BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3790
(253 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28EW0|TM87A_XENTR Transmembrane protein 87A OS=Xenopus tropicalis GN=tmem87a PE=2
SV=1
Length = 541
Score = 246 bits (629), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 127/258 (49%), Positives = 180/258 (69%), Gaps = 15/258 (5%)
Query: 1 MLVIVVSLGFGIVKPRLGAMLHRVVVVGVLYFCLYLISLFIRIYDDRSN--MLLSSIPLA 58
+LV +VSLG+GI+KPRLGA++HRVV +GVLYF + +RI + +LL+ IPLA
Sbjct: 294 LLVTIVSLGYGIIKPRLGAVMHRVVGMGVLYFVFAAVEGVMRIIGAKEYDLVLLAGIPLA 353
Query: 59 LLDSTICWWIFTSLVHTIRTLRLRHNLVKLTLYTHFMHTLTFAVLASVVFMLYSIKEHRL 118
LLDS +CWWIF SL T++TL+LR N VK +LY HF +TL FA+LAS++FM++ K+ +L
Sbjct: 354 LLDSGLCWWIFVSLAQTMKTLKLRKNTVKYSLYRHFTNTLIFAILASIIFMIWRTKKFQL 413
Query: 119 ALCLTHWKELWIDDAYWHLLFSLILVVIMILWRPMNNSQRYAFTPLLDPTLDEEDDEEVE 178
C W ELW+DDAYW LF +IL+VIM LWRP N+QRYAFTPL+D + D+EVE
Sbjct: 414 VDCQADWMELWVDDAYWRFLFFIILLVIMFLWRPSANNQRYAFTPLID-----DSDDEVE 468
Query: 179 QFINQNMV--GMKMRP-PPEDSTSPKPRPHPSSTLSPQEDLDRACQAVMPSLLDSTVLPL 235
+F+ + + GMK+R PE + +PKP P++ + EDL + + S D+ + L
Sbjct: 469 EFLVTDHLAEGMKLRGTKPECNGAPKP---PATNI--DEDLKWVEENIPSSFADAALPVL 523
Query: 236 LDSDEELMNTRFEVSKMQ 253
+DSDEE+M T++E+SK++
Sbjct: 524 MDSDEEIMMTKYEMSKIE 541
>sp|Q8BXN9|TM87A_MOUSE Transmembrane protein 87A OS=Mus musculus GN=Tmem87a PE=1 SV=1
Length = 555
Score = 224 bits (572), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 123/255 (48%), Positives = 173/255 (67%), Gaps = 13/255 (5%)
Query: 2 LVIVVSLGFGIVKPRLGAMLHRVVVVGVLYFCLYLISLFIRIYDDRSNML-LSSIPLALL 60
LVI+VSLG+GIVKPRLG LH+VVV G LY + +R+ ++++ L+ IPLA L
Sbjct: 311 LVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTGAQTDLASLAFIPLAFL 370
Query: 61 DSTICWWIFTSLVHTIRTLRLRHNLVKLTLYTHFMHTLTFAVLASVVFMLYSIKEHRLAL 120
D+ +CWWIF SL T++ L+LR N+VKL+LY HF +TL AV AS+VF++++ + R+
Sbjct: 371 DTALCWWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVFIIWTTMKFRIVT 430
Query: 121 CLTHWKELWIDDAYWHLLFSLILVVIMILWRPMNNSQRYAFTPLLDPTLDEEDDEEVEQF 180
C + W+ELW+DDA W LLFS+IL VIMILWRP N+QR+AF+PL + ++E+DE+ E
Sbjct: 431 CQSDWRELWVDDAIWRLLFSMILFVIMILWRPSANNQRFAFSPL---SEEDEEDEQKEPM 487
Query: 181 INQNMVGMKMRPPPEDSTSPKPRPHPSSTLS-PQEDLDRACQAVMPSLLDSTVLP-LLDS 238
+ ++ GMKMR S K P+ +S ++ QED + + +PS + LP LLDS
Sbjct: 488 LKESFEGMKMR-------STKQEPNGTSKVNKAQEDDLKWVEENVPSSVTDVALPALLDS 540
Query: 239 DEELMNTRFEVSKMQ 253
DEE M T FE SKM+
Sbjct: 541 DEERMITHFERSKME 555
>sp|Q8NBN3|TM87A_HUMAN Transmembrane protein 87A OS=Homo sapiens GN=TMEM87A PE=1 SV=3
Length = 555
Score = 221 bits (563), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 120/253 (47%), Positives = 170/253 (67%), Gaps = 9/253 (3%)
