RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3787
(263 letters)
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 60.0 bits (144), Expect = 5e-11
Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 24/152 (15%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKIN 62
++L L L+ N+L + + +LT+L+L+ NQ++ L + LT L LG N+I+
Sbjct: 219 TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS 276
Query: 63 NMENDYFLT--------------------LTKLSLLNLKNNKISEVSSNVGDLINLAILD 102
N+ LT L L+ L L N IS++S V L L L
Sbjct: 277 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLF 335
Query: 103 LSDNELTDVPCELSSLFHLKSLFLGGNPIKTV 134
++N+++DV L++L ++ L G N I +
Sbjct: 336 FANNKVSDVS-SLANLTNINWLSAGHNQISDL 366
Score = 58.9 bits (141), Expect = 9e-11
Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 6/128 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ L L L N++ ++ + +LT L L+ NQL + ++ KNLT+L L FN I
Sbjct: 262 LTKLTELKLGANQI--SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 319
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
+++ +LTKL L NNK+S+VSS + +L N+ L N+++D+ L++L +
Sbjct: 320 SDISP--VSSLTKLQRLFFANNKVSDVSS-LANLTNINWLSAGHNQISDLT-PLANLTRI 375
Query: 122 KSLFLGGN 129
L L
Sbjct: 376 TQLGLNDQ 383
Score = 51.5 bits (122), Expect = 3e-08
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
L +L L L N + + + L L + N+++ + + N+ L G N+
Sbjct: 305 NLKNLTYLTLYFNNI--SDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQ 362
Query: 61 INNMENDYFLTLTKLSLLNLKNN 83
I+++ LT+++ L L +
Sbjct: 363 ISDLTP--LANLTRITQLGLNDQ 383
Score = 36.9 bits (84), Expect = 0.002
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L + TL + S+ + +LT++N S NQLT + + L +L+ N+I
Sbjct: 43 LDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI 100
Query: 62 NNMENDYF 69
++
Sbjct: 101 ADITPLAN 108
Score = 36.9 bits (84), Expect = 0.002
Identities = 14/80 (17%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 25 DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK 84
+ + L +T TD +T L I +++ L L+ +N NN+
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQ 77
Query: 85 ISEVSSNVGDLINLAILDLS 104
+++++ + +L L + ++
Sbjct: 78 LTDITP-LKNLTKLVDILMN 96
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 53.5 bits (127), Expect = 6e-09
Identities = 34/141 (24%), Positives = 53/141 (37%), Gaps = 4/141 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
L +L TL L +NK+ S F + L L LS NQL LP + + L
Sbjct: 54 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEIT 113
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLF 119
K+ + + + L + + L+ + ++D +T +P L
Sbjct: 114 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP-- 171
Query: 120 HLKSLFLGGNPIKTVRNDILQ 140
L L L GN I V L+
Sbjct: 172 SLTELHLDGNKITKVDAASLK 192
Score = 51.2 bits (121), Expect = 4e-08
Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 12/141 (8%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
+ L + ++ + + L SLTEL+L N++T + + NL L L FN
Sbjct: 149 MKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP------- 112
I+ ++N L L+L NNK+ +V + D + ++ L +N ++ +
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265
Query: 113 CELSSLFHLKSLFLGGNPIKT 133
+ + L NP++
Sbjct: 266 GYNTKKASYSGVSLFSNPVQY 286
Score = 47.0 bits (110), Expect = 7e-07
Identities = 32/156 (20%), Positives = 64/156 (41%), Gaps = 2/156 (1%)
Query: 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINN 63
+ L + K F M+ L+ + ++ +T +P +LT L L NKI
Sbjct: 127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITK 185
Query: 64 MENDYFLTLTKLSLLNLKNNKI-SEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLK 122
++ L L+ L L N I + + ++ + +L L L++N+L VP L+ +++
Sbjct: 186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ 245
Query: 123 SLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHC 158
++L N I + ++ S +
Sbjct: 246 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281
Score = 44.6 bits (104), Expect = 4e-06
Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 10/133 (7%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQL--TMLPVCTDCKNLTHLLLGF 58
+ L L L NK+ + +L +L LS+N + + +L L L
Sbjct: 169 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 228
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-------GDLINLAILDLSDNELTDV 111
NK+ + + ++ L NN IS + SN + + + L N +
Sbjct: 229 NKLVKVPGGLA-DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 287
Query: 112 PCELSSLFHLKSL 124
