BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3792
(224 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8INX3|TIPIN_DROME Protein TIPIN homolog OS=Drosophila melanogaster GN=CG10336 PE=2
SV=2
Length = 307
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 94/147 (63%), Gaps = 5/147 (3%)
Query: 2 LDDIFLDELVDDPEPMLNEDHHPEARESQDEDEQPPPNPSEPSEDAVRVAPKKKVIRNPQ 61
+DD+F D + DP+ L D E + DED P S+DA V PKK+ +RNP+
Sbjct: 10 VDDLFNDNIPTDPD-QLPSDGEGEKLFADDEDNGVEPG----SQDAQIVEPKKRAVRNPR 64
Query: 62 PKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFVDVL 121
P+L + L GPRGIQ IE YFKD+KFKGKG+E DL+ ++ L+HW +R+YP F DVL
Sbjct: 65 PRLTVETLRGPRGIQTIEDYFKDIKFKGKGYEKTDLDEVLRRLQHWGHRMYPTYTFDDVL 124
Query: 122 KRLEVLGHKRPVMTHIKKIRLGMIEEL 148
+E LG K+P+ H+ + RLG +E++
Sbjct: 125 NNIERLGKKKPLQVHMARYRLGQLEQM 151
>sp|Q0IHI4|TIPIN_XENLA TIMELESS-interacting protein OS=Xenopus laevis GN=tipin PE=2 SV=1
Length = 360
Score = 123 bits (309), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 107/174 (61%), Gaps = 6/174 (3%)
Query: 52 PKKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRL 111
P ++V++ PQPKL+ QRL RG+ + F DVKFKGKGHE DL ++ +E+WA+RL
Sbjct: 62 PARRVVKRPQPKLDGQRLASQRGLPALRHMFDDVKFKGKGHETEDLKILLRQMENWAHRL 121
Query: 112 YPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGM-IEELNQDSNLVLSDTETPAQPQQPTS 170
+PK F D L RLE +G+K+ V T +KKIR+ + I + S V+ TE A P+
Sbjct: 122 FPKLQFEDFLNRLESMGNKKEVQTCLKKIRMDLPIVHDDFLSEEVVVQTEDHAI-DMPSE 180
Query: 171 DDIFND-LLASQPSQHITPVVKEITEAQRERMLRNRQIAEEKRLARLAMEAEQK 223
D F D L PSQ PV +++E +R+ RNR++A E+R+ ++ +AE +
Sbjct: 181 DFSFPDELHVPSPSQ---PVKVDLSEETLQRIERNRRLALERRMEKMQAQAESQ 231
>sp|Q91WA1|TIPIN_MOUSE TIMELESS-interacting protein OS=Mus musculus GN=Tipin PE=1 SV=2
Length = 278
Score = 117 bits (293), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 105/181 (58%), Gaps = 10/181 (5%)
Query: 40 PSEPSEDAVRVAPKKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNT 99
P E S V V PK+ V RN PKL+A RLT RG+ + F KFKGKGHE DL T
Sbjct: 41 PEEGSGSGVPVPPKRTVKRN-LPKLDATRLTSERGLPALRHVFDKTKFKGKGHEAEDLKT 99
Query: 100 IMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGM--IEELNQDSNLVLS 157
++ ++EHWA+RL+PK F D + R+E LG+K+ V T +K+IRL + + E ++N +
Sbjct: 100 LIRHMEHWAHRLFPKLQFEDFIDRVENLGNKKEVQTCLKRIRLDLPIVHEDFVNNNDEVG 159
Query: 158 DTETPAQPQQPTSDDIFNDLLASQPS--QHITPVVKEITEAQRERMLRNRQIAEEKRLAR 215
+ P S F+ L S + + + +TE Q++R+ RN+Q+A E+R A+
Sbjct: 160 EANGP-----DVSATGFDPFLTSSSDSRKFASEPTRSLTEEQQQRIERNKQLALERRQAK 214
Query: 216 L 216
L
Sbjct: 215 L 215
>sp|Q9BVW5|TIPIN_HUMAN TIMELESS-interacting protein OS=Homo sapiens GN=TIPIN PE=1 SV=2
