RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3792
         (224 letters)



>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid
           dehydrogenase, Pyr module {Thermus thermophilus [TaxId:
           274]}
          Length = 186

 Score = 27.5 bits (60), Expect = 1.2
 Identities = 6/24 (25%), Positives = 15/24 (62%)

Query: 133 VMTHIKKIRLGMIEELNQDSNLVL 156
           +MT ++ +   + EE+ +D  +V+
Sbjct: 2   LMTMVQALNRALDEEMAKDPRVVV 25


>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B),
           Pyr module {Pseudomonas putida [TaxId: 303]}
          Length = 204

 Score = 26.6 bits (58), Expect = 2.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 134 MTHIKKIRLGMIEELNQDSNLVL 156
           MT I+ +R  M   L +D N+V+
Sbjct: 5   MTMIQALRSAMDVMLERDDNVVV 27


>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga
           maritima [TaxId: 2336]}
          Length = 280

 Score = 26.6 bits (57), Expect = 2.3
 Identities = 9/60 (15%), Positives = 26/60 (43%)

Query: 101 MSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGMIEELNQDSNLVLSDTE 160
            + L+    R    +   +V++ ++  G K+ ++ HI    +  ++ + +     + D E
Sbjct: 209 CTFLDARDRRYKNHAAIDEVMESVKAAGVKKVILYHISTRYIRQLKSVIKKYREEMPDVE 268


>d2bida_ f.1.4.1 (A:) Proapoptotic molecule Bid {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 197

 Score = 25.2 bits (55), Expect = 5.3
 Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 8/104 (7%)

Query: 122 KRLEVLGHKRPVMTHIKKIRLGMIEELNQDSNLVLSDTETPAQPQQPTSDDIFNDLLASQ 181
           + L+ LGH+ PV+    +      +EL  D N          +    + +DI  + +A  
Sbjct: 37  RELDALGHELPVLAPQWEGY----DELQTDGNRSSHSRLGRIEADSESQEDIIRN-IARH 91

Query: 182 PSQHITPVVKEITE---AQRERMLRNRQIAEEKRLARLAMEAEQ 222
            +Q    + + I           LRN   +EE R   LA   EQ
Sbjct: 92  LAQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRDLATALEQ 135


>d1ddba_ f.1.4.1 (A:) Proapoptotic molecule Bid {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 195

 Score = 24.8 bits (54), Expect = 8.9
 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 16/109 (14%)

Query: 122 KRLEVLGHKRPVMTHIKKIRLGMIEELNQDSNLVLSDTETPAQPQQPTSDDIFNDLLASQ 181
           + LEVLG + PV  + +        EL  D +                S +     +A  
Sbjct: 33  QELEVLGRELPVQAYWEADLED---ELQTDGSQASRSFNQGRIEPDSESQEEIIHNIARH 89

Query: 182 PSQ-------HITP-VVKEITEAQRERMLRNRQIAEEKRLARLAMEAEQ 222
            +Q       +I P +V+++          N  ++EE +   LA   ++
Sbjct: 90  LAQIGDEMDHNIQPTLVRQLAAQ-----FMNGSLSEEDKRNCLAKALDE 133


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 849,725
Number of extensions: 39601
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 13
Length of query: 224
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,281,736
Effective search space: 182006512
Effective search space used: 182006512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.7 bits)