Query psy3790
Match_columns 253
No_of_seqs 149 out of 238
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 17:28:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3790.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3790hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h88_C Succinate dehydrogenase 43.8 1E+02 0.0035 24.4 7.9 21 11-31 28-51 (140)
2 1zoy_C Large cytochrome bindin 43.3 1E+02 0.0036 24.3 7.9 21 11-31 28-51 (140)
3 1nkz_B Light-harvesting protei 28.7 59 0.002 21.2 3.4 23 130-152 15-38 (41)
4 4eiy_A Adenosine receptor A2A/ 27.7 2.5E+02 0.0084 24.3 8.5 28 52-80 210-237 (447)
5 1lgh_B LH II, B800/850, light 25.6 70 0.0024 21.2 3.4 24 129-152 19-43 (45)
6 3vr8_C Cytochrome B-large subu 19.8 4E+02 0.014 22.4 10.4 99 11-111 61-173 (188)
7 2j4t_A Angiogenin-4; angiogene 19.7 23 0.00078 28.6 0.0 18 2-19 8-25 (144)
8 1pp9_D Cytochrome C-1, cytochr 18.7 62 0.0021 28.5 2.6 20 131-150 203-222 (241)
9 1dx7_A Light-harvesting protei 18.7 69 0.0024 21.5 2.2 24 129-152 22-46 (48)
10 2rdd_B UPF0092 membrane protei 17.8 1.6E+02 0.0053 18.2 3.7 20 52-71 4-23 (37)
No 1
>2h88_C Succinate dehydrogenase cytochrome B, large subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 2h89_C* 1yq3_C* 1yq4_C* 2fbw_C* 2wqy_C*
Probab=43.77 E-value=1e+02 Score=24.44 Aligned_cols=21 Identities=29% Similarity=0.191 Sum_probs=15.5
Q ss_pred cccccccch---hHHHHHHHHHHH
Q psy3790 11 GIVKPRLGA---MLHRVVVVGVLY 31 (253)
Q Consensus 11 GVVkP~Lg~---~~~rv~~lg~~y 31 (253)
.|-||.++. .+||+-+++...
T Consensus 28 ~iYr~~lt~~~SIlHRiTGv~L~~ 51 (140)
T 2h88_C 28 SIYKWSLPMAMSITHRGTGVALSL 51 (140)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHHHHHHH
Confidence 567888875 488998877654
No 2
>1zoy_C Large cytochrome binding protein, FAD-binding protein; succinate, ubiquinone oxidoreductase, mitochondrial respiratory complex II; HET: FAD HEM EPH UQ1; 2.40A {Sus scrofa} PDB: 1zp0_C* 3abv_C* 3ae1_C* 3ae2_C* 3ae3_C* 3ae4_C* 3ae5_C* 3ae6_C* 3ae7_C* 3ae8_C* 3ae9_C* 3aea_C* 3aeb_C* 3aec_C* 3aed_C* 3aee_C* 3aef_C* 3aeg_C* 3sfd_C* 3sfe_C*
Probab=43.28 E-value=1e+02 Score=24.32 Aligned_cols=21 Identities=19% Similarity=0.116 Sum_probs=15.5
Q ss_pred cccccccch---hHHHHHHHHHHH
Q psy3790 11 GIVKPRLGA---MLHRVVVVGVLY 31 (253)
Q Consensus 11 GVVkP~Lg~---~~~rv~~lg~~y 31 (253)
.|-||.++. .+||+-+++...
T Consensus 28 ~iYr~~~t~~~SIlHRiTGv~L~~ 51 (140)
T 1zoy_C 28 TIYRWSLPMAMSICHRGTGIALSA 51 (140)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHHHHHHH
Confidence 567888875 488998877654
No 3
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=28.69 E-value=59 Score=21.16 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=13.2
Q ss_pred hhhhHHHHHHHHHHH-HHHHHhcc
Q psy3790 130 IDDAYWHLLFSLILV-VIMILWRP 152 (253)
Q Consensus 130 i~dafW~~Lff~vl~-~I~~LWRP 152 (253)
+.++++-+.-..+++ +.+|.|||
T Consensus 15 ~~~~~~~F~~iA~vAH~l~w~wrP 38 (41)
T 1nkz_B 15 VIDGTRVFLGLALVAHFLAFSATP 38 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455555544444333 34789999
No 4
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=27.75 E-value=2.5e+02 Score=24.28 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3790 52 LSSIPLALLDSTICWWIFTSLVHTIRTLR 80 (253)
Q Consensus 52 ~~~iPla~lds~f~~WIf~SL~~T~~~Lk 80 (253)
..++|+.++ .+.|.-|+..+.+..+..+
T Consensus 210 ~~~lP~~ii-~~~y~~I~~~l~~~~~~~~ 237 (447)
T 4eiy_A 210 CVLVPLLLM-LGVYLRIFLAARRQLADLE 237 (447)
T ss_dssp CCHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhhhhh
Confidence 456776544 5667788888877766544
No 5
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=25.60 E-value=70 Score=21.21 Aligned_cols=24 Identities=13% Similarity=0.505 Sum_probs=14.0
Q ss_pred hhhhhHHHHHHHHHHH-HHHHHhcc
