Query psy3792
Match_columns 224
No_of_seqs 138 out of 196
Neff 4.2
Searched_HMMs 13730
Date Fri Aug 16 17:32:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3792.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3792hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1irza_ a.4.1.11 (A:) Arr10-B 40.3 14 0.001 24.4 3.7 14 132-145 48-61 (64)
2 d1y9ia_ a.195.1.1 (A:) Low tem 38.1 22 0.0016 27.4 5.1 57 88-147 14-71 (159)
3 d1tlqa_ a.195.1.1 (A:) Hypothe 28.3 35 0.0025 26.3 4.7 57 88-147 15-72 (161)
4 d1rfza_ a.195.1.1 (A:) YutG ho 26.2 41 0.003 26.0 4.8 58 87-147 20-78 (164)
5 d1a8oa_ a.28.3.1 (A:) HIV caps 22.2 22 0.0016 23.4 2.2 15 113-127 7-21 (70)
6 d2eiaa1 a.28.3.1 (A:148-222) E 19.2 28 0.002 23.2 2.2 15 113-127 10-24 (75)
7 d2q02a1 c.1.15.4 (A:1-271) Put 15.9 41 0.003 25.4 2.8 23 109-131 12-34 (271)
8 d1ku1a_ a.118.3.1 (A:) ARF gua 15.5 1.2E+02 0.009 23.3 5.7 38 72-109 70-123 (211)
9 d1qrjb1 a.28.3.1 (B:131-214) H 15.3 38 0.0028 23.2 2.1 15 112-126 9-23 (84)
10 d1k77a_ c.1.15.5 (A:) Hypothet 14.2 35 0.0025 24.8 1.8 20 111-130 11-30 (260)
No 1
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=40.27 E-value=14 Score=24.36 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=10.2
Q ss_pred hHHHHHHHHHhhhh
Q psy3792 132 PVMTHIKKIRLGMI 145 (224)
Q Consensus 132 ~Vq~~Lk~~R~~l~ 145 (224)
.|++++.+||+.+-
T Consensus 48 qV~SHlQKYrl~l~ 61 (64)
T d1irza_ 48 NVASHLQKFRVALK 61 (64)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66778888887653
No 2
>d1y9ia_ a.195.1.1 (A:) Low temperature requirement C protein, LtrC {Listeria monocytogenes [TaxId: 1639]}
Probab=38.14 E-value=22 Score=27.41 Aligned_cols=57 Identities=21% Similarity=0.317 Sum_probs=42.9
Q ss_pred cCCCChhhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCchHHHH-HHHHHhhhhhh
Q psy3792 88 KGKGHELADLNTIMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMTH-IKKIRLGMIEE 147 (224)
Q Consensus 88 KGKGhE~~DL~~LL~~Yq~WaH~LyPK~~F~Dfi~rvEkLG~kk~Vq~~-Lk~~R~~l~~~ 147 (224)
..+|-..+|+..+.-.+| ..-+|.++.+.|++.|+++=+|+.|+.+ +.-+-++..-+
T Consensus 14 ~erGVt~~dIa~lv~~lq---~~y~p~lt~ee~~~~v~~vL~KreV~~~i~tgieLD~lae 71 (159)
T d1y9ia_ 14 IERGVEIDDIAELVLFLQ---QKYHPGLELDICRQNVEHVLRKREVQNAVLTGIQLDVMAE 71 (159)
T ss_dssp HHTTCCHHHHHHHHHHHH---TTTSTTCCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHh---cccCCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 356888889888733332 3348999999999999999999999986 55565555543
No 3
>d1tlqa_ a.195.1.1 (A:) Hypothetical protein YpjQ {Bacillus subtilis [TaxId: 1423]}
Probab=28.26 E-value=35 Score=26.32 Aligned_cols=57 Identities=18% Similarity=0.380 Sum_probs=43.4
Q ss_pred cCCCChhhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCchHHHH-HHHHHhhhhhh
Q psy3792 88 KGKGHELADLNTIMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMTH-IKKIRLGMIEE 147 (224)
Q Consensus 88 KGKGhE~~DL~~LL~~Yq~WaH~LyPK~~F~Dfi~rvEkLG~kk~Vq~~-Lk~~R~~l~~~ 147 (224)
..+|-..+|+..+.-.+| ..-.|.++.+.|++.|+++=+|+.|+.+ +.-+-++..-+
T Consensus 15 ~erGVt~~dIa~lv~~lq---~~y~p~lt~eec~~~v~~vL~kreV~~~i~tgieLD~lae 72 (161)
T d1tlqa_ 15 NKRGVMIEDIARIVQKLQ---EKYNPNLPLSVCMENVEKVLNKREIIHAVLTGLALDQLAE 72 (161)
T ss_dssp HHTTCCHHHHHHHHHHHT---TTTCTTCCHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHh---ccCCCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 456888888887765433 3447999999999999999999999986 55666665543
No 4
>d1rfza_ a.195.1.1 (A:) YutG homologue {Bacillus stearothermophilus [TaxId: 1422]}
Probab=26.17 E-value=41 Score=25.98 Aligned_cols=58 Identities=16% Similarity=0.332 Sum_probs=44.9
Q ss_pred ccCCCChhhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCchHHHH-HHHHHhhhhhh
Q psy3792 87 FKGKGHELADLNTIMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMTH-IKKIRLGMIEE 147 (224)
Q Consensus 87 fKGKGhE~~DL~~LL~~Yq~WaH~LyPK~~F~Dfi~rvEkLG~kk~Vq~~-Lk~~R~~l~~~ 147 (224)
...+|-..+|+..+.-.+ ....+|.++.++|++.|+++=+|+.|+.+ +.-+-++.+-+
T Consensus 20 L~erGVt~~dIa~~v~~l---q~~y~p~lt~e~c~~~v~~vL~KRev~~~i~tgieLD~lae 78 (164)
T d1rfza_ 20 LEERGVTVEKIAELVYYL---QSKYHPDLTMEECIENVNRVISKREVQNAILTGIQLDKLAE 78 (164)
T ss_dssp HHHTTCCHHHHHHHHHHH---HTTTCSSCCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHHHH---hcccCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 456788889988876433 34558999999999999999999999986 56666655533
No 5
>d1a8oa_ a.28.3.1 (A:) HIV capsid protein, dimerisation domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=22.24 E-value=22 Score=23.36 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHHHHh
Q psy3792 113 PKSNFVDVLKRLEVL 127 (224)
Q Consensus 113 PK~~F~Dfi~rvEkL 127 (224)
||=+|.|||+|+-+.
