Query psy3790
Match_columns 253
No_of_seqs 149 out of 238
Neff 5.1
Searched_HMMs 13730
Date Fri Aug 16 17:28:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3790.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3790hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 43.6 65 0.0047 25.4 9.4 11 123-133 180-190 (447)
2 d1lghb_ f.3.1.1 (B:) Light-har 38.0 16 0.0011 22.6 3.4 23 130-152 18-41 (43)
3 d2bs2c1 f.21.2.1 (C:1-254) Fum 35.3 1E+02 0.0076 24.7 11.0 25 57-81 83-107 (254)
4 d1nekc_ f.21.2.2 (C:) Succinat 28.3 95 0.0069 22.1 11.0 21 11-31 16-39 (129)
5 d1jo5a_ f.3.1.1 (A:) Light-har 25.5 23 0.0017 22.3 2.6 23 130-152 23-46 (48)
6 d3ehbb2 f.17.2.1 (B:1-107) Bac 23.0 1.1E+02 0.0082 21.1 8.4 27 122-148 68-94 (107)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 16.0 1.6E+02 0.011 19.9 8.6 27 122-148 62-88 (100)
8 d2ftxb1 d.300.1.2 (B:155-213) 10.9 46 0.0033 21.7 1.3 12 84-95 4-15 (59)
9 d2a65a1 f.54.1.1 (A:5-513) Na( 10.4 3.1E+02 0.023 23.2 7.5 29 52-81 406-434 (509)
10 d2iuba2 f.17.3.1 (A:286-349) M 9.1 80 0.0059 19.8 2.1 25 17-41 2-26 (64)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=43.64 E-value=65 Score=25.43 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=5.6
Q ss_pred ccceehhhhhh
Q psy3790 123 THWKELWIDDA 133 (253)
Q Consensus 123 ~~Wk~~Wi~da 133 (253)
..|+..++..+
T Consensus 180 ~~w~~~~~~~~ 190 (447)
T d1pw4a_ 180 NDWHAALYMPA 190 (447)
T ss_dssp CCSTTCTHHHH
T ss_pred hcccccchhhh
Confidence 35665554433
No 2
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=38.03 E-value=16 Score=22.65 Aligned_cols=23 Identities=13% Similarity=0.566 Sum_probs=14.2
Q ss_pred hhhhHHHHHHHHHHH-HHHHHhcc
Q psy3790 130 IDDAYWHLLFSLILV-VIMILWRP 152 (253)
Q Consensus 130 i~dafW~~Lff~vl~-~I~~LWRP 152 (253)
+.+++|-+.-.++++ +.+|+|||
T Consensus 18 ~~~g~~~F~~iAvvAHiLvw~wrP 41 (43)
T d1lghb_ 18 FKTTFSAFIILAAVAHVLVWVWKP 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456666554444444 34899999
No 3
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=35.32 E-value=1e+02 Score=24.67 Aligned_cols=25 Identities=12% Similarity=0.014 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3790 57 LALLDSTICWWIFTSLVHTIRTLRL 81 (253)
Q Consensus 57 la~lds~f~~WIf~SL~~T~~~Lk~ 81 (253)
..++-..+..-++.++.+..++-++
T Consensus 83 ~~~l~~~ll~H~~~a~~~~~~~~~~ 107 (254)
T d2bs2c1 83 AAFVFAVFIAHAFLAMRKFPINYRQ 107 (254)
T ss_dssp HHHHHHHHHHHHHHHGGGSCCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666544433333
No 4
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=28.25 E-value=95 Score=22.05 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=14.1
Q ss_pred cccccccch---hHHHHHHHHHHH
Q psy3790 11 GIVKPRLGA---MLHRVVVVGVLY 31 (253)
Q Consensus 11 GVVkP~Lg~---~~~rv~~lg~~y 31 (253)
.|-||.+.. .+||+.++.+..