Q psy3790 129 WIDDAYWHLLFSLILV-VIMILWRP 152 (253)
Q Consensus 129 Wi~dafW~~Lff~vl~-~I~~LWRP 152 (253)
.+.++++-+.-..+++ +.+|.|||
T Consensus 19 ~~~~~~~~F~~iA~vAH~L~~~wrP 43 (45)
T 1lgh_B 19 QFKTTFSAFIILAAVAHVLVWVWKP 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456665544444443 34789998
No 6
>3vr8_C Cytochrome B-large subunit; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_C*
Probab=19.79 E-value=4e+02 Score=22.37 Aligned_cols=99 Identities=21% Similarity=0.202 Sum_probs=45.6
Q ss_pred cccccccch---hHHHHHHHHHHHHHHHHHHHHHHhhccCcc--hhHH--HHHHHHHH-------HHHHHHHHHHHHHHH
Q psy3790 11 GIVKPRLGA---MLHRVVVVGVLYFCLYLISLFIRIYDDRSN--MLLS--SIPLALLD-------STICWWIFTSLVHTI 76 (253)
Q Consensus 11 GVVkP~Lg~---~~~rv~~lg~~yfv~~~i~~~~~~~~~~~~--~l~~--~iPla~ld-------s~f~~WIf~SL~~T~ 76 (253)
.|-||.++- .+||+-++++..++....-..+...+.... -++. .+|..+.. .+|.+-.+..+...+
T Consensus 61 tIYr~qlt~~~SIlHRITGv~L~~~l~l~~la~l~sp~~f~~~~~~~~s~~lp~~i~~lvk~~l~~a~~yH~~nGIRHLi 140 (188)
T 3vr8_C 61 TIYKPQMTWMVSGLHRVTGCAMAGTLLIGGVGFSVLPLDFTTFVEFIRGLGIPWVILDTFKFIIAFPIAFHTLNGIRFIG 140 (188)
T ss_pred CeeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 466888875 478998877653322222222211111111 1111 12322221 122222333343333
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3790 77 RTLRLRHNLVKLTLYTHFMHTLTFAVLASVVFMLY 111 (253)
Q Consensus 77 ~~Lk~rrQ~vKL~mYr~f~~~Li~aVv~Siifiv~ 111 (253)
=++ -+-..+-+.|+.-+.+++++++.+++..++
T Consensus 141 wD~--G~gl~l~~~~~sg~~vl~lSvvltl~la~~ 173 (188)
T 3vr8_C 141 FDM--AKGTDIPSIYRGAYLVLGLAALISLAVVVY 173 (188)
T ss_pred HHh--cccccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 332 123334556666666777787777765554
No 7
>2j4t_A Angiogenin-4; angiogenesis, endonuclease, differentiation, cancer, nuclease, hydrolase, ribonuclease, developmental protein; 2.02A {Mus musculus}
Probab=19.67 E-value=23 Score=28.60 Aligned_cols=18 Identities=33% Similarity=0.698 Sum_probs=0.0
Q ss_pred EEEEEEecccccccccch
Q psy3790 2 LVIVVSLGFGIVKPRLGA 19 (253)
Q Consensus 2 LlLIVSLGYGVVkP~Lg~ 19 (253)
|+|++.||.|.+.|+|++
T Consensus 8 llll~ll~l~~~~~s~~~ 25 (144)
T 2j4t_A 8 LLLVFVLGLVVIPPTLAQ 25 (144)
T ss_dssp ------------------
T ss_pred HHHHHHHHHhcccccccc
Confidence 678888999999999975
No 8
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=18.74 E-value=62 Score=28.48 Aligned_cols=20 Identities=15% Similarity=0.077 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHHHHHHh
Q psy3790 131 DDAYWHLLFSLILVVIMILW 150 (253)
Q Consensus 131 ~dafW~~Lff~vl~~I~~LW 150 (253)
.-|+|-++|+++|.+++|+|
T Consensus 203 ~~G~~vl~fL~il~~l~y~~ 222 (241)
T 1pp9_D 203 RMGLKMLLMMGLLLPLVYAM 222 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999864
No 9
>1dx7_A Light-harvesting protein B-875-beta chain; bacteriochlorophyll binding, membrane protein, photosynthesis; NMR {Rhodobacter sphaeroides} SCOP: f.3.1.1 PDB: 1jo5_A
Probab=18.71 E-value=69 Score=21.53 Aligned_cols=24 Identities=21% Similarity=0.549 Sum_probs=14.0
Q ss_pred hhhhhHHHHHHHHHHH-HHHHHhcc
Q psy3790 129 WIDDAYWHLLFSLILV-VIMILWRP 152 (253)
Q Consensus 129 Wi~dafW~~Lff~vl~-~I~~LWRP 152 (253)
.+.++++-+.-..+++ +.+|.|||
T Consensus 22 ~~~~~~~~F~~iA~vAH~l~w~wrP 46 (48)
T 1dx7_A 22 VYMSGLWLFSAVAIVAHLAVYIWRP 46 (48)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456665544444333 34789998
No 10
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=17.85 E-value=1.6e+02 Score=18.17 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3790 52 LSSIPLALLDSTICWWIFTS 71 (253)
Q Consensus 52 ~~~iPla~lds~f~~WIf~S 71 (253)
..++|++++-++||+.+++.
T Consensus 4 ~~~l~~v~~~~ifYFl~iRP 23 (37)
T 2rdd_B 4 SLILMLVVFGLIFYFMILRP 23 (37)
T ss_dssp HHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34667777777888777554
Done!