BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy38
(193 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 137 bits (345), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 97/146 (66%), Gaps = 5/146 (3%)
Query: 11 ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA 70
+ D T+GV+F AR+V + DG +IKLQ+WDTAGQE FRSIT+SYYR + GALLVYDIT R
Sbjct: 49 VHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE 107
Query: 71 SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
+F H+ W+ +A++H V L+G K DL R+V E +AFA ++ ++ ET
Sbjct: 108 TFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESR---RDVKREEGEAFAREHGLIFMET 163
Query: 131 SSRSGFQVENAFTAVTQEIYNRVQSG 156
S+++ VE AF +EIY ++Q G
Sbjct: 164 SAKTACNVEEAFINTAKEIYRKIQQG 189
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/142 (47%), Positives = 97/142 (68%), Gaps = 5/142 (3%)
Query: 11 ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA 70
+ D T+GV+F AR++T+ DG +IKLQ+WDTAGQE FRSIT+SYYR + GALLVYDIT R
Sbjct: 38 VHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRD 96
Query: 71 SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
+F H+ W+ +A++H + V L+G K DL REV + E +AFA ++ ++ ET
Sbjct: 97 TFNHLTTWLEDARQHSNSN-MVIMLIGNKSDLESR---REVKKEEGEAFAREHGLIFMET 152
Query: 131 SSRSGFQVENAFTAVTQEIYNR 152
S+++ VE AF +EIY +
Sbjct: 153 SAKTASNVEEAFINTAKEIYEK 174
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 99/154 (64%), Gaps = 5/154 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ Q S+ T+GV+F +R+V + G +KLQ+WDTAGQERFRS+T+SYYR + GALLVYDIT
Sbjct: 50 FKQDSNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDIT 108
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
SR ++ + W+ +A+ P+ V L G K DL REV+ EA FA +N+++
Sbjct: 109 SRETYNSLAAWLTDARTLASPN-IVVILCGNKKDL---DPEREVTFLEASRFAQENELMF 164
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVE 161
ETS+ +G VE AF + I N++ SG+ E
Sbjct: 165 LETSALTGENVEEAFLKCARTILNKIDSGELDPE 198
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 94/140 (67%), Gaps = 5/140 (3%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GV+F R++ + G +IKLQ+WDTAGQ RFR++T+SYYR + GAL+VYDIT R+++ H
Sbjct: 62 TIGVEFGTRIIEV-SGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNH 120
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
+ W+ +A+ P+ V L+G K DL R+V+ EAK FA +N +L E S+++
Sbjct: 121 LSSWLTDARNLTNPN-TVIILIGNKADL---EAQRDVTYEEAKQFAEENGLLFLEASAKT 176
Query: 135 GFQVENAFTAVTQEIYNRVQ 154
G VE+AF ++IY +Q
Sbjct: 177 GENVEDAFLEAAKKIYQNIQ 196
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 97/146 (66%), Gaps = 5/146 (3%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
S+ T+GV+F ++++ + G +KLQ+WDTAGQERFRS+T+SYYR + GALLVYDITSR +
Sbjct: 39 SNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET 97
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
+ + W+ +A R + V L G K DL REV+ EA FA +N+++ ETS
Sbjct: 98 YNALTNWLTDA-RMLASQNIVIILCGNKKDL---DADREVTFLEASRFAQENELMFLETS 153
Query: 132 SRSGFQVENAFTAVTQEIYNRVQSGD 157
+ +G VE AF ++I N+++SG+
Sbjct: 154 ALTGENVEEAFVQCARKILNKIESGE 179
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 93/136 (68%), Gaps = 5/136 (3%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GV+F R++ + G +IKLQ+WDTAGQERFR++T+SYYR + GAL+VYDIT R+++ H
Sbjct: 47 TIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNH 105
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
+ W+ +A+ P+ V L+G K DL R+V+ EAK FA +N +L E S+++
Sbjct: 106 LSSWLTDARNLTNPN-TVIILIGNKADL---EAQRDVTYEEAKQFAEENGLLFLEASAKT 161
Query: 135 GFQVENAFTAVTQEIY 150
G VE+AF ++IY
Sbjct: 162 GENVEDAFLEAAKKIY 177
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 92/141 (65%), Gaps = 5/141 (3%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
S+ T+GV+F ++++ + G +KLQ+WDTAGQERFRS+T+SYYR + GALLVYDITSR +
Sbjct: 40 SNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET 98
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
+ + W+ +A R + V L G K DL REV+ EA FA +N+++ ETS
Sbjct: 99 YNALTNWLTDA-RMLASQNIVIILCGNKKDL---DADREVTFLEASRFAQENELMFLETS 154
Query: 132 SRSGFQVENAFTAVTQEIYNR 152
+ +G VE AF ++I N+
Sbjct: 155 ALTGEDVEEAFVQCARKILNK 175
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 91/141 (64%), Gaps = 5/141 (3%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
S+ T+GV+F ++++ + G +KLQ+WDTAG ERFRS+T+SYYR + GALLVYDITSR +
