Query psy3790
Match_columns 253
No_of_seqs 149 out of 238
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 17:28:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3790.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3790hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2568|consensus 100.0 2.6E-66 5.7E-71 502.6 16.6 226 1-233 286-518 (518)
2 PF06814 Lung_7-TM_R: Lung sev 100.0 1.6E-39 3.4E-44 296.7 13.0 156 2-157 132-295 (295)
3 KOG2569|consensus 99.1 4.2E-12 9.2E-17 120.9 -2.1 153 2-161 259-421 (440)
4 PF10192 GpcrRhopsn4: Rhodopsi 96.9 0.0094 2E-07 54.0 10.4 90 2-95 115-213 (257)
5 PF06664 MIG-14_Wnt-bd: Wnt-bi 88.8 19 0.00042 33.1 15.3 64 21-85 154-229 (298)
6 PF11368 DUF3169: Protein of u 85.2 1.7 3.6E-05 39.3 5.1 19 89-107 7-25 (248)
7 KOG3879|consensus 79.4 22 0.00048 32.8 10.0 46 51-96 86-138 (267)
8 PF05545 FixQ: Cbb3-type cytoc 74.8 4.8 0.0001 27.6 3.5 34 131-164 10-46 (49)
9 PF08372 PRT_C: Plant phosphor 71.4 2.2 4.7E-05 36.8 1.3 15 138-152 4-18 (156)
10 PF03904 DUF334: Domain of unk 69.1 46 0.00099 30.5 9.3 70 69-138 129-212 (230)
11 PF06570 DUF1129: Protein of u 68.6 45 0.00097 29.2 9.1 41 64-110 88-129 (206)
12 COG4736 CcoQ Cbb3-type cytochr 67.4 8 0.00017 28.3 3.4 27 131-157 10-37 (60)
13 CHL00043 cemA envelope membran 60.0 26 0.00056 32.7 6.1 24 50-74 224-247 (261)
14 KOG2678|consensus 59.4 18 0.00038 33.2 4.8 35 82-116 206-240 (244)
15 PF03040 CemA: CemA family; I 55.5 22 0.00047 32.5 4.8 24 50-74 193-216 (230)
16 PRK02507 proton extrusion prot 55.2 30 0.00064 34.4 6.0 24 50-74 385-408 (422)
17 PF05620 DUF788: Protein of un 51.3 1.3E+02 0.0028 25.7 8.7 44 128-175 47-90 (170)
18 PF04276 DUF443: Protein of un 49.4 1.7E+02 0.0037 25.7 9.4 81 24-104 63-149 (199)
19 PRK06231 F0F1 ATP synthase sub 49.2 50 0.0011 29.2 6.0 24 132-155 50-75 (205)
20 KOG3193|consensus 42.5 37 0.0008 35.4 4.5 88 65-155 158-263 (1087)
21 PRK06568 F0F1 ATP synthase sub 42.1 22 0.00048 30.4 2.5 26 130-155 4-31 (154)
22 PF12725 DUF3810: Protein of u 42.0 1.1E+02 0.0023 29.0 7.4 62 51-118 17-82 (318)
23 PRK14471 F0F1 ATP synthase sub 40.2 23 0.0005 29.7 2.4 25 131-155 9-35 (164)
24 PF14812 PBP1_TM: Transmembran 36.3 12 0.00026 29.1 0.0 11 173-183 46-56 (81)
25 PF14362 DUF4407: Domain of un 36.1 3.4E+02 0.0073 24.8 9.6 43 52-94 46-88 (301)
26 PRK14475 F0F1 ATP synthase sub 35.1 30 0.00066 29.3 2.3 23 131-153 9-35 (167)
27 PF06570 DUF1129: Protein of u 34.5 3.1E+02 0.0068 23.9 12.3 44 32-75 91-137 (206)
28 PF04999 FtsL: Cell division p 34.1 1.1E+02 0.0024 23.3 5.2 33 82-114 3-35 (97)
29 PF09753 Use1: Membrane fusion 34.0 94 0.002 28.0 5.4 21 93-113 228-248 (251)
30 PRK13460 F0F1 ATP synthase sub 33.4 33 0.00071 29.2 2.3 25 131-155 17-43 (173)
31 TIGR00769 AAA ADP/ATP carrier 33.2 5.1E+02 0.011 25.9 11.4 49 20-68 5-67 (472)
32 TIGR00739 yajC preprotein tran 32.9 56 0.0012 25.1 3.3 24 52-75 4-27 (84)
33 PF10320 7TM_GPCR_Srsx: Serpen 32.6 58 0.0013 29.2 3.8 20 83-102 178-197 (257)
34 PRK05759 F0F1 ATP synthase sub 32.5 36 0.00079 28.0 2.3 24 132-155 6-31 (156)
35 PLN00151 potassium transporter 32.4 75 0.0016 34.3 5.1 21 131-151 553-573 (852)
36 PF02699 YajC: Preprotein tran 32.1 77 0.0017 24.0 3.9 22 52-73 3-24 (82)
37 PRK03557 zinc transporter ZitB 32.0 4.2E+02 0.0091 24.6 10.9 14 89-102 155-168 (312)
38 PRK12768 CysZ-like protein; Re 31.8 2.3E+02 0.005 25.8 7.6 41 124-165 60-100 (240)
39 KOG4016|consensus 31.7 1E+02 0.0022 28.2 5.1 15 101-115 78-92 (233)
40 PRK13453 F0F1 ATP synthase sub 31.6 37 0.0008 29.0 2.3 23 132-154 20-44 (173)
41 PRK14472 F0F1 ATP synthase sub 31.5 37 0.00079 28.9 2.3 25 131-155 19-45 (175)
42 COG0833 LysP Amino acid transp 31.3 3.9E+02 0.0085 27.6 9.7 21 58-78 406-426 (541)
43 PF06196 DUF997: Protein of un 31.3 1.4E+02 0.0031 22.8 5.3 51 19-69 5-56 (80)
44 TIGR00847 ccoS cytochrome oxid 31.2 63 0.0014 22.9 3.0 19 51-69 4-22 (51)
45 PRK08476 F0F1 ATP synthase sub 31.1 40 0.00087 27.9 2.4 23 133-155 10-34 (141)
46 PF05297 Herpes_LMP1: Herpesvi 30.2 17 0.00037 34.7 0.0 19 131-149 168-186 (381)
47 PF03219 TLC: TLC ATP/ADP tran 30.2 4.8E+02 0.01 26.2 10.2 52 18-69 20-83 (491)
48 PRK13461 F0F1 ATP synthase sub 29.3 44 0.00095 27.9 2.3 23 132-154 7-31 (159)
49 PF15546 DUF4653: Domain of un 29.0 82 0.0018 28.6 4.1 26 70-95 156-190 (239)
50 PRK13454 F0F1 ATP synthase sub 29.0 49 0.0011 28.6 2.6 25 131-155 32-58 (181)
51 PRK15071 lipopolysaccharide AB 28.7 3.9E+02 0.0084 24.8 8.8 56 51-112 62-119 (356)
52 PRK05585 yajC preprotein trans 28.4 92 0.002 25.0 3.9 23 50-72 17-39 (106)
53 PLN00150 potassium ion transpo 27.8 1E+02 0.0022 33.0 5.1 21 131-151 493-513 (779)
54 PRK10573 type IV pilin biogene 27.7 5.3E+02 0.012 24.4 10.8 25 72-96 139-166 (399)
55 PF15473 PCNP: PEST, proteolyt 27.7 25 0.00054 30.2 0.6 27 175-203 102-129 (150)
56 PF14514 TetR_C_9: Transcripti 27.4 1E+02 0.0022 25.3 4.1 25 11-36 67-91 (129)
57 KOG4783|consensus 27.4 90 0.002 25.2 3.6 48 36-83 53-100 (102)
58 PF02705 K_trans: K+ potassium 26.9 87 0.0019 32.1 4.3 24 130-153 409-432 (534)
59 PLN03223 Polycystin cation cha 26.6 1.7E+02 0.0037 33.7 6.6 44 58-101 1176-1221(1634)
60 PRK15120 lipopolysaccharide AB 26.5 5.4E+02 0.012 24.1 9.8 54 51-113 60-118 (366)
61 PF14184 YrvL: Regulatory prot 26.0 3.5E+02 0.0076 22.5 7.1 51 35-85 23-76 (132)
62 PF01306 LacY_symp: LacY proto 25.2 3.8E+02 0.0082 26.4 8.3 26 132-157 168-194 (412)
63 PLN00148 potassium transporter 25.2 1.3E+02 0.0028 32.3 5.3 21 131-151 476-496 (785)
64 PF12606 RELT: Tumour necrosis 24.9 84 0.0018 22.2 2.7 16 154-169 22-37 (50)
65 PRK11281 hypothetical protein; 24.7 7.4E+02 0.016 27.9 11.1 16 26-41 584-599 (1113)
66 PF12794 MscS_TM: Mechanosensi 24.5 6.1E+02 0.013 24.0 10.1 74 83-162 188-261 (340)
67 PLN00149 potassium transporter 24.5 1.3E+02 0.0027 32.4 5.1 21 131-151 480-500 (779)
68 PRK05886 yajC preprotein trans 24.5 1.2E+02 0.0027 24.6 4.0 19 51-69 4-22 (109)
69 PF13239 2TM: 2TM domain 24.2 3E+02 0.0066 20.4 7.3 18 82-99 7-24 (83)
70 CHL00118 atpG ATP synthase CF0 23.6 65 0.0014 26.9 2.4 22 132-153 24-47 (156)
71 KOG1292|consensus 23.6 4.1E+02 0.009 27.2 8.2 108 21-146 347-456 (510)
72 PF06612 DUF1146: Protein of u 23.6 1.8E+02 0.0039 20.1 4.2 42 63-106 5-46 (48)
73 TIGR00794 kup potassium uptake 23.6 1.3E+02 0.0028 31.8 4.9 23 131-153 447-469 (688)
74 PF10031 DUF2273: Small integr 23.4 2.7E+02 0.0058 19.5 5.5 21 129-149 24-44 (51)
75 COG1766 fliF Flagellar basal b 23.4 36 0.00079 34.8 0.9 43 122-164 433-476 (545)
76 PF03597 CcoS: Cytochrome oxid 23.3 1E+02 0.0022 21.2 2.8 18 51-68 3-20 (45)
77 COG3202 ATP/ADP translocase [E 23.2 6.4E+02 0.014 25.9 9.6 51 20-70 25-87 (509)
78 PF03017 Transposase_23: TNP1/ 23.0 25 0.00055 26.5 -0.2 11 147-157 55-65 (73)
79 PF01529 zf-DHHC: DHHC palmito 22.8 3.7E+02 0.0081 21.9 6.8 20 91-110 91-110 (174)
80 PF00430 ATP-synt_B: ATP synth 22.5 62 0.0013 25.5 2.0 22 134-155 3-26 (132)
81 PRK14473 F0F1 ATP synthase sub 22.5 69 0.0015 26.8 2.3 24 132-155 10-35 (164)
82 PF10268 Tmemb_161AB: Predicte 22.4 3E+02 0.0066 27.9 7.2 34 83-116 92-125 (486)
83 cd03501 SQR_TypeA_SdhC_like Su 22.4 3.5E+02 0.0076 20.5 10.6 62 20-81 5-75 (101)
84 PF10749 DUF2534: Protein of u 22.3 3.9E+02 0.0084 20.9 6.6 27 122-148 46-73 (85)
85 PF11045 YbjM: Putative inner 21.9 2E+02 0.0043 24.1 4.8 61 94-156 61-123 (125)
86 PF01534 Frizzled: Frizzled/Sm 21.5 3E+02 0.0066 26.2 6.7 51 51-103 181-235 (328)
87 TIGR01404 FlhB_rel_III type II 21.5 2.8E+02 0.0061 26.6 6.5 20 51-70 190-209 (342)
88 PRK10663 cytochrome o ubiquino 21.4 5.6E+02 0.012 22.5 10.8 58 52-116 63-120 (204)
89 PRK02983 lysS lysyl-tRNA synth 21.3 7.5E+02 0.016 27.6 10.4 31 126-156 200-230 (1094)
90 KOG4581|consensus 21.1 7E+02 0.015 23.5 8.7 16 81-96 326-341 (359)
91 PF10160 Tmemb_40: Predicted m 20.8 7E+02 0.015 23.4 8.6 65 63-131 22-86 (261)
92 PF03268 DUF267: Caenorhabditi 20.8 8E+02 0.017 24.0 14.7 64 51-114 64-134 (353)
93 COG0795 Predicted permeases [G 20.7 1.8E+02 0.004 27.1 5.0 48 10-57 297-347 (364)
94 PF06422 PDR_CDR: CDR ABC tran 20.6 1.3E+02 0.0029 23.6 3.4 31 122-153 46-76 (103)
95 TIGR03321 alt_F1F0_F0_B altern 20.5 75 0.0016 28.6 2.2 24 132-155 7-32 (246)
96 KOG1607|consensus 20.4 5.8E+02 0.013 24.6 8.2 14 69-82 201-214 (318)
