RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3790
         (253 letters)



>d1nh8a2 d.58.5.3 (A:211-284) ATP phosphoribosyltransferase
           (ATP-PRTase, HisG), regulatory C-terminal domain
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 74

 Score = 26.1 bits (58), Expect = 1.1
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 212 PQEDLDRACQAVMPSLLDSTVLPLLDSD 239
           P+  L +A  A+ P L   T+ PL D D
Sbjct: 10  PRSALKKAT-AITPGLESPTIAPLADPD 36


>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory
           subunit HisZ {Thermotoga maritima [TaxId: 2336]}
          Length = 275

 Score = 26.7 bits (58), Expect = 2.5
 Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 155 NSQRYAFTPLLDPTLDEEDDEEVEQFINQNMVGMKMRPPPEDSTSP 200
            + +  F+P   P L++ ++     F+++      +R    D T  
Sbjct: 15  KATKKGFSPFFVPALEKAEEPAGNFFLDRKGNLFSIRE---DFTKT 57


>d1e6yb2 d.58.31.2 (B:2002-2185) Beta chain {Archaeon
          Methanosarcina barkeri [TaxId: 2208]}
          Length = 184

 Score = 25.5 bits (56), Expect = 5.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 41 IRIYDDRSNMLLSSIPL 57
          + IYDDR  +L S++ +
Sbjct: 4  VDIYDDRGKLLESNVDI 20


>d1hbnb2 d.58.31.2 (B:2-188) Beta chain {Archaeon Methanobacterium
          thermoautotrophicum [TaxId: 145262]}
          Length = 187

 Score = 25.5 bits (56), Expect = 5.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 41 IRIYDDRSNMLLSSIPL 57
          + +YDDR N++   +PL
Sbjct: 7  VDLYDDRGNLVEEQVPL 23


>d1e6vb2 d.58.31.2 (B:7-189) Beta chain {Archaeon Methanopyrus
          kandleri [TaxId: 2320]}
          Length = 183

 Score = 25.5 bits (56), Expect = 5.6
 Identities = 6/17 (35%), Positives = 11/17 (64%)

Query: 41 IRIYDDRSNMLLSSIPL 57
          + +YDDR N +   +P+
Sbjct: 3  VDLYDDRGNCVAEEVPI 19


>d1h3da2 d.58.5.3 (A:225-299) ATP phosphoribosyltransferase
           (ATP-PRTase, HisG), regulatory C-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 75

 Score = 24.2 bits (53), Expect = 6.0
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)

Query: 212 PQEDLDRACQAVMPSLLDSTVLPLLDSDE 240
           P E LD    A++P     T+LPL    +
Sbjct: 10  PTERLDEVI-ALLPGAERPTILPLAGDQQ 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 980,416
Number of extensions: 44638
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 15
Length of query: 253
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 170
Effective length of database: 1,268,006
Effective search space: 215561020
Effective search space used: 215561020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.3 bits)