RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3792
(224 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.41
Identities = 31/239 (12%), Positives = 67/239 (28%), Gaps = 82/239 (34%)
Query: 8 DELVDDPEPMLNEDHHPEARESQDEDEQPPPNPSEPSEDAVRVAPKKKVIRNPQPKLNAQ 67
D + D ++N+ H K ++ QPK +
Sbjct: 398 DVIKSDVMVVVNKLH------------------------------KYSLV-EKQPKESTI 426
Query: 68 RLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHW-ANRLYPKSNFVDVLKR--- 123
+ I + K K L+ + ++H+ + + + +
Sbjct: 427 SI---PSIYL--------ELKVKLENEYALHRSI--VDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 124 LEVLGHKRPVMTHIKKIRLGMIEELNQDSNLVLSD--------TETPAQPQQPTSDDIFN 175
+GH H+K I E + + L ++ A + +
Sbjct: 474 YSHIGH------HLKNIE--HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 176 DLLASQPSQHITPVVKEITEAQRERMLR-----------NRQIAEEKRLARLAMEAEQK 223
L +I + + ER++ N ++ L R+A+ AE +
Sbjct: 526 QL--KFYKPYICD-----NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.71
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 34/93 (36%)
Query: 131 RP-VMTHIKKIRLGMIEELNQDSNLV----------LSD---------TETPAQPQQPTS 170
RP ++H G +E LV L + TE A +PT+
Sbjct: 7 RPLTLSH------GSLE----HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTT 56
Query: 171 DDIFNDLLASQPSQHITPVVKEITEAQRERMLR 203
+L+ + +++ +V+ Q +++L
Sbjct: 57 PA---ELVG-KFLGYVSSLVEPSKVGQFDQVLN 85
Score = 28.5 bits (63), Expect = 2.4
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 23/65 (35%)
Query: 14 PEPMLN-EDHHPEARESQ-DEDEQPPPNPSEPSEDAVRVAPKKKVIRNPQPKL-NAQR-- 68
P PML+ + E + ++ N P+ V ++ L N +
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKT-----NSHLPAGKQVEIS------------LVNGAKNL 377
Query: 69 -LTGP 72
++GP
Sbjct: 378 VVSGP 382
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 1.2
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 180 SQPSQHIT-P-VVKEITEAQRERMLRNRQIAEEKRLARLAMEAEQ 222
+Q + P +++ E QR+R L+ A + +A++
Sbjct: 75 AQADRLTQEPESIRKWREEQRKR-LQELDAASKVMEQEWREKAKK 118
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform
A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens}
SCOP: c.37.1.5
Length = 350
Score = 27.9 bits (62), Expect = 2.4
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 3 DDIFLDELVDDPEPMLNEDHHPEARESQDEDEQPPPNPSEPSE 45
D E +PEP + + + + P P+P + SE
Sbjct: 301 DGSPDPEPSPEPEPKPSLEPNTSLEREPRPNSSPSPSPGQASE 343
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein
transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Length = 554
Score = 27.8 bits (61), Expect = 3.1
Identities = 14/101 (13%), Positives = 27/101 (26%), Gaps = 4/101 (3%)
Query: 11 VDDPEPMLNEDHHPEARESQDED----EQPPPNPSEPSEDAVRVAPKKKVIRNPQPKLNA 66
+ LN + +E D PP P +A A K ++A
Sbjct: 4 LLPGARDLNRIDDRQRKEQLQRDIERALTRPPVELNPQSEAAAPARKPDATSGHTVTVHA 63
Query: 67 QRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHW 107
L + + + + + L ++ L
Sbjct: 64 VDLDFGVEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAA 104
>2i9u_A Cytosine/guanine deaminase related protein; protein structure
initiative II (PSI-II), amidohydrol guanine deaminase;
HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP:
b.92.1.4 c.1.9.9
Length = 439
Score = 26.8 bits (60), Expect = 6.7
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 107 WANRLYPKS-NFVDVLKRLEVLGHKRPVMTH 136
L+ KS + +V + + G+ +M H
Sbjct: 239 VVKSLHKKSNFYGEVYDKFGLFGNTPTLMAH 269
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase,
oxidoreductase; HET: FMN; 2.00A {Saccharomyces
cerevisiae} SCOP: c.23.5.4
Length = 191
Score = 26.4 bits (58), Expect = 7.0
Identities = 5/31 (16%), Positives = 10/31 (32%)
Query: 9 ELVDDPEPMLNEDHHPEARESQDEDEQPPPN 39
+L P+ +D + + DE
Sbjct: 44 DLQQIALPLYEDDDELIPAQIKSVDEYADSK 74
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme
kinase, structural genomics, joint center for structural
GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Length = 192
Score = 26.0 bits (58), Expect = 7.9
Identities = 3/22 (13%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 195 EAQRER-MLRNRQIAEEKRLAR 215
E +R +R++ ++ +
Sbjct: 141 ETILKRNREADRRLKFQEDIVP 162
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.132 0.375
Gapped
Lambda K H
0.267 0.0525 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,543,505
Number of extensions: 209599
Number of successful extensions: 358
Number of sequences better than 10.0: 1
Number of HSP's gapped: 351
Number of HSP's successfully gapped: 24
Length of query: 224
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 134
Effective length of database: 4,188,903
Effective search space: 561313002
Effective search space used: 561313002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.4 bits)