97 PF06673 L_lactis_ph-MCP: Lact 20.4 11 0.00024 34.5 -3.1 41 178-227 7-48 (347)
98 KOG0916|consensus 20.2 9.5E+02 0.021 28.1 10.7 9 51-59 1527-1535(1679)
No 1
>KOG2568|consensus
Probab=100.00 E-value=2.6e-66 Score=502.63 Aligned_cols=226 Identities=43% Similarity=0.774 Sum_probs=202.6
Q ss_pred CEEEEEEecccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccCcc-----hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3790 1 MLVIVVSLGFGIVKPRLGAMLHRVVVVGVLYFCLYLISLFIRIYDDRSN-----MLLSSIPLALLDSTICWWIFTSLVHT 75 (253)
Q Consensus 1 ~LlLIVSLGYGVVkP~Lg~~~~rv~~lg~~yfv~~~i~~~~~~~~~~~~-----~l~~~iPla~lds~f~~WIf~SL~~T 75 (253)
+|+||||||||||||+||++++|++++|++||+|+.+.+++++.+..++ ++++++|+|++|++|++|||+||++|
T Consensus 286 ~LlLIVSlGYGIVkP~Lg~~l~rv~~ig~~~~i~s~i~~l~~~~g~~se~~~~~~lf~~ip~ai~d~~f~~wIF~SL~~T 365 (518)
T KOG2568|consen 286 LLLLIVSLGYGIVKPTLGGTLLRVCQIGVIYFIASEILGLARVIGNISELSSLLILFAALPLAILDAAFIYWIFISLAKT 365 (518)
T ss_pred HHHHHHhcCcceEecCcchHHHHHHHHhHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999998887664 67999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccceehhhhhhHHHHHHHHHHHHHHHHhccCCC
Q psy3790 76 IRTLRLRHNLVKLTLYTHFMHTLTFAVLASVVFMLYSIKEHRLALCLTHWKELWIDDAYWHLLFSLILVVIMILWRPMNN 155 (253)
Q Consensus 76 ~~~Lk~rrQ~vKL~mYr~f~~~Li~aVv~Siifiv~s~~~~~~~~~~~~Wk~~Wi~dafW~~Lff~vl~~I~~LWRPT~n 155 (253)
+|+||+|||+|||+|||||+|+|+++|++|++|++|+++.++...|+++||++|+++++|++|||.+|++||+|||||+|
T Consensus 366 lk~Lr~rRn~vKl~lYr~F~n~l~~~Vvas~~~i~~~~~~~~~~~~~~~Wk~~Wv~~a~W~~l~~~iLvvI~~LWrPS~n 445 (518)
T KOG2568|consen 366 LKKLRLRRNIVKLSLYRKFTNTLAFSVVASFAFILVETIFYSIMSCNKDWKERWVDTAFWPLLFFLILVVIMFLWRPSQN 445 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhccHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCchHHHHHhhhhh-ccccccCCCCCCCCC-CCCCCCCCCCCCCcccccchhhccCCcccccccC
Q psy3790 156 SQRYAFTPLLDPTLDEEDDEEVEQFINQN-MVGMKMRPPPEDSTS-PKPRPHPSSTLSPQEDLDRACQAVMPSLLDSTVL 233 (253)
Q Consensus 156 n~ryA~s~~l~~~ede~d~~e~~~~~~~~-~~g~k~r~~~~~~~~-~~~~~~~~~~~~~~~dlkw~veenips~~~~~~~ 233 (253)
|||||+|+|+++++||++ |++...+++ .+|++.|..|..++. .+++. +.+.+||+|| +|+|+|+|.||+++
T Consensus 446 n~ryA~s~l~~d~~ee~~--~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~----~~~~~dDle~-~~~~~~~t~~~~~~ 518 (518)
T KOG2568|consen 446 NQRYAFSPLSDDDEEEEE--EESLDLLESLTEGAKSRADKRKSLGKADPNK----ALNFEDDLEE-VEEEIPSTSADVAL 518 (518)
T ss_pred CcccccccccCCcchhhh--hhhhhhcccccccCccccccccccccccccc----hhchhhhhhc-ccccCccccccCCC
Confidence 999999999998875432 233333343 479999999976654 33331 2467999999 99999999999874
No 2
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=1.6e-39 Score=296.75 Aligned_cols=156 Identities=39% Similarity=0.699 Sum_probs=143.2
Q ss_pred EEEEEEecccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccCcc-------hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3790 2 LVIVVSLGFGIVKPRLGAMLHRVVVVGVLYFCLYLISLFIRIYDDRSN-------MLLSSIPLALLDSTICWWIFTSLVH 74 (253)
Q Consensus 2 LlLIVSLGYGVVkP~Lg~~~~rv~~lg~~yfv~~~i~~~~~~~~~~~~-------~l~~~iPla~lds~f~~WIf~SL~~ 74 (253)
|+++||+|||||||+||+..+|+++++++||+++.+..+.+.....++ .+++++|++++|+++++|||.||.+
T Consensus 132 llllis~Gygivkp~L~~~~~~v~~l~i~~~v~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wi~~sL~~ 211 (295)
T PF06814_consen 132 LLLLISLGYGIVKPSLGRREKKVLMLVILYFVFSNIAYIIREESSPSDSSYASWNFIFFLLPLCILDLFFIVWIFRSLSK 211 (295)
T ss_pred HHHHHhcchheeccccCcceeehhHHHHHHHHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999988887765443332 4799999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhhhcccceehhhhhhHHHHHHHHHHHHHHHHhccC
Q psy3790 75 TIRTLRLRHNLVKLTLYTHFMHTLTFAVLASVVFMLYS-IKEHRLALCLTHWKELWIDDAYWHLLFSLILVVIMILWRPM 153 (253)
Q Consensus 75 T~~~Lk~rrQ~vKL~mYr~f~~~Li~aVv~Siifiv~s-~~~~~~~~~~~~Wk~~Wi~dafW~~Lff~vl~~I~~LWRPT 153 (253)
|+++||+|||++||+|||||++++++++++++++++++ +..++.+.++++||++|+.+++|++++|+++++||++||||
T Consensus 212 t~~~lk~~~q~~KL~lyr~f~~~li~~v~~~~i~~~~~~~~~~~~~~~~~~W~~~W~~~~~~~~l~~~~~~~i~~lwRPs 291 (295)
T PF06814_consen 212 TIRDLKARRQTAKLSLYRRFYNVLIAYVVFSRIFVVLSSIIFNTSDSIEKPWKYQWFIEAFWELLYFVFLVAIMYLWRPS 291 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHhHHHHHHHHHHHHHHHHHHheeCCC
Confidence 99999999999999999999999999999999999887 45556678899999999999999999999999999999999
Q ss_pred CCcc
Q psy3790 154 NNSQ 157 (253)
Q Consensus 154 ~nn~ 157 (253)
+|||
T Consensus 292 ~~n~ 295 (295)
T PF06814_consen 292 ENNQ 295 (295)
T ss_pred CCCc
Confidence 9997
No 3
>KOG2569|consensus
Probab=99.12 E-value=4.2e-12 Score=120.86 Aligned_cols=153 Identities=15% Similarity=0.296 Sum_probs=113.8
Q ss_pred EEEEEEecccccccccchhHHHHHHHHHH-HHHHHHHHHHHHhhccCc-c-----hhHHHHHHHHHHHHH--HHHHHHHH
Q psy3790 2 LVIVVSLGFGIVKPRLGAMLHRVVVVGVL-YFCLYLISLFIRIYDDRS-N-----MLLSSIPLALLDSTI--CWWIFTSL 72 (253)
Q Consensus 2 LlLIVSLGYGVVkP~Lg~~~~rv~~lg~~-yfv~~~i~~~~~~~~~~~-~-----~l~~~iPla~lds~f--~~WIf~SL 72 (253)
.+.+++.||+.+||.|...-+++....+. ..++++++-+...+++.. + ..+.+..+.||.++. +.|-..+|
T Consensus 259 tivligTgwSflk~~l~dkekkv~miviplqvlania~Iv~dEte~~~q~~~tw~~if~lvd~~cc~ai~fpIvwSi~~L 338 (440)
T KOG2569|consen 259 TIVLIGTGWSFLKPKLQDKEKKVLMIVIPLQVLANIASIVTDETEPLTQDWVTWNQIFLLVDLKCCCAILFPIVWSIRHL 338 (440)
T ss_pred EEEeeccCceeechhhccccceEEEEEecHHHHHHhHheeecCCCcchhhhhhhhheeeeecceeeeEEeeeeeeehhhh
Confidence 35678999999999997765555433332 233333333333333322 1 446666666777654 89999999
Q ss_pred HHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccceehhhhhhHHHHHHHHHHHHHHHHhc
Q psy3790 73 VHTIR-TLRLRHNLVKLTLYTHFMHTLTFAVLASVVFMLYSIKEHRLALCLTHWKELWIDDAYWHLLFSLILVVIMILWR 151 (253)
Q Consensus 73 ~~T~~-~Lk~rrQ~vKL~mYr~f~~~Li~aVv~Siifiv~s~~~~~~~~~~~~Wk~~Wi~dafW~~Lff~vl~~I~~LWR 151 (253)
.+|-+ +.|+.+|.+||.++|.|+...++++.++.|++ +. ... ....|++|+..++-++..+++++.+.|.+|
T Consensus 339 ~E~s~tDgkaa~nl~kL~lfrqfyi~vi~yiyftrIvv-~~-----l~~-~~~fky~W~~~~a~E~at~aFy~l~gykFR 411 (440)
T KOG2569|consen 339 RETSKTDGKAAANLIKLPLFRQFYIVVIGYIYFTRIVV-FA-----LKT-IAVFKYQWLSFAAEEMATLAFYVLMGYKFR 411 (440)
T ss_pred hhccCCcchhhcCcccchHHHHHHhhhhhhhhhhhhhh-hh-----hhh-ccceeeeeHHHHHHHHHHHHHHhhheeeee
Confidence 99999 69999999999999999999998888776543 21 111 456789999999999999999999999999
Q ss_pred cCCCcccccc
Q psy3790 152 PMNNSQRYAF 161 (253)
Q Consensus 152 PT~nn~ryA~ 161 (253)
|-+.|..+..
T Consensus 412 P~~~~~Yf~v 421 (440)
T KOG2569|consen 412 PVESNEYFVV 421 (440)
T ss_pred ecccCCcccc
Confidence 9999988764
No 4
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=96.89 E-value=0.0094 Score=53.97 Aligned_cols=90 Identities=21% Similarity=0.357 Sum_probs=55.3
Q ss_pred EEEEEEecccccccccchh-HHHHHHHHHHH----HHHHHHHHHHHhhccCcc----hhHHHHHHHHHHHHHHHHHHHHH
Q psy3790 2 LVIVVSLGFGIVKPRLGAM-LHRVVVVGVLY----FCLYLISLFIRIYDDRSN----MLLSSIPLALLDSTICWWIFTSL 72 (253)
Q Consensus 2 LlLIVSLGYGVVkP~Lg~~-~~rv~~lg~~y----fv~~~i~~~~~~~~~~~~----~l~~~iPla~lds~f~~WIf~SL 72 (253)
|++++|.||.+.|+++... ..+...+.++| .+....++.. ..++.+. --..-.++.++-.+...|...++
T Consensus 115 LLllla~GwTi~~~~~s~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~~d~~~~~~~y~s~pGy~li~lri~~~~~F~~~~ 193 (257)
T PF10192_consen 115 LLLLLAKGWTITRSRLSQSNSVKLIVFIILYVVLQVILFIWENRF-YFDPHSYLYFYDSWPGYILIALRIVLAIWFIYGL 193 (257)
T ss_pred HHHHHHcccccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhc-cCCcccceeecccHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999843 22333444444 4444442221 1222221 23555555566667777776666
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Q psy3790 73 VHTIRTLRLRHNLVKLTLYTHFM 95 (253)
Q Consensus 73 ~~T~~~Lk~rrQ~vKL~mYr~f~ 95 (253)
.+| .+.+|+..|.+-|.+|+
T Consensus 194 ~~t---~~~~~~~~k~~Fy~~f~ 213 (257)
T PF10192_consen 194 YQT---ISKEKDPEKRKFYLPFG 213 (257)
T ss_pred HHH---HHHhcCHHHHHHHHHHH
Confidence 664 55677889999999996
No 5
>PF06664 MIG-14_Wnt-bd: Wnt-binding factor required for Wnt secretion
Probab=88.82 E-value=19 Score=33.14 Aligned_cols=64 Identities=13% Similarity=0.239 Sum_probs=37.5
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHhhccCc-------c--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy3790 21 LHRVVVVGVLY---FCLYLISLFIRIYDDRS-------N--MLLSSIPLALLDSTICWWIFTSLVHTIRTLRLRHNL 85 (253)
Q Consensus 21 ~~rv~~lg~~y---fv~~~i~~~~~~~~~~~-------~--~l~~~iPla~lds~f~~WIf~SL~~T~~~Lk~rrQ~ 85 (253)
..|+...++.+ +++...+......+|.. + ....++-++.+.+ ++.|+....-++.++++.++..