+ S+ +
Sbjct: 288 EIQPSTFRCVYVR 300
Score = 44.3 bits (103), Expect = 6e-06
Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 7/143 (4%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNK 60
LDL +NK+ F ++++L L L N+++ + L L L N+
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
+ + TL +L + + K+ + S L + +++L N L E +
Sbjct: 91 LKELPEKMPKTLQELRVHENEITKVRK--SVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148
Query: 121 LKSL---FLGGNPIKTVRNDILQ 140
+K L + I T+ +
Sbjct: 149 MKKLSYIRIADTNITTIPQGLPP 171
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 50.1 bits (119), Expect = 1e-08
Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT-MLPVCTDCKNLTHLLLGFNKINNM 64
+ L L+H L L + +T L+LS+N+L + P + L L N + N+
Sbjct: 1 RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Query: 65 ENDYFLTLTKLSLLNLKNNKISEVS--SNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
+ L + L L NN++ + + + L +L+L N L L +
Sbjct: 59 DGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115
Score = 46.2 bits (109), Expect = 2e-07
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L + LDLSHN+L P +R L L S N L + + L LLL N++
Sbjct: 19 LLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRL 77
Query: 62 NNMEN-DYFLTLTKLSLLNLKNNKISEVSSNVGDLINL 98
++ +L LLNL+ N + + L +
Sbjct: 78 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115
Score = 45.5 bits (107), Expect = 5e-07
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 4/102 (3%)
Query: 32 LNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSN 91
L+L++ LT+L +THL L N++ + L L +L +N + V
Sbjct: 3 LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDGV 61
Query: 92 VGDLINLAILDLSDNELTDVPC--ELSSLFHLKSLFLGGNPI 131
L L L +N L L S L L L GN +
Sbjct: 62 ANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102
Score = 31.2 bits (70), Expect = 0.050
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 4 HLKTLDLSHNKLVS-DSLPLFIDMRSLTELNLSYNQLTMLP-----VCTDCKNLTHLL 55
L+ L L +N+L ++ + L LNL N L + +++ +L
Sbjct: 66 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 123
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 49.1 bits (115), Expect = 2e-07
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 45 CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLS 104
+ L L N +N L LN+ NNK+ E+ + L L S
Sbjct: 256 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIAS 312
Query: 105 DNELTDVPCELSSLFHLKSLFLGGNPIKTV 134
N L +VP + LK L + NP++
Sbjct: 313 FNHLAEVPELPQN---LKQLHVEYNPLREF 339
Score = 48.3 bits (113), Expect = 3e-07
Identities = 25/113 (22%), Positives = 36/113 (31%), Gaps = 29/113 (25%)
Query: 10 LSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYF 69
N ++ L SL ELN+S N+L LP
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL------------------------ 302
Query: 70 LTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLK 122
+L L N ++EV NL L + N L + P S+ L+
Sbjct: 303 --PPRLERLIASFNHLAEVPELPQ---NLKQLHVEYNPLREFPDIPESVEDLR 350
Score = 46.7 bits (109), Expect = 1e-06
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
+ L+ L++S+NKL+ L L L S+N L +P +NL L + +N
Sbjct: 282 LPPSLEELNVSNNKLIE----LPALPPRLERLIASFNHLAEVP--ELPQNLKQLHVEYNP 335
Query: 61 INNMENDYFLTLTKLSLLN 79
+ D ++ L + +
Sbjct: 336 LREFP-DIPESVEDLRMNS 353
Score = 37.9 bits (86), Expect = 8e-04
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKIN 62
L+L++ L SLP L L S N LT LP ++L LL+ N +
Sbjct: 38 RQAHELELNNLGL--SSLPELPP--HLESLVASCNSLTELP--ELPQSLKSLLVDNNNLK 91
Query: 63 NM 64
+
Sbjct: 92 AL 93
Score = 34.4 bits (77), Expect = 0.011
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 97 NLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDY 156
L+L++ L+ +P HL+SL N + + ++ + L
Sbjct: 39 QAHELELNNLGLSSLP---ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD 95
Query: 157 HCQNVDGGGMSSQ 169
++ G+S+
Sbjct: 96 LPPLLEYLGVSNN 108
Score = 33.6 bits (75), Expect = 0.020
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 27 RSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKI 85
R EL L+ L+ LP +L L+ N + + L L + NN +
Sbjct: 38 RQAHELELNNLGLSSLP--ELPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNL 90
Score = 32.1 bits (71), Expect = 0.065
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 95 LINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDI 138
+L L++S+N+L ++P + L+ L N + V
Sbjct: 283 PPSLEELNVSNNKLIELP---ALPPRLERLIASFNHLAEVPELP 323