Query: 2 LVIVVSLGFGIVKPRLGAMLHRVVVVGVLYFCLYLISLFIRIYDDRSNML-LSSIPLALL 60
LVI+VSLG+GIVKPRLG LH+VVV G LY + +R+ ++++ L+ IPLA L
Sbjct: 311 LVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTGAQTDLASLAFIPLAFL 370
Query: 61 DSTICWWIFTSLVHTIRTLRLRHNLVKLTLYTHFMHTLTFAVLASVVFMLYSIKEHRLAL 120
D+ +CWWIF SL T++ L+LR N+VKL+LY HF +TL AV AS+VF++++ + R+
Sbjct: 371 DTALCWWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVFIIWTTMKFRIVT 430
Query: 121 CLTHWKELWIDDAYWHLLFSLILVVIMILWRPMNNSQRYAFTPLLDPTLDEEDDEEVEQF 180
C + W+ELW+DDA W LLFS+IL VIM+LWRP N+QR+AF+PL + +EE+DE+ E
Sbjct: 431 CQSDWRELWVDDAIWRLLFSMILFVIMVLWRPSANNQRFAFSPL---SEEEEEDEQKEPM 487
Query: 181 INQNMVGMKMRPPPEDSTSPKPRPHPSSTLSPQEDLDRACQAVMPSLLDSTVLPLLDSDE 240
+ ++ GMKMR ST +P + + ++DL + V S+ D + LLDSDE
Sbjct: 488 LKESFEGMKMR-----STKQEPNGNSKVNKAQEDDLKWVEENVPSSVTDVALPALLDSDE 542
Query: 241 ELMNTRFEVSKMQ 253
E M T FE SKM+
Sbjct: 543 ERMITHFERSKME 555
>sp|Q8BKU8|TM87B_MOUSE Transmembrane protein 87B OS=Mus musculus GN=Tmem87b PE=2 SV=1
Length = 555
Score = 216 bits (551), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 118/256 (46%), Positives = 170/256 (66%), Gaps = 15/256 (5%)
Query: 1 MLVIVVSLGFGIVKPRLGAMLHRVVVVGVLYFCLYLISLFIRIYDDRSNM--LLSSIPLA 58
+LVI+VSLG+GIVKPRLG ++HRV+ +G+LY I +R+ ++ +L+ I LA
Sbjct: 301 LLVIIVSLGYGIVKPRLGTVMHRVIGLGLLYLIFAAIEGVMRVIGGSKHLAVVLTDIVLA 360
Query: 59 LLDSTICWWIFTSLVHTIRTLRLRHNLVKLTLYTHFMHTLTFAVLASVVFMLYSIKEHRL 118
++DS W+IF SL T++TLRLR N VK +LY HF +TL FAVLAS+VFM+++ K R+
Sbjct: 361 VIDSIFVWFIFISLAQTMKTLRLRKNTVKFSLYRHFTNTLIFAVLASIVFMVWTTKTFRI 420
Query: 119 ALCLTHWKELWIDDAYWHLLFSLILVVIMILWRPMNNSQRYAFTPLLDPTLDEEDDEEVE 178
A C + W ELW+DDA+W LFS+IL+VIM LWRP N+QRYAF PL+D + D+EVE
Sbjct: 421 AKCQSDWMELWVDDAFWSFLFSVILIVIMFLWRPSANNQRYAFMPLID-----DSDDEVE 475
Query: 179 QFI--NQNMV-GMKMRPPPEDSTSPKPRPHPSSTLSPQEDLDRACQAVMPSLLDSTVLPL 235
+F+ ++N+ G+K+R T P+S + EDL + + S D + L
Sbjct: 476 EFMVTSENLTEGIKLRASK---TVSNGTAKPTSD-NFDEDLKWVEENIPSSFTDVALPVL 531
Query: 236 LDSDEELMNTRFEVSK 251
+DSDEE+M TR E+++
Sbjct: 532 VDSDEEIM-TRSEIAE 546
>sp|Q96K49|TM87B_HUMAN Transmembrane protein 87B OS=Homo sapiens GN=TMEM87B PE=1 SV=1
Length = 555
Score = 214 bits (546), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 115/256 (44%), Positives = 169/256 (66%), Gaps = 14/256 (5%)
Query: 1 MLVIVVSLGFGIVKPRLGAMLHRVVVVGVLYFCLYLISLFIRIYDDRSNM--LLSSIPLA 58
+LVI+VSLG+GIVKPRLG ++HRV+ +G+LY + +R+ +++ +L I LA
Sbjct: 300 LLVIIVSLGYGIVKPRLGTVMHRVIGLGLLYLIFAAVEGVMRVIGGSNHLAVVLDDIILA 359
Query: 59 LLDSTICWWIFTSLVHTIRTLRLRHNLVKLTLYTHFMHTLTFAVLASVVFMLYSIKEHRL 118