Sbjct: 37 SNHTIGVEFGSKIINV-GGKYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRET 95
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
+ + W+ +A R + V L G K DL REV+ EA FA +N+++ ETS
Sbjct: 96 YNALTNWLTDA-RMLASQNIVIILCGNKKDL---DADREVTFLEASRFAQENELMFLETS 151
Query: 132 SRSGFQVENAFTAVTQEIYNR 152
+ +G VE AF ++I N+
Sbjct: 152 ALTGEDVEEAFVQCARKILNK 172
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 85/139 (61%), Gaps = 5/139 (3%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
S T+GV+F R + + DG IK Q+WDTAGQER+R IT +YYR +VGALLVYDI +
Sbjct: 34 SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLT 92
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
+E++ W+ E + H + + V LVG K DL R V EA+AFA +N++ ETS
Sbjct: 93 YENVERWLKELRDHADSN-IVIMLVGNKSDLRH---LRAVPTDEARAFAEKNNLSFIETS 148
Query: 132 SRSGFQVENAFTAVTQEIY 150
+ VE AF + EIY
Sbjct: 149 ALDSTNVEEAFKNILTEIY 167
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 85/139 (61%), Gaps = 5/139 (3%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
S T+GV+F R + + DG IK Q+WDTAGQER+R+IT +YYR +VGALLVYDI +
Sbjct: 49 SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLT 107
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
+E++ W+ E + H + + V LVG K DL R V EA+AFA +N + ETS
Sbjct: 108 YENVERWLKELRDHADSN-IVIMLVGNKSDLRH---LRAVPTDEARAFAEKNGLSFIETS 163
Query: 132 SRSGFQVENAFTAVTQEIY 150
+ VE AF + EIY
Sbjct: 164 ALDSTNVEAAFQTILTEIY 182
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 85/139 (61%), Gaps = 5/139 (3%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
S T+GV+F R + + DG IK Q+WDTAGQER+R+IT +YYR +VGALLVYDI +
Sbjct: 58 SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLT 116
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
+E++ W+ E + H + + V LVG K DL R V EA+AFA +N + ETS
Sbjct: 117 YENVERWLKELRDHADSN-IVIMLVGNKSDLRH---LRAVPTDEARAFAEKNGLSFIETS 172
Query: 132 SRSGFQVENAFTAVTQEIY 150
+ VE AF + EIY
Sbjct: 173 ALDSTNVEAAFQTILTEIY 191
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 92/139 (66%), Gaps = 6/139 (4%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GVDF + + ++ G R+KLQ+WDTAGQERFR+IT+SYYR++ GA+L YDIT R+SF
Sbjct: 61 TIGVDFTMKTLEIQ-GKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLS 119
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL-HFETSSR 133
+P W+ + +++ + V L+G K DL + REVS AEA++ A DIL ETS++
Sbjct: 120 VPHWIEDVRKYAGSN-IVQLLIGNKSDLSE---LREVSLAEAQSLAEHYDILCAIETSAK 175
Query: 134 SGFQVENAFTAVTQEIYNR 152
VE AF V E+ R
Sbjct: 176 DSSNVEEAFLRVATELIMR 194
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 114 bits (284), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
S T+GV+F + + +++ IK Q+WDTAGQER+R+IT +YYR +VGALLVYDIT + S
Sbjct: 36 SKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNS 95
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
FE+I W+ E + + + + V LVG K DL R +++ +A +A + + ETS
Sbjct: 96 FENIEKWLKELRDNADSN-IVILLVGNKSDLKH---LRVINDNDATQYAKKEKLAFIETS 151
Query: 132 SRSGFQVENAFTAVTQEIYN 151
+ VE AF + EIYN
Sbjct: 152 ALEATNVELAFHQLLNEIYN 171
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 113 bits (282), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 90/139 (64%), Gaps = 5/139 (3%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
TVG+DF +++ + DG ++KLQ+WDTAGQERFRS+T +YYR++ LL+YD+T++ASF+
Sbjct: 42 STVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFD 100
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
+I W+ E + + H L+G K+D S R V + + A + + ETS++
Sbjct: 101 NIQAWLTEIHEYAQ-HDVALMLLGNKVD---SAHERVVKREDGEKLAKEYGLPFMETSAK 156
Query: 134 SGFQVENAFTAVTQEIYNR 152
+G V+ AFTA+ +E+ R
Sbjct: 157 TGLNVDLAFTAIAKELKRR 175
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 112 bits (281), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 89/142 (62%), Gaps = 5/142 (3%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
S T+GV+F R + + +G RIK Q+WDTAGQER+R+IT +YYR +VGAL+VYDI+ +S
Sbjct: 42 SKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSS 100
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
+E+ W+ E + + + + V L+G K DL R V E+K FA +N +L ETS
Sbjct: 101 YENCNHWLSELRENADDNVAV-GLIGNKSDLAH---LRAVPTEESKTFAQENQLLFTETS 156
Query: 132 SRSGFQVENAFTAVTQEIYNRV 153
+ + V+ AF + IY +V
Sbjct: 157 ALNSENVDKAFEELINTIYQKV 178
