-07
Identities = 25/159 (15%), Positives = 51/159 (32%), Gaps = 30/159 (18%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDM-----RSLTELNLSYNQLT-------MLPVCTDCKN 50
+ + +L+L N L S I + ++ LNL N L + + +
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197
Query: 51 LTHLLLGFNKINNMENDYFLTL-----TKLSLLNLKNNKISE-----VSSNVGDLINLAI 100
+T L L N + + + LNL N + + L +L
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257
Query: 101 LDLSDNELTDVPCE--------LSSLFHLKSLFLGGNPI 131
+ L + + ++ E ++ + + G I
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296
Score = 46.2 bits (110), Expect = 4e-06
Identities = 24/172 (13%), Positives = 49/172 (28%), Gaps = 34/172 (19%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDM-----RSLTELNLSYNQLT------MLPVCTDCKNL 51
+ + +LDLS N L S + + LNL N L + + K+L
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255
Query: 52 THLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDV 111
+ L ++ + NM + L N + + ++D + E+
Sbjct: 256 QTVYLDYDIVKNMSKEQCKALGAA----FPNIQ------------KIILVDKNGKEIHPS 299
Query: 112 PCEL------SSLFHLKSLFLGGNPIKTV-RNDILQDSKRIISHIKTSRLDY 156
L + ++ + I ++ S
Sbjct: 300 HSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTC 351
Score = 33.1 bits (76), Expect = 0.074
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 17/101 (16%)
Query: 48 CKNLTHLLLGFNKINNMENDYFL-----TLTKLSLLNLKNNKISEVSSNV------GDLI 96
+T L L N + ++ + T ++ LNL N + +S+
Sbjct: 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80
Query: 97 NLAILDLSDNELTDVPCEL------SSLFHLKSLFLGGNPI 131
N+ L+LS N L+ + + F + L LG N
Sbjct: 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 52.7 bits (127), Expect = 4e-08
Identities = 28/156 (17%), Positives = 49/156 (31%), Gaps = 27/156 (17%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDM-----RSLTELNLSYNQLT------MLPVCTDCKNL 51
+ L+ L L NKL + L L + +T + V ++L
Sbjct: 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 286
Query: 52 THLLLGFNKINNMENDYFL-----TLTKLSLLNLKNNKISE-----VSSNVGDLINLAIL 101
L L N++ + +L L +K+ + SS + L L
Sbjct: 287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346
Query: 102 DLSDNELTDVPCEL------SSLFHLKSLFLGGNPI 131
+S+N L D L+ L+L +
Sbjct: 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382
Score = 51.9 bits (125), Expect = 7e-08
Identities = 34/156 (21%), Positives = 53/156 (33%), Gaps = 27/156 (17%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMR-----SLTELNLSYNQLT------MLPVCTDCKNL 51
L+ L LS N L L L + L +L L Y L+ + V +
Sbjct: 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172
Query: 52 THLLLGFNKINNMENDYF---LTLTKLSL--LNLKNNKISE-----VSSNVGDLINLAIL 101
L + N IN L + L L L++ ++ + V +L L
Sbjct: 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232
Query: 102 DLSDNELTDVPCE------LSSLFHLKSLFLGGNPI 131
L N+L DV L L++L++ I
Sbjct: 233 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268
Score = 51.5 bits (124), Expect = 1e-07
Identities = 29/155 (18%), Positives = 49/155 (31%), Gaps = 26/155 (16%)
Query: 4 HLKTLDLSHNKLVSDSLPLFIDM----RSLTELNLSYNQLTMLPVCTDC-------KNLT 52
L+ L L + SD+ + SL EL L N+L + + C L
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259
Query: 53 HLLLGFNKINNMENDYF----LTLTKLSLLNLKNNKIS-EVSSNVGDLI-----NLAILD 102
L + I L L+L N++ E + + + + L L
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319
Query: 103 LSDNELTDVPCE-----LSSLFHLKSLFLGGNPIK 132
+ T C L+ L L + N ++
Sbjct: 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354
Score = 51.1 bits (123), Expect = 1e-07
Identities = 30/158 (18%), Positives = 48/158 (30%), Gaps = 30/158 (18%)
Query: 2 LSHLKTLDLSHNKLVSDSL----PLFIDMRSLTELNLSYNQLT---------MLPVCTDC 48
L + + L L +L ELNL N+L L +