++DS W+IF SL T++TLRLR N VK +LY HF +TL FAVLAS+VFM ++ K R+
Sbjct: 360 VIDSIFVWFIFISLAQTMKTLRLRKNTVKFSLYRHFKNTLIFAVLASIVFMGWTTKTFRI 419
Query: 119 ALCLTHWKELWIDDAYWHLLFSLILVVIMILWRPMNNSQRYAFTPLLDPTLDEEDDEEVE 178
A C + W E W+DDA+W LFSLIL+VIM LWRP N+QRYAF PL+D + D+E+E
Sbjct: 420 AKCQSDWMERWVDDAFWSFLFSLILIVIMFLWRPSANNQRYAFMPLID-----DSDDEIE 474
Query: 179 QFI--NQNMV-GMKMRPPPEDSTSPKPRPHPSSTLSPQEDLDRACQAVMPSLLDSTVLPL 235
+F+ ++N+ G+K+R S P+++ + EDL + + S D + L
Sbjct: 475 EFMVTSENLTEGIKLRASKSVSNGT---AKPATSENFDEDLKWVEENIPSSFTDVALPVL 531
Query: 236 LDSDEELMNTRFEVSK 251
+DSDEE+M TR E+++
Sbjct: 532 VDSDEEIM-TRSEMAE 546
>sp|O13989|YEG7_SCHPO Uncharacterized protein C26H5.07c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC26H5.07c PE=3 SV=2
Length = 505
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 101/184 (54%), Gaps = 17/184 (9%)
Query: 1 MLVIVVSLGFGIVKPRLGAMLHRVVVVGVLYF---CLYLISLFIRIYDDRSNMLLSSIPL 57
L+++VSLG+ IV P LG++L + ++ L F C +L SLFI + S ++L + P+
Sbjct: 266 FLLLIVSLGYSIVVPSLGSLLRKCQILAGLQFVSSCFFLSSLFISPSNKESLVILFAAPV 325
Query: 58 ALLD-STICWWIFTSLVHTIRTLRLRHNLVKLTLYTHFMHTLTFAVLA--------SVVF 108
L+ + WI +L +TIR LR+R VK +YT + F ++A +++
Sbjct: 326 FLITLFAMFLWIVLALNNTIRDLRIRKQTVKAQMYTRLWIVICFGIVAYASIVAANAILI 385
Query: 109 MLYSIKEHRLALCLTHWKELW-IDDAYWHLLFSLILVVIMILWRPMNNSQRYAFTPLLDP 167
+Y ++ L +WK LW ++ Y +L ++++ I+ LWRP N++R+A + +
Sbjct: 386 GIYG----QMNYYLKYWKLLWFLNYGYTDILVLILMLTILYLWRPTENNRRFAMSEQVAQ 441
Query: 168 TLDE 171
+DE
Sbjct: 442 DVDE 445
>sp|A6ZZS6|PTM1_YEAS7 Membrane protein PTM1 OS=Saccharomyces cerevisiae (strain YJM789)
GN=PTM1 PE=3 SV=1
Length = 523
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 115/243 (47%), Gaps = 29/243 (11%)
Query: 1 MLVIVVSLGFGIVKPRLG-AMLHRVVVVGVLYFCL---YLISLFIRIYDDRSNMLLSS-I 55
L+++++LG+GIV P+L ++ R + G L + + +LI ++ + S ++L + I
Sbjct: 281 FLLLIIALGYGIVYPKLNKTLMRRCQMYGALTYAICIGFLIQSYLTDMEAPSPLILITLI 340
Query: 56 PLALLDSTICWWIFTSLVHTIRTLRLRHNLVKLTLYTHFMHTLTFAVL----ASVVFMLY 111
P+AL + I S+ T+ L+ + +VKL +Y ++ + + L S+V
Sbjct: 341 PMALALIIFYYMIIRSMTKTVIYLKEQRQIVKLNMYKKLLYIIYASFLSVLAGSIVSSFI 400
Query: 112 SIKEHRLALCLTHWKELWIDDAYW-HLLFSLILVVIMILWRPMNNSQRYAFTPLL--DP- 167
+ + + + +W+ + +W L++ ++ V I LWRP + S A + L DP
Sbjct: 401 YVGMNTIDMIEKNWRSRFFVTDFWPTLVYFIVFVTIAFLWRPTDTSYMLAASQQLPTDPE 460
Query: 168 -----------TLDEEDDEEV---EQFINQNMVGMKMRPPPE--DSTSPKPRPHPSSTLS 211
+ D++DD + E+ I+++ + + E D+ + + H + S
Sbjct: 461 NVADFDLGDLQSFDDQDDASIITGERGIDEDDLNLNFTDDEEGHDNVNNHSQGHGPVSPS 520
Query: 212 PQE 214
P +
Sbjct: 521 PTK 523
>sp|P32857|PTM1_YEAST Membrane protein PTM1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PTM1 PE=1 SV=2