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 84/139 (60%), Gaps = 5/139 (3%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
S T+GV+F R + + DG IK Q+WDTAG ER+R+IT +YYR +VGALLVYDI +
Sbjct: 40 SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLT 98
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
+E++ W+ E + H + + V LVG K DL R V EA+AFA +N + ETS
Sbjct: 99 YENVERWLKELRDHADSN-IVIXLVGNKSDLRH---LRAVPTDEARAFAEKNGLSFIETS 154
Query: 132 SRSGFQVENAFTAVTQEIY 150
+ VE AF + EIY
Sbjct: 155 ALDSTNVEAAFQTILTEIY 173
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 84/139 (60%), Gaps = 5/139 (3%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
S T+GV+F R + + DG IK Q+WDTAG ER+R+IT +YYR +VGALLVYDI +
Sbjct: 37 SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLT 95
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
+E++ W+ E + H + + V LVG K DL R V EA+AFA +N + ETS
Sbjct: 96 YENVERWLKELRDHADSN-IVIMLVGNKSDLRH---LRAVPTDEARAFAEKNGLSFIETS 151
Query: 132 SRSGFQVENAFTAVTQEIY 150
+ VE AF + EIY
Sbjct: 152 ALDSTNVEAAFQTILTEIY 170
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 84/139 (60%), Gaps = 5/139 (3%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
S T+GV+F R + + DG IK Q+WDTAG ER+R+IT +YYR +VGALLVYDI +
Sbjct: 34 SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLT 92
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
+E++ W+ E + H + + V LVG K DL R V EA+AFA +N + ETS
Sbjct: 93 YENVERWLKELRDHADSN-IVIXLVGNKSDLRH---LRAVPTDEARAFAEKNGLSFIETS 148
Query: 132 SRSGFQVENAFTAVTQEIY 150
+ VE AF + EIY
Sbjct: 149 ALDSTNVEAAFQTILTEIY 167
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 86/141 (60%), Gaps = 5/141 (3%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
T+GVDF R +++ + +KLQ+WDTAGQERFR+IT SYYR + G ++VYD+T R SF+
Sbjct: 40 STIGVDFKIRTISLENKT-VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFD 98
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
++ W+ E R+ + LVG K DL+ R V+ E + A + I ETS++
Sbjct: 99 NVKQWIQEIDRYAMENVNKL-LVGNKCDLVS---KRVVTSDEGRELADSHGIKFIETSAK 154
Query: 134 SGFQVENAFTAVTQEIYNRVQ 154
+ + VE AF + EI RVQ
Sbjct: 155 NAYNVEQAFHTMAGEIKKRVQ 175
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 84/139 (60%), Gaps = 5/139 (3%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
S T+GV+F R + + DG IK Q+WDTAG ER+R+IT +YYR +VGALLVYDI +
Sbjct: 58 SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLT 116
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
+E++ W+ E + H + + V LVG K DL R V EA+AFA +N + ETS
Sbjct: 117 YENVERWLKELRDHADSN-IVIMLVGNKSDLRH---LRAVPTDEARAFAEKNGLSFIETS 172
Query: 132 SRSGFQVENAFTAVTQEIY 150
+ VE AF + EIY
Sbjct: 173 ALDSTNVEAAFQTILTEIY 191
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 84/128 (65%), Gaps = 5/128 (3%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GVDF + V + +G ++KLQ+WDTAGQERFRSIT+SYYR++ +L YDIT SF
Sbjct: 58 TIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRC 116
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
+P W+ E +++ ++ + LVG K+DL + REVS+ A+ F+ D+ + ETS++
Sbjct: 117 LPEWLREIEQY-ASNKVITVLVGNKIDLAER---REVSQQRAEEFSEAQDMYYLETSAKE 172
Query: 135 GFQVENAF 142
VE F
Sbjct: 173 SDNVEKLF 180
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 85/142 (59%), Gaps = 5/142 (3%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
S T+GV+F R V M A +K Q+WDTAG ER+R+IT +YYR +VGALLV+D+T +
Sbjct: 39 SRTTIGVEFSTRTV-MLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQT 97
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
+ + W+ E H E V LVG K DL Q+ REV EA+ FA N +L ETS
Sbjct: 98 YAVVERWLKELYDHAEA-TIVVMLVGNKSDLSQA---REVPTEEARMFAENNGLLFLETS 153
Query: 132 SRSGFQVENAFTAVTQEIYNRV 153
+ VE AF V +EI+ +V
Sbjct: 154 ALDSTNVELAFETVLKEIFAKV 175
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 85/142 (59%), Gaps = 5/142 (3%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
S T+GV+F R V M A +K Q+WDTAG ER+R+IT +YYR +VGALLV+D+T +
Sbjct: 54 SRTTIGVEFSTRTV-MLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQT 112
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
+ + W+ E H E V LVG K DL Q+ REV EA+ FA N +L ETS
Sbjct: 113 YAVVERWLKELYDHAEA-TIVVMLVGNKSDLSQA---REVPTEEARMFAENNGLLFLETS 168
Query: 132 SRSGFQVENAFTAVTQEIYNRV 153
+ VE AF V +EI+ +V
Sbjct: 169 ALDSTNVELAFETVLKEIFAKV 190