Score = 28.6 bits (62), Expect = 0.86
Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTH 53
HL++L S N L LP +SL L + N L L
Sbjct: 57 PPHLESLVASCNSLT--ELPELP--QSLKSLLVDNNNLKALSDLPPLLEYLG 104
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 44.5 bits (104), Expect = 2e-06
Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 5/135 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
+ LDL K+ L + ++ S N++ L + L LL+ N+I
Sbjct: 17 AVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRI 75
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVS--SNVGDLINLAILDLSDNELTDVP-CELSSL 118
+ L L+ L L NN + E+ + L +L L + N +T+ L +
Sbjct: 76 CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVI 135
Query: 119 FHLKSL-FLGGNPIK 132
+ + + L +K
Sbjct: 136 YKVPQVRVLDFQKVK 150
Score = 37.6 bits (86), Expect = 4e-04
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 69 FLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPC 113
+ + L+L+ KI + + L +D SDNE+ +
Sbjct: 14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG 58
Score = 34.5 bits (78), Expect = 0.006
Identities = 6/53 (11%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 20 LPLFIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNKINNMENDYFLT 71
+ + EL+L ++ ++ + + N+I ++ L
Sbjct: 11 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLR 63
Score = 32.2 bits (72), Expect = 0.034
Identities = 8/55 (14%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 80 LKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTV 134
L I + + + + LDL ++ + ++L ++ N I+ +
Sbjct: 3 LTAELIEQAAQYT-NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL 56
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 44.4 bits (103), Expect = 5e-06
Identities = 45/135 (33%), Positives = 59/135 (43%), Gaps = 4/135 (2%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
L L TL L L LF + +L L L N L LP D NLTHL L
Sbjct: 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDV-PCELS 116
N+I+++ F L L L L N+++ V + DL L L L N L+ + L+
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222
Query: 117 SLFHLKSLFLGGNPI 131
L L+ L L NP
Sbjct: 223 PLRALQYLRLNDNPW 237
Score = 37.9 bits (86), Expect = 7e-04
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 5/132 (3%)
Query: 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKI 61
L+ L L N L + F D+ +LT L L N+++ +P +L LLL N++
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEV-SSNVGDLINLAILDLSDNELTDVPCELSSLF- 119
++ F L +L L L N +S + + + L L L L+DN C L+
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW-VCDCRARPLWA 248
Query: 120 HLKSLFLGGNPI 131
L+ + +
Sbjct: 249 WLQKFRGSSSEV 260
Score = 34.8 bits (78), Expect = 0.006
Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 5/123 (4%)
Query: 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKI 61
+L L L N++ S F + SL L L N++ + D L L L N +
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
+ + + L L L L +N L S +E+ C L
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP---CSLPQRLAG 270
Query: 122 KSL 124
+ L
Sbjct: 271 RDL 273
Score = 31.3 bits (69), Expect = 0.090
Identities = 33/151 (21%), Positives = 54/151 (35%), Gaps = 5/151 (3%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTH---LLLGFN 59
+ + + L N++ F R+LT L L N L + L
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 60 KINNMENDYFLTLTKLSLLNLKNNKISEV-SSNVGDLINLAILDLSDNELTDV-PCELSS 117
++ +++ F L +L L+L + E+ L L L L DN L +
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 118 LFHLKSLFLGGNPIKTVRNDILQDSKRIISH 148
L +L LFL GN I +V + +
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182
Score = 27.9 bits (60), Expect = 1.4
Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNM 64
T L ++P+ I + + L N+++ +P + +L + + N +
Sbjct: 14 VTTSCPQQGL--QAVPVGIP-AASQRIFLHGNRISHVPA-ASFRACRNLTILWLHSNVL 68
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 43.2 bits (100), Expect = 2e-05
Identities = 20/120 (16%), Positives = 35/120 (29%), Gaps = 1/120 (0%)
Query: 12 HNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLT 71
N+L P F ++ V T + +
Sbjct: 183 RNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242
Query: 72 LTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNP 130
L+ L+L+NN+I + + L L L++S N L + +L N
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
Score = 40.1 bits (92), Expect = 1e-04
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT-MLPVCTDCKNLTHLLLGFN 59
+ +L LDL +N++ ++ L LN+S+N L +P + + N