Length = 523
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 115/243 (47%), Gaps = 29/243 (11%)
Query: 1 MLVIVVSLGFGIVKPRLG-AMLHRVVVVGVLYFCL---YLISLFIRIYDDRSNMLLSS-I 55
L+++++LG+GIV P+L ++ R + G L + + +LI ++ + S ++L + I
Sbjct: 281 FLLLIIALGYGIVYPKLNKTLMRRCQMYGALTYAICIGFLIQSYLTDMEAPSPLILITLI 340
Query: 56 PLALLDSTICWWIFTSLVHTIRTLRLRHNLVKLTLYTHFMHTLTFAVL----ASVVFMLY 111
P+AL + I S+ T+ L+ + +VKL +Y ++ + + L S+V
Sbjct: 341 PMALALIIFYYMIIRSMTKTVIYLKEQRQIVKLNMYKKLLYIIYASFLSVLAGSIVSSFI 400
Query: 112 SIKEHRLALCLTHWKELWIDDAYW-HLLFSLILVVIMILWRPMNNSQRYAFTPLL--DP- 167
+ + + + +W+ + +W L++ ++ V I LWRP + S A + L DP
Sbjct: 401 YVGMNTIDMIEKNWRSRFFVTDFWPTLVYFIVFVTIAFLWRPTDTSYMLAASQQLPTDPE 460
Query: 168 -----------TLDEEDDEEV---EQFINQNMVGMKMRPPPE--DSTSPKPRPHPSSTLS 211
+ D++DD + E+ I+++ + + E D+ + + H + S
Sbjct: 461 NVADFDLGDLQSFDDQDDASIITGERGIDEDDLNLNFTDDEEGHDNVNNHSQGHGPVSPS 520
Query: 212 PQE 214
P +
Sbjct: 521 PTK 523
>sp|P38745|YHB7_YEAST Uncharacterized membrane protein YHL071W OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YHL017W PE=1
SV=1
Length = 532
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 104/250 (41%), Gaps = 18/250 (7%)
Query: 9 GFGIVKPRLG-AMLHRVVVVGVLYFCLYLISLFIRIYDDRSN-----MLLSSIPLALLDS 62
G+GIV P+L +L R + + F + ++ ++ Y S +L+++IPL L
Sbjct: 286 GYGIVYPKLDRTLLRRCQIFAIFTFAV-CVAFLVQKYSQNSESLSNLILITAIPLVLCLF 344
Query: 63 TICWWIFTSLVHTIRTLRLRHNLVKLTLYTHFM----HTLTFAVLASVVFMLYSIKEHRL 118
+ +S+ T+ LR ++ +VKL +Y + +L L +V + +
Sbjct: 345 AFYYLTLSSMNKTMTYLREQNQVVKLNMYRKLIILCYISLFILFLGLLVSTFAYVGMDTV 404
Query: 119 ALCLTHWK-ELWIDDAYWHLLFSLILVVIMILWRPMNNSQRYAFTPLLDPTLDEEDDEEV 177
+ +WK E I D + ++ L+ V+ WRP + S A + L PT D E V
Sbjct: 405 DMIEQYWKTEFLITDTWPSFVYFLVFVIFAFFWRPTSTSYLLACSHQL-PT----DMENV 459
Query: 178 EQFINQNMVGMKMRPPPEDSTSPKPRPHPSS-TLSPQEDLDRACQAVMPSLLDSTVLPLL 236
+F ++ + P + H + + D + + ++ VL +
Sbjct: 460 SEFDLDDINSLSDEALPNREPRNDYQEHDHNMDIDLASDFEEVPSVNANTNANNDVLFDV 519
Query: 237 DSDEELMNTR 246
D D + N R
Sbjct: 520 DYDRDAKNDR 529
>sp|Q67C55|ATG11_PICAN Autophagy-related protein 11 OS=Pichia angusta GN=ATG11 PE=3 SV=1
Length = 1299
Score = 36.6 bits (83), Expect = 0.17, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 173 DDEEVEQFINQNMVGMKMRP--PPEDSTSPKPRPHPSSTLSPQE 214
D+E E+FIN+NM+ K+ SP P HP+S +S QE
Sbjct: 553 DEEARERFINENMLSYKLEQVDAIRSKKSPSPVDHPASPVSGQE 596
>sp|Q2UQV7|AGDC_ASPOR Probable alpha/beta-glucosidase agdC OS=Aspergillus oryzae (strain
ATCC 42149 / RIB 40) GN=agdC PE=3 SV=1
Length = 877
Score = 36.6 bits (83), Expect = 0.18, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 23/97 (23%)