T Consensus 154 ~~ki~~v~~~~~~~~i~~~~~~~~~~~dP~~~~~~~~~~~~~~~~~~~l~~i~~-Y~l~ll~li~rs~~~i~~~~~~ 229 (298)
T PF06664_consen 154 WPKIILVGLFWLFLFIFDIWERGNQLKDPFYSIWVDDPGFNIAKAFIILAGICA-YFLYLLFLIIRSFSEIRNKRYF 229 (298)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCccCcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccccHH
Confidence 34555555544 44455555544444421 1 2333333333333 7889988899999999988876
No 6
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=85.19 E-value=1.7 Score=39.25 Aligned_cols=19 Identities=5% Similarity=0.200 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3790 89 TLYTHFMHTLTFAVLASVV 107 (253)
Q Consensus 89 ~mYr~f~~~Li~aVv~Sii 107 (253)
+..|.+..+++++++-.++
T Consensus 7 ~~~~~~~~illg~~iGg~~ 25 (248)
T PF11368_consen 7 RILRFLLLILLGGLIGGFI 25 (248)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5667777677777665544
No 7
>KOG3879|consensus
Probab=79.40 E-value=22 Score=32.80 Aligned_cols=46 Identities=15% Similarity=0.311 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHH
Q psy3790 51 LLSSIPLALLDSTICWWIFTSLVHTIRTL-------RLRHNLVKLTLYTHFMH 96 (253)
Q Consensus 51 l~~~iPla~lds~f~~WIf~SL~~T~~~L-------k~rrQ~vKL~mYr~f~~ 96 (253)
+..++|+=+.|+..+.-.+..+....+.+ +.||+.++.....-...
T Consensus 86 ~VVFvPlWI~~sil~V~VLy~iv~s~~~lrs~~v~p~~rr~~l~~ai~~i~~V 138 (267)
T KOG3879|consen 86 FVVFVPLWIFDSILLVVVLYKIVWSVLFLRSRDVIPEQRRTHLTMAIWNITIV 138 (267)
T ss_pred EEEeehHHHHHHHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHH
Confidence 46678888888887777766676666667 78888877666554443
No 8
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=74.84 E-value=4.8 Score=27.58 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHHHH-HHHHhccCC--CccccccccC
Q psy3790 131 DDAYWHLLFSLILVV-IMILWRPMN--NSQRYAFTPL 164 (253)
Q Consensus 131 ~dafW~~Lff~vl~~-I~~LWRPT~--nn~ryA~s~~ 164 (253)
...++-++++++|++ +.|.|||.. +..++|..|.
T Consensus 10 ~~~~~~v~~~~~F~gi~~w~~~~~~k~~~e~aa~lpl 46 (49)
T PF05545_consen 10 ARSIGTVLFFVFFIGIVIWAYRPRNKKRFEEAANLPL 46 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHccCc
Confidence 355666677777765 588899974 3346666654
No 9
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=71.39 E-value=2.2 Score=36.78 Aligned_cols=15 Identities=13% Similarity=0.332 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhcc
Q psy3790 138 LFSLILVVIMILWRP 152 (253)
Q Consensus 138 Lff~vl~~I~~LWRP 152 (253)
+|+..|+...|.+|.
T Consensus 4 ~~l~~~~~~~w~yr~ 18 (156)
T PF08372_consen 4 VFLYLFLIGLWNYRF 18 (156)
T ss_pred HHHHHHHHHHhcccc
Confidence 455555555555543
No 10
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=69.12 E-value=46 Score=30.53 Aligned_cols=70 Identities=13% Similarity=0.170 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------hhhhhhhhcccceehhhh-hhH
Q psy3790 69 FTSLVHTIRTLRLRHNLVKLTLYTHFMHTLTFAVLASVVFMLYSI-------------KEHRLALCLTHWKELWID-DAY 134 (253)
Q Consensus 69 f~SL~~T~~~Lk~rrQ~vKL~mYr~f~~~Li~aVv~Siifiv~s~-------------~~~~~~~~~~~Wk~~Wi~-daf 134 (253)
..+..+-+|...++-|..+-.||+.|..++.+.+++.++..+-+= .-+.++..+..|++.|.+ .+.
T Consensus 129 ~~~ml~evK~~~E~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~v 208 (230)
T PF03904_consen 129 NKSMLQEVKQSHEKYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVDHLYKAIASKIKASESFWTYLWYIAYLV 208 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhh
Confidence 445555567777788888899999999888766665555422211 111223346678888864 444
Q ss_pred HHHH
Q psy3790 135 WHLL 138 (253)
Q Consensus 135 W~~L 138 (253)
..++
T Consensus 209 PY~~ 212 (230)
T PF03904_consen 209 PYIF 212 (230)
T ss_pred HHHH
Confidence 4443
No 11
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=68.56 E-value=45 Score=29.18 Aligned_cols=41 Identities=15% Similarity=0.303 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3790 64 ICWWIFTSLVHTIRTLRL-RHNLVKLTLYTHFMHTLTFAVLASVVFML 110 (253)
Q Consensus 64 f~~WIf~SL~~T~~~Lk~-rrQ~vKL~mYr~f~~~Li~aVv~Siifiv 110 (253)
++..||.-+..-+..... .++.. .+..+++.+++..+++..
T Consensus 88 ~~~~if~~~~gi~~~f~~~~~~~~------gi~tli~~~i~~G~~~~~ 129 (206)
T PF06570_consen 88 LFFGIFSLLFGIMGFFSPKNSNQY------GIITLILVSIVGGLVFYF 129 (206)
T ss_pred HHHHHHHHHHHHHHHHhhcccccc------cHHHHHHHHHHHHHHHHH
Confidence 344555555555543333 22222 455555555555544433
No 12
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=67.38 E-value=8 Score=28.33 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=18.1
Q ss_pred hhhHHHH-HHHHHHHHHHHHhccCCCcc
Q psy3790 131 DDAYWHL-LFSLILVVIMILWRPMNNSQ 157 (253)
Q Consensus 131 ~dafW~~-Lff~vl~~I~~LWRPT~nn~ 157 (253)
.++++-+ ++.+++++|.|..||....+
T Consensus 10 a~a~~t~~~~l~fiavi~~ayr~~~K~~ 37 (60)
T COG4736 10 ADAWGTIAFTLFFIAVIYFAYRPGKKGE 37 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 3455554 45557778899999976543
No 13
>CHL00043 cemA envelope membrane protein
Probab=60.00 E-value=26 Score=32.67 Aligned_cols=24 Identities=38% Similarity=0.873 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3790 50 MLLSSIPLALLDSTICWWIFTSLVH 74 (253)
Q Consensus 50 ~l~~~iPla~lds~f~~WIf~SL~~ 74 (253)
.+.+.+|| ++|++|=+|||+-|++
T Consensus 224 lfVatfPV-iLDtiFKYWIFRyLNR 247 (261)
T CHL00043 224 LLVSTFPV-ILDTIFKYWIFRYLNR 247 (261)
T ss_pred HHHHhhhH-HHHHHHHHHHHhhccC
Confidence 56888896 7999999999997765
No 14
>KOG2678|consensus
Probab=59.41 E-value=18 Score=33.23 Aligned_cols=35 Identities=26% Similarity=0.200 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3790 82 RHNLVKLTLYTHFMHTLTFAVLASVVFMLYSIKEH 116 (253)
Q Consensus 82 rrQ~vKL~mYr~f~~~Li~aVv~Siifiv~s~~~~ 116 (253)
-+++.|-+.|-.|.+++++.|++|+++|++-+..+
T Consensus 206 ve~y~ksk~s~wf~~~miI~v~~sFVsMiliiqif 240 (244)
T KOG2678|consen 206 VEKYDKSKLSYWFYITMIIFVILSFVSMILIIQIF 240 (244)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35577777799999999999999999988765543
No 15
>PF03040 CemA: CemA family; InterPro: IPR004282 Members of this family are probable integral membrane proteins. Their molecular function is unknown. CemA proteins are found in the inner envelope membrane of chloroplasts but not in the thylakoid membrane []. A cyanobacterial member of this family (proton extrusion protein PcxA) is involved in light-induced Na(+)-dependent proton extrusion and has been implicated in CO2 transport, but is probably not a CO2 transporter itself [].; GO: 0016021 integral to membrane
Probab=55.51 E-value=22 Score=32.45 Aligned_cols=24 Identities=29% Similarity=0.830 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3790 50 MLLSSIPLALLDSTICWWIFTSLVH 74 (253)
Q Consensus 50 ~l~~~iPla~lds~f~~WIf~SL~~ 74 (253)
.+.+.+|| ++|++|=+|||+-|++
T Consensus 193 ~fvatfPV-iLDt~fKyWIFryLnr 216 (230)
T PF03040_consen 193 LFVATFPV-ILDTIFKYWIFRYLNR 216 (230)
T ss_pred hhhhhhhH-HHHHHHHHhhhcccCC
Confidence 56888996 7999999999997764
No 16
>PRK02507 proton extrusion protein PcxA; Provisional
Probab=55.24 E-value=30 Score=34.40 Aligned_cols=24 Identities=29% Similarity=0.844 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3790 50 MLLSSIPLALLDSTICWWIFTSLVH 74 (253)
Q Consensus 50 ~l~~~iPla~lds~f~~WIf~SL~~ 74 (253)
.+++.+|| ++|++|=+|||+-|++
T Consensus 385 lFVaTfPV-iLDTiFKYWIFRyLNR 408 (422)
T PRK02507 385 LFIATFPV-ILDTIFKYWIFRYLNR 408 (422)
T ss_pred HHHhhhhH-HHHHHHHHHHHhhccC
Confidence 56888896 7999999999997764
No 17
>PF05620 DUF788: Protein of unknown function (DUF788); InterPro: IPR008506 This family consists of several eukaryotic proteins of unknown function.
Probab=51.30 E-value=1.3e+02 Score=25.72 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=33.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhccCCCccccccccCCCCCCCCCchH
Q psy3790 128 LWIDDAYWHLLFSLILVVIMILWRPMNNSQRYAFTPLLDPTLDEEDDE 175 (253)
Q Consensus 128 ~Wi~dafW~~Lff~vl~~I~~LWRPT~nn~ryA~s~~l~~~ede~d~~ 175 (253)
.|+-..++.+..++.+-.+..+=||+-+ +-.+++|..+|=++++
T Consensus 47 ~~~~~~~~~~~~~~~~~~l~~~~rp~~~----~~g~Lv~~G~DL~~~G 90 (170)
T PF05620_consen 47 SWFGYLLFSLPAIFCYYFLEKMARPKYD----ETGELVDAGEDLNQPG 90 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcC----CCCCeecCcccccCCc
Confidence 5777888888888888899999999877 4456778777654444
No 18
>PF04276 DUF443: Protein of unknown function (DUF443) ; InterPro: IPR005915 The members of this family share 50 % or greater sequence identity. They are found as eleven tandem genes, arranged head-to-tail, in Staphylococcus aureus (strain COL). Distant full-length homologs are found in a Staphylococcus haemolyticus plasmid and in Bacillus halodurans. The function of these proteins is unknown.
Probab=49.42 E-value=1.7e+02 Score=25.67 Aligned_cols=81 Identities=14% Similarity=0.195 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCcc--h-hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHH--HHHHHHHH
Q psy3790 24 VVVVGVLYFCLYLISLFIRIYDDRSN--M-LLSSIPLALLDSTICWWIFTSLVHTIRT-LRLRHNLVKLT--LYTHFMHT 97 (253)
Q Consensus 24 v~~lg~~yfv~~~i~~~~~~~~~~~~--~-l~~~iPla~lds~f~~WIf~SL~~T~~~-Lk~rrQ~vKL~--mYr~f~~~ 97 (253)
..+.|+..++......+....+-+.+ . .+.++-+.+.-.++..|+-....+-+.. .+..++.+++. -.+++...