Sbjct: 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS-- 84
Query: 49 KNLTHLLLGFNKINNME----NDYFLTLTKLSLLNLKNNKISEVS-SNVGDLI-----NL 98
+ L L + + TL L L+L +N + + + + + L
Sbjct: 85 CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRL 144
Query: 99 AILDLSDNELTDVPCE-----LSSLFHLKSLFLGGNPI 131
L L L+ CE L + K L + N I
Sbjct: 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182
Score = 50.3 bits (121), Expect = 2e-07
Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 23/152 (15%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFID-MRSLTELNLSYNQLT------MLPVCTDCKNLTHLL 55
+++LD+ +L + ++ + L LT + L L
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 56 LGFNKINNMENDYFLTL-----TKLSLLNLKNNKISE-----VSSNVGDLINLAILDLSD 105
L N++ ++ L K+ L+L+N ++ +SS + L L L LSD
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122
Query: 106 NELTDVPCE------LSSLFHLKSLFLGGNPI 131
N L D + L L+ L L +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154
Score = 48.8 bits (117), Expect = 6e-07
Identities = 29/156 (18%), Positives = 51/156 (32%), Gaps = 27/156 (17%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDM-----RSLTELNLSYNQLT------MLPVCTDCKNL 51
LK L L+ N+L + L + L L + T V + L
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343
Query: 52 THLLLGFNKINNMENDYF-----LTLTKLSLLNLKNNKISE-----VSSNVGDLINLAIL 101
L + N++ + + L +L L + +S+ +++ + +L L
Sbjct: 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403
Query: 102 DLSDNELTDVPCEL------SSLFHLKSLFLGGNPI 131
DLS+N L D L+ L L
Sbjct: 404 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439
Score = 48.4 bits (116), Expect = 1e-06
Identities = 29/158 (18%), Positives = 47/158 (29%), Gaps = 30/158 (18%)
Query: 3 SHLKTLDLSHNKLVSDSL----PLFIDMRSLTELNLSYNQL---------TMLPVCTDCK 49
L+ L L + L + S + EL +S N + L
Sbjct: 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSP--C 199
Query: 50 NLTHLLLGFNKINNMENDYF----LTLTKLSLLNLKNNKISE------VSSNVGDLINLA 99
L L L + + + L L L +NK+ + + L
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259
Query: 100 ILDLSDNELTDVPCE-----LSSLFHLKSLFLGGNPIK 132
L + + +T C L + LK L L GN +
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297
Score = 37.6 bits (88), Expect = 0.003
Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 21/129 (16%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDM----RSLTELNLSYNQLT---MLPVC----TDCKNL 51
L++L + + F + R L EL +S N+L + +C L
Sbjct: 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVL 372
Query: 52 THLLLGFNKINNMENDYF----LTLTKLSLLNLKNNKISEV-SSNVGDLI-----NLAIL 101
L L +++ L L L+L NN + + + + + L L
Sbjct: 373 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 432
Query: 102 DLSDNELTD 110
L D ++
Sbjct: 433 VLYDIYWSE 441
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 49.3 bits (118), Expect = 5e-07
Identities = 35/196 (17%), Positives = 65/196 (33%), Gaps = 46/196 (23%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDM-----RSLTELNLSYNQLT---------MLPVCT 46
+ + L L N L ++ D+ +T L LS N LT L T
Sbjct: 124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT 183
Query: 47 DCKNLTHLLLGFNKINN----------MENDYFLTLTKLSLLNLKNNKISE-----VSSN 91
++THL L + + N +L LN+ N + ++
Sbjct: 184 ---SVTHLSLLHTGLGDEGLELLAAQLDRN------RQLQELNVAYNGAGDTAALALARA 234
Query: 92 VGDLINLAILDLSDNELTDVPCE--------LSSLFHLKSLFLGGNPIKTVRNDILQDSK 143
+ +L +L L NEL+ + + G + + IL + +
Sbjct: 235 AREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQ 294
Query: 144 RIISHIKTSRLDYHCQ 159
R ++ +R+ H +
Sbjct: 295 RNLNSWDRARVQRHLE 310
Score = 48.9 bits (117), Expect = 6e-07
Identities = 30/162 (18%), Positives = 55/162 (33%), Gaps = 39/162 (24%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDM-----RSLTELNLSYNQLT------MLPVCTDCK 49