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 109 bits (273), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 92/160 (57%), Gaps = 18/160 (11%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
T+G+DF R + + DG RIKLQ+WDTAGQERFR+IT +YYR ++G +LVYDIT+ SF+
Sbjct: 39 STIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD 97
Query: 74 HIPVWMMEAKRHIEPHRPVFA---LVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
+I W+ R+IE H ++G K D+ R+VS+ + A I ET
Sbjct: 98 NIRNWI----RNIEEHASADVEKMILGNKCDVND---KRQVSKERGEKLALDYGIKFMET 150
Query: 131 SSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTG 170
S+++ VENAF + ++I K++ W+ G
Sbjct: 151 SAKANINVENAFFTLARDI-------KAKMDKNWKATAAG 183
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 86/139 (61%), Gaps = 11/139 (7%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
T+G+DF R + + DG RIKLQ+WDTAGQERFR+IT +YYR ++G +LVYDIT+ SF+
Sbjct: 37 STIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD 95
Query: 74 HIPVWMMEAKRHIEPHRPVFA---LVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
+I W+ R+IE H ++G K D+ R+VS+ + A I ET
Sbjct: 96 NIRNWI----RNIEEHASADVEKMILGNKCDVND---KRQVSKERGEKLALDYGIKFMET 148
Query: 131 SSRSGFQVENAFTAVTQEI 149
S+++ VENAF + ++I
Sbjct: 149 SAKANINVENAFFTLARDI 167
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 82/142 (57%), Gaps = 5/142 (3%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GVDF R + + DG IKLQ+WDTAGQERFR+IT SYYR + G ++VYD+T + SF +
Sbjct: 48 TIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 106
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
+ W+ E R+ + LVG K DL V V AK FA I ETS+++
Sbjct: 107 VKQWLQEIDRYASENVNKL-LVGNKCDLTTKKV---VDYTTAKEFADSLGIPFLETSAKN 162
Query: 135 GFQVENAFTAVTQEIYNRVQSG 156
VE +F + EI R+ G
Sbjct: 163 ATNVEQSFMTMAAEIKKRMGPG 184
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 81/140 (57%), Gaps = 5/140 (3%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
T+GVDF R + + DG IKLQ+WDTAGQERFR+IT SYYR + G ++VYD+T + SF
Sbjct: 30 STIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 88
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
++ W+ E R+ + LVG K DL V V AK FA I ETS++
Sbjct: 89 NVKQWLQEIDRYASENVNKL-LVGNKCDLTTKKV---VDYTTAKEFADSLGIPFLETSAK 144
Query: 134 SGFQVENAFTAVTQEIYNRV 153
+ VE +F + EI R+
Sbjct: 145 NATNVEQSFMTMAAEIKKRM 164
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 81/139 (58%), Gaps = 5/139 (3%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GVDF R + + DG IKLQ+WDTAGQERFR+IT SYYR + G ++VYD+T + SF +
Sbjct: 40 TIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 98
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
+ W+ E R+ + LVG K DL V V AK FA I ETS+++
Sbjct: 99 VKQWLQEIDRYASENVNKL-LVGIKCDLTTKKV---VDYTTAKEFADSLGIPFLETSAKN 154
Query: 135 GFQVENAFTAVTQEIYNRV 153
VE +F + EI R+
Sbjct: 155 ATNVEQSFMTMAAEIKKRM 173
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 81/140 (57%), Gaps = 5/140 (3%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
T+GVDF R + + DG IKLQ+WDTAGQERFR+IT SYYR + G ++VYD+T + SF
Sbjct: 37 STIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 95
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
++ W+ E R+ + LVG K DL V V AK FA I ETS++
Sbjct: 96 NVKQWLQEIDRYASENVNKL-LVGNKCDLTTKKV---VDYTTAKEFADSLGIPFLETSAK 151
Query: 134 SGFQVENAFTAVTQEIYNRV 153
+ VE +F + EI R+
Sbjct: 152 NATNVEQSFMTMAAEIKKRM 171
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 81/140 (57%), Gaps = 5/140 (3%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
T+GVDF R + + DG IKLQ+WDTAGQERFR+IT SYYR + G ++VYD+T + SF
Sbjct: 37 STIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 95
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
++ W+ E R+ + LVG K DL V V AK FA I ETS++
Sbjct: 96 NVKQWLQEIDRYASENVNKL-LVGNKCDLTTKKV---VDYTTAKEFADSLGIPFLETSAK 151
Query: 134 SGFQVENAFTAVTQEIYNRV 153
+ VE +F + EI R+
Sbjct: 152 NATNVEQSFMTMAAEIKKRM 171
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 81/139 (58%), Gaps = 5/139 (3%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GVDF R + + DG IKLQ+WDTAGQERFR+IT SYYR + G ++VYD+T + SF +
Sbjct: 48 TIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 106
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
+ W+ E R+ + LVG K DL V V AK FA I ETS+++
Sbjct: 107 VKQWLQEIDRYASENVNKL-LVGNKCDLTTKKV---VDYTTAKEFADSLGIPFLETSAKN 162