T Consensus 63 ~~~~G~~vli~~llr~~~~~~~i~~~~~i~~~i~~i~~l~v~~l~~~l~kk~k~~i~~~~~~~~~ki~l~P~~~K~~~~~ 142 (199)
T PF04276_consen 63 WLGAGISVLISVLLRPYIDYFNIQSSRIINIIICIIVILGVLILRIYLNKKLKKKIYNRNKNSKQKIILIPETFKNFFKN 142 (199)
T ss_pred hHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceEEEEEEcchHHHHHH
Confidence 55666666777777777665544443 1 1122112222224566665555544544 34455555555 36666656
Q ss_pred HHHHHHH
Q psy3790 98 LTFAVLA 104 (253)
Q Consensus 98 Li~aVv~ 104 (253)
+.+++.+
T Consensus 143 lf~yi~~ 149 (199)
T PF04276_consen 143 LFAYIFF 149 (199)
T ss_pred HHHHHHH
Confidence 5555443
No 19
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=49.18 E-value=50 Score=29.19 Aligned_cols=24 Identities=25% Similarity=0.510 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHH--HHhccCCC
Q psy3790 132 DAYWHLLFSLILVVIM--ILWRPMNN 155 (253)
Q Consensus 132 dafW~~Lff~vl~~I~--~LWRPT~n 155 (253)
+-+|+++.|++|++++ |+|+|-.+
T Consensus 50 ~~i~qlInFlIlv~lL~k~l~kPi~~ 75 (205)
T PRK06231 50 VFIAHLIAFSILLLLGIFLFWKPTQR 75 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888888888886 78999644
No 20
>KOG3193|consensus
Probab=42.52 E-value=37 Score=35.36 Aligned_cols=88 Identities=25% Similarity=0.495 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhh-h-----hhhhhcccc------e----e
Q psy3790 65 CWWIFTSLVHTIRTLRLRHNLVKLTLYTHFMHTLTFAVLASVVFMLY-SIKE-H-----RLALCLTHW------K----E 127 (253)
Q Consensus 65 ~~WIf~SL~~T~~~Lk~rrQ~vKL~mYr~f~~~Li~aVv~Siifiv~-s~~~-~-----~~~~~~~~W------k----~ 127 (253)
||.-=.+|...|.+|..+-|.-.-.++|.+ +|++++++-.+|-.. ++-- . +++-..+.+ . -
T Consensus 158 cwlakgalqammndl~r~~~~s~sal~~ql--~ll~s~l~clift~~c~i~h~qra~~k~i~lf~s~y~v~vtfstvgyg 235 (1087)
T KOG3193|consen 158 CWLAKGALQAMMNDLNRKSFISSSALFRQL--LLLFSVLACLIFTGMCSIEHLQRARGKRIDLFTSFYFVMVTFSTVGYG 235 (1087)
T ss_pred hhhhhhHHHHhhhhHhHHhhhhHHHHHHHH--HHHHHHHHHHHHhhhhhHHHHHHccCceeeeeeeEEEEEEEEeecccc
Confidence 444567788888999998888889999998 577888887777543 2210 0 001001000 0 1
Q ss_pred hhhhhhHHH-HHHHHHHHHHHHHhccCCC
Q psy3790 128 LWIDDAYWH-LLFSLILVVIMILWRPMNN 155 (253)
Q Consensus 128 ~Wi~dafW~-~Lff~vl~~I~~LWRPT~n 155 (253)
.| ..++|+ -|+.++++.++..--|++-
T Consensus 236 d~-~pd~w~sql~~vi~icval~~ip~q~ 263 (1087)
T KOG3193|consen 236 DW-YPDYWASQLCVVILICVALGLIPKQL 263 (1087)
T ss_pred cc-ccccchhhHHHHHHHHHHHhccHHHH
Confidence 23 356676 4888888888877777653
No 21
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=42.07 E-value=22 Score=30.44 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=19.5
Q ss_pred hhhhHHHHHHHHHHHHH--HHHhccCCC
Q psy3790 130 IDDAYWHLLFSLILVVI--MILWRPMNN 155 (253)
Q Consensus 130 i~dafW~~Lff~vl~~I--~~LWRPT~n 155 (253)
++.-||.++.|++|++| -|.|+|=.+
T Consensus 4 ~~~~fwq~I~FlIll~ll~kfawkPI~~ 31 (154)
T PRK06568 4 LDESFWLAVSFVIFVYLIYRPAKKAILN 31 (154)
T ss_pred hHhHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 56789998888877777 466888543
No 22
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=41.96 E-value=1.1e+02 Score=28.97 Aligned_cols=62 Identities=19% Similarity=0.355 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhh
Q psy3790 51 LLSSIPLALLDSTI---CWWIFTSLVHTIRTLRLRHNLVKLTLYTHFMHTLTFAVLASVVF-MLYSIKEHRL 118 (253)
Q Consensus 51 l~~~iPla~lds~f---~~WIf~SL~~T~~~Lk~rrQ~vKL~mYr~f~~~Li~aVv~Siif-iv~s~~~~~~ 118 (253)
++..+|.++-|..+ +.|++..+-..+++++.++...+ +..++.+..++-++| +.|.+..+|.
T Consensus 17 ~~g~~PFSvgdi~~~~~il~ll~~~~~~~~~~~k~~~~~~------l~~~~~~~~~~y~~F~~~WGlNY~R~ 82 (318)
T PF12725_consen 17 LFGWFPFSVGDILYYLLILFLLYYLIRLIRKIFKKKKRFK------LLNILFFLSVLYFLFYLLWGLNYYRP 82 (318)
T ss_pred hccCcChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH------HHHHHHHHHHHHHHHHHHhhhhcCCc
Confidence 45566777766544 34455556666665544444443 334443333333334 4577766654
No 23
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=40.19 E-value=23 Score=29.74 Aligned_cols=25 Identities=24% Similarity=0.749 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHH--HHHhccCCC
Q psy3790 131 DDAYWHLLFSLILVVI--MILWRPMNN 155 (253)
Q Consensus 131 ~dafW~~Lff~vl~~I--~~LWRPT~n 155 (253)
.+-+|.++.|++|+++ -|+|+|-.+
T Consensus 9 ~~~~~~~i~Flil~~ll~~~l~~pi~~ 35 (164)
T PRK14471 9 GLFFWQTILFLILLLLLAKFAWKPILG 35 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5678888888877777 589999644
No 24
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=36.32 E-value=12 Score=29.05 Aligned_cols=11 Identities=45% Similarity=0.574 Sum_probs=0.0
Q ss_pred chHHHHHhhhh
Q psy3790 173 DDEEVEQFINQ 183 (253)
Q Consensus 173 d~~e~~~~~~~ 183 (253)
||||+++|...
T Consensus 46 Ddeeee~m~rK 56 (81)
T PF14812_consen 46 DDEEEEPMPRK 56 (81)
T ss_dssp -----------
T ss_pred chhhccccccc
Confidence 34566666554
No 25
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=36.07 E-value=3.4e+02 Score=24.85 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy3790 52 LSSIPLALLDSTICWWIFTSLVHTIRTLRLRHNLVKLTLYTHF 94 (253)
Q Consensus 52 ~~~iPla~lds~f~~WIf~SL~~T~~~Lk~rrQ~vKL~mYr~f 94 (253)
+..+|++++=+.+++-+=+.+..|++.-+..+...+.-+.|=+
T Consensus 46 ~~ai~~glvwgl~I~~lDR~ivss~~~~~~~~~~~~~~~~R~~ 88 (301)
T PF14362_consen 46 WAAIPFGLVWGLVIFNLDRFIVSSIRKSDGSRKRLLQALPRLL 88 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 6677777666666666656666666655553333344444433
No 26
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=35.12 E-value=30 Score=29.29 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHHHHHHH----HHhccC
Q psy3790 131 DDAYWHLLFSLILVVIM----ILWRPM 153 (253)
Q Consensus 131 ~dafW~~Lff~vl~~I~----~LWRPT 153 (253)
.+-||.++.|+++++|. |+|+|-
T Consensus 9 ~~~~w~~i~f~il~~iL~~~k~l~~pi 35 (167)
T PRK14475 9 NPEFWVGAGLLIFFGILIALKVLPKAL 35 (167)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 56689888888777654 467884
No 27
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=34.54 E-value=3.1e+02 Score=23.86 Aligned_cols=44 Identities=11% Similarity=0.282 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhccCc-c--hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3790 32 FCLYLISLFIRIYDDRS-N--MLLSSIPLALLDSTICWWIFTSLVHT 75 (253)
Q Consensus 32 fv~~~i~~~~~~~~~~~-~--~l~~~iPla~lds~f~~WIf~SL~~T 75 (253)
-+++++.++...-++.+ . -+..++.+++.-.+++.+++.-+.++
T Consensus 91 ~if~~~~gi~~~f~~~~~~~~gi~tli~~~i~~G~~~~~~~~~i~~~ 137 (206)
T PF06570_consen 91 GIFSLLFGIMGFFSPKNSNQYGIITLILVSIVGGLVFYFIFKYIYPY 137 (206)
T ss_pred HHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455556554322211 1 34455556655555555555444433
No 28
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=34.10 E-value=1.1e+02 Score=23.28 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3790 82 RHNLVKLTLYTHFMHTLTFAVLASVVFMLYSIK 114 (253)
Q Consensus 82 rrQ~vKL~mYr~f~~~Li~aVv~Siifiv~s~~ 114 (253)
+.+..++..++++..+++++++++.+..+|..+
T Consensus 3 ~~~~~~~~~~~~l~i~l~~~v~~~a~~~v~~~~ 35 (97)
T PF04999_consen 3 KIIIRDIKRQKKLIILLVIVVLISALGVVYSRH 35 (97)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888787777666666543
No 29
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=33.97 E-value=94 Score=28.02 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy3790 93 HFMHTLTFAVLASVVFMLYSI 113 (253)
Q Consensus 93 ~f~~~Li~aVv~Siifiv~s~ 113 (253)
.|++++++.|++.|++++.-+
T Consensus 228 ~~~~~~i~~v~~~Fi~mvl~i 248 (251)
T PF09753_consen 228 CWTWLMIFVVIIVFIMMVLFI 248 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 566666666666666555443
No 30
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=33.38 E-value=33 Score=29.20 Aligned_cols=25 Identities=20% Similarity=0.505 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHHHHHH--HHHhccCCC
Q psy3790 131 DDAYWHLLFSLILVVI--MILWRPMNN 155 (253)
Q Consensus 131 ~dafW~~Lff~vl~~I--~~LWRPT~n 155 (253)
.+-+|.++.|++|+++ -|+|+|-.+
T Consensus 17 ~~~~~~~i~Flil~~iL~~~~~kpi~~ 43 (173)
T PRK13460 17 GLVVWTLVTFLVVVLVLKKFAWDVILK 43 (173)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3678888888877776 488999544
No 31
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=33.23 E-value=5.1e+02 Score=25.93 Aligned_cols=49 Identities=16% Similarity=0.306 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccC------c-c-------hhHHHHHHHHHHHHHHHHH
Q psy3790 20 MLHRVVVVGVLYFCLYLISLFIRIYDDR------S-N-------MLLSSIPLALLDSTICWWI 68 (253)
Q Consensus 20 ~~~rv~~lg~~yfv~~~i~~~~~~~~~~------~-~-------~l~~~iPla~lds~f~~WI 68 (253)
..+|+..+++.+|.....+.++|...+. + + ..+.++|.+++-+.+|-|.
T Consensus 5 E~~k~~~~~l~fF~il~~Y~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l 67 (472)
T TIGR00769 5 ELKKFLPLFLMFFCILFNYTILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKL 67 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888888754332 1 1 2467788877766666655
No 32
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=32.86 E-value=56 Score=25.06 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3790 52 LSSIPLALLDSTICWWIFTSLVHT 75 (253)
Q Consensus 52 ~~~iPla~lds~f~~WIf~SL~~T 75 (253)
..++|++++-.+||++++..-.+-
T Consensus 4 ~~l~~~vv~~~i~yf~~~rpqkK~ 27 (84)
T TIGR00739 4 TTLLPLVLIFLIFYFLIIRPQRKR 27 (84)
T ss_pred HHHHHHHHHHHHHHHheechHHHH
Confidence 456788888888888887654333
No 33
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=32.58 E-value=58 Score=29.20 Aligned_cols=20 Identities=5% Similarity=0.119 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy3790 83 HNLVKLTLYTHFMHTLTFAV 102 (253)
Q Consensus 83 rQ~vKL~mYr~f~~~Li~aV 102 (253)
++....+..|++..++++.+
T Consensus 178 ~~~~~~kv~ksL~v~v~i~i 197 (257)
T PF10320_consen 178 NSSRSKKVFKSLKVTVIIFI 197 (257)
T ss_pred cchhHHHHHHHhhhheeeee
Confidence 34555677777766555443
No 34
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=32.47 E-value=36 Score=28.00 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHH--HHhccCCC
Q psy3790 132 DAYWHLLFSLILVVIM--ILWRPMNN 155 (253)
Q Consensus 132 dafW~~Lff~vl~~I~--~LWRPT~n 155 (253)
+-+|.++.|++|++|. |+|+|-.+
T Consensus 6 ~~~~~~i~Flil~~il~~~~~~pi~~ 31 (156)
T PRK05759 6 TLIGQLIAFLILVWFIMKFVWPPIMK 31 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4578888888777774 77899654
No 35
>PLN00151 potassium transporter; Provisional
Probab=32.43 E-value=75 Score=34.30 Aligned_cols=21 Identities=29% Similarity=0.795 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhc
Q psy3790 131 DDAYWHLLFSLILVVIMILWR 151 (253)
Q Consensus 131 ~dafW~~Lff~vl~~I~~LWR 151 (253)
.-||.++++-+++.+||+.|+
T Consensus 553 ~GGW~Pl~la~v~~~iM~~W~ 573 (852)
T PLN00151 553 DGGWIPLVFASVFLCIMYIWN 573 (852)
T ss_pred CCCcHHHHHHHHHHHHHHHHH
Confidence 567779999999999999996
No 36
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=32.09 E-value=77 Score=24.04 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3790 52 LSSIPLALLDSTICWWIFTSLV 73 (253)
Q Consensus 52 ~~~iPla~lds~f~~WIf~SL~ 73 (253)
..++|+.++-.+||+|.+..-.