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301
Query: 60 K 60
K
Sbjct: 302 K 302
Score = 39.7 bits (91), Expect = 2e-04
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQL---TMLPVCT 46
L L +L++S N L +P +++ + N+ + LP CT
Sbjct: 267 LKFLHSLNVSFNNL-CGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT 313
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 43.4 bits (100), Expect = 2e-05
Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 7/89 (7%)
Query: 5 LKTLDLSHNKLVSDSLP-LFIDMRSLTELNLSYNQLT------MLPVCTDCKNLTHLLLG 57
+++LD+ +L L ++ + L LT + L L L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 58 FNKINNMENDYFLTLTKLSLLNLKNNKIS 86
N++ ++ L + ++ +
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92
Score = 35.3 bits (79), Expect = 0.006
Identities = 18/89 (20%), Positives = 27/89 (30%), Gaps = 21/89 (23%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDM----RSLTELNLSYNQLTMLPVCTDCKNLTHLLLGF 58
S L+ L L+ + S SL EL+LS N L + +++
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP---- 424
Query: 59 NKINNMENDYFLTLTKLSLLNLKNNKISE 87
L L L + SE
Sbjct: 425 -------------GCLLEQLVLYDIYWSE 440
Score = 35.0 bits (78), Expect = 0.007
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 2 LSHLKTLDLSHNKLVSDSL----PLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLG 57
L + + L L +L ELNL N+L + V + L
Sbjct: 26 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 85
Query: 58 FNKIN 62
K++
Sbjct: 86 IQKLS 90
Score = 35.0 bits (78), Expect = 0.008
Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 12/123 (9%)
Query: 50 NLTHLLLGFNKINNMENDYFLT-LTKLSLLNLKNNKISE-----VSSNVGDLINLAILDL 103
++ L + ++++ L L + ++ L + ++E +SS + LA L+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 104 SDNELTDVPCEL------SSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYH 157
NEL DV + ++ L L + +L + R + ++ L +
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122
Query: 158 CQN 160
Sbjct: 123 LLG 125
Score = 31.9 bits (70), Expect = 0.075
Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 62 NNMENDYFLTLTKLSLLNLKNNKISE-----VSSNVGDLINLAILDLSDNELTDV-PCEL 115
+ + L +L L + +S+ +++ + +L LDLS+N L D +L
Sbjct: 358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417
Query: 116 SSLF-----HLKSLFLGGNPIKTVRNDILQDSKRIISHIKT 151
L+ L L D LQ ++ ++
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV 458
Score = 29.2 bits (63), Expect = 0.61
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 96 INLAILDLSDNELTDVPCE--LSSLFHLKSLFLGGNPI 131
+++ LD+ EL+D L L + + L +
Sbjct: 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL 39
Score = 27.6 bits (59), Expect = 1.5
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFID-----MRSLTELNLSYNQLT 40
L+ LDLS+N L + ++ L +L L +
Sbjct: 396 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 439
Score = 27.2 bits (58), Expect = 2.6
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 5/58 (8%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDM-----RSLTELNLSYNQLTMLPVCTDCKNLTHL 54
L L+L N+L + + + +L+L LT L L
Sbjct: 54 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL 111
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 41.6 bits (96), Expect = 4e-05
Identities = 41/176 (23%), Positives = 56/176 (31%), Gaps = 48/176 (27%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNL----------- 51
L LS N L + SL + LT+LNL +LT L V L
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90
Query: 52 ------------------------------------THLLLGFNKINNMENDYFLTLTKL 75
L L N++ + KL
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 76 SLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNP 130
L+L NN ++E+ + + L NL L L +N L +P L FL GNP
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206
Score = 37.8 bits (86), Expect = 7e-04
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 28 SLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK 84
S E+N LT LP K+ T L L N + + T+L+ LNL +
Sbjct: 11 SHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66
Score = 35.8 bits (81), Expect = 0.003
Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 5/112 (4%)
Query: 44 VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDL 103
+ T L L L N + + L L L L+ N + + L L
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202
Query: 104 SDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLD 155
N CE+ +L N D K + S++ + + D