Query: 135 GFQVENAFTAVTQEIYNRV 153
VE +F + EI R+
Sbjct: 163 ATNVEQSFMTMAAEIKKRM 181
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 107 bits (266), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 81/139 (58%), Gaps = 5/139 (3%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GVDF R + + DG IKLQ+WDTAGQERFR+IT SYYR + G ++VYD+T + SF +
Sbjct: 57 TIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 115
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
+ W+ E R+ + LVG K DL V V AK FA I ETS+++
Sbjct: 116 VKQWLQEIDRYASENVNKL-LVGNKCDLTTKKV---VDYTTAKEFADSLGIPFLETSAKN 171
Query: 135 GFQVENAFTAVTQEIYNRV 153
VE +F + EI R+
Sbjct: 172 ATNVEQSFMTMAAEIKKRM 190
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 107 bits (266), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 81/140 (57%), Gaps = 5/140 (3%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
T+GVDF R + + DG IKLQ+WDTAGQERFR+IT SYYR + G ++VYD+T + S+
Sbjct: 40 STIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYA 98
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
++ W+ E R+ + LVG K DL V V AK FA I ETS++
Sbjct: 99 NVKQWLQEIDRYASENVNKL-LVGNKSDLTTKKV---VDNTTAKEFADSLGIPFLETSAK 154
Query: 134 SGFQVENAFTAVTQEIYNRV 153
+ VE AF + EI R+
Sbjct: 155 NATNVEQAFMTMAAEIKKRM 174
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 107 bits (266), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 81/140 (57%), Gaps = 5/140 (3%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
T+GVDF R + + DG IKLQ+WDTAGQERFR+IT SYYR + G ++VYD+T + S+
Sbjct: 40 STIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYA 98
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
++ W+ E R+ + LVG K DL V V AK FA I ETS++
Sbjct: 99 NVKQWLQEIDRYASENVNKL-LVGNKSDLTTKKV---VDNTTAKEFADSLGIPFLETSAK 154
Query: 134 SGFQVENAFTAVTQEIYNRV 153
+ VE AF + EI R+
Sbjct: 155 NATNVEQAFMTMAAEIKKRM 174
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 106 bits (264), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 79/138 (57%), Gaps = 5/138 (3%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GVDF R + + DG IKLQ+WDTAGQERFR+IT SYYR + G ++VYD+T + SF +
Sbjct: 65 TIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 123
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
+ W+ E R+ + LVG K DL V V AK FA I ETS+++
Sbjct: 124 VKQWLQEIDRYASENVNKL-LVGNKCDLTTKKV---VDYTTAKEFADSLGIPFLETSAKN 179
Query: 135 GFQVENAFTAVTQEIYNR 152
VE +F EI R
Sbjct: 180 ATNVEQSFXTXAAEIKKR 197
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 80/136 (58%), Gaps = 5/136 (3%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
T+GVDF + V + DG +KLQ+WDTAGQERFR+IT SYYR S G ++VYD+T + SF
Sbjct: 39 STIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFN 97
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
+ +W+ E R+ + LVG K DL R V AK FA N + ETS+
Sbjct: 98 GVKMWLQEIDRY-ATSTVLKLLVGNKCDLKD---KRVVEYDVAKEFADANKMPFLETSAL 153
Query: 134 SGFQVENAFTAVTQEI 149
VE+AF + ++I
Sbjct: 154 DSTNVEDAFLTMARQI 169
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 80/136 (58%), Gaps = 5/136 (3%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
T+GVDF + V + DG +KLQ+WDTAGQERFR+IT SYYR S G ++VYD+T + SF
Sbjct: 39 STIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFN 97
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
+ +W+ E R+ + LVG K DL R V AK FA N + ETS+
Sbjct: 98 GVKMWLQEIDRY-ATSTVLKLLVGNKCDLKD---KRVVEYDVAKEFADANKMPFLETSAL 153
Query: 134 SGFQVENAFTAVTQEI 149
VE+AF + ++I
Sbjct: 154 DSTNVEDAFLTMARQI 169
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 86/147 (58%), Gaps = 6/147 (4%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ + TVGVDF + V +R G +I+LQ+WDTAGQERF SIT +YYR++ G +LVYDIT
Sbjct: 51 FCEACKSTVGVDFKIKTVELR-GKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDIT 109
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
+ +F+ +P WM ++ + LVG KLD RE++ + + FA Q +
Sbjct: 110 KKETFDDLPKWMKMIDKYASEDAELL-LVGNKLD---CETDREITRQQGEKFAQQITGMR 165
Query: 128 F-ETSSRSGFQVENAFTAVTQEIYNRV 153
F E S++ F V+ F + +I ++
Sbjct: 166 FCEASAKDNFNVDEIFLKLVDDILKKM 192
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 80/136 (58%), Gaps = 5/136 (3%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
T+GVDF + V + DG +KLQ+WDTAGQERFR+IT SYYR S G ++VYD+T + SF