Length = 301
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 108/183 (59%), Gaps = 11/183 (6%)
Query: 41 SEPSEDA-----VRVAPKKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELA 95
+EP E++ VRV PK+ V RN PKL+AQRL RG+ + F KFKGKGHE
Sbjct: 40 TEPDEESGNGAPVRVPPKRTVKRNI-PKLDAQRLISERGLPALRHVFDKAKFKGKGHEAE 98
Query: 96 DLNTIMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGMIEELNQDSNLV 155
DL ++ ++EHWA+RL+PK F D + R+E LG K+ V T +K+IRL + L++D V
Sbjct: 99 DLKMLIRHMEHWAHRLFPKLQFEDFIDRVEYLGSKKEVQTCLKRIRLDL-PILHED--FV 155
Query: 156 LSDTETPAQPQQPTSDDIFNDLLA--SQPSQHITPVVKEITEAQRERMLRNRQIAEEKRL 213
++ E + + + L S+ + + + +TE Q++R+ RN+Q+A E+R
Sbjct: 156 SNNDEVAENNEHDVTSTELDPFLTNLSESEMFASELSRSLTEEQQQRIERNKQLALERRQ 215
Query: 214 ARL 216
A+L
Sbjct: 216 AKL 218
>sp|Q4QR88|TIPIN_RAT TIMELESS-interacting protein OS=Rattus norvegicus GN=Tipin PE=2
SV=1
Length = 276
Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 108/181 (59%), Gaps = 10/181 (5%)
Query: 40 PSEPSEDAVRVAPKKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNT 99
P E S V V PK+ V RN PKL+A RLT RG+ + F KFKGKGHE DL T
Sbjct: 41 PDEGSGAPVPVPPKRIVKRNI-PKLDATRLTSERGLPALRHVFDKTKFKGKGHEAEDLKT 99
Query: 100 IMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGM---IEELNQDSNLVL 156
++ ++EHWA+RL+PK F D + R+E LG+K+ V T +K+IRL + E+ +++ V
Sbjct: 100 LIRHMEHWAHRLFPKLQFEDFIDRVENLGNKKEVQTCLKRIRLDLPIVHEDFVNNNDEV- 158
Query: 157 SDTETPAQPQQPTSDDIFNDLLASQPSQHI-TPVVKEITEAQRERMLRNRQIAEEKRLAR 215
ET + T D F + +S S+ + + +TE Q++R+ +N+Q+A E+R A+
Sbjct: 159 --EETNSLDAAATGFDAF--VTSSSDSKRFASEASRNLTEEQQQRIEKNKQLALERRQAK 214
Query: 216 L 216
L
Sbjct: 215 L 215
>sp|Q3ZCC4|TIPIN_BOVIN TIMELESS-interacting protein OS=Bos taurus GN=TIPIN PE=2 SV=1
Length = 290
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 109/184 (59%), Gaps = 13/184 (7%)
Query: 41 SEPSEDAVRVAP-----KKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELA 95
+EP E++ R AP K+ V RN PKLNA+RL RG+ + F+ KFKGKGHE
Sbjct: 40 AEPEEESGRGAPVPVPPKRTVKRNI-PKLNAERLISERGLPALRHVFEKAKFKGKGHEAE 98
Query: 96 DLNTIMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGM-IEELNQDSNL 154
DL T++ ++EHWA+RL+PK F D + R+E LG+K+ V T +K+IRL + I L++D
Sbjct: 99 DLKTLIRHMEHWAHRLFPKLQFEDFIDRVECLGNKKEVQTCLKRIRLDLPI--LHED--F 154
Query: 155 VLSDTETPAQPQQPTSDDIFNDLLASQPS--QHITPVVKEITEAQRERMLRNRQIAEEKR 212
V ++ E + + L + + + + +TE +++R+ RN+Q+A E+R
Sbjct: 155 VSNNDEVEENNGHDVTATELDHFLTNSYGSVEFASESSRSLTEEEQQRIERNKQLALERR 214
Query: 213 LARL 216
A+L
Sbjct: 215 QAKL 218
>sp|Q6DBR4|TIPIN_DANRE TIMELESS-interacting protein OS=Danio rerio GN=tipin PE=2 SV=1