T Consensus 3 ~~li~lv~~~~i~yf~~~rpqk 24 (82)
T PF02699_consen 3 SMLIPLVIIFVIFYFLMIRPQK 24 (82)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHhhheecHHH
Confidence 4567888888888888766443
No 37
>PRK03557 zinc transporter ZitB; Provisional
Probab=31.98 E-value=4.2e+02 Score=24.58 Aligned_cols=14 Identities=21% Similarity=0.131 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q psy3790 89 TLYTHFMHTLTFAV 102 (253)
Q Consensus 89 ~mYr~f~~~Li~aV 102 (253)
.-+.|..+=.+.++
T Consensus 155 a~~~h~~~D~l~s~ 168 (312)
T PRK03557 155 AAALHVLGDLLGSV 168 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566655444443
No 38
>PRK12768 CysZ-like protein; Reviewed
Probab=31.77 E-value=2.3e+02 Score=25.83 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=29.1
Q ss_pred cceehhhhhhHHHHHHHHHHHHHHHHhccCCCccccccccCC
Q psy3790 124 HWKELWIDDAYWHLLFSLILVVIMILWRPMNNSQRYAFTPLL 165 (253)
Q Consensus 124 ~Wk~~Wi~dafW~~Lff~vl~~I~~LWRPT~nn~ryA~s~~l 165 (253)
+| -.|+.+..|.+.-..+++...|+..|-.|---=-+.+.+
T Consensus 60 ~w-l~wL~~ll~~l~~l~~l~~~~flf~~va~~IaapF~~~l 100 (240)
T PRK12768 60 DW-AGWLGWVLSIAAGLGLALGLALLIAPVTALIAGFFLDDV 100 (240)
T ss_pred cH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44 457888889988888899999999987764433333333
No 39
>KOG4016|consensus
Probab=31.69 E-value=1e+02 Score=28.23 Aligned_cols=15 Identities=27% Similarity=0.447 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhhh
Q psy3790 101 AVLASVVFMLYSIKE 115 (253)
Q Consensus 101 aVv~Siifiv~s~~~ 115 (253)
++++++.|++...+.
T Consensus 78 Afla~~~flvlD~~f 92 (233)
T KOG4016|consen 78 AFLACLAFLVLDVYF 92 (233)
T ss_pred HHHHHHHHHHHHhhh
Confidence 444455555544443
No 40
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=31.55 E-value=37 Score=28.99 Aligned_cols=23 Identities=17% Similarity=0.504 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHH--HHHhccCC
Q psy3790 132 DAYWHLLFSLILVVI--MILWRPMN 154 (253)
Q Consensus 132 dafW~~Lff~vl~~I--~~LWRPT~ 154 (253)
+-+|.++.|++|+++ -|+|+|-.
T Consensus 20 t~~~~iInFliL~~lL~~~l~~pi~ 44 (173)
T PRK13453 20 TVIVTVLTFIVLLALLKKFAWGPLK 44 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888777777766 57899954
No 41
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=31.49 E-value=37 Score=28.91 Aligned_cols=25 Identities=24% Similarity=0.636 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHHH--HHHhccCCC
Q psy3790 131 DDAYWHLLFSLILVVI--MILWRPMNN 155 (253)
Q Consensus 131 ~dafW~~Lff~vl~~I--~~LWRPT~n 155 (253)
..-||.++.|++|+++ -|+|+|-.+
T Consensus 19 ~~~~~~~i~Flil~~lL~~~l~kpi~~ 45 (175)
T PRK14472 19 GLIFWTAVTFVIVLLILKKIAWGPILS 45 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3457888777777666 589999644
No 42
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=31.34 E-value=3.9e+02 Score=27.58 Aligned_cols=21 Identities=19% Similarity=-0.075 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3790 58 ALLDSTICWWIFTSLVHTIRT 78 (253)
Q Consensus 58 a~lds~f~~WIf~SL~~T~~~ 78 (253)
..-.+.|+.|+..++++-.=+
T Consensus 406 isg~s~~i~W~~I~~shirFR 426 (541)
T COG0833 406 ISGLSGFIAWGSICLSHIRFR 426 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346678999999888876543
No 43
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=31.31 E-value=1.4e+02 Score=22.76 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCcc-hhHHHHHHHHHHHHHHHHHH
Q psy3790 19 AMLHRVVVVGVLYFCLYLISLFIRIYDDRSN-MLLSSIPLALLDSTICWWIF 69 (253)
Q Consensus 19 ~~~~rv~~lg~~yfv~~~i~~~~~~~~~~~~-~l~~~iPla~lds~f~~WIf 69 (253)
|.....++++++||+.=..-+++-..++.++ ..++-+|+=+..||+..|++
T Consensus 5 rEA~~tl~l~l~yf~~W~~~ay~~~~~~~~~y~~i~GlPlWF~~SCi~~~il 56 (80)
T PF06196_consen 5 REARWTLGLTLIYFAWWYGFAYGLGNGDGEEYKYIFGLPLWFFYSCIGGPIL 56 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccccCCcHHHHHHHHHHHHH
Confidence 4455677888899988877777544443333 56777788777787777764
No 44
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=31.17 E-value=63 Score=22.90 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy3790 51 LLSSIPLALLDSTICWWIF 69 (253)
Q Consensus 51 l~~~iPla~lds~f~~WIf 69 (253)
++..||++++..++.+|.|
T Consensus 4 l~~LIpiSl~l~~~~l~~f 22 (51)
T TIGR00847 4 LTILIPISLLLGGVGLVAF 22 (51)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5677777777776655543
No 45
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=31.13 E-value=40 Score=27.91 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHH--HHHhccCCC
Q psy3790 133 AYWHLLFSLILVVI--MILWRPMNN 155 (253)
Q Consensus 133 afW~~Lff~vl~~I--~~LWRPT~n 155 (253)
-+|.++.|++|+++ -|+|+|-.+
T Consensus 10 ~~~qli~Flil~~~l~kfl~kPi~~ 34 (141)
T PRK08476 10 MLATFVVFLLLIVILNSWLYKPLLK 34 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56887777777766 689999643
No 46
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=30.16 E-value=17 Score=34.73 Aligned_cols=19 Identities=42% Similarity=0.784 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q psy3790 131 DDAYWHLLFSLILVVIMIL 149 (253)
Q Consensus 131 ~dafW~~Lff~vl~~I~~L 149 (253)
.|-+|-+||..+++-+-+-
T Consensus 168 ~dL~WL~LFlaiLIWlY~H 186 (381)
T PF05297_consen 168 VDLYWLLLFLAILIWLYVH 186 (381)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5889999999888766543
No 47
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=30.15 E-value=4.8e+02 Score=26.24 Aligned_cols=52 Identities=13% Similarity=0.277 Sum_probs=39.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccCc-----c-------hhHHHHHHHHHHHHHHHHHH
Q psy3790 18 GAMLHRVVVVGVLYFCLYLISLFIRIYDDRS-----N-------MLLSSIPLALLDSTICWWIF 69 (253)
Q Consensus 18 g~~~~rv~~lg~~yfv~~~i~~~~~~~~~~~-----~-------~l~~~iPla~lds~f~~WIf 69 (253)
....+|...+++.+|.....++++|...+.- + .++.++|.+++-+++|-+..
T Consensus 20 ~~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~ 83 (491)
T PF03219_consen 20 RSELKKFLPLALMFFFILFNYTILRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLS 83 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999999998765421 1 34889999887777666543
No 48
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=29.29 E-value=44 Score=27.88 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHH--HHHhccCC
Q psy3790 132 DAYWHLLFSLILVVI--MILWRPMN 154 (253)
Q Consensus 132 dafW~~Lff~vl~~I--~~LWRPT~ 154 (253)
+-+|.++.|++|+++ -|+|+|-.
T Consensus 7 ~~~~~~inF~il~~iL~~f~~kpi~ 31 (159)
T PRK13461 7 TIIATIINFIILLLILKHFFFDKIK 31 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 567888888877776 57899953
No 49
>PF15546 DUF4653: Domain of unknown function (DUF4653)
Probab=29.02 E-value=82 Score=28.63 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHH---------hhHHHHHHHHHHHH
Q psy3790 70 TSLVHTIRTLRL---------RHNLVKLTLYTHFM 95 (253)
Q Consensus 70 ~SL~~T~~~Lk~---------rrQ~vKL~mYr~f~ 95 (253)
-++++..+.|++ .|-+|-|-|||||.
T Consensus 156 psva~Avq~Lq~~Er~KeqEkEKHhv~LvMYRRLA 190 (239)
T PF15546_consen 156 PSVAEAVQQLQAQERYKEQEKEKHHVHLVMYRRLA 190 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 345555555553 35578899999994
No 50
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=28.95 E-value=49 Score=28.56 Aligned_cols=25 Identities=8% Similarity=0.367 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHHHHH--HHHhccCCC
Q psy3790 131 DDAYWHLLFSLILVVI--MILWRPMNN 155 (253)
Q Consensus 131 ~dafW~~Lff~vl~~I--~~LWRPT~n 155 (253)
..-||.++.|++|+++ -|+|+|-.+
T Consensus 32 ~q~~~~lI~F~iL~~ll~k~l~~PI~~ 58 (181)
T PRK13454 32 NQIFWLLVTLVAIYFVLTRVALPRIGA 58 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778887777766665 477999654
No 51
>PRK15071 lipopolysaccharide ABC transporter permease; Provisional
Probab=28.70 E-value=3.9e+02 Score=24.82 Aligned_cols=56 Identities=11% Similarity=0.074 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3790 51 LLSSIPLALLDSTICWWIFTSLVHTIR--TLRLRHNLVKLTLYTHFMHTLTFAVLASVVFMLYS 112 (253)
Q Consensus 51 l~~~iPla~lds~f~~WIf~SL~~T~~--~Lk~rrQ~vKL~mYr~f~~~Li~aVv~Siifiv~s 112 (253)
+..++|++++-++++.. ..|++.-+ -++. .=.+.+|-..-+++++++++++-++.+
T Consensus 62 l~~~lP~a~lla~l~~l--~~L~~~sEl~a~ra----~GiS~~ri~~p~l~~a~~~~~l~~~~~ 119 (356)
T PRK15071 62 IEIFFPMAALLGALIGL--GMLASRSELVVMQA----SGFSRLQIALSVMKTAIPLVLLTMAIG 119 (356)
T ss_pred HHHHHHHHHHHHHHHHH--HHHhhcCchhhHhH----cCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677777776665432 22222211 1221 225677777778888887776554443
No 52
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=28.39 E-value=92 Score=24.98 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy3790 50 MLLSSIPLALLDSTICWWIFTSL 72 (253)
Q Consensus 50 ~l~~~iPla~lds~f~~WIf~SL 72 (253)
.+..++|+.++-.+||+++++.-
T Consensus 17 ~~~~ll~lvii~~i~yf~~~Rpq 39 (106)
T PRK05585 17 GLSSLLPLVVFFAIFYFLIIRPQ 39 (106)
T ss_pred cHHHHHHHHHHHHHHHHHhccHH
Confidence 45666788888888888776543
No 53
>PLN00150 potassium ion transporter family protein; Provisional
Probab=27.77 E-value=1e+02 Score=33.04 Aligned_cols=21 Identities=14% Similarity=0.487 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhc
Q psy3790 131 DDAYWHLLFSLILVVIMILWR 151 (253)
Q Consensus 131 ~dafW~~Lff~vl~~I~~LWR 151 (253)
.-||++++.-+++..||+.||
T Consensus 493 ~GGW~pl~ia~v~~~iM~~W~ 513 (779)
T PLN00150 493 QGGWVPLVIAAVFGTVMYTWH 513 (779)
T ss_pred cCCcHHHHHHHHHHHHHHHHH
Confidence 567889999999999999997
No 54
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=27.75 E-value=5.3e+02 Score=24.45 Aligned_cols=25 Identities=8% Similarity=-0.077 Sum_probs=10.8
Q ss_pred HHHHHHHHH---HhhHHHHHHHHHHHHH
Q psy3790 72 LVHTIRTLR---LRHNLVKLTLYTHFMH 96 (253)
Q Consensus 72 L~~T~~~Lk---~rrQ~vKL~mYr~f~~ 96 (253)
|.++++.+. ++++..|-++.+.+.+
T Consensus 139 L~~~l~~la~~~~~~~~~~~~i~~al~Y 166 (399)
T PRK10573 139 LDECCFQLARQQEAQQQLTKKVKKALRY 166 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433 2333444444444443
No 55
>PF15473 PCNP: PEST, proteolytic signal-containing nuclear protein family
Probab=27.72 E-value=25 Score=30.23 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=14.8
Q ss_pred HHHHHhhhhhccccccCCCCCC-CCCCCCC
Q psy3790 175 EEVEQFINQNMVGMKMRPPPED-STSPKPR 203 (253)
Q Consensus 175 ~e~~~~~~~~~~g~k~r~~~~~-~~~~~~~ 203 (253)
+|.|.|..++- |.||+.-.+ .+|++||
T Consensus 102 ~e~eEmP~eak--mRMrNiGrdtptsagpn 129 (150)
T PF15473_consen 102 SEPEEMPPEAK--MRMRNIGRDTPTSAGPN 129 (150)
T ss_pred cChhhCCHHHH--HHHHhcCCCCCCCCCCC
Confidence 33444566654 888886533 2355554
No 56
>PF14514 TetR_C_9: Transcriptional regulator, TetR, C-terminal; PDB: 2QTQ_D 2RHA_A.