+LS L+ L+L+ ++ + + +L E+NL+ QL +LPV
Sbjct: 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPV---FL 126
Query: 50 NLTHLLLGFNKINN----------MENDYFLTLTKLSLLNLKNNKISEV-----SSNVGD 94
L L N + + + +++ L L NN ++ +
Sbjct: 127 RARKLGLQLNSLGPEACKDLRDLLLHDQ-----CQITTLRLSNNPLTAAGVAVLMEGLAG 181
Query: 95 LINLAILDLSDNELTDVPCE-----LSSLFHLKSLFLGGNPI 131
++ L L L D E L L+ L + N
Sbjct: 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223
Score = 47.4 bits (113), Expect = 2e-06
Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 26/153 (16%)
Query: 2 LSHLKTLDLSH--NKLVSDSLPLFIDMRSLTELNLSYNQLT---------MLPVCTDCKN 50
L + LD + + + + SL +LNL+ ++T +L
Sbjct: 46 LPPSELLDHLFFHYEFQNQRFSAEV-LSSLRQLNLAGVRMTPVKCTVVAAVLGSGR--HA 102
Query: 51 LTHLLLGFNKINNMENDYFLT-LTKLSLLNLKNNKISEVSSNV------GDLINLAILDL 103
L + L +++ L + L L+ N + + D + L L
Sbjct: 103 LDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRL 162
Query: 104 SDNELTDVPCE-----LSSLFHLKSLFLGGNPI 131
S+N LT L+ + L L +
Sbjct: 163 SNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL 195
Score = 45.9 bits (109), Expect = 5e-06
Identities = 28/167 (16%), Positives = 52/167 (31%), Gaps = 38/167 (22%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDM----RSLTELNLSYNQLT------MLPVCTDCKNLT 52
+ + L L H L + L L R L ELN++YN + + +L
Sbjct: 183 TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLE 242
Query: 53 HLLLGFNKINNM-------ENDYFLTLTKLSLLNLKNNKISEVSS--------------- 90
L L FN++++ ++ + + +SE S
Sbjct: 243 LLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDR 302
Query: 91 -NVGDLINLAILDLSDNELTDVPCE-----LSSLFHLKSLFLGGNPI 131
V + L + DL D+ + L +++L
Sbjct: 303 ARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 44.5 bits (105), Expect = 2e-05
Identities = 34/182 (18%), Positives = 63/182 (34%), Gaps = 17/182 (9%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFID-MRSLTELNLSY-NQLT---MLPVCTDCKNLTHLLL 56
+ L+ + L + D L L ++ L LS + + + C+NL L L
Sbjct: 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL 163
Query: 57 GFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD---------LINLAILDLSDNE 107
+ ++++ + + +L + IS ++S V NL L L+
Sbjct: 164 RESDVDDVSGHWLSHFPD-TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222
Query: 108 -LTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGM 166
L + L L+ L GG VR D+ +S K R + +
Sbjct: 223 PLEKLATLLQRAPQLEELGTGGYT-AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYL 281
Query: 167 SS 168
+
Sbjct: 282 PA 283
Score = 33.7 bits (77), Expect = 0.051
Identities = 27/183 (14%), Positives = 57/183 (31%), Gaps = 17/183 (9%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSY-----NQLTMLPVCTDCKNLTHL-- 54
+LK+L L+ + L L EL + L
Sbjct: 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRC 269
Query: 55 LLGFNKINNMENDYFLT-LTKLSLLNLKNNKIS--EVSSNVGDLINLAILDLSDNELTDV 111
L GF + ++L+ LNL + ++ + L L + D + D
Sbjct: 270 LSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDA 328
Query: 112 PCE--LSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKT----SRLDYHCQNVDGGG 165
E S+ L+ L + + + ++ + ++S + Y C+ +
Sbjct: 329 GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA 388
Query: 166 MSS 168
+ +
Sbjct: 389 LIT 391
Score = 33.7 bits (77), Expect = 0.058
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 3/108 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSL-PLFIDMRSLTELNLSYN--QLTMLPVCTDCKNLTHLLLGF 58
S L TL+LS+ + S L L L L + + + + CK+L L +
Sbjct: 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDN 106
++ ME + LT L +++ K+ V + N A++ ++ N
Sbjct: 348 SEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN 395
Score = 30.6 bits (69), Expect = 0.60
Identities = 21/163 (12%), Positives = 51/163 (31%), Gaps = 18/163 (11%)