Length = 294
Score = 110 bits (276), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 100/163 (61%), Gaps = 6/163 (3%)
Query: 53 KKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLY 112
K++ ++ P+PKL+A RL +G+ + F+DVKFKGKGHE +L +M +E+WA+RLY
Sbjct: 63 KRRTVKRPRPKLDANRLISEKGLPALRTLFEDVKFKGKGHETENLKLLMLKMENWAHRLY 122
Query: 113 PKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGMIEELNQDSNLVLSDTETPAQPQQPTSDD 172
PK F + + ++E LG K+ V T +K+IRL M ++D ++ + P + P+ D
Sbjct: 123 PKMQFEEFIDKVENLGGKKEVQTCLKRIRLDM-PITHEDYVAEEAEIQVPEE-SVPSGDG 180
Query: 173 IFNDLLASQPSQHITPVVKEITEAQRERMLRNRQIAEEKRLAR 215
F + P H TP +TE Q++R+ N+++A E+RLA+
Sbjct: 181 GFPE----DPFIHSTPAPASLTEEQQQRIELNKRLALERRLAK 219
>sp|Q5F416|TIPIN_CHICK TIMELESS-interacting protein OS=Gallus gallus GN=TIPIN PE=2 SV=1
Length = 283
Score = 107 bits (268), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 108/194 (55%), Gaps = 20/194 (10%)
Query: 38 PNPSEPSEDAVRVAPKKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADL 97
P+ ++ SE + +K ++ PKL+A RL RG+ + F +VKFKGKGHE DL
Sbjct: 48 PDGNQQSETKDSSSAARKAVKRSIPKLDANRLVSERGLPALRHMFDNVKFKGKGHEAEDL 107
Query: 98 NTIMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGMIEELNQDSNLVLS 157
T++ ++EHWA+RL+PK F D + R+E LG+K+ V T +K+IRL + +L
Sbjct: 108 KTLLRHMEHWAHRLFPKLQFDDFIDRVESLGNKKEVQTCLKRIRLDLP---------ILH 158
Query: 158 DTETPAQPQQPTSDDIFNDLLASQPSQHITPVVKE--------ITEAQRERMLRNRQIAE 209
+ T + S+ + +A++ + V E +TE Q++R+ RNRQ+A
Sbjct: 159 EDFTANEGGGGESNGLD---MATEEVHSFSGNVGELDSLPGTTLTEEQQQRIKRNRQLAL 215
Query: 210 EKRLARLAMEAEQK 223
E+R A++ ++ +
Sbjct: 216 ERRQAKMQCNSQSQ 229
>sp|Q2H3R6|CSM3_CHAGB Chromosome segregation in meiosis protein 3 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=CSM3 PE=3 SV=1
Length = 431
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 35/162 (21%)
Query: 54 KKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYP 113
KK R P+ KL+ RL +GI + + +K KGKGHE +D ++S + W + L+P
Sbjct: 64 KKKPRAPRVKLDETRLLSDKGIPKLRKMAPRLKLKGKGHEFSDAARLLSFYQEWLDDLFP 123
Query: 114 KSNFVDVLKRLEVLGHKRPVMTHIKKIRLGMIEEL--------NQDSNLVLSDTETPAQP 165
K+ F+D L +E GHK T ++ R I+EL +++ N + P QP
Sbjct: 124 KATFLDALAMVEKTGHK----TTMRSARQKWIDELKPRAAIEEDEEDNRIHRGAVGPQQP 179
Query: 166 ------------------QQPTSDDIFNDLLASQPSQHITPV 189
+ PT+DD+F D L + TPV
Sbjct: 180 PKVASIFETTAKAAGERAKTPTTDDLFGDDL-----YNATPV 216
>sp|Q9TXI0|TIPIN_CAEEL Protein TIPIN homolog OS=Caenorhabditis elegans GN=F23C8.9 PE=3
SV=1
Length = 233
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Query: 28 ESQDEDEQPPPNPSEPSEDAVRVAPKKKVIR----------NPQPKLNAQRLTGPRGIQC 77