Sbjct: 203 HGNPW-LCNCEILYFRR----WLQDNAENVYVWKQGVDVKAMTSNVASVQCD 249
Score = 30.1 bits (66), Expect = 0.24
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 72 LTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNP 130
+ +N ++ + ++ + IL LS+N L L L L L
Sbjct: 9 VASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66
Score = 29.7 bits (65), Expect = 0.28
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 11 SHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT-DCKNLTHLLLGFNKIN 62
++N L L + +L L L N L +P L L N
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
Score = 29.3 bits (64), Expect = 0.39
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 92 VGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRI 145
V + + ++ LT +P +L L L N + T L R+
Sbjct: 6 VSKVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRL 57
Score = 29.3 bits (64), Expect = 0.41
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQL 39
L +L TL L N L + F L L N
Sbjct: 171 LENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPW 207
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 40.2 bits (93), Expect = 6e-05
Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 6/145 (4%)
Query: 9 DLSHNKLVSDSLPLFIDMR-SLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMEN- 66
+L ++ + L L + R ++ L L P L + +
Sbjct: 3 ELKPEQV--EQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRII 60
Query: 67 -DYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSL 124
+ L L+L N + ++ ++SS V NL IL+LS NEL + L+ L
Sbjct: 61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEEL 120
Query: 125 FLGGNPIKTVRNDILQDSKRIISHI 149
+L GN + D I
Sbjct: 121 WLDGNSLSDTFRDQSTYISAIRERF 145
Score = 34.4 bits (78), Expect = 0.006
Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 5/106 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTD----CKNLTHLLLG 57
+ L+ + + + + ++ L LNLS N+L L + NL L L
Sbjct: 41 QNIDVVLNRRSSMAATLRI-IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLS 99
Query: 58 FNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDL 103
N++ + + KL L L N +S+ + I+
Sbjct: 100 GNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERF 145
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 36.2 bits (82), Expect = 0.002
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLL 56
L TL NK+ + + +L E++L NQ++ + + NL + L
Sbjct: 174 KLTTLKADDNKI--SDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTL 224
Score = 35.8 bits (81), Expect = 0.003
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 23 FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN 82
++ LT L N+++ + NL + L N+I+++ + L ++ L N
Sbjct: 169 LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226
Score = 34.2 bits (77), Expect = 0.009
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 23 FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN 82
+ +L L++ Q++ L + LT L NKI+++ +L L ++LKN
Sbjct: 147 LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKN 204
Query: 83 NKISEVSSNVGDLINLAILDLSD 105
N+IS+VS + + NL I+ L++
Sbjct: 205 NQISDVSP-LANTSNLFIVTLTN 226
Score = 34.2 bits (77), Expect = 0.009
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 33 NLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV 92
L + + + L + L+KL+ L +NKIS++S +
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-L 191
Query: 93 GDLINLAILDLSDNELTDVPCELSSLFHLKSLFL 126
L NL + L +N+++DV L++ +L + L
Sbjct: 192 ASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTL 224
Score = 33.1 bits (74), Expect = 0.026
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L++ + + + D+ +T L+ +T + NL L L N+I
Sbjct: 18 LANAIKIAAGKSNV--TDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI 75
Query: 62 NNMENDYFL 70
++ L
Sbjct: 76 TDLAPLKNL 84
Score = 32.7 bits (73), Expect = 0.031
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 72 LTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPI 131
L + + +++ + DL + L +T + + L +L L L N I
Sbjct: 18 LANAIKIAAGKSNVTDTVTQ-ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQI 75
Score = 30.0 bits (66), Expect = 0.25
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQ 38
L +L + L +N++ + + +L + L+ NQ
Sbjct: 194 LPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLT-NQ 227
Score = 29.6 bits (65), Expect = 0.28
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 26 MRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKI 85
+ + ++ + +T D +T L + +E L L L LK+N+I