Probab=27.42 E-value=1e+02 Score=25.26 Aligned_cols=25 Identities=24% Similarity=0.657 Sum_probs=16.6
Q ss_pred cccccccchhHHHHHHHHHHHHHHHH
Q psy3790 11 GIVKPRLGAMLHRVVVVGVLYFCLYL 36 (253)
Q Consensus 11 GVVkP~Lg~~~~rv~~lg~~yfv~~~ 36 (253)
|+.|| .++..-.+.++|+|++.|+.
T Consensus 67 G~fR~-vDP~~~y~si~gl~~~~fs~ 91 (129)
T PF14514_consen 67 GVFRP-VDPRLFYISIIGLCYFYFSN 91 (129)
T ss_dssp TSB-S---HHHHHHHHHHHHHHHHHH
T ss_pred CCCcC-CCHHHHHHHHHHHHHHHHhh
Confidence 67777 77777788888888777763
No 57
>KOG4783|consensus
Probab=27.39 E-value=90 Score=25.15 Aligned_cols=48 Identities=8% Similarity=0.230 Sum_probs=30.7
Q ss_pred HHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3790 36 LISLFIRIYDDRSNMLLSSIPLALLDSTICWWIFTSLVHTIRTLRLRH 83 (253)
Q Consensus 36 ~i~~~~~~~~~~~~~l~~~iPla~lds~f~~WIf~SL~~T~~~Lk~rr 83 (253)
+.++++.++....++.-.++-+...-.+.-.||+.+..+--++-|+.|
T Consensus 53 vleg~lgis~~da~iySaI~aVVavHvalglyiy~A~~~~sr~~ke~K 100 (102)
T KOG4783|consen 53 VLEGYLGISEVDADIYSAICAVVAVHVALGLYIYRAIYAKSRTAKEAK 100 (102)
T ss_pred HHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccc
Confidence 456776666544445555555666778889999998776444444443
No 58
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=26.85 E-value=87 Score=32.06 Aligned_cols=24 Identities=29% Similarity=0.582 Sum_probs=20.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHhccC
Q psy3790 130 IDDAYWHLLFSLILVVIMILWRPM 153 (253)
Q Consensus 130 i~dafW~~Lff~vl~~I~~LWRPT 153 (253)
..-||++++.-+++..+|+.||=-
T Consensus 409 ~~GGW~pl~ia~~l~~iM~tW~~G 432 (534)
T PF02705_consen 409 PHGGWFPLLIAAVLFTIMYTWRRG 432 (534)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHH
Confidence 367788999999999999999853
No 59
>PLN03223 Polycystin cation channel protein; Provisional
Probab=26.59 E-value=1.7e+02 Score=33.66 Aligned_cols=44 Identities=9% Similarity=-0.003 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-H-HHHHHHHHHHHHHHHHH
Q psy3790 58 ALLDSTICWWIFTSLVHTIRTLRLRH-N-LVKLTLYTHFMHTLTFA 101 (253)
Q Consensus 58 a~lds~f~~WIf~SL~~T~~~Lk~rr-Q-~vKL~mYr~f~~~Li~a 101 (253)
.++..+|+++|+.++-+-++.++..| + .-++.=|+.|+|+|=+.
T Consensus 1176 LacEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl 1221 (1634)
T PLN03223 1176 FAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFA 1221 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHH
Confidence 46788899999999988888876543 2 33467799999987544
No 60
>PRK15120 lipopolysaccharide ABC transporter permease LptF; Provisional
Probab=26.53 E-value=5.4e+02 Score=24.10 Aligned_cols=54 Identities=11% Similarity=0.146 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3790 51 LLSSIPLALLDSTICWWIFTSLVHTIRTLRLRHNLVK-----LTLYTHFMHTLTFAVLASVVFMLYSI 113 (253)
Q Consensus 51 l~~~iPla~lds~f~~WIf~SL~~T~~~Lk~rrQ~vK-----L~mYr~f~~~Li~aVv~Siifiv~s~ 113 (253)
+..++|+|++.++++.. . .|......+= .+.+|=..-+++++++++++.++.+.
T Consensus 60 l~~~lP~a~lla~ll~l--g-------rL~~~sEl~alrA~GiS~~ri~~p~l~~al~~~~~~~~~~~ 118 (366)
T PRK15120 60 AQLILPLSLFLGLLMTL--G-------KLYTESEITVMHACGLSKAVLVKAAMILALFTAILAAVNVM 118 (366)
T ss_pred HHHHHHHHHHHHHHHHH--H-------hhccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777776664432 2 3333222222 34555566667777776665444443
No 61
>PF14184 YrvL: Regulatory protein YrvL
Probab=26.04 E-value=3.5e+02 Score=22.46 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=29.6
Q ss_pred HHHHHHHHhhccCc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy3790 35 YLISLFIRIYDDRS---NMLLSSIPLALLDSTICWWIFTSLVHTIRTLRLRHNL 85 (253)
Q Consensus 35 ~~i~~~~~~~~~~~---~~l~~~iPla~lds~f~~WIf~SL~~T~~~Lk~rrQ~ 85 (253)
...-++.+..|-.- +-+++.+-+..+.+.+.--+...+.+.++++|.-|+.
T Consensus 23 f~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~ 76 (132)
T PF14184_consen 23 FVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRL 76 (132)
T ss_pred HHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHH
Confidence 33445555555322 2344444445555666777888888888888554443
No 62
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=25.20 E-value=3.8e+02 Score=26.43 Aligned_cols=26 Identities=23% Similarity=0.531 Sum_probs=14.8
Q ss_pred hhHHH-HHHHHHHHHHHHHhccCCCcc
Q psy3790 132 DAYWH-LLFSLILVVIMILWRPMNNSQ 157 (253)
Q Consensus 132 dafW~-~Lff~vl~~I~~LWRPT~nn~ 157 (253)
..||- ....++++.+.+++||..+++
T Consensus 168 ~~fwi~s~~~~il~lll~~~~~~~~~~ 194 (412)
T PF01306_consen 168 IIFWIASAAAIILLLLLLLLKPDVPPQ 194 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHSS---SSSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcCchh
Confidence 34563 345567778888899976654
No 63
>PLN00148 potassium transporter; Provisional
Probab=25.18 E-value=1.3e+02 Score=32.33 Aligned_cols=21 Identities=29% Similarity=0.675 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhc
Q psy3790 131 DDAYWHLLFSLILVVIMILWR 151 (253)
Q Consensus 131 ~dafW~~Lff~vl~~I~~LWR 151 (253)
.-||++++.-+++..||+.||
T Consensus 476 ~GGW~pl~ia~v~~~iM~~W~ 496 (785)
T PLN00148 476 QGGWVPLVLSAIFMSIMYIWH 496 (785)
T ss_pred CCChHHHHHHHHHHHHHHHHH
Confidence 567789999999999999996
No 64
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=24.94 E-value=84 Score=22.18 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=10.9
Q ss_pred CCccccccccCCCCCC
Q psy3790 154 NNSQRYAFTPLLDPTL 169 (253)
Q Consensus 154 ~nn~ryA~s~~l~~~e 169 (253)
..++.|+|---.|..|
T Consensus 22 ~~~K~ygYkht~d~~e 37 (50)
T PF12606_consen 22 TTLKAYGYKHTVDPLE 37 (50)
T ss_pred HHhhccccccccCCCC
Confidence 5678888876666534
No 65
>PRK11281 hypothetical protein; Provisional
Probab=24.66 E-value=7.4e+02 Score=27.86 Aligned_cols=16 Identities=0% Similarity=0.141 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3790 26 VVGVLYFCLYLISLFI 41 (253)
Q Consensus 26 ~lg~~yfv~~~i~~~~ 41 (253)
.++++++++..+..+.
T Consensus 584 ~~~~~w~~~~~~~~~~ 599 (1113)
T PRK11281 584 KLALFWLVFATCYRVL 599 (1113)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344555665555443
No 66
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=24.54 E-value=6.1e+02 Score=24.01 Aligned_cols=74 Identities=12% Similarity=0.055 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccceehhhhhhHHHHHHHHHHHHHHHHhccCCCccccccc
Q psy3790 83 HNLVKLTLYTHFMHTLTFAVLASVVFMLYSIKEHRLALCLTHWKELWIDDAYWHLLFSLILVVIMILWRPMNNSQRYAFT 162 (253)
Q Consensus 83 rQ~vKL~mYr~f~~~Li~aVv~Siifiv~s~~~~~~~~~~~~Wk~~Wi~dafW~~Lff~vl~~I~~LWRPT~nn~ryA~s 162 (253)
+..-+.+..|++.+.++..+-...+.+...-|.++-.....++...-+.-..|-++|..+.=.+.. ..+|+||-
T Consensus 188 ~~~~~~~~~~~l~~~~li~~Pl~li~la~~GY~yTA~~L~~~l~~sl~l~~~~~l~~~l~~Rwl~v------~~RRLA~~ 261 (340)
T PF12794_consen 188 KPDSWIHRLRYLWWPLLILAPLALIVLALLGYYYTALQLLERLILSLYLLLGWLLVYQLILRWLLV------ARRRLAYE 261 (340)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 455566788888876666553333333322222221112222222222334444555555555544 34577774
No 67
>PLN00149 potassium transporter; Provisional
Probab=24.52 E-value=1.3e+02 Score=32.39 Aligned_cols=21 Identities=24% Similarity=0.735 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhc
Q psy3790 131 DDAYWHLLFSLILVVIMILWR 151 (253)
Q Consensus 131 ~dafW~~Lff~vl~~I~~LWR 151 (253)
.-||++++.-+++..||+.||
T Consensus 480 ~GGW~pl~ia~v~~~iM~~W~ 500 (779)
T PLN00149 480 EGAWVPIALSFIFLLVMYVWH 500 (779)
T ss_pred CCCcHHHHHHHHHHHHHHHHH
Confidence 567789999999999999996
No 68
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=24.51 E-value=1.2e+02 Score=24.58 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy3790 51 LLSSIPLALLDSTICWWIF 69 (253)
Q Consensus 51 l~~~iPla~lds~f~~WIf 69 (253)
+..++|+.++-++||++++
T Consensus 4 ~~~ll~lv~i~~i~yF~~i 22 (109)
T PRK05886 4 LVLFLPFLLIMGGFMYFAS 22 (109)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3456777777777777664
No 69
>PF13239 2TM: 2TM domain
Probab=24.21 E-value=3e+02 Score=20.41 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy3790 82 RHNLVKLTLYTHFMHTLT 99 (253)
Q Consensus 82 rrQ~vKL~mYr~f~~~Li 99 (253)
||..-+-..|+|+..-++
T Consensus 7 ~~v~~~k~fy~Hl~~y~i 24 (83)
T PF13239_consen 7 KRVKRRKGFYRHLAVYLI 24 (83)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444556778888864443
No 70
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=23.65 E-value=65 Score=26.93 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHH--HHHhccC
Q psy3790 132 DAYWHLLFSLILVVI--MILWRPM 153 (253)
Q Consensus 132 dafW~~Lff~vl~~I--~~LWRPT 153 (253)
+-+|.++.|++|+++ -|+|+|-
T Consensus 24 t~~~~~inFliL~~lL~k~l~~Pi 47 (156)
T CHL00118 24 TLPLMALQFLLLMVLLNIILYKPL 47 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777777777666 5899994
No 71
>KOG1292|consensus
Probab=23.60 E-value=4.1e+02 Score=27.18 Aligned_cols=108 Identities=22% Similarity=0.289 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3790 21 LHRVVVVGVLYFCLY-LISLFIRIYDDRSNMLLSSIPLALLDSTICWWIFTSLVHTIRTLRLRHNLVKLTLYTHFMHTLT 99 (253)
Q Consensus 21 ~~rv~~lg~~yfv~~-~i~~~~~~~~~~~~~l~~~iPla~lds~f~~WIf~SL~~T~~~Lk~rrQ~vKL~mYr~f~~~Li 99 (253)
-+|+++.++.+.++. ++--.. .++..||..+.-+.+|.-.=.=-+--+.+| |.+-++.+|+++ ++.