E+ + D +P P E ED ++V+ NP+ LN + LTGP+GI
Sbjct: 9 ENDELDREPSPMGDEAIEDNSGEGGTRRVVEPKLLRTKRLANPRLALNERILTGPKGISA 68
Query: 78 IEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMTHI 137
+ + KD K K A+L +M +W + ++PK DVL R+E LG +R V +
Sbjct: 69 LRETLKDFKPNPKDDPYANLEKLMKKYAYWGHLMFPKMKTEDVLNRVETLGTRRQVKVFM 128
Query: 138 KKIRLGMIEELNQDS 152
K RLG E +DS
Sbjct: 129 IKHRLG---ETGEDS 140
>sp|Q7SHE8|CSM3_NEUCR Chromosome segregation in meiosis protein 3 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=csm-3 PE=3 SV=1
Length = 409
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 55 KVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPK 114
K R P+ KL+ RL +GI + + +K KGKGHE +D ++S + W + L+PK
Sbjct: 61 KKARVPRVKLDDARLLSDKGIPKLRKTASKLKLKGKGHEFSDAARLLSFYQEWLDDLFPK 120
Query: 115 SNFVDVLKRLEVLGHKRPVMTHIKKIRLGMIEE 147
+ FVD L E GHK T ++ RL I E
Sbjct: 121 ATFVDALAMCEKAGHK----TTLRNARLKWIAE 149
>sp|Q61XH2|TIPIN_CAEBR Protein TIPIN homolog OS=Caenorhabditis briggsae GN=CBG03985 PE=3
SV=1
Length = 239
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 33 DEQPPPNPSEPSEDAVRVAPKKKVIR----------NPQPKLNAQRLTGPRGIQCIEQYF 82
D +P P E ED +++I NP+ LN + LTGP+GI + + F
Sbjct: 14 DREPSPFGEEAIEDNTGEEGSRRIIEPKLLRTKKLTNPRLALNEKTLTGPKGITALREAF 73
Query: 83 KDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRL 142
++ K +L +M +W + ++PK DVL R+E LG +R V +I K RL
Sbjct: 74 QNFNPNPKDDPYKNLEKMMKKYAYWGHLMFPKMKTEDVLNRVETLGTRRQVKLYIMKQRL 133
Query: 143 G 143
G
Sbjct: 134 G 134
>sp|A4RCW0|CSM3_MAGO7 Chromosome segregation in meiosis protein 3 OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=CSM3 PE=3
SV=1
Length = 357
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Query: 48 VRVAPKKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHW 107
V VA + +V P+ KL+ RL +GI + + ++ KGKGHE +D ++S + W
Sbjct: 60 VSVAKRARV---PRVKLDETRLLSDKGIPALRKRAGTLRLKGKGHEFSDAARLLSFYQLW 116
Query: 108 ANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGMIEEL 148
+ L+PK+ F+D L +E GHK T + K R I +L
Sbjct: 117 LDDLFPKAKFLDALAMVEKAGHK----TTMHKARTDWINDL 153
>sp|Q0UJ25|CSM3_PHANO Chromosome segregation in meiosis protein 3 OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
GN=CSM3 PE=3 SV=1
Length = 244
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 58 RNPQPKLNAQRLTGPRGIQCIEQYFKD-VKFKGKGHELADLNTIMSNLEHWANRLYPKSN 116
R P PKL+ RL GI + + KD ++FKGKGHE D+ +++ + W + LYP++
Sbjct: 63 RIPIPKLDDNRLLSDPGIPRLRRISKDRLRFKGKGHEYGDIARMLNMYQLWLDDLYPRAK 122
Query: 117 FVDVLKRLEVLGHKR 131
F D L +E +GH +
Sbjct: 123 FADALTIIEKVGHTK 137
>sp|Q0CU66|CSM3_ASPTN Chromosome segregation in meiosis protein 3 OS=Aspergillus terreus
