RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3790
(253 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.010
Identities = 23/147 (15%), Positives = 45/147 (30%), Gaps = 54/147 (36%)
Query: 109 M---LYSIKEHRLALCLTHWKELWIDDAYWHLL----FSLILVVIMILWRPMNNSQRYAF 161
M LY K + A +++W + A H FS++ +V +NN
Sbjct: 1631 MGMDLY--KTSKAA------QDVW-NRADNHFKDTYGFSILDIV-------INN------ 1668
Query: 162 TPLLDPTLDEEDDEEVEQFINQNMVGMKMRPPPEDSTSPKPRPHPSSTLSPQEDLDRACQ 221
P L E + I +N M + +
Sbjct: 1669 -P---VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK------------------- 1705
Query: 222 AVMPSLLDSTVLPLLDSDEELMN-TRF 247
+ + + + S++ L++ T+F
Sbjct: 1706 -IFKEINEHSTSYTFRSEKGLLSATQF 1731
Score = 28.1 bits (62), Expect = 3.5
Identities = 26/175 (14%), Positives = 49/175 (28%), Gaps = 53/175 (30%)
Query: 74 HTIRTLRLRHNLVKLTLYTHFMHTLTFAVLASVVFMLYSIKEHRLALCLTHWKELWIDD- 132
++ R L L H + V + F+ ++E + + DD
Sbjct: 4 YSTRPLTLSHGSL----------EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDE 53
Query: 133 --AYWHLLFSLILVVIMILWRPMNNSQRYAFTPLLDPTLDE-EDDEEVEQFINQN---MV 186
L+ + V + S+ F +L+ L E E+ ++ N +
Sbjct: 54 PTTPAELVGKFLGYVS----SLVEPSKVGQFDQVLNLCLTEFENC-----YLEGNDIHAL 104
Query: 187 GMKMRPPPEDST-------------------SPKPRPHPSSTLSPQEDLDRACQA 222
K+ D+T P + S+ L RA
Sbjct: 105 AAKL-LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA-------LFRAVGE 151
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA
binding protein, argonaute, miRNA, siRNA; 3.65A
{Neurospora crassa}
Length = 437
Score = 29.7 bits (66), Expect = 0.83
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 11/75 (14%)
Query: 170 DEEDDEEVEQFINQ-----NMVGMKMRPPPEDSTSPKPRPHPSSTLSPQEDLDRACQAVM 224
+ +E V Q + N G+ + P S + ++L + Q V+
Sbjct: 24 GSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEFFAKVKELMSSHQFVV 83
Query: 225 PSLLDSTVLPLLDSD 239
+LP D
Sbjct: 84 ------VLLPRKDVA 92
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding
protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A
{Neurospora crassa} PDB: 2xdy_A
Length = 388
Score = 28.9 bits (64), Expect = 1.5
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 11/75 (14%)
Query: 170 DEEDDEEVEQFINQ-----NMVGMKMRPPPEDSTSPKPRPHPSSTLSPQEDLDRACQAVM 224
+ +E V Q + N G+ + P S + ++L + Q V+
Sbjct: 24 GSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEFFAKVKELMSSHQFVV 83
Query: 225 PSLLDSTVLPLLDSD 239
+LP D
Sbjct: 84 ------VLLPRKDVA 92
>2jh1_A MIC1, micronemal protein 1; cell adhesion, microneme, MAR domain,
cell invasion; 1.90A {Toxoplasma gondii} PDB: 2jh7_A*
2jhd_A* 3f53_A* 3f5a_A* 3f5e_A*
Length = 246
Score = 28.8 bits (63), Expect = 1.7
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 192 PPPEDSTSPKPRPHPSSTLSPQEDLDRACQAVMPSLLDSTV 232
P S P + Q+ LD+ CQ + L S +
Sbjct: 3 PEAYGEASHSHSPASGRYI--QQMLDQRCQEIAAELCQSGL 41
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear
protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Length = 425
Score = 29.1 bits (64), Expect = 1.7
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 152 PMNNSQRY---AFTPLLDPTLDEEDDEEVEQFINQNMVGMKMRPPPEDSTSPKPRPHPSS 208
P+N S A L L ++V Q I +N G+ + P ++++S P +S
Sbjct: 113 PINVSDNPYTAADNFLARYELPMSYRDQVVQLILKNTNGISLDQPNDNASSSAVSPSKTS 172
Query: 209 TLSP 212
+
Sbjct: 173 VMKV 176
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse,
BAR domain, endocytosis; 2.60A {Mus musculus} PDB:
3qe6_A
Length = 320
Score = 27.9 bits (61), Expect = 3.3
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 174 DEEVEQFINQNMVGMKMRPP-PEDSTSPKPRPHPSSTLSPQ 213
+E++ + + + GM M P E+ + R +
Sbjct: 278 EEDLRWWRSTHGPGMAMNWPQFEEWSLDTQRAISRKEKGGR 318
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation
pathway, ubiquitin Pro ligase, protein binding-cell
cycle complex; 2.80A {Homo sapiens}
Length = 312
Score = 27.4 bits (60), Expect = 4.2
Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 10/87 (11%)
Query: 117 RLALCLTHWKELWIDDAYWHLLFSLILVVIMILWRPMNNSQRYAFTPLLDPTLDEEDDEE 176
+L +W E D W R + + + L D + ++ E
Sbjct: 27 QLGSTNHYWNETVRDPILWRYFL----------LRDLPSWSSVDWKSLPDLEILKKPISE 76
Query: 177 VEQFINQNMVGMKMRPPPEDSTSPKPR 203
V + + + P +PR
Sbjct: 77 VTDGAFFDYMAVYRMCCPYLIIQNEPR 103
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP,
IST1, coiled coil, cytoplasm, lipoprotein, membrane,
myristate, phosphoprotein; 4.00A {Homo sapiens}
Length = 218
Score = 27.5 bits (60), Expect = 4.2
Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 162 TPLLDPTLDEEDDEEVEQFINQNMVGM--KMRPPPEDSTSPKPRPHPSSTLSPQEDLDRA 219
+ ++EE + E+++ + + G K D+ P + +E+ + A
Sbjct: 146 SMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKVTDALPEPEPPGAMAASEDEEEEEEA 205
>3sxx_A Peroxisomal primary amine oxidase; oxidoreductase, peroxisome; HET:
GOL; 1.27A {Pichia angusta} PDB: 3sx1_A* 3t0u_A 3n9h_A*
3nbj_A* 3nbb_A* 2oqe_C* 2oov_C* 2oqe_A* 2oov_A* 1ekm_A
1a2v_A*
Length = 692
Score = 26.8 bits (58), Expect = 8.1
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 193 PPEDSTSPKPRPHPSSTLSPQEDLDRACQAVMPSLLDSTV 232
S +P HP LS E + A V +
Sbjct: 11 ATAASAAPARPAHPLDPLSTAE-IKAATNTVKSYFAGKKI 49
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.140 0.434
Gapped
Lambda K H
0.267 0.0454 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,975,578
Number of extensions: 233702
Number of successful extensions: 648
Number of sequences better than 10.0: 1
Number of HSP's gapped: 643
Number of HSP's successfully gapped: 21
Length of query: 253
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 162
Effective length of database: 4,160,982
Effective search space: 674079084
Effective search space used: 674079084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.0 bits)