Sbjct: 18 LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQI 75
Score = 28.1 bits (61), Expect = 1.1
Identities = 31/174 (17%), Positives = 52/174 (29%), Gaps = 44/174 (25%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L + TL + ++ + +L L L NQ+T L + +T L L N +
Sbjct: 40 LDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL 97
Query: 62 NNMEND-----------------------------------------YFLTLTKLSLLNL 80
N+ L
Sbjct: 98 KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS 157
Query: 81 KNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTV 134
N + + +L L L DN+++D+ L+SL +L + L N I V
Sbjct: 158 IGNAQVSDLTPLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDV 210
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 35.0 bits (79), Expect = 0.005
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 19 SLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLL 56
+ + L L LS N ++ L KNL L L
Sbjct: 170 DIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 207
Score = 34.2 bits (77), Expect = 0.009
Identities = 9/70 (12%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
+ +L + ++ S+ ++ + + + + N+T L L NK+
Sbjct: 23 FAETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL 80
Query: 62 NNMENDYFLT 71
+++ L
Sbjct: 81 TDIKPLANLK 90
Score = 32.3 bits (72), Expect = 0.040
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLS 35
L+ L+ L LS N + L +++L L L
Sbjct: 177 LTKLQNLYLSKNHI--SDLRALAGLKNLDVLELF 208
Score = 31.9 bits (71), Expect = 0.049
Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 25 DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK 84
+ NL +T + ++ ++ + I +++ L ++ L L NK
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNK 79
Query: 85 IS 86
++
Sbjct: 80 LT 81
Score = 31.1 bits (69), Expect = 0.079
Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 44/166 (26%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGF--- 58
L+ + + +++ + S+ + ++T+L L+ N+LT + + KNL L L
Sbjct: 45 LNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKV 102
Query: 59 --------------------------------------NKINNMENDYFLTLTKLSLLNL 80
N + + L+
Sbjct: 103 KDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLS 162
Query: 81 KNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFL 126
+ + L L L LS N ++D+ L+ L +L L L
Sbjct: 163 LEDNQISDIVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLEL 207
Score = 30.0 bits (66), Expect = 0.20
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 69 FLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLS 104
LTKL L L N IS++ + + L NL +L+L
Sbjct: 174 LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELF 208
Score = 26.9 bits (58), Expect = 2.0
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 36 YNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN 82
NQ++ + L +L L N I+++ L L +L L +
Sbjct: 165 DNQISDIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFS 209
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 34.1 bits (76), Expect = 0.010
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP 43
S LD+S ++ S +++ L + L LP
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP 239
Score = 32.6 bits (72), Expect = 0.032
Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Query: 8 LDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNKINNME 65
L L+ N + F + N L LP L + +I+++
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217
Query: 66 NDYFLTLTKLSLLNLKNNK 84
+ L KL + N K
Sbjct: 218 SYGLENLKKLRARSTYNLK 236
Score = 29.5 bits (64), Expect = 0.33
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
Query: 32 LNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSN 91
LN + Q + L N + + ND F + +L++ +I + S
Sbjct: 160 LNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 219
Query: 92 V-GDLINLAILDLSDNELTDVP 112
+L L L +P
Sbjct: 220 GLENLKKLRARST--YNLKKLP 239
Score = 29.1 bits (63), Expect = 0.50
Identities = 6/40 (15%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP 43
+ +K+ +P + R+ EL +L ++
Sbjct: 9 SNRVFLCQESKV--TEIPSDLP-RNAIELRFVLTKLRVIQ 45
Score = 28.0 bits (60), Expect = 1.3
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 28 SLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL 80
S +++T +P +N L K+ ++ F L + +
Sbjct: 9 SNRVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI 60
Score = 27.2 bits (58), Expect = 1.9
Identities = 4/42 (9%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 100 ILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQD 141