(strain NIH 2624 / FGSC A1156) GN=csm3 PE=3 SV=2
Length = 302
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 38 PNPSEPSEDAVRVAPKKKVIRNPQP--KLNAQRLTGPRGIQCIEQYFKD-VKFKGKGHEL 94
P SE + + + KV R QP KL+ RL GI + + K +KFKGKGHE
Sbjct: 43 PQTSESRGLGLGLDDEVKVTRKRQPIAKLDEGRLLSQAGIPKLRRSAKQKLKFKGKGHEF 102
Query: 95 ADLNTIMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMT 135
+D +++ + W + L+P++ F D L +E LGH + + T
Sbjct: 103 SDAARLLNFYQLWLDDLFPRAKFTDGLAMIEKLGHSKRIQT 143
>sp|O14350|SWI3_SCHPO Swi1-interacting protein swi3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=swi3 PE=1 SV=2
Length = 181
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 57/130 (43%), Gaps = 17/130 (13%)
Query: 58 RNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNF 117
R K + +RL GI + + + VK KGKGHE DL ++ W + LYP++ F
Sbjct: 46 RKRLAKFDEERLISENGIPKLRKMMRKVKLKGKGHEAKDLKQLLGMYHIWTHELYPRATF 105
Query: 118 VDVLKRLEVLGHKRPVMTHIKKIRLGMIEEL----NQDSNLVLSD--------TETPAQP 165
D + L+ LG R V K R G I E+ DSN L T P
Sbjct: 106 DDSISYLKTLGKHRSV----KVRRRGWINEIAVENGSDSNASLFTGPSSNSLVNLTSGDP 161
Query: 166 Q-QPTSDDIF 174
Q T+DD F
Sbjct: 162 YVQDTADDAF 171
>sp|A1C8Y9|CSM3_ASPCL Chromosome segregation in meiosis protein 3 OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1) GN=csm3 PE=3 SV=1
Length = 267
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 58 RNPQPKLNAQRLTGPRGIQCIEQYFK-DVKFKGKGHELADLNTIMSNLEHWANRLYPKSN 116
R P KL+ +RL GI + + K +KF+G+GHE +D +++ + W + L+P++
Sbjct: 69 RQPIAKLDERRLLSQPGIPKLRRTAKAKLKFRGRGHEFSDAARLLNFYQLWLDNLFPRAK 128
Query: 117 FVDVLKRLEVLGHKRPVMTHIKKIRLGMIEE 147
F D L +E LGH + + T IR IEE
Sbjct: 129 FADGLAMIERLGHSKRLQT----IRREWIEE 155
>sp|A1D9E6|CSM3_NEOFI Chromosome segregation in meiosis protein 3 OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=csm3 PE=3 SV=1
Length = 270
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 58 RNPQPKLNAQRLTGPRGIQCIEQYFKD-VKFKGKGHELADLNTIMSNLEHWANRLYPKSN 116
R P KL+ RL GI + + K ++FKGKGHE +D +++ + W + L+P++
Sbjct: 69 RQPVAKLDESRLLSQPGIPKLRRTAKKKLRFKGKGHEFSDAARLLNFYQLWLDDLFPRAK 128
Query: 117 FVDVLKRLEVLGHKR 131
F D L +E LGH +
Sbjct: 129 FADGLAIIERLGHSK 143
>sp|Q1DME8|CSM3_COCIM Chromosome segregation in meiosis protein 3 OS=Coccidioides immitis
(strain RS) GN=CSM3 PE=3 SV=2
Length = 337
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 58 RNPQPKLNAQRLTGPRGIQCIEQYFKD-VKFKGKGHELADLNTIMSNLEHWANRLYPKSN 116
R P KL+ RL GI + + K +KFKGK HE +D+ +++ + W + LYP++
Sbjct: 60 RAPPVKLDENRLLSQAGIPKLRRSAKTKLKFKGKRHEFSDVARLLNFYQLWLDDLYPRAK 119