Sbjct: 52 STIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFN 110
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
+ +W+ E R+ + LVG K DL R V AK FA N + ETS+
Sbjct: 111 GVKMWLQEIDRY-ATSTVLKLLVGNKCDLKD---KRVVEYDVAKEFADANKMPFLETSAL 166
Query: 134 SGFQVENAFTAVTQEI 149
VE+AF + ++I
Sbjct: 167 DSTNVEDAFLTMARQI 182
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 85/143 (59%), Gaps = 4/143 (2%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ + +PT+G F + VT+ + +K ++WDTAGQERF S+ YYRN+ AL+VYD+T
Sbjct: 28 FAENKEPTIGAAFLTQRVTINEHT-VKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVT 86
Query: 68 SRASFEHIPVWMMEAKRHIEPHRP-VFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126
SF W+ E H + + + ALVG K+D LQ G R+V+ E + A + +L
Sbjct: 87 KPQSFIKARHWVKEL--HEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLL 144
Query: 127 HFETSSRSGFQVENAFTAVTQEI 149
FETS+++G V + F + ++I
Sbjct: 145 FFETSAKTGENVNDVFLGIGEKI 167
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 86/142 (60%), Gaps = 5/142 (3%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
S T+GV+F R + + + +IK Q+WDTAG ER+R+IT +YYR +VGAL+VYDI+ +S
Sbjct: 39 SKSTIGVEFATRTIEVEN-KKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSS 97
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
+E+ W+ E + + + + V L+G K DL R V EAK FA +N +L ETS
Sbjct: 98 YENCNHWLTELRENADDNVAV-GLIGNKSDLAH---LRAVPTDEAKNFAMENQMLFTETS 153
Query: 132 SRSGFQVENAFTAVTQEIYNRV 153
+ + V+ AF + I+ V
Sbjct: 154 ALNSDNVDKAFRELIVAIFQMV 175
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+++ + T+G FF++ + + D A +K ++WDTAGQER+ S+ YYR + A++V+D+T
Sbjct: 37 FVEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVT 95
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
++ASFE W+ E + P+ V AL G K DLL + R+V+ +A+ +A +N +
Sbjct: 96 NQASFERAKKWVQELQAQGNPNM-VMALAGNKSDLLDA---RKVTAEDAQTYAQENGLFF 151
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQ 154
ETS+++ V+ F + + + RVQ
Sbjct: 152 METSAKTATNVKEIFYEIARRL-PRVQ 177
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 82/135 (60%), Gaps = 8/135 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
T+GVDF R V + +G ++KLQ+WDTAGQERFR+IT +YYR + G ++VYD+TS SF
Sbjct: 40 TTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFV 98
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAE-AKAFASQNDILHFETSS 132
++ W+ E ++ + + LVG K D R+V E E A FA Q I FETS+
Sbjct: 99 NVKRWLHEINQNCDDVCRI--LVGNKND----DPERKVVETEDAYKFAGQMGIQLFETSA 152
Query: 133 RSGFQVENAFTAVTQ 147
+ VE F +T+
Sbjct: 153 KENVNVEEMFNCITE 167
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 99.8 bits (247), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 89/149 (59%), Gaps = 12/149 (8%)
Query: 15 TVGVDFFARLVTMR----DGA-----RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYD 65
TVG+DF + V +G+ ++ LQLWDTAGQERFRS+T +++R+++G LL++D
Sbjct: 57 TVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFD 116
Query: 66 ITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI 125
+TS+ SF ++ WM + + + P L+G K DL REV+E +A+ A + I
Sbjct: 117 LTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ---REVNERQARELADKYGI 173
Query: 126 LHFETSSRSGFQVENAFTAVTQEIYNRVQ 154
+FETS+ +G VE A + I R++
Sbjct: 174 PYFETSAATGQNVEKAVETLLDLIMKRME 202
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 81/135 (60%), Gaps = 5/135 (3%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GVDF + +++ DG + KL +WDTAGQERFR++T SYYR + G +LVYD+T R +F
Sbjct: 47 TIGVDFKVKTISV-DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVK 105
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
+ W+ E + + + V LVG K+D REV E FA ++ L E S+++
Sbjct: 106 LDNWLNELETYCTRNDIVNXLVGNKIDKEN----REVDRNEGLKFARKHSXLFIEASAKT 161
Query: 135 GFQVENAFTAVTQEI 149
V+ AF + ++I
Sbjct: 162 CDGVQCAFEELVEKI 176
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 85/149 (57%), Gaps = 12/149 (8%)
Query: 15 TVGVDFFARLVTMR----DGA-----RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYD 65
TVG+DF + V R DGA RI LQLWDTAG ERFRS+T +++R+++G LL++D
Sbjct: 43 TVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFD 102
Query: 66 ITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI 125
+T+ SF ++ W+ + + H P L G K DL R V E EA+ A + I
Sbjct: 103 LTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQ---RAVKEEEARELAEKYGI 159