T Consensus 7 pkEpf~dfV~Rl~~~ 21 (70)
T d1a8oa_ 7 PKEPFRDYVDRFYKT 21 (70)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 889999999887554
No 6
>d2eiaa1 a.28.3.1 (A:148-222) EIAV capsid protein p26 {Equine infectious anemia virus [TaxId: 11665]}
Probab=19.25 E-value=28 Score=23.20 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=12.2
Q ss_pred CCCCHHHHHHHHHHh
Q psy3792 113 PKSNFVDVLKRLEVL 127 (224)
Q Consensus 113 PK~~F~Dfi~rvEkL 127 (224)
||=+|.||++|+-+.
T Consensus 10 pkEpf~dfVdRl~~a 24 (75)
T d2eiaa1 10 AKEPYPEFVDRLLSQ 24 (75)
T ss_dssp TTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 888999999987543
No 7
>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]}
Probab=15.92 E-value=41 Score=25.43 Aligned_cols=23 Identities=9% Similarity=0.261 Sum_probs=19.9
Q ss_pred hhcCCCCCHHHHHHHHHHhcCCc
Q psy3792 109 NRLYPKSNFVDVLKRLEVLGHKR 131 (224)
Q Consensus 109 H~LyPK~~F~Dfi~rvEkLG~kk 131 (224)
+-.+|++++++++..+..+|=.-
T Consensus 12 ~~~~p~l~lee~l~~a~~~G~dg 34 (271)
T d2q02a1 12 RKIAPGLSIEAFFRLVKRLEFNK 34 (271)
T ss_dssp GGGCTTSCHHHHHHHHHHTTCCE
T ss_pred hhhcCCCCHHHHHHHHHHhCCCE
Confidence 55689999999999999998654
No 8
>d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.48 E-value=1.2e+02 Score=23.32 Aligned_cols=38 Identities=16% Similarity=0.437 Sum_probs=22.4
Q ss_pred CCChHHHHHhcccccccCCC---------------ChhhhHHHHHHHHH-HHHh
Q psy3792 72 PRGIQCIEQYFKDVKFKGKG---------------HELADLNTIMSNLE-HWAN 109 (224)
Q Consensus 72 p~GLp~L~k~fk~~kfKGKG---------------hE~~DL~~LL~~Yq-~WaH 109 (224)
+.....|..+...|.|+|.. -|..-+.+||..+. .|+.
T Consensus 70 ~~n~~vL~~y~~~fdf~~~~id~ALR~~l~~f~LPgEaQ~IdRile~Fa~~Y~~ 123 (211)
T d1ku1a_ 70 PDKVSLLNEYIRLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCE 123 (211)
T ss_dssp GGGHHHHHHHHHTSCCTTCCHHHHHHHHTTTCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHhccCcCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHhHHHHh
Confidence 34444455555556665532 36778888887664 4553
No 9
>d1qrjb1 a.28.3.1 (B:131-214) HTLV-I capsid protein {Human T-cell leukemia virus type 1 [TaxId: 11908]}
Probab=15.35 E-value=38 Score=23.16 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=12.1
Q ss_pred CCCCCHHHHHHHHHH
Q psy3792 112 YPKSNFVDVLKRLEV 126 (224)
Q Consensus 112 yPK~~F~Dfi~rvEk 126 (224)
=|+=+|.||++|+-+
T Consensus 9 GpkEpf~dfVdRl~~ 23 (84)
T d1qrjb1 9 GLEEPYHAFVERLNI 23 (84)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 388899999998643
No 10
>d1k77a_ c.1.15.5 (A:) Hypothetical protein YgbM (EC1530) {Escherichia coli [TaxId: 562]}
Probab=14.21 E-value=35 Score=24.84 Aligned_cols=20 Identities=10% Similarity=0.375 Sum_probs=18.4
Q ss_pred cCCCCCHHHHHHHHHHhcCC
Q psy3792 111 LYPKSNFVDVLKRLEVLGHK 130 (224)
Q Consensus 111 LyPK~~F~Dfi~rvEkLG~k 130 (224)
|||.++|+|+|..+..+|=.
T Consensus 11 ~f~~~pl~e~i~~a~~~Gf~ 30 (260)
T d1k77a_ 11 MFTEVPFIERFAAARKAGFD 30 (260)
T ss_dssp SSTTSCGGGHHHHHHHHTCS
T ss_pred cCCCCCHHHHHHHHHHhCCC
Confidence 69999999999999999965
Done!