Query psy3792
Match_columns 224
No_of_seqs 138 out of 196
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 17:32:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3792.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3792hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j26_A Immature colon carcinom 77.7 2.7 9.3E-05 32.7 4.5 33 189-221 52-108 (112)
2 3sjd_D Golgi to ER traffic pro 67.0 6.1 0.00021 26.6 3.5 26 188-219 9-34 (46)
3 3si5_X Protein CASC5; BUBR1-bl 37.5 15 0.00051 21.6 1.4 12 114-125 10-21 (24)
4 1irz_A ARR10-B; helix-turn-hel 33.6 35 0.0012 24.1 3.2 14 131-144 47-60 (64)
5 2mys_B Myosin; muscle protein, 27.0 64 0.0022 23.5 3.8 59 69-127 18-87 (166)
6 3dtp_E RLC, myosin regulatory 26.2 2.2E+02 0.0074 21.7 8.8 63 65-127 46-118 (196)
7 3zs9_C Golgi to ER traffic pro 25.3 44 0.0015 21.6 2.2 23 191-219 2-24 (38)
8 3lay_A Zinc resistance-associa 25.0 80 0.0028 26.0 4.4 19 191-209 66-84 (175)
9 2y39_A Nickel and cobalt resis 21.2 1.1E+02 0.0038 24.0 4.3 24 192-215 20-43 (118)
10 2jva_A Peptidyl-tRNA hydrolase 20.6 80 0.0027 24.2 3.3 20 202-221 81-100 (108)
No 1
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=77.69 E-value=2.7 Score=32.74 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=29.0
Q ss_pred CchhhhHHHHHHH------------------------HHhHHHHHHHHHHHHHHHHh
Q psy3792 189 VVKEITEAQRERM------------------------LRNRQIAEEKRLARLAMEAE 221 (224)
Q Consensus 189 ~~~~LteEQ~~Ri------------------------e~Nr~~AlErR~ar~~~~~~ 221 (224)
++..|++++++|+ ++||..|++|.++++.+...
T Consensus 52 t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~~Al~rL~~~l~~a~~ 108 (112)
T 1j26_A 52 SADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAEASG 108 (112)
T ss_dssp GCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccCCHHHHHHHHHhhccccccCCeEEEEECCccCHHHHHHHHHHHHHHHHHHhhc
Confidence 3468999999999 99999999999999987653
No 2
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=66.99 E-value=6.1 Score=26.65 Aligned_cols=26 Identities=38% Similarity=0.689 Sum_probs=15.6
Q ss_pred CCchhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy3792 188 PVVKEITEAQRERMLRNRQIAEEKRLARLAME 219 (224)
Q Consensus 188 ~~~~~LteEQ~~Rie~Nr~~AlErR~ar~~~~ 219 (224)
|-.++|+++.++||-+ |||+||+.+.
T Consensus 9 ~~~~~lsa~EkaRLrR------ERR~aKi~~G 34 (46)
T 3sjd_D 9 PMGSELTEAEKRRLLR------ERRQKKFSNG 34 (46)
T ss_dssp ------CHHHHHHHHH------HHHHHHHHHH
T ss_pred CccccccHHHHHHHHH------HHHHHHHHcc
Confidence 4567799988888765 6778887766
No 3
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=37.46 E-value=15 Score=21.60 Aligned_cols=12 Identities=50% Similarity=0.808 Sum_probs=10.0
Q ss_pred CCCHHHHHHHHH
Q psy3792 114 KSNFVDVLKRLE 125 (224)
Q Consensus 114 K~~F~Dfi~rvE 125 (224)
|.+|.|||.|+.