T Consensus 347 SRrvvQ~aa~fmI~~~i~gKFg--------A~fAsIP~piv~~l~c~~~~mv~avgLSnL----Qf~dlns~RNl~-IlG 413 (510)
T KOG1292|consen 347 SRRVVQIAAGFMIFFGIFGKFG--------AFFASIPDPIVGGLLCILFGMVGAVGLSNL----QFVDLNSSRNLF-ILG 413 (510)
T ss_pred eeeehhhhHHHHHHHHHHHHHH--------HHHHcCcHHHHHHHHHHHHHHHHHHhhhhh----eeeccccccchh-hhh
Confidence 357888888885554 332221 467888888877776554311111112233 568888888886 444
Q ss_pred HHHHHHHHHHHHHhhhh-hhhhhcccceehhhhhhHHHHHHHHHHHHH
Q psy3790 100 FAVLASVVFMLYSIKEH-RLALCLTHWKELWIDDAYWHLLFSLILVVI 146 (253)
Q Consensus 100 ~aVv~Siifiv~s~~~~-~~~~~~~~Wk~~Wi~dafW~~Lff~vl~~I 146 (253)
+|+. +..++-.+ +....+-+=...|+++-.--++..-.+++-
T Consensus 414 ~Sif-----~gLsip~yF~~~~~~v~Tg~~~~d~ilnvll~~~m~Vgg 456 (510)
T KOG1292|consen 414 FSIF-----LGLSIPQYFEQYPGPVHTGNGWFDDILNVLLSSRMLVGG 456 (510)
T ss_pred HHHH-----HhccHHHHHHhCCCccccCcHHHHHHHHHHhhHHHHHHH
Confidence 4443 33333211 111101121345887766655555444443
No 72
>PF06612 DUF1146: Protein of unknown function (DUF1146); InterPro: IPR009526 Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes YwzB from Bacillus subtilis.
Probab=23.57 E-value=1.8e+02 Score=20.14 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3790 63 TICWWIFTSLVHTIRTLRLRHNLVKLTLYTHFMHTLTFAVLASV 106 (253)
Q Consensus 63 ~f~~WIf~SL~~T~~~Lk~rrQ~vKL~mYr~f~~~Li~aVv~Si 106 (253)
++-||.+.++ -.+++=.+.+..|.++..-|.-+-+++.++++
T Consensus 5 ~la~~aLq~l--~~ekf~k~~~~~q~~ll~vllsIalGylvs~F 46 (48)
T PF06612_consen 5 ALAFWALQSL--RWEKFFKKPNVRQARLLIVLLSIALGYLVSSF 46 (48)
T ss_pred HHHHHHHHhc--CHHHHhCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence 4457777777 34444444578888888888777777777765
No 73
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=23.55 E-value=1.3e+02 Score=31.81 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhccC
Q psy3790 131 DDAYWHLLFSLILVVIMILWRPM 153 (253)
Q Consensus 131 ~dafW~~Lff~vl~~I~~LWRPT 153 (253)
.-||++++.-+++..+|+.||=-
T Consensus 447 ~GGW~pl~ia~i~~~iM~~W~~G 469 (688)
T TIGR00794 447 EGGWFPLSLSGIFMSVMTTWRYG 469 (688)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999853
No 74
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=23.44 E-value=2.7e+02 Score=19.51 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=17.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q psy3790 129 WIDDAYWHLLFSLILVVIMIL 149 (253)
Q Consensus 129 Wi~dafW~~Lff~vl~~I~~L 149 (253)
|+.-+||..++.++++++.+.
T Consensus 24 ~l~~GF~~tl~i~~~~~iG~~ 44 (51)
T PF10031_consen 24 ILTFGFWKTLFILLFAAIGYY 44 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999888764
No 75
>COG1766 fliF Flagellar basal body M-ring protein [Cell motility and secretion]
Probab=23.35 E-value=36 Score=34.79 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=33.4
Q ss_pred cccceehhhhhhHHH-HHHHHHHHHHHHHhccCCCccccccccC
Q psy3790 122 LTHWKELWIDDAYWH-LLFSLILVVIMILWRPMNNSQRYAFTPL 164 (253)
Q Consensus 122 ~~~Wk~~Wi~dafW~-~Lff~vl~~I~~LWRPT~nn~ryA~s~~ 164 (253)
...|+..++.+.++. ..++++|+++.++|||-....+--..++
T Consensus 433 ~~~~~~~~~~~~~~~~~~~l~~~lv~~~~~r~~i~~~~~~~~e~ 476 (545)
T COG1766 433 KPEWETQSFLDSLIPVALYLVVFLVLFIIVRPVIRPRRRRGAEA 476 (545)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 457888888777776 4889999999999999877776544433
No 76
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=23.28 E-value=1e+02 Score=21.18 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy3790 51 LLSSIPLALLDSTICWWI 68 (253)
Q Consensus 51 l~~~iPla~lds~f~~WI 68 (253)
++..||++++..++.++.
T Consensus 3 l~~lip~sl~l~~~~l~~ 20 (45)
T PF03597_consen 3 LYILIPVSLILGLIALAA 20 (45)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 456667766666554444
No 77
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=23.24 E-value=6.4e+02 Score=25.87 Aligned_cols=51 Identities=18% Similarity=0.382 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccC--------cc----hhHHHHHHHHHHHHHHHHHHH
Q psy3790 20 MLHRVVVVGVLYFCLYLISLFIRIYDDR--------SN----MLLSSIPLALLDSTICWWIFT 70 (253)
Q Consensus 20 ~~~rv~~lg~~yfv~~~i~~~~~~~~~~--------~~----~l~~~iPla~lds~f~~WIf~ 70 (253)
..+|+.-+++.+|.....++.+|...+. .. ..++++|.+++-+.+|.|-.+
T Consensus 25 E~~kflpl~Ll~f~I~~ny~~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~ 87 (509)
T COG3202 25 ELKKFLPLALLFFCILFNYNLLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLN 87 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHh
Confidence 4789999999999999999998866542 11 358889988777776666544
No 78
>PF03017 Transposase_23: TNP1/EN/SPM transposase; InterPro: IPR004264 Proteins in this group are TNP1/EN/SPM-like transposon proteins with no known function mostly from Arabidopsis thaliana []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=22.98 E-value=25 Score=26.51 Aligned_cols=11 Identities=36% Similarity=0.839 Sum_probs=8.2
Q ss_pred HHHhccCCCcc
Q psy3790 147 MILWRPMNNSQ 157 (253)
Q Consensus 147 ~~LWRPT~nn~ 157 (253)
++||||+.+=.
T Consensus 55 a~lwRP~~~v~ 65 (73)
T PF03017_consen 55 APLWRPYPEVE 65 (73)
T ss_pred ceeeccCCCcE
Confidence 57899987643
No 79
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=22.76 E-value=3.7e+02 Score=21.91 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3790 91 YTHFMHTLTFAVLASVVFML 110 (253)
Q Consensus 91 Yr~f~~~Li~aVv~Siifiv 110 (253)
||.|...++...+..+.+++
T Consensus 91 ~~~F~~fl~~~~~~~~~~~~ 110 (174)
T PF01529_consen 91 HRYFLLFLLYLCLYCLYFFI 110 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45554444444444443333
No 80
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=22.55 E-value=62 Score=25.48 Aligned_cols=22 Identities=32% Similarity=0.886 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHH--HHHhccCCC
Q psy3790 134 YWHLLFSLILVVI--MILWRPMNN 155 (253)
Q Consensus 134 fW~~Lff~vl~~I--~~LWRPT~n 155 (253)
+|.++.|++|+++ -|+|+|-.+
T Consensus 3 ~~~~i~Flil~~~l~~~~~~pi~~ 26 (132)
T PF00430_consen 3 FWQLINFLILFFLLNKFLYKPIKK 26 (132)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777766555 567888544
No 81
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=22.49 E-value=69 Score=26.84 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHH--HHHhccCCC
Q psy3790 132 DAYWHLLFSLILVVI--MILWRPMNN 155 (253)
Q Consensus 132 dafW~~Lff~vl~~I--~~LWRPT~n 155 (253)
.-+|.++.|++|+++ -|+|+|-.+
T Consensus 10 ~~~~~~inflil~~lL~~fl~kpi~~ 35 (164)
T PRK14473 10 LLIAQLINFLLLIFLLRTFLYRPVLN 35 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788778777776 578999543
No 82
>PF10268 Tmemb_161AB: Predicted transmembrane protein 161AB; InterPro: IPR019395 This entry represents a family of conserved eukaryotic proteins. Members are putative transmembrane proteins but otherwise the function is not known.
Probab=22.43 E-value=3e+02 Score=27.85 Aligned_cols=34 Identities=26% Similarity=0.476 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3790 83 HNLVKLTLYTHFMHTLTFAVLASVVFMLYSIKEH 116 (253)
Q Consensus 83 rQ~vKL~mYr~f~~~Li~aVv~Siifiv~s~~~~ 116 (253)
.+..+|..|.++.+.+.+++.+.+++.+-+.+.+
T Consensus 92 ~d~l~L~~Y~ey~WLvdFav~~~~Vyl~tE~y~~ 125 (486)
T PF10268_consen 92 SDVLVLRYYTEYQWLVDFAVYALVVYLFTEVYYF 125 (486)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999999998888887766654
No 83
>cd03501 SQR_TypeA_SdhC_like Succinate:quinone oxidoreductase (SQR) Type A subfamily, Succinate dehydrogenase C (SdhC)-like subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this subfamily reduce low potential quinones such as menaquinone and thermoplasmaquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are similar to the Thermoplasma acidophilum SQR and are classified as Type A because they contain two transmembrane subunits as well as two heme groups. Although there are no structures available for this subfamily, the presence of two hemes has been proven spectroscopically for T. acidophilum. The two membrane anchor subunits are similar to the SdhD and SdhC subunits of bacteria
Probab=22.42 E-value=3.5e+02 Score=20.48 Aligned_cols=62 Identities=13% Similarity=0.227 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCc--c--hhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3790 20 MLHRVVVVGVLYFCLYLISLFIRIYDDRS--N--MLLSSIPL-----ALLDSTICWWIFTSLVHTIRTLRL 81 (253)
Q Consensus 20 ~~~rv~~lg~~yfv~~~i~~~~~~~~~~~--~--~l~~~iPl-----a~lds~f~~WIf~SL~~T~~~Lk~ 81 (253)
.+||+.+++++.|+..-+........+.. + ....--|. .++-.++.+-....+..++.++..