Query: 2 LSHLKTLDLSHNKLVSDSLP-----------LFIDMRSLTELNLSY--NQLTMLPVCTDC 48
++ L + + + + L L+LS + T
Sbjct: 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYA 455
Query: 49 KNLTHLLLGFNKINNMENDYFLT-LTKLSLLNLKNNKISE--VSSNVGDLINLAILDLSD 105
K + L + F +++ + L+ L L +++ + + +N L + L +S
Sbjct: 456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515
Query: 106 NELTDVPCEL--SSLFHLKSLFLGGNPIKTVRNDILQDSKRII 146
++ C+L + L + R + + I
Sbjct: 516 CSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFI 558
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 44.2 bits (103), Expect = 2e-05
Identities = 24/141 (17%), Positives = 43/141 (30%), Gaps = 24/141 (17%)
Query: 2 LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFN 59
+LK+L++ L + L D+ +L +L L L
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD-MNVFRPLFSK-- 248
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKIS----EVSSNVGDLINLAILDLSDNELTDVPCE- 114
L L + + + E+ L L +D+S LTD
Sbjct: 249 ----------DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARL 298
Query: 115 ----LSSLFHLKSLFLGGNPI 131
+ + HLK + + N +
Sbjct: 299 LLDHVDKIKHLKFINMKYNYL 319
Score = 39.9 bits (92), Expect = 5e-04
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFID----MRSLTELNLSYNQLT 40
+L L+T+D+S L + L +D ++ L +N+ YN L+
Sbjct: 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320
Score = 29.5 bits (65), Expect = 1.1
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 2 LSHLKTLDLSHNKL-------VSDSLPLFIDMRSLTELNLSYN 37
+ HLK +++ +N L + SLP+ ID+ E + Y+
Sbjct: 306 IKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQEYDDDYS 348
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 41.8 bits (98), Expect = 1e-04
Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 17/142 (11%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSY----NQLTMLPVCTDCKNLTHLLLG 57
S L+ L L +L + +L LNLS ++ + + + C L L L
Sbjct: 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 176
Query: 58 FNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD---------LINLAILDLSD-NE 107
+ + + + +S N+ NL LDLSD
Sbjct: 177 WCF--DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 234
Query: 108 LTDVPCE-LSSLFHLKSLFLGG 128
L + + L +L+ L L
Sbjct: 235 LKNDCFQEFFQLNYLQHLSLSR 256
Score = 31.8 bits (72), Expect = 0.22
Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 16/128 (12%)
Query: 14 KLVSDSLPLFIDMRSLTELNLSYNQLT---MLPVCTDCKNLTHLLLGFNKINNMENDYFL 70
+ L + ++LS + + + + + C L +L L ++++ +
Sbjct: 80 SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA 139
Query: 71 TLTKLSLLNL------KNNKISEVSSNVGDLINLAILDLSD-NELTDVPCEL---SSLFH 120
+ L LNL + + S+ L L+LS + T+ ++
Sbjct: 140 KNSNLVRLNLSGCSGFSEFALQTLLSS---CSRLDELNLSWCFDFTEKHVQVAVAHVSET 196
Query: 121 LKSLFLGG 128
+ L L G
Sbjct: 197 ITQLNLSG 204
Score = 27.9 bits (62), Expect = 3.3
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 2 LSHLKTLDLSHNKLVSD-SLPLFIDMRSLTELNLSY 36
L++L+ L LS + +L ++ +L L +
Sbjct: 246 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 41.1 bits (96), Expect = 1e-04
Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 27/134 (20%)
Query: 6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNME 65
+ LDL + D + ID+ L + L ++ + L L L N++
Sbjct: 130 QALDLKGLRSDPDLVAQNIDV-VLNRRSCMAATLRII--EENIPELLSLNLSNNRLYR-- 184
Query: 66 NDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSL--FHLKS 123
+ ++SS V NL IL+LS NEL EL + L+
Sbjct: 185 -------------------LDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEE 224
Query: 124 LFLGGNPIKTVRND 137
L+L GN + D
Sbjct: 225 LWLDGNSLCDTFRD 238
Score = 28.4 bits (63), Expect = 2.1
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 2 LSHLKTLDLSHNKL--VSDSLPLFIDMRSLTELNLSYNQLT 40