Query: 117 FVDVLKRLEVLGH-KRPVMTHIKKIRLGMIEELNQDSNLVLSDTETPAQPQQPTSD 171
F D L +E LGH KR + + I G DSN+ D + + + T+D
Sbjct: 120 FADGLSIIEKLGHTKRMQVMRKEWIDEGKPGRNLYDSNVTYLDPNSDNRGDKDTAD 175
>sp|A4DA84|CSM3_ASPFU Chromosome segregation in meiosis protein 3 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=csm3 PE=3 SV=1
Length = 270
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 8/161 (4%)
Query: 58 RNPQPKLNAQRLTGPRGIQCIEQYFKD-VKFKGKGHELADLNTIMSNLEHWANRLYPKSN 116
R P KL+ RL GI + + K ++FKGKGHE +D +++ + W + L+P++
Sbjct: 69 RQPVAKLDESRLLSQPGIPKLRRTAKKKLRFKGKGHEFSDAARLLNFYQLWLDDLFPRAK 128
Query: 117 FVDVLKRLEVLGHKRPVMTHIKKIRLGMIEELNQDSNLVLSDTETPAQPQQPTSDD---I 173
F D L +E LGH + + K+ + EE +D++ +D ++ SDD
Sbjct: 129 FADGLAIIERLGHSKRLQAMRKEW---IDEEKPKDASENHNDVLKASESSGSQSDDPVVA 185
Query: 174 FNDLLASQPSQHITPVVKEIT-EAQRERMLRNRQIAEEKRL 213
F L + + + + T +A+R R+ N + +++L
Sbjct: 186 FGGLNMADTKRSKGDIAGDYTSDAERMRVEVNLNPSGQRKL 226
>sp|Q6C656|CSM3_YARLI Chromosome segregation in meiosis protein 3 OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=CSM3 PE=3 SV=1
Length = 368
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 63 KLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFVDVLK 122
KL+ R+ +G+ ++ V KG GHE+ DL ++ + W++ L+PK F K
Sbjct: 49 KLDDTRMMDDKGLPALKHLCTKVNLKGNGHEVGDLGRLLDMYQMWSHDLFPKGQF----K 104
Query: 123 RLEVLGHKRPVMTHIKKIRLGMIEE 147
L L K ++ +RL I+E
Sbjct: 105 SLYPLTSKAGRTATVRGLRLAWIDE 129
>sp|Q04659|CSM3_YEAST Chromosome segregation in meiosis protein 3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CSM3 PE=1
SV=1
Length = 317
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 58 RNPQPKLNAQRLTGPRGI-QCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSN 116
R PQ KL A++L +G+ ++ K ++ K + +L+ I+ + WA+ L+PK+
Sbjct: 48 RRPQVKLTAEKLLSDKGLPYVLKNAHKRIRISSKKNSYDNLSNIIQFYQLWAHELFPKAK 107
Query: 117 FVDVLKRLEVLGHKRPVM 134
F D +K + +G PV+
Sbjct: 108 FKDFMKICQTVGKTDPVL 125
>sp|Q6FU57|CSM3_CANGA Chromosome segregation in meiosis protein 3 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=CSM3 PE=3 SV=1
Length = 309
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 57 IRNPQPKLNAQRLTGPRGIQCIEQYF-KDVKFKGKGHELADLNTIMSNLEHWANRLYPKS 115
+R PQ KL A+RL P G+ + ++ K V+ +L I+ + WA+ L+PK+
Sbjct: 47 VRRPQVKLTAERLLSPNGLPYVMKHAPKRVRISKSRSTYKNLEHIIQFYQLWAHELFPKA 106
Query: 116 NFVDVLKRLEVLGHKRPVMTHIKKIRLGMIEELNQDSNLVLSDTETPAQPQQPTS 170
F D ++ LG + + + L + NQ + SD + PA QP +
Sbjct: 107 KFKDFVRLCNSLGKTDADLRNY-RTELFRADMENQFGDGYRSDKQNPANNSQPVT 160
>sp|A3LW29|CSM3_PICST Chromosome segregation in meiosis protein 3 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 /