T Consensus 10 KinfndFIKRLK 21 (24)
T 3si5_X 10 KIDFNDFIKRLK 21 (26)
T ss_pred hccHHHHHHHHh
Confidence 578999999874
No 4
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=33.62 E-value=35 Score=24.10 Aligned_cols=14 Identities=29% Similarity=0.667 Sum_probs=10.0
Q ss_pred chHHHHHHHHHhhh
Q psy3792 131 RPVMTHIKKIRLGM 144 (224)
Q Consensus 131 k~Vq~~Lk~~R~~l 144 (224)
..|+++|.+||..+
T Consensus 47 ~~VkSHLQKYR~~l 60 (64)
T 1irz_A 47 ENVASHLQKFRVAL 60 (64)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45777788888755
No 5
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=27.03 E-value=64 Score=23.51 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=35.0
Q ss_pred ccCCCChHHHHHhcccccccCCCC-hhhhHHHHHHHHHH------HHhhc----CCCCCHHHHHHHHHHh
Q psy3792 69 LTGPRGIQCIEQYFKDVKFKGKGH-ELADLNTIMSNLEH------WANRL----YPKSNFVDVLKRLEVL 127 (224)
Q Consensus 69 Llsp~GLp~L~k~fk~~kfKGKGh-E~~DL~~LL~~Yq~------WaH~L----yPK~~F~Dfi~rvEkL 127 (224)
-+++.-+..|+..|..+--.|.|. ..++|..+|..+-. ....| =-+.+|.+|+..+..+
T Consensus 18 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~dg~i~~~eF~~~~~~~ 87 (166)
T 2mys_B 18 MFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEASGPINFTVFLTMFGEK 87 (166)
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHCCCCcCHHHHHHHHHHH
Confidence 344555667888888777666663 35556555544311 11111 2467888888887765
No 6
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=26.22 E-value=2.2e+02 Score=21.71 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=39.0
Q ss_pred ccccccCCCChHHHHHhcccccccCCCC-hhhhHHHHHHHH---------HHHHhhcCCCCCHHHHHHHHHHh
Q psy3792 65 NAQRLTGPRGIQCIEQYFKDVKFKGKGH-ELADLNTIMSNL---------EHWANRLYPKSNFVDVLKRLEVL 127 (224)
Q Consensus 65 d~erLlsp~GLp~L~k~fk~~kfKGKGh-E~~DL~~LL~~Y---------q~WaH~LyPK~~F~Dfi~rvEkL 127 (224)
..-.-+++.=+..|+..|..|--.|.|. ..++|..+|..+ ......+=-..+|.+|+..+..+
T Consensus 46 ~~~~~ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~l~~~~~g~i~~~eF~~~~~~~ 118 (196)
T 3dtp_E 46 NVFAMFTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAEAPGPINFTMFLTIFGDR 118 (196)
T ss_dssp CSSCSSCTTTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHTTSCCCCHHHHHHHHTTSSSCCBHHHHHHHHHHC
T ss_pred hhhhhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence 3345567777888999998887666663 345566555431 11111123467888888888764
No 7
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=25.31 E-value=44 Score=21.64 Aligned_cols=23 Identities=39% Similarity=0.693 Sum_probs=14.9
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy3792 191 KEITEAQRERMLRNRQIAEEKRLARLAME 219 (224)
Q Consensus 191 ~~LteEQ~~Rie~Nr~~AlErR~ar~~~~ 219 (224)
++||++-++||-+ |||+||+.+.
T Consensus 2 sels~~ekaRlrR------ERR~aKi~~G 24 (38)
T 3zs9_C 2 SELTEAEKRRLLR------ERRQKKFSNG 24 (38)
T ss_dssp --CCHHHHHHHHH------HHHHHHHTTT
T ss_pred cccCHHHHHHHHH------HHHHHHHHcc
Confidence 4689988888876 5566665543
No 8
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=24.97 E-value=80 Score=26.03 Aligned_cols=19 Identities=11% Similarity=-0.053 Sum_probs=13.1
Q ss_pred hhhhHHHHHHHHHhHHHHH
Q psy3792 191 KEITEAQRERMLRNRQIAE 209 (224)
Q Consensus 191 ~~LteEQ~~Rie~Nr~~Al 209 (224)
-.||+||++.|..=++...
T Consensus 66 LnLT~EQq~ql~~I~~e~r 84 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYY 84 (175)
T ss_dssp --CCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 4699999998876655544
No 9
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=21.25 E-value=1.1e+02 Score=24.04 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHH
Q psy3792 192 EITEAQRERMLRNRQIAEEKRLAR 215 (224)
Q Consensus 192 ~LteEQ~~Rie~Nr~~AlErR~ar 215 (224)
.||.+|+++|+.=+.....+|.+.
T Consensus 20 ~Lt~~Q~~~leaie~~fa~~r~~l 43 (118)
T 2y39_A 20 PLDANEREILELKEDAFAQRRREI 43 (118)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999998766665555444
No 10
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=20.62 E-value=80 Score=24.18 Aligned_cols=20 Identities=20% Similarity=0.011 Sum_probs=17.3
Q ss_pred HHhHHHHHHHHHHHHHHHHh
Q psy3792 202 LRNRQIAEEKRLARLAMEAE 221 (224)
Q Consensus 202 e~Nr~~AlErR~ar~~~~~~ 221 (224)
++||..|++|.++++.+++.
T Consensus 81 ~~Nr~~Al~rL~~~l~~a~~ 100 (108)
T 2jva_A 81 EQNRADALLRLSELIVNAAK 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 38999999999999988754
Done!