T Consensus 5 ~lhRitGi~L~~fl~~hl~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~l~~~~~~~H~~~Gir~~~~d~g~ 75 (101)
T cd03501 5 VLHRITGVVILFYLFLHVLDLSSLRRGPETYNAVIATYKSPIFKLGEFGLVAAVVFHALNGIRLILVDFGS 75 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence 46888888877665543333322221111 1 11111232 222334455566777777777654
No 84
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=22.28 E-value=3.9e+02 Score=20.95 Aligned_cols=27 Identities=15% Similarity=0.598 Sum_probs=21.8
Q ss_pred ccccee-hhhhhhHHHHHHHHHHHHHHH
Q psy3790 122 LTHWKE-LWIDDAYWHLLFSLILVVIMI 148 (253)
Q Consensus 122 ~~~Wk~-~Wi~dafW~~Lff~vl~~I~~ 148 (253)
-++|.. .++..++|-++|+.+|.+++-
T Consensus 46 ~s~WttsMf~~Q~ami~vYS~VFT~L~s 73 (85)
T PF10749_consen 46 FSEWTTSMFILQGAMILVYSIVFTILLS 73 (85)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567886 677899999999998877654
No 85
>PF11045 YbjM: Putative inner membrane protein of Enterobacteriaceae; InterPro: IPR020368 This entry contains membrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=21.92 E-value=2e+02 Score=24.12 Aligned_cols=61 Identities=23% Similarity=0.407 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccee-hhh-hhhHHHHHHHHHHHHHHHHhccCCCc
Q psy3790 94 FMHTLTFAVLASVVFMLYSIKEHRLALCLTHWKE-LWI-DDAYWHLLFSLILVVIMILWRPMNNS 156 (253)
Q Consensus 94 f~~~Li~aVv~Siifiv~s~~~~~~~~~~~~Wk~-~Wi-~dafW~~Lff~vl~~I~~LWRPT~nn 156 (253)
+...|++|.+++.+.++.-...+ ....+.|++ .|. .--||-.+=-..+..+..++++..+-
T Consensus 61 v~~pL~GAllAap~clLl~~~~~--~~~rs~wQelAw~~SAvFWc~lGAL~~lf~~~l~~~~~~~ 123 (125)
T PF11045_consen 61 VLSPLLGALLAAPVCLLLMHLWF--APSRSFWQELAWLFSAVFWCALGALLVLFLRSLLQRRRHH 123 (125)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Confidence 34466777777655544322222 234778886 887 46677654444445556666665543
No 86
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=21.53 E-value=3e+02 Score=26.22 Aligned_cols=51 Identities=22% Similarity=0.176 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHH
Q psy3790 51 LLSSIPLALLDS---TICWWIFTSLVHTIRTLRLR-HNLVKLTLYTHFMHTLTFAVL 103 (253)
Q Consensus 51 l~~~iPla~lds---~f~~WIf~SL~~T~~~Lk~r-rQ~vKL~mYr~f~~~Li~aVv 103 (253)
.+..+|+.++.. +|..-.|.||-+.-+.++.+ +++-|++- -..++-+|+++
T Consensus 181 ~fvl~Pl~i~l~iG~~fL~~G~~~l~rir~~~~~~~~~~~Kl~k--lm~RiGiFsvl 235 (328)
T PF01534_consen 181 GFVLAPLFIYLLIGTVFLLAGFVSLFRIRRSMKHDGTKTSKLEK--LMIRIGIFSVL 235 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcccccchhhHHH--HHHHHHHHHHH
Confidence 488889887655 44555677777766666654 34555532 22345555553
No 87
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=21.52 E-value=2.8e+02 Score=26.58 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy3790 51 LLSSIPLALLDSTICWWIFT 70 (253)
Q Consensus 51 l~~~iPla~lds~f~~WIf~ 70 (253)
++..++++++|..+=.|-|.
T Consensus 190 ~~~~~via~~D~~~qr~~~~ 209 (342)
T TIGR01404 190 LGFFLVVGLADFAFQRYLFM 209 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46777888899888888754
No 88
>PRK10663 cytochrome o ubiquinol oxidase subunit III; Provisional
Probab=21.36 E-value=5.6e+02 Score=22.47 Aligned_cols=58 Identities=12% Similarity=0.197 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3790 52 LSSIPLALLDSTICWWIFTSLVHTIRTLRLRHNLVKLTLYTHFMHTLTFAVLASVVFMLYSIKEH 116 (253)
Q Consensus 52 ~~~iPla~lds~f~~WIf~SL~~T~~~Lk~rrQ~vKL~mYr~f~~~Li~aVv~Siifiv~s~~~~ 116 (253)
..-+|++.+++++..-.-.++....+..|..|+ ++....|..+++..++|++.....+
T Consensus 63 ~~~lp~~~~nT~iLl~SS~~~~~A~~a~~~~~~-------~~~~~~L~~t~~LG~~Fl~~Q~~Ey 120 (204)
T PRK10663 63 IFELPFVLVETFLLLFSSITYGMAAIAMYKNNK-------SQVISWLALTFLFGAGFIGMEIYEF 120 (204)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777776543332223333334433222 2233346667777777877655443
No 89
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=21.25 E-value=7.5e+02 Score=27.63 Aligned_cols=31 Identities=10% Similarity=0.371 Sum_probs=22.3
Q ss_pred eehhhhhhHHHHHHHHHHHHHHHHhccCCCc
Q psy3790 126 KELWIDDAYWHLLFSLILVVIMILWRPMNNS 156 (253)
Q Consensus 126 k~~Wi~dafW~~Lff~vl~~I~~LWRPT~nn 156 (253)
-.+|+...+|-+...++++++..+.||....
T Consensus 200 ~~~~~~~~~~~~~~~~l~~a~~~l~r~~~~~ 230 (1094)
T PRK02983 200 PPVWVNALLGLFGAAALIAALIVLFRSQRAD 230 (1094)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 3467777777776677777888889986543
No 90
>KOG4581|consensus
Probab=21.06 E-value=7e+02 Score=23.46 Aligned_cols=16 Identities=19% Similarity=0.322 Sum_probs=11.8
Q ss_pred HhhHHHHHHHHHHHHH
Q psy3790 81 LRHNLVKLTLYTHFMH 96 (253)
Q Consensus 81 ~rrQ~vKL~mYr~f~~ 96 (253)
.-||++||+.|--+++
T Consensus 326 lp~qtakln~~~gi~y 341 (359)
T KOG4581|consen 326 LPQQTAKLNFFFGIFY 341 (359)
T ss_pred cchhhhhHHHHHHHHH
Confidence 4589999998765544
No 91
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=20.80 E-value=7e+02 Score=23.39 Aligned_cols=65 Identities=15% Similarity=0.089 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccceehhhh
Q psy3790 63 TICWWIFTSLVHTIRTLRLRHNLVKLTLYTHFMHTLTFAVLASVVFMLYSIKEHRLALCLTHWKELWID 131 (253)
Q Consensus 63 ~f~~WIf~SL~~T~~~Lk~rrQ~vKL~mYr~f~~~Li~aVv~Siifiv~s~~~~~~~~~~~~Wk~~Wi~ 131 (253)
.|...-..-+.+..++|+..|.. .++.++..+....+.++++-+.++...+......-+|..|..
T Consensus 22 lFllfL~~~~~~s~~KL~~~~Sp----I~~tyY~llw~v~llnl~rc~vsm~~~~~~~~~~~d~~lW~i 86 (261)
T PF10160_consen 22 LFLLFLAWRLRKSRRKLRHTRSP----IFITYYALLWVVALLNLARCFVSMWVCSPGKGGIADKVLWNI 86 (261)
T ss_pred HHHHHHHHhchHHHHHHhcCCCc----cHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHH
Confidence 44444444566777777766665 566676666666677777766665543322233445556654
No 92
>PF03268 DUF267: Caenorhabditis protein of unknown function, DUF267; InterPro: IPR004950 This family of proteins, from Caenorhabditis species, have not been characterised though a number are annotated as 'serpentine receptor, class r' proteins.
Probab=20.77 E-value=8e+02 Score=24.00 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q psy3790 51 LLSSIPLALLDSTICWWI----FTSLVHTIRTLRLRHN--LVKLTLYTHFMH-TLTFAVLASVVFMLYSIK 114 (253)
Q Consensus 51 l~~~iPla~lds~f~~WI----f~SL~~T~~~Lk~rrQ--~vKL~mYr~f~~-~Li~aVv~Siifiv~s~~ 114 (253)
-+..+--.+|--|++.|. +..-.+++.++|.-|. --|+.=||.++. ++++++---++++.++++
T Consensus 64 gF~~~~s~~c~~cl~~wT~~~fi~~f~~~L~~lR~LRv~~n~~~D~Y~~lh~kafi~s~pw~v~~~s~aiy 134 (353)
T PF03268_consen 64 GFMAMQSFVCAICLFGWTKNGFIPKFEKKLARLRTLRVEPNQEIDDYRILHRKAFIFSIPWFVAFMSTAIY 134 (353)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555566777889996 3334444544444333 256999999997 455555444445555554
No 93
>COG0795 Predicted permeases [General function prediction only]
Probab=20.69 E-value=1.8e+02 Score=27.15 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=26.5
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccCcc---hhHHHHHH
Q psy3790 10 FGIVKPRLGAMLHRVVVVGVLYFCLYLISLFIRIYDDRSN---MLLSSIPL 57 (253)
Q Consensus 10 YGVVkP~Lg~~~~rv~~lg~~yfv~~~i~~~~~~~~~~~~---~l~~~iPl 57 (253)
.|...||-|+...+....++++|++..+............ .+.+.+|.
T Consensus 297 l~~~~~R~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~p~~a~~~p~ 347 (364)
T COG0795 297 LSLRNPRSGRLGLRLLGGILLGLLFYVLLFLLGALALAGKLPPFLAAWLPN 347 (364)
T ss_pred HhhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHH
Confidence 3444777666666666666666666666555444333332 44444444
No 94
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=20.57 E-value=1.3e+02 Score=23.60 Aligned_cols=31 Identities=13% Similarity=0.343 Sum_probs=18.9
Q ss_pred cccceehhhhhhHHHHHHHHHHHHHHHHhccC
Q psy3790 122 LTHWKELWIDDAYWHLLFSLILVVIMILWRPM 153 (253)
Q Consensus 122 ~~~Wk~~Wi~dafW~~Lff~vl~~I~~LWRPT 153 (253)
...||.-.|.-+||-+..+ +.++.+-+.++.
T Consensus 46 sh~WRN~GIli~f~i~f~~-~~~~~~e~~~~~ 76 (103)
T PF06422_consen 46 SHRWRNFGILIAFWIFFIV-LTLLATEFIKFE 76 (103)
T ss_pred cchhhhHHHHHHHHHHHHH-HHHHHHHHhccc
Confidence 6678888888888876333 333444444443
No 95
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=20.49 E-value=75 Score=28.62 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHH--HHHhccCCC
Q psy3790 132 DAYWHLLFSLILVVI--MILWRPMNN 155 (253)
Q Consensus 132 dafW~~Lff~vl~~I--~~LWRPT~n 155 (253)
+-+|.++.|++|+++ -|+|+|-.+
T Consensus 7 t~~~qiInFlil~~lL~kfl~kPi~~ 32 (246)
T TIGR03321 7 TVIAQLINFLILVWLLKRFLYRPILD 32 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 567888777777766 588999543
No 96
>KOG1607|consensus
Probab=20.41 E-value=5.8e+02 Score=24.56 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHh
Q psy3790 69 FTSLVHTIRTLRLR 82 (253)
Q Consensus 69 f~SL~~T~~~Lk~r 82 (253)
+.+++++.++++.+
T Consensus 201 ~Le~~K~~nY~~~~ 214 (318)
T KOG1607|consen 201 FLELGKMLNYLQFE 214 (318)
T ss_pred HHHHHHHHchhhHH
Confidence 56677777777765
No 97
>PF06673 L_lactis_ph-MCP: Lactococcus lactis bacteriophage major capsid protein; InterPro: IPR009559 This family consists of several Lactococcus lactis bacteriophage major capsid proteins.
Probab=20.37 E-value=11 Score=34.48 Aligned_cols=41 Identities=22% Similarity=0.363 Sum_probs=28.4
Q ss_pred HHhhhhhcc-ccccCCCCCCCCCCCCCCCCCCCCCCcccccchhhccCCcc
Q psy3790 178 EQFINQNMV-GMKMRPPPEDSTSPKPRPHPSSTLSPQEDLDRACQAVMPSL 227 (253)
Q Consensus 178 ~~~~~~~~~-g~k~r~~~~~~~~~~~~~~~~~~~~~~~dlkw~veenips~ 227 (253)
..|+.++++ |+|.|..... .. ...+..|.||=.-|.||||-
T Consensus 7 qemmkqaieagvkvreleak-----ve----elnkereelkkereanipse 48 (347)
T PF06673_consen 7 QEMMKQAIEAGVKVRELEAK-----VE----ELNKEREELKKEREANIPSE 48 (347)
T ss_pred HHHHHHHHHhccchHHHHHH-----HH----HHHHHHHHHHHhhhcCCCCC
Confidence 346788887 9999987532 10 11356778887789999994
No 98
>KOG0916|consensus
Probab=20.17 E-value=9.5e+02 Score=28.13 Aligned_cols=9 Identities=44% Similarity=0.611 Sum_probs=5.2
Q ss_pred hHHHHHHHH
Q psy3790 51 LLSSIPLAL 59 (253)
Q Consensus 51 l~~~iPla~ 59 (253)
.+..+|++.
T Consensus 1527 ~~s~~~i~~ 1535 (1679)
T KOG0916|consen 1527 ILSWAPIAA 1535 (1679)
T ss_pred hhHHHHHHH
Confidence 456666655
Done!