NRRL Y-11545) GN=CSM3 PE=3 SV=2
Length = 352
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 92 HELADLNTIMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRP 132
HE +L++++ + W + ++PK+NF D + L +LG K P
Sbjct: 118 HEYDNLSSVLQFYQLWCHGMFPKANFKDCVHLLRLLGAKSP 158
>sp|Q59X26|CSM3_CANAL Chromosome segregation in meiosis protein 3 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=CSM3 PE=3 SV=1
Length = 316
Score = 38.5 bits (88), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 92 HELADLNTIMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVM-----------THIKKI 140
HE +L++++ + W + L+PK+ F D + + LG + P + H K+
Sbjct: 108 HEYENLSSVLQFYQLWCHGLFPKATFKDCIHLIRALGARSPQLRLYRRELIAAELHKLKV 167
Query: 141 RLGMIEELNQDS 152
G+I + NQD+
Sbjct: 168 AKGIIADENQDA 179
>sp|Q6CIH2|CSM3_KLULA Chromosome segregation in meiosis protein 3 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=CSM3 PE=3 SV=1
Length = 299
Score = 37.4 bits (85), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 36 PPPNPSEPSEDAVRVAPKKKVI----RNPQPKLNAQRLTGPRGI-QCIEQYFKDVKFKGK 90
P N +PS + +I R P+ KL A++L +G+ +E K +
Sbjct: 31 PTVNGLDPSMTSTTDGQDPTLISTNTRKPRVKLTAEKLLSTKGLPYVMEHAPKSCRISKH 90
Query: 91 GHELADLNTIMSNLEHWANRLYPKSNFVDVLKRLEVLG 128
+L + + WA+ LYPK+ F D E LG
Sbjct: 91 KTAYDNLTNFLQFYQLWAHNLYPKAKFKDFTSLCESLG 128
>sp|A5DWY0|CSM3_LODEL Chromosome segregation in meiosis protein 3 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=CSM3 PE=3 SV=1
Length = 350
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 73 RGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFVDVLKRLEVLGHK 130
R +Q I +K + HE+ L +I+ + W + ++PK+NF D + LGH+
Sbjct: 94 RKLQSIHHSYKTPRQLKYDHEVETLGSILHFYQLWCHGMFPKANFKDCAYLVRNLGHR 151
>sp|Q75DC6|CSM3_ASHGO Chromosome segregation in meiosis protein 3 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=CSM3 PE=3 SV=1
Length = 240
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 37 PPNPSEPSE---DAVRVAPKKKVIRNPQPKLNAQRLTGPRGI-QCIEQYFKDVKFKGKGH 92
P +P+ +E A++V + V+ KL+ +RL +G+ ++ K + +
Sbjct: 20 PADPATLTEIDPSAIQVRKTRTVV-----KLDCERLVSKKGLPYLLKNAPKHARISKRRD 74
Query: 93 ELADLNTIMSNLEHWANRLYPKSNFVDVLKRLEVLG 128
+L ++ + WA+ LYPK+ F D + + LG
Sbjct: 75 TYGNLCHVLQFYQLWAHELYPKAKFKDFVALCDRLG 110
>sp|Q2WF59|ZER1_CAEEL Zyg eleven-related protein 1 OS=Caenorhabditis elegans GN=zer-1
PE=1 SV=1
Length = 895
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 103 NLEHWANR-----LYPKSNFVDVLKRLEV--LGHKRPVMTHIKKIRLGMIEELNQDSNL- 154
+L +W+ L P SN + L +V L H P + H+ ++R+ + + N+DS L
Sbjct: 285 DLSYWSKTDDMRCLQPLSNTLTCLILYDVPDLYHAVPNICHMTELRILDVSQSNRDSGLY 344