Query: 134 YWHLLFSLIL-----VVIMILWRPMNNSQRYAFTPLLDPTLDEEDDEEVEQFINQNMVGM 188
YW+ FS V I LW MN + + P DP E++ ++N +
Sbjct: 399 YWNSEFSTFFNAETGVDIDGLWIDMNEASNFCPDPCTDP----------ERYSSEN--NL 446
Query: 189 KMRPPPEDSTSPKPRP------HPSSTLSPQEDLDRA 219
PPP S+SP+P P PSS Q+ + +A
Sbjct: 447 PPAPPPVRSSSPRPLPGFPADFQPSSASRSQKRIVKA 483
>sp|B8MZ41|AGDC_ASPFN Probable alpha/beta-glucosidase agdC OS=Aspergillus flavus (strain
ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC
167) GN=agdC PE=3 SV=1
Length = 877
Score = 36.6 bits (83), Expect = 0.18, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 23/97 (23%)
Query: 134 YWHLLFSLIL-----VVIMILWRPMNNSQRYAFTPLLDPTLDEEDDEEVEQFINQNMVGM 188
YW+ FS V I LW MN + + P DP E++ ++N +
Sbjct: 399 YWNSEFSTFFNAETGVDIDGLWIDMNEASNFCPDPCTDP----------ERYSSEN--NL 446
Query: 189 KMRPPPEDSTSPKPRP------HPSSTLSPQEDLDRA 219
PPP S+SP+P P PSS Q+ + +A
Sbjct: 447 PPAPPPVRSSSPRPLPGFPADFQPSSASRSQKRIVKA 483
>sp|A4WVL6|RPOB_RHOS5 DNA-directed RNA polymerase subunit beta OS=Rhodobacter sphaeroides
(strain ATCC 17025 / ATH 2.4.3) GN=rpoB PE=3 SV=1
Length = 1377
Score = 35.8 bits (81), Expect = 0.29, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 166 DPTLDEEDDEEVEQFINQNMVGMKMRPPPED----STSPKPRPHPSSTLSPQEDLDRACQ 221
+ TLDEE V I+ G M PP+ SPK +++L P + D A +
Sbjct: 640 NATLDEEG-RFVSDLISSRKAGEFMLNPPDAIDLIDVSPKQLVSVAASLIPFLENDDANR 698
Query: 222 AVMPSLLDSTVLPLLDSDEELMNTRFE 248
A+M S + +PLL SD + T E
Sbjct: 699 ALMGSNMQRQAVPLLQSDAPFVGTGIE 725
>sp|B9KL83|RPOB_RHOSK DNA-directed RNA polymerase subunit beta OS=Rhodobacter sphaeroides
(strain KD131 / KCTC 12085) GN=rpoB PE=3 SV=1
Length = 1377
Score = 33.9 bits (76), Expect = 1.2, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 169 LDEEDDEEVEQFINQNMVGMKMRPPPED----STSPKPRPHPSSTLSPQEDLDRACQAVM 224
LDEE V I+ G M PP+ SPK +++L P + D A +A+M
Sbjct: 643 LDEEG-RFVSDLISSRKAGEFMLNPPDAIDLIDVSPKQLVSVAASLIPFLENDDANRALM 701
Query: 225 PSLLDSTVLPLLDSDEELMNTRFE 248
S + +PLL SD + T E
Sbjct: 702 GSNMQRQAVPLLQSDAPFVGTGIE 725
>sp|Q3J5T0|RPOB_RHOS4 DNA-directed RNA polymerase subunit beta OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=rpoB PE=3 SV=1
Length = 1377
Score = 33.9 bits (76), Expect = 1.2, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 169 LDEEDDEEVEQFINQNMVGMKMRPPPED----STSPKPRPHPSSTLSPQEDLDRACQAVM 224
LDEE V I+ G M PP+ SPK +++L P + D A +A+M
Sbjct: 643 LDEEG-RFVSDLISSRKAGEFMLNPPDAIDLIDVSPKQLVSVAASLIPFLENDDANRALM 701
Query: 225 PSLLDSTVLPLLDSDEELMNTRFE 248
S + +PLL SD + T E
Sbjct: 702 GSNMQRQAVPLLQSDAPFVGTGIE 725
>sp|A3PGI9|RPOB_RHOS1 DNA-directed RNA polymerase subunit beta OS=Rhodobacter sphaeroides