T Consensus 16 ~iyk~~~t~~~SI~HRisGv~l~~ 39 (129)
T d1nekc_ 16 QTIRFPITAIASILHRVSGVITFV 39 (129)
T ss_dssp GGSCCCHHHHHHHHHHHHHHHHHH
T ss_pred ceeCchHHHHHHHHHHHHHHHHHH
Confidence 456777765 478998876543
No 5
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=25.52 E-value=23 Score=22.32 Aligned_cols=23 Identities=22% Similarity=0.611 Sum_probs=13.4
Q ss_pred hhhhHHHHHHHHHHH-HHHHHhcc
Q psy3790 130 IDDAYWHLLFSLILV-VIMILWRP 152 (253)
Q Consensus 130 i~dafW~~Lff~vl~-~I~~LWRP 152 (253)
+.+++|-+.--++.+ +.+|+|||
T Consensus 23 ~~~g~~~F~~iAvvAH~L~w~wrP 46 (48)
T d1jo5a_ 23 YMSGLWLFSAVAIVAHLAVYIWRP 46 (48)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 355665544444333 34799999
No 6
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=23.04 E-value=1.1e+02 Score=21.10 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=19.5
Q ss_pred cccceehhhhhhHHHHHHHHHHHHHHH
Q psy3790 122 LTHWKELWIDDAYWHLLFSLILVVIMI 148 (253)
Q Consensus 122 ~~~Wk~~Wi~dafW~~Lff~vl~~I~~ 148 (253)
...-.+.-..+-.|.++=.++++++++
T Consensus 68 ~~~~~~n~~lEi~WTviP~lIL~~lai 94 (107)
T d3ehbb2 68 PARFTHNTPIEVIWTLVPVLILVAIGA 94 (107)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHH
Confidence 334455567889999888888877765
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=16.00 E-value=1.6e+02 Score=19.88 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=19.1
Q ss_pred cccceehhhhhhHHHHHHHHHHHHHHH
Q psy3790 122 LTHWKELWIDDAYWHLLFSLILVVIMI 148 (253)
Q Consensus 122 ~~~Wk~~Wi~dafW~~Lff~vl~~I~~ 148 (253)
.....+.-..+-.|.++=.++++++++
T Consensus 62 ~~~~~~n~~LEiiWTviP~lILi~l~~ 88 (100)
T d3dtub2 62 PARFTHNSPLEIAWTIVPIVILVAIGA 88 (100)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCcchHHHHHHHHHHHHHHHHHH
Confidence 344556567888898887777777765
No 8
>d2ftxb1 d.300.1.2 (B:155-213) Kinetochore protein Spc24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.95 E-value=46 Score=21.68 Aligned_cols=12 Identities=42% Similarity=0.711 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHH
Q psy3790 84 NLVKLTLYTHFM 95 (253)
Q Consensus 84 Q~vKL~mYr~f~ 95 (253)
+..||++||.|-
T Consensus 4 ~iLkLklYRSLG 15 (59)
T d2ftxb1 4 NILKLKLYRSLG 15 (59)
T ss_dssp HHHHHHHHHHTT
T ss_pred ceeeeeehhhcc
Confidence 567888888874
No 9
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=10.40 E-value=3.1e+02 Score=23.17 Aligned_cols=29 Identities=17% Similarity=0.393 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3790 52 LSSIPLALLDSTICWWIFTSLVHTIRTLRL 81 (253)
Q Consensus 52 ~~~iPla~lds~f~~WIf~SL~~T~~~Lk~ 81 (253)
+..+.++++.++++.|+.. ..+-.++++.
T Consensus 406 ~~l~~~~l~e~i~v~w~yg-~~r~~~di~~ 434 (509)
T d2a65a1 406 IGVVFFGLTELIIFFWIFG-ADKAWEEINR 434 (509)
T ss_dssp HHHHHHHHHHHHHHHTTSC-HHHHHHHHHT
T ss_pred HHHHHHHHHHHheeeeEec-HHHHHHHHHh
Confidence 4445556677777889854 3444445543
No 10
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=9.12 E-value=80 Score=19.79 Aligned_cols=25 Identities=8% Similarity=0.296 Sum_probs=19.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHH
Q psy3790 17 LGAMLHRVVVVGVLYFCLYLISLFI 41 (253)
Q Consensus 17 Lg~~~~rv~~lg~~yfv~~~i~~~~ 41 (253)
.++.+++.-.+++++.-.+.+.++.
T Consensus 2 ~N~~mk~lT~it~iflP~t~i~gif 26 (64)
T d2iuba2 2 TNEVMKVLTIIATIFMPLTFIAGIY 26 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4567888889999998888877653
Done!