+ L +L+LS+N+L + D + +L LNLS N+L
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209
Score = 27.3 bits (60), Expect = 4.6
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKN 50
+LK L+LS N+L S+ I L EL L N +C ++
Sbjct: 194 KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN-----SLCDTFRD 238
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.002
Identities = 38/225 (16%), Positives = 72/225 (32%), Gaps = 78/225 (34%)
Query: 6 KTLDLSHNKLVSDSLP------LFIDMRS--LTE---LNLSYNQLTM----LP--VCTDC 48
K L + K V+D L + +D S LT +L L LP V T
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT-- 324
Query: 49 KNLTHLLL----------GFNKINN---MENDYFLTLTKLSLLNLKNNKISE-------- 87
T+ G +N + D T+ + SL L+ + +
Sbjct: 325 ---TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 88 -----VSSNVGDLINLAIL--DLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQ 140
+ + + L+++ D+ +++ V +L H SL + +
Sbjct: 382 PPSAHIPTIL-----LSLIWFDVIKSDVMVVVNKL----HKYSL-------------VEK 419
Query: 141 DSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRT 185
K I + L+ + + + I +D Y + +T
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRS-----I-VDHYNIPKT 458
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 37.6 bits (87), Expect = 0.003
Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 21/136 (15%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLT---MLPVCTDCKNLTHLLLG 57
+ ++ LDL + L ++ I +L L N + + + CK L L +
Sbjct: 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIE 350
Query: 58 FNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE--- 114
D +++ L+ L L + + +++T+ E
Sbjct: 351 RGADEQGMEDEEGLVSQRGLIALAQG-----------CQELEYMAVYVSDITNESLESIG 399
Query: 115 --LSSLFHLKSLFLGG 128
L +L + + L
Sbjct: 400 TYLKNLCDFRLVLLDR 415
Score = 36.1 bits (83), Expect = 0.009
Identities = 24/160 (15%), Positives = 55/160 (34%), Gaps = 18/160 (11%)
Query: 2 LSHLKTLDLSHNKLVSDS------LPLFIDMRSLTELNLSYN--QLT---MLPVCTDCKN 50
L + + L + ++D L I + L LT + + N
Sbjct: 405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPN 464
Query: 51 LTHLLLGFNKINNMENDYFLT-LTKLSLLNLKNNKISE--VSSNVGDLINLAILDLSDNE 107
+ +LLG+ ++ F L L ++ SE +++ V L +L L +
Sbjct: 465 VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524
Query: 108 LTDVPCELSSL----FHLKSLFLGGNPIKTVRNDILQDSK 143
+ +L + ++++ + P + +I +
Sbjct: 525 ASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEH 564
Score = 28.4 bits (63), Expect = 2.5
Identities = 16/134 (11%), Positives = 40/134 (29%), Gaps = 8/134 (5%)
Query: 2 LSHLKTLDLSHNKLVSDS--LPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFN 59
L ++ + +++ ++ +L+ + LG +
Sbjct: 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS 278
Query: 60 KINNMENDYFLTL-TKLSLLNLKNNKIS--EVSSNVGDLINLAILDLSDNELTDVPCE-- 114
+ E ++ L+L + + + + NL +L+ N + D E
Sbjct: 279 YMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVL 337
Query: 115 LSSLFHLKSLFLGG 128
LK L +
Sbjct: 338 AQYCKQLKRLRIER 351
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 34.8 bits (80), Expect = 0.014
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDM----RSLTELNLSYNQLT 40
H++ L++ + I++ SL LN+ N LT
Sbjct: 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 34.2 bits (79), Expect = 0.019
Identities = 13/104 (12%), Positives = 30/104 (28%), Gaps = 24/104 (23%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDM----RSLTELNLSYNQLT---------MLPVCTDCK 49
+++K + + +M +L LN+ N ++ L T
Sbjct: 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNT--- 121
Query: 50 NLTHLLLGFNKINNMENDYFLTL-------TKLSLLNLKNNKIS 86
+L L + + N+ + + T L +
Sbjct: 122 SLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 33.3 bits (76), Expect = 0.038
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 9/89 (10%)