(strain ATCC 17029 / ATH 2.4.9) GN=rpoB1 PE=3 SV=1
Length = 1377
Score = 33.9 bits (76), Expect = 1.2, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 169 LDEEDDEEVEQFINQNMVGMKMRPPPED----STSPKPRPHPSSTLSPQEDLDRACQAVM 224
LDEE V I+ G M PP+ SPK +++L P + D A +A+M
Sbjct: 643 LDEEG-RFVSDLISSRKAGEFMLNPPDAIDLIDVSPKQLVSVAASLIPFLENDDANRALM 701
Query: 225 PSLLDSTVLPLLDSDEELMNTRFE 248
S + +PLL SD + T E
Sbjct: 702 GSNMQRQAVPLLQSDAPFVGTGIE 725
>sp|Q8R4U7|LUZP1_MOUSE Leucine zipper protein 1 OS=Mus musculus GN=Luzp1 PE=1 SV=2
Length = 1068
Score = 33.9 bits (76), Expect = 1.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 170 DEEDDEEVEQFINQNMVGMKMRPPPEDSTSPKPRPH 205
D +DD ++E F+ +V + P PE PKP+P+
Sbjct: 659 DSDDDLDIESFVTAKLVNTTITPEPE----PKPQPN 690
>sp|B0VDI0|RPOB_ACIBY DNA-directed RNA polymerase subunit beta OS=Acinetobacter baumannii
(strain AYE) GN=rpoB PE=3 SV=1
Length = 1362
Score = 33.1 bits (74), Expect = 1.9, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 171 EEDDEEVEQFINQNMVGMKMRPPPEDST----SPKPRPHPSSTLSPQEDLDRACQAVMPS 226
++D E+F++ G +R PPE T S + +++L P + D A +A+M S
Sbjct: 633 DKDGNLTEEFVSVRHQGEFVRMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGS 692
Query: 227 LLDSTVLPLLDSDEELMNTRFEVS 250
+ +P L +D+ L+ T E +
Sbjct: 693 NMQRQAVPTLRADKPLVGTGMEAN 716
>sp|A3M1G3|RPOB_ACIBT DNA-directed RNA polymerase subunit beta OS=Acinetobacter baumannii
(strain ATCC 17978 / NCDC KC 755) GN=rpoB PE=3 SV=2
Length = 1357
Score = 33.1 bits (74), Expect = 1.9, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 171 EEDDEEVEQFINQNMVGMKMRPPPEDST----SPKPRPHPSSTLSPQEDLDRACQAVMPS 226
++D E+F++ G +R PPE T S + +++L P + D A +A+M S
Sbjct: 633 DKDGNLTEEFVSVRHQGEFVRMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGS 692
Query: 227 LLDSTVLPLLDSDEELMNTRFEVS 250
+ +P L +D+ L+ T E +
Sbjct: 693 NMQRQAVPTLRADKPLVGTGMEAN 716
>sp|B0VLZ6|RPOB_ACIBS DNA-directed RNA polymerase subunit beta OS=Acinetobacter baumannii
(strain SDF) GN=rpoB PE=3 SV=1
Length = 1362
Score = 33.1 bits (74), Expect = 1.9, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 171 EEDDEEVEQFINQNMVGMKMRPPPEDST----SPKPRPHPSSTLSPQEDLDRACQAVMPS 226
++D E+F++ G +R PPE T S + +++L P + D A +A+M S
Sbjct: 633 DKDGNLTEEFVSVRHQGEFVRMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGS 692
Query: 227 LLDSTVLPLLDSDEELMNTRFEVS 250
+ +P L +D+ L+ T E +
Sbjct: 693 NMQRQAVPTLRADKPLVGTGMEAN 716
>sp|B2I1Z1|RPOB_ACIBC DNA-directed RNA polymerase subunit beta OS=Acinetobacter baumannii
(strain ACICU) GN=rpoB PE=3 SV=1
Length = 1362
Score = 33.1 bits (74), Expect = 1.9, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 171 EEDDEEVEQFINQNMVGMKMRPPPEDST----SPKPRPHPSSTLSPQEDLDRACQAVMPS 226