Query: 126 LHFETSSRSGFQVENAFTAVTQEIYNRVQ 154
+FETS+ +G + +A + I R++
Sbjct: 160 PYFETSAANGTNISHAIEMLLDLIMKRME 188
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 17/167 (10%)
Query: 2 VTLLYLYIQIS-DP----TVGVDFFARLVTMR----DGA-----RIKLQLWDTAGQERFR 47
T LY Y +P TVG+DF + V DGA ++ LQLWDTAG ERFR
Sbjct: 25 TTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFR 84
Query: 48 SITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGV 107
S+T +++R+++G LL++D+TS+ SF ++ WM + + + P L+G K DL
Sbjct: 85 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ-- 142
Query: 108 PREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154
REV+E +A+ A + I +FETS+ +G VE + + I R++
Sbjct: 143 -REVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRME 188
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 88/149 (59%), Gaps = 12/149 (8%)
Query: 15 TVGVDFFARLVTMR----DGA-----RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYD 65
TVG+DF + V DGA ++ LQLWDTAG ERFRS+T +++R+++G LL++D
Sbjct: 43 TVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFD 102
Query: 66 ITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI 125
+TS+ SF ++ WM + + + P L+G K DL REV+E +A+ A + I
Sbjct: 103 LTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ---REVNERQARELAEKYGI 159
Query: 126 LHFETSSRSGFQVENAFTAVTQEIYNRVQ 154
+FETS+ +G VE + + I R++
Sbjct: 160 PYFETSAATGQNVEKSVETLLDLIMKRME 188
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 80/125 (64%), Gaps = 7/125 (5%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFR-SITKSYYRNSVGALLVYDITSRA 70
++ T+GVDF R V + DG RIK+QLWDTAGQERFR S+ + YYRN + VYD+T+ A
Sbjct: 49 TEATIGVDFRERAVDI-DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMA 107
Query: 71 SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQS-GVPREVSEAEAKAFASQNDILHFE 129
SF +P W+ E K+H+ + LVG K DL + VP ++ A+ FA + + FE
Sbjct: 108 SFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDL----AQKFADTHSMPLFE 163
Query: 130 TSSRS 134
TS+++
Sbjct: 164 TSAKN 168
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 78/137 (56%), Gaps = 5/137 (3%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
+ T+G F + V + D +K ++WDTAGQER+ S+ YYR + A++VYDIT++ +F
Sbjct: 38 ESTIGAAFLTQSVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETF 96
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
W+ E +R P V AL G K DL R V EA+A+A N +L ETS+
Sbjct: 97 ARAKTWVKELQRQASPS-IVIALAGNKADLANK---RMVEYEEAQAYADDNSLLFMETSA 152
Query: 133 RSGFQVENAFTAVTQEI 149
++ V + F A+ +++
Sbjct: 153 KTAMNVNDLFLAIAKKL 169
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 78/125 (62%), Gaps = 7/125 (5%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFR-SITKSYYRNSVGALLVYDITSRA 70
++ T+GVDF R V + DG RIK+QLWDTAGQERFR S+ + YYRN + VYD T+ A
Sbjct: 58 TEATIGVDFRERAVDI-DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXA 116
Query: 71 SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQS-GVPREVSEAEAKAFASQNDILHFE 129
SF +P W+ E K+H+ + LVG K DL + VP ++ A+ FA + FE
Sbjct: 117 SFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDL----AQKFADTHSXPLFE 172
Query: 130 TSSRS 134
TS+++
Sbjct: 173 TSAKN 177
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 77/137 (56%), Gaps = 5/137 (3%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
+ T+G F + V + D +K ++WDTAGQER+ S+ YYR + A++VYDIT+ +F
Sbjct: 33 ESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTF 91
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
W+ E +R P+ V AL G K DL R V EA+A+A N +L ETS+
Sbjct: 92 ARAKNWVKELQRQASPN-IVIALAGNKADL---ASKRAVEFQEAQAYADDNSLLFMETSA 147
Query: 133 RSGFQVENAFTAVTQEI 149
++ V F A+ +++
Sbjct: 148 KTAMNVNEIFMAIAKKL 164
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 10 QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR 69
+ + T+G F + V + D +K ++WDTAGQER+ S+ YYR + A++VYDIT+
Sbjct: 33 EFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNE 91
Query: 70 ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129
SF W+ E +R P+ V AL G K DL R V EA+++A N +L E
Sbjct: 92 ESFARAKNWVKELQRQASPN-IVIALSGNKADLAN---KRAVDFQEAQSYADDNSLLFME 147
Query: 130 TSSRSGFQVENAFTAVTQEI 149
TS+++ V F A+ +++
Sbjct: 148 TSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 10 QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR 69
+ + T+G F + V + D +K ++WDTAGQER+ S+ YYR + A++VYDIT+