+ ++++T++P +L + L ++ ++
Sbjct: 12 VFLCQESKVTEIPSDLPR--NAIELRFVLTKLRVIQKGAFSG 51
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 34.1 bits (76), Expect = 0.013
Identities = 14/147 (9%), Positives = 43/147 (29%), Gaps = 5/147 (3%)
Query: 74 KLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-----LSSLFHLKSLFLGG 128
L L + V + + + ++ + LS N + ++S L+
Sbjct: 9 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68
Query: 129 NPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTL 188
V+++I + + ++ + + + D + + + K+ L
Sbjct: 69 IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128
Query: 189 TLCKVINIPESVYMRGMSSQECTIEIN 215
+ + R + +
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAK 155
Score = 32.5 bits (72), Expect = 0.048
Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 2 LSHLKTLDLSHNKLVSDSLP-----LFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLL 56
L+TL L +N++ D++ + M L L L+ N+ + D
Sbjct: 272 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR 331
Query: 57 GFNKINNMEND 67
G +++ +++
Sbjct: 332 GRGELDELDDM 342
Score = 31.4 bits (69), Expect = 0.089
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 64 MENDYFLTLTKLSLLNLKNNKISE------VSSNVGDLINLAILDLSDNELTDVPCELSS 117
++ L L L L+ N+I + + +L L+L+ N ++ +
Sbjct: 264 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDE 323
Query: 118 LFHLKSL 124
+ + S
Sbjct: 324 IREVFST 330
Score = 30.2 bits (66), Expect = 0.21
Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 7/88 (7%)
Query: 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT------MLPVCTDCKNLTHLLLG 57
LK ++ S L + S+ E+ LS N + + K+L
Sbjct: 9 SLKLDAITTEDEKSVFAVLL-EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67
Query: 58 FNKINNMENDYFLTLTKLSLLNLKNNKI 85
++++ L L LK K+
Sbjct: 68 DIFTGRVKDEIPEALRLLLQALLKCPKL 95
Score = 29.5 bits (64), Expect = 0.45
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 48 CKNLTHLLLGFNKINN-----MENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINL 98
L L L +N+I ++ + L L L N+ SE V ++ +
Sbjct: 272 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 327
Score = 27.5 bits (59), Expect = 1.7
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 7/67 (10%)
Query: 95 LINLAILDLSDNELTD------VPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISH 148
I L L L NE+ + L L L GN +D++ + + + S
Sbjct: 272 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE-EDDVVDEIREVFST 330
Query: 149 IKTSRLD 155
LD
Sbjct: 331 RGRGELD 337
Score = 25.2 bits (53), Expect = 8.5
Identities = 6/46 (13%), Positives = 14/46 (30%), Gaps = 4/46 (8%)
Query: 2 LSHLKTLDLSHNKLVSDSL----PLFIDMRSLTELNLSYNQLTMLP 43
+K + LS N + +++ + L S +
Sbjct: 30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVK 75
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 32.7 bits (73), Expect = 0.025
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 19 SLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHL 54
L ++ +L L++S N+++ + V NL L
Sbjct: 164 DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 199
Score = 31.6 bits (70), Expect = 0.064
Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
L+ L + D+ +T L + + NLT + N++
Sbjct: 17 LAEKMKTVLGKTNV--TDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL 74
Query: 62 NNM 64
++
Sbjct: 75 TDI 77
Score = 30.0 bits (66), Expect = 0.20
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 90 SNVGDLINLAILDLSDNELTDVPCELSSLFHLKSL 124
+ +L L LD+S N+++D+ L+ L +L+SL
Sbjct: 166 KPLANLTTLERLDISSNKVSDIS-VLAKLTNLESL 199
Score = 30.0 bits (66), Expect = 0.21
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 26 MRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNN 83
+ + L +T TD +T L I +++ L L+ +N NN
Sbjct: 17 LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNN 72
Score = 26.9 bits (58), Expect = 2.2
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTEL 32
L+ L+ LD+S NK+ + + + +L L
Sbjct: 171 LTTLERLDISSNKV--SDISVLAKLTNLESL 199
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 32.8 bits (73), Expect = 0.034
Identities = 10/79 (12%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT---MLPVCTDCKNLTHLLLGFNK 60
+ + + L + ++LS + + + + + C L +L L +
Sbjct: 24 GVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82
Query: 61 INNMENDYFLTLTKLSLLN 79
+++ + + L LN
Sbjct: 83 LSDPIVNTLAKNSNLVRLN 101
Score = 31.6 bits (70), Expect = 0.088
Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 4/123 (3%)
Query: 6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQL-TMLPVCTDCKNLTHLLLGFNKINNM 64
+TLDL+ L D + + + + + L + H+ L + I
Sbjct: 3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61
Query: 65 ENDYFLT-LTKLSLLNLKNNKISEVS-SNVGDLINLAILDLSDNELTDVPCELSSLFHLK 122
L+ +KL L+L+ ++S+ + + NL L+LS + L
Sbjct: 62 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121
Query: 123 SLF 125
L
Sbjct: 122 RLD 124
Score = 29.3 bits (64), Expect = 0.39
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLT--MLPVCTDCKNLTHL 54
++ +DLS++ + +L + L L+L +L+ ++ NL L
Sbjct: 45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 100
Score = 28.5 bits (62), Expect = 0.79
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 70 LTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTD--VPCELSSLFHLKSLFLG 127
L + + + + + + +DLS++ + + LS L++L L
Sbjct: 20 LLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 79
Query: 128 GNPI 131
G +
Sbjct: 80 GLRL 83
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 28.9 bits (63), Expect = 0.50
Identities = 29/150 (19%), Positives = 57/150 (38%), Gaps = 1/150 (0%)
Query: 2 LSHLKTLDLSHNKLVSDSLPLFID-MRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
+ + ++L + + + +++ L LS N + + + +NL L LG N
Sbjct: 22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNL 81
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
I +EN + T L N S + + + + +L++L
Sbjct: 82 IKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141
Query: 121 LKSLFLGGNPIKTVRNDILQDSKRIISHIK 150
L+ L L GNP+ + S+ I +K
Sbjct: 142 LEDLLLAGNPLYNDYKENNATSEYRIEVVK 171
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 28.6 bits (62), Expect = 0.51
Identities = 28/135 (20%), Positives = 46/135 (34%), Gaps = 3/135 (2%)
Query: 3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNK 60
L + + + L + L L L +L + +
Sbjct: 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67
Query: 61 INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
+ + D F +LS LNL N + +S ++L L LS N L C L L
Sbjct: 68 LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL-HCSCALRWLQR 126
Query: 121 LKSLFLGGNPIKTVR 135
+ LGG P + ++
Sbjct: 127 WEEEGLGGVPEQKLQ 141
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 27.1 bits (58), Expect = 1.7
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 1/87 (1%)
Query: 23 FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN 82
F+ + L LNL NQ++ + + ++L L N + L L
Sbjct: 98 FLGLHQLKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSL 156
Query: 83 NKISEVSSNVGDLINLAILDLSDNELT 109
N + + ++ I DL +E
Sbjct: 157 NGGAARCGAPSKVRDVQIKDLPHSEFK 183
Score = 25.9 bits (55), Expect = 4.1
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Query: 6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKN---LTHLLLGFNKIN 62
T+D + L +P I TEL L+ N+L + L L L N++
Sbjct: 11 TTVDCTGRGL--KEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67
Query: 63 NMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVP 112
+E + F + + L L NKI E+S+ + L L L+L DN+++ V
Sbjct: 68 GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118
>d1kfwa1 c.1.8.5 (A:10-327,A:389-444) Psychrophilic chitinase B
{Arthrobacter sp., tad20 [TaxId: 1667]}
Length = 374
Score = 27.2 bits (59), Expect = 2.4
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 38 QLTMLPVCTDCKNLTHLLLGFNKINN 63
Q L V KNLTH+ F INN
Sbjct: 26 QAKQLDVSGTAKNLTHINYSFGNINN 51
>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal
domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 282
Score = 25.8 bits (56), Expect = 5.1
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 144 RIISHIKTS----RLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLCKVINIPES 199
+IIS I+ R D + DG ++ + EI +K L + + C P
Sbjct: 152 KIISKIENHEGVRRFDEILEASDGIMVARGDLGIEIPAEKVFLAQKMIIGRCNRAGKPVI 211
Query: 200 VYMRGMSSQ 208
+ + S
Sbjct: 212 CATQMLESM 220
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.390
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 896,883
Number of extensions: 38255
Number of successful extensions: 329
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 117
Length of query: 263
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 179
Effective length of database: 1,254,276
Effective search space: 224515404
Effective search space used: 224515404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)