++D E+F++ G +R PPE T S + +++L P + D A +A+M S
Sbjct: 633 DKDGNLTEEFVSVRHQGEFVRMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGS 692
Query: 227 LLDSTVLPLLDSDEELMNTRFEVS 250
+ +P L +D+ L+ T E +
Sbjct: 693 NMQRQAVPTLRADKPLVGTGMEAN 716
>sp|B7I360|RPOB_ACIB5 DNA-directed RNA polymerase subunit beta OS=Acinetobacter baumannii
(strain AB0057) GN=rpoB PE=3 SV=1
Length = 1362
Score = 33.1 bits (74), Expect = 1.9, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 171 EEDDEEVEQFINQNMVGMKMRPPPEDST----SPKPRPHPSSTLSPQEDLDRACQAVMPS 226
++D E+F++ G +R PPE T S + +++L P + D A +A+M S
Sbjct: 633 DKDGNLTEEFVSVRHQGEFVRMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGS 692
Query: 227 LLDSTVLPLLDSDEELMNTRFEVS 250
+ +P L +D+ L+ T E +
Sbjct: 693 NMQRQAVPTLRADKPLVGTGMEAN 716
>sp|B7H1J8|RPOB_ACIB3 DNA-directed RNA polymerase subunit beta OS=Acinetobacter baumannii
(strain AB307-0294) GN=rpoB PE=3 SV=1
Length = 1362
Score = 33.1 bits (74), Expect = 1.9, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 171 EEDDEEVEQFINQNMVGMKMRPPPEDST----SPKPRPHPSSTLSPQEDLDRACQAVMPS 226
++D E+F++ G +R PPE T S + +++L P + D A +A+M S
Sbjct: 633 DKDGNLTEEFVSVRHQGEFVRMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGS 692
Query: 227 LLDSTVLPLLDSDEELMNTRFEVS 250
+ +P L +D+ L+ T E +
Sbjct: 693 NMQRQAVPTLRADKPLVGTGMEAN 716
>sp|Q8R7U6|RPOB_THETN DNA-directed RNA polymerase subunit beta OS=Thermoanaerobacter
tengcongensis (strain DSM 15242 / JCM 11007 / NBRC
100824 / MB4) GN=rpoB PE=3 SV=1
Length = 1234
Score = 32.0 bits (71), Expect = 4.0, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 20/100 (20%)
Query: 168 TLDEEDD----------EEVEQFINQNMVGMKMR------PPPE---DSTSPKPRPHPSS 208
T DEED+ +E +FIN +V ++R PP E SPK S+
Sbjct: 585 TADEEDEYIIAQANEPLDENNRFINDRVV-CRLREEIISVPPTEVDFMDVSPKQIVSVSA 643
Query: 209 TLSPQEDLDRACQAVMPSLLDSTVLPLLDSDEELMNTRFE 248
+L P + D A +A+M S + +PLL + ++ T E
Sbjct: 644 SLIPFLENDDANRALMGSNMQRQAVPLLKPEAPIVGTGME 683
>sp|Q28UX7|RPOB_JANSC DNA-directed RNA polymerase subunit beta OS=Jannaschia sp. (strain
CCS1) GN=rpoB PE=3 SV=2
Length = 1385
Score = 32.0 bits (71), Expect = 4.7, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 171 EEDDEEVEQFINQNMVGMKMRPPPED----STSPKPRPHPSSTLSPQEDLDRACQAVMPS 226
++D + V +N M G P E SPK +++L P + D A +A+M S
Sbjct: 644 DDDGKFVNDMVNTRMSGEYTLNPREAIDLIDVSPKQLVSVAASLIPFLENDDANRALMGS 703
Query: 227 LLDSTVLPLLDSDEELMNTRFE 248
+ +PLL +D + T E
Sbjct: 704 NMQRQAVPLLQADAPFVGTGIE 725
>sp|B4R8K5|RPOB_PHEZH DNA-directed RNA polymerase subunit beta OS=Phenylobacterium
zucineum (strain HLK1) GN=rpoB PE=3 SV=1