Query: 155 ---VLSDTETPAQPQQPTSDDIFNDLLASQPSQHITP 188
V + + + T DI + LA+QPS H P
Sbjct: 345 PHPVTTLNKLIVSLKYLTHLDISSTNLATQPSSHDNP 381
>sp|Q1GXD6|IF2_METFK Translation initiation factor IF-2 OS=Methylobacillus flagellatus
(strain KT / ATCC 51484 / DSM 6875) GN=infB PE=3 SV=1
Length = 907
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 13 DPEPMLNEDHHPEARESQDEDE-QPPPNPSEPSEDAVRVAPKKKVIRNPQPKLNAQRLTG 71
+PEP++ P A E + E E +P P+EP V VA +K + +PKL A+ L G
Sbjct: 133 EPEPVVEAVPEPVAVEQELESEPEPTVAPAEPEAGEVAVAVDEKPTADARPKLTARELLG 192
>sp|Q9Z8K0|DPO3B_CHLPN DNA polymerase III subunit beta OS=Chlamydia pneumoniae GN=dnaN
PE=3 SV=2
Length = 366
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 132 PVMTHIKKIRLGMIEELNQDSNLVLSDTETPAQPQQPTSDDIFNDLLASQPSQHITPVVK 191
PV+TH+ +IE N + LV + T+ + T ++ S PS+ +VK
Sbjct: 28 PVLTHV------LIETYNDE--LVFTATDLTVSTRCVTKAKVYEKGAISIPSKRFFQLVK 79
Query: 192 EITEAQRE 199
E+TEA E
Sbjct: 80 ELTEANLE 87
>sp|Q3TEI4|CO039_MOUSE Uncharacterized protein C15orf39 homolog OS=Mus musculus PE=1 SV=2
Length = 1023
Score = 30.8 bits (68), Expect = 7.1, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 12 DDPEPMLNEDHHPEARESQD---EDEQPPPNPSEPSEDAV-RVAPKKKVIRNPQPKLNAQ 67
D P P + HP A+E Q +D +PP +P P D V +AP + + P+ A+
Sbjct: 464 DSPVPRTSPALHPCAKERQSVPQKDARPPSSPPMPVIDNVFSLAPYRDYLDVQTPEPRAE 523
Query: 68 RLTGP 72
R + P
Sbjct: 524 RDSAP 528
>sp|A8AZU4|MUTS_STRGC DNA mismatch repair protein MutS OS=Streptococcus gordonii (strain
Challis / ATCC 35105 / CH1 / DL1 / V288) GN=mutS PE=3
SV=1
Length = 847
Score = 30.8 bits (68), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 6/119 (5%)
Query: 47 AVRVAPKKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKD-----VKFKGKGHELADLNTIM 101
A+R A ++ +I + G Q I +Y D F HEL DL++ +
Sbjct: 668 AIRQASERSLILFDELGRGTATYDGMALAQAIIEYIHDRTKAKTLFATHYHELTDLSSSL 727
Query: 102 SNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGMIEELNQDSNLVLSDTE 160
+ LE+ K V L ++E + H+ KI G+ +L + ++ +L+D E
Sbjct: 728 TRLENVHVATLEKDGQVTFLHKIEAGPADKSYGIHVAKIA-GLPTDLLRRADAILTDLE 785
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,863,654
Number of Sequences: 539616
Number of extensions: 4010446
Number of successful extensions: 16281
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 16036
Number of HSP's gapped (non-prelim): 270
length of query: 224
length of database: 191,569,459
effective HSP length: 113
effective length of query: 111
effective length of database: 130,592,851
effective search space: 14495806461
effective search space used: 14495806461
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)