Query: 2 LSHLKTLDLSHNKLVSDS-----LPLFIDMRSLTELNLSYN-QLTM--LPVCTDCKNLTH 53
L +++ + L + D L +S+ E+ + +T + +NL +
Sbjct: 84 LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKY 143
Query: 54 LLLGF-NKINNMENDYFLTLTKLSLLNLK 81
L L + E T L L LK
Sbjct: 144 LFLSDLPGVKEKEKIVQAFKTSLPSLELK 172
Score = 32.1 bits (73), Expect = 0.10
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 10/104 (9%)
Query: 35 SYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK------ISEV 88
YN L P+ D + + + I ++ D+ L + + L + +
Sbjct: 49 DYNHLPTGPL--DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL 106
Query: 89 SSNVGDLINLAILDLSDN-ELTDV-PCELSSLFHLKSLFLGGNP 130
S ++ +++ +TD L +LK LFL P
Sbjct: 107 SQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150
Score = 31.7 bits (72), Expect = 0.14
Identities = 17/122 (13%), Positives = 43/122 (35%), Gaps = 20/122 (16%)
Query: 5 LKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNM 64
++ +D + + ++S ++ + ++ L C + +++ +
Sbjct: 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCK-----------CHYIED--GCLERLSQL 109
Query: 65 ENDYFLTLTKLSLLNLKNNKISEVS-SNVGDLINLAILDLSD-NELTDVPCELSSLFHLK 122
EN L + L + + +++ + NL L LSD + + E
Sbjct: 110 EN---LQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEK--EKIVQAFKT 164
Query: 123 SL 124
SL
Sbjct: 165 SL 166
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.041
Identities = 46/314 (14%), Positives = 85/314 (27%), Gaps = 124/314 (39%)
Query: 5 LKTLDLSHNKL-VSDSLPLFIDMRSLTELNLSYNQL-----TMLPVCTDC-------KNL 51
+ L LSH L +P T +QL +LP T+
Sbjct: 6 TRPLTLSHGSLEHVLLVP--------TASFFIASQLQEQFNKILPEPTEGFAADDEPTTP 57
Query: 52 THLL---LGF--NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDN 106
L+ LG+ + + + F + L L
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCL----------------------------T 89
Query: 107 ELTDVPCELSSLFHLKSLFLGGNPIKTV--------------RNDILQD-------SKRI 145
E F + +L GN I + +++++ +KR
Sbjct: 90 E-----------FE--NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP 136
Query: 146 ISHIKTSRLDYHCQNVD-------GG-GMSS------QE--STSEINIDKYKLDRTKTL- 188
S L + GG G + ++ T + + +TL
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS 196
Query: 189 TLCKVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNR-PFAL 247
L + E V+ +G +NI ++ L+ P+ Y+ P +
Sbjct: 197 ELIRTTLDAEKVFTQG---------LNILEW-LENPSN--------TPDKDYLLSIPISC 238
Query: 248 TYNYVGDFFHFCLI 261
V H+ +
Sbjct: 239 PLIGVIQLAHYVVT 252
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 32.1 bits (73), Expect = 0.074
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 97 NLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNP 130
+ L L+ N LT +P L +L L++ LG NP
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66
Score = 31.7 bits (72), Expect = 0.088
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 50 NLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNN 83
+ T L+L N + + L L +L N
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 29.0 bits (65), Expect = 0.73
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCK 49
L L+ N L + L + +L +L N C DC+
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR----C-DCR 72
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.390
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,621,513
Number of extensions: 194715
Number of successful extensions: 3670
Number of sequences better than 10.0: 1
Number of HSP's gapped: 843
Number of HSP's successfully gapped: 526
Length of query: 263
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 171
Effective length of database: 4,133,061
Effective search space: 706753431
Effective search space used: 706753431
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)