Length = 1356
Score = 31.6 bits (70), Expect = 6.2, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 172 EDDEEVEQFINQNMVGMKMRPPPED----STSPKPRPHPSSTLSPQEDLDRACQAVMPSL 227
E+ E VE + + G P D SPK +++L P + D A +A+M S
Sbjct: 632 ENGEIVEDLVPGRINGEPSLLPKADVDLMDVSPKQVVSVAASLIPFLENDDANRALMGSN 691
Query: 228 LDSTVLPLLDSDEELMNTRFE 248
+ +PL+ SD L+ T E
Sbjct: 692 MQKQAVPLIQSDAPLVGTGME 712
>sp|Q30X05|RPOB_DESDG DNA-directed RNA polymerase subunit beta OS=Desulfovibrio
desulfuricans (strain G20) GN=rpoB PE=3 SV=1
Length = 1375
Score = 31.6 bits (70), Expect = 6.4, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 173 DDEEVEQFINQNMVGMKMRPPPEDST----SPKPRPHPSSTLSPQEDLDRACQAVMPSLL 228
D V++F+ + G + P E+ T SP S+ L P + D A +A+M S +
Sbjct: 625 DHRFVDEFVTTRVRGDVIMSPREEVTLMDISPSQMVSISAALIPFLEHDDANRALMGSNM 684
Query: 229 DSTVLPLLDSDEELMNTRFE 248
+PLL S + ++ T E
Sbjct: 685 QRQAVPLLRSTKPIVGTGME 704
>sp|Q5LMQ5|RPOB_RUEPO DNA-directed RNA polymerase subunit beta OS=Ruegeria pomeroyi
(strain ATCC 700808 / DSM 15171 / DSS-3) GN=rpoB PE=3
SV=1
Length = 1378
Score = 31.2 bits (69), Expect = 7.7, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 166 DPTLDEEDDEEVEQFINQNMVGMKMRPPPED----STSPKPRPHPSSTLSPQEDLDRACQ 221
+ TLDE + + V + +N G P E SPK +++L P + D A +
Sbjct: 640 NATLDE-NGKFVNELVNTRQAGDYTLAPMESVDLIDVSPKQLVSVAASLIPFLENDDANR 698
Query: 222 AVMPSLLDSTVLPLLDSDEELMNTRFE 248
A+M S + +PLL ++ L+ T E
Sbjct: 699 ALMGSNMQRQAVPLLRAEAPLVGTGIE 725
>sp|B8J1A8|RPOB_DESDA DNA-directed RNA polymerase subunit beta OS=Desulfovibrio
desulfuricans (strain ATCC 27774 / DSM 6949) GN=rpoB
PE=3 SV=1
Length = 1378
Score = 31.2 bits (69), Expect = 8.1, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 169 LDEEDDEEVEQFINQNMVG-MKMRPPPEDS---TSPKPRPHPSSTLSPQEDLDRACQAVM 224
LDE+ + V++F+ + G ++MR E + SP S+ L P + D A +A+M
Sbjct: 625 LDEQGNL-VDEFVTVRVKGEVEMRHRDEVTLMDISPSQMVSISAALIPFLEHDDANRALM 683
Query: 225 PSLLDSTVLPLLDSDEELMNTRFEV 249
S + +PLL S++ L+ T EV
Sbjct: 684 GSNMQRQAVPLLRSEKPLVGTGMEV 708
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.140 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,098,365
Number of Sequences: 539616
Number of extensions: 4003071
Number of successful extensions: 21917
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 21840
Number of HSP's gapped (non-prelim): 79
length of query: 253
length of database: 191,569,459
effective HSP length: 115
effective length of query: 138
effective length of database: 129,513,619
effective search space: 17872879422
effective search space used: 17872879422
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)