Sbjct: 33 EFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNE 91
Query: 70 ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129
SF W+ E +R P+ V AL G K DL R V EA+++A N +L E
Sbjct: 92 ESFARAKNWVKELQRQASPN-IVIALSGNKADLAN---KRAVDFQEAQSYADDNSLLFME 147
Query: 130 TSSRSGFQVENAFTAVTQEI 149
TS+++ V F A+ +++
Sbjct: 148 TSAKTSMNVNEIFMAIAKKL 167
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 10 QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR 69
+ + T+G F + V + D +K ++WDTAGQER+ S+ YYR + A++VYDIT+
Sbjct: 34 EFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNE 92
Query: 70 ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129
SF W+ E +R P+ V AL G K DL R V EA+++A N +L E
Sbjct: 93 ESFARAKNWVKELQRQASPN-IVIALSGNKADLAN---KRAVDFQEAQSYADDNSLLFME 148
Query: 130 TSSRSGFQVENAFTAVTQEI 149
TS+++ V F A+ +++
Sbjct: 149 TSAKTSMNVNEIFMAIAKKL 168
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 10 QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR 69
+ + T+G F + V + D +K ++WDTAGQER+ S+ YYR + A++VYDIT+
Sbjct: 33 EFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNE 91
Query: 70 ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129
SF W+ E +R P+ V AL G K DL R V EA+++A N +L E
Sbjct: 92 ESFARAKNWVKELQRQASPN-IVIALSGNKADLAN---KRAVDFQEAQSYADDNSLLFME 147
Query: 130 TSSRSGFQVENAFTAVTQEI 149
TS+++ V F A+ +++
Sbjct: 148 TSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 10 QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR 69
+ + T+G F + V + D +K ++WDTAGQER+ S+ YYR + A++VYDIT+
Sbjct: 33 EFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNE 91
Query: 70 ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129
SF W+ E +R P+ V AL G K DL R V EA+++A N +L E
Sbjct: 92 ESFARAKNWVKELQRQASPN-IVIALSGNKADLAN---KRAVDFQEAQSYADDNSLLFME 147
Query: 130 TSSRSGFQVENAFTAVTQEI 149
TS+++ V F A+ +++
Sbjct: 148 TSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 10 QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR 69
+ + T+G F + V + D +K ++WDTAGQER+ S+ YYR + A++VYDIT+
Sbjct: 33 EFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNE 91
Query: 70 ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129
SF W+ E +R P+ V AL G K DL R V EA+++A N +L E
Sbjct: 92 ESFARAKNWVKELQRQASPN-IVIALSGNKADLAN---KRAVDFQEAQSYADDNSLLFME 147
Query: 130 TSSRSGFQVENAFTAVTQEI 149
TS+++ V F A+ +++
Sbjct: 148 TSAKTSMNVNEIFMAIAKKL 167
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 80/141 (56%), Gaps = 6/141 (4%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+G+DF + V + +G ++KLQLWDTAGQERFR+IT +YYR ++G +LVYD+T +F +
Sbjct: 52 TIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTN 110
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
I W H + LVG K D+ R V+ + +A A + I E+S+++
Sbjct: 111 IKQWFKTVNEHANDEAQLL-LVGNKSDM----ETRVVTADQGEALAKELGIPFIESSAKN 165
Query: 135 GFQVENAFTAVTQEIYNRVQS 155
V F + + I ++ S
Sbjct: 166 DDNVNEIFFTLAKLIQEKIDS 186
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 10 QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR 69
+ + T+G F + V + D +K ++WDTAGQER+ S+ YYR + A++VYDIT+
Sbjct: 33 EFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNE 91
Query: 70 ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129
SF W+ E +R P+ V AL G K DL R V EA+++A N +L E
Sbjct: 92 ESFARAKNWVKELQRQASPN-IVIALSGNKADLANK---RAVDFQEAQSYADDNSLLFME 147
Query: 130 TSSRSGFQVENAFTAVTQEI 149
TS+++ V F A+ +++
Sbjct: 148 TSAKTSMNVNEIFMAIAKKL 167
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 78/128 (60%), Gaps = 5/128 (3%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+G+DF ++ + + +G ++LQLWDTAGQERFRS+ SY R+S A++VYDIT+R SFE+
Sbjct: 33 TIGIDFLSKTLYLDEGP-VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFEN 91
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
W+ + + ALVG K DL G R+V+ E A + + ETS+++
Sbjct: 92 TTKWIQDILNE-RGKDVIIALVGNKTDL---GDLRKVTYEEGXQKAQEYNTXFHETSAKA 147
Query: 135 GFQVENAF 142
G ++ F
Sbjct: 148 GHNIKVLF 155
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 10 QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR 69
+ + T+G F + V + D +K ++WDTAGQER+ S+ YYR + A++VYDIT+
Sbjct: 34 EFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNE 92
Query: 70 ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129
SF W+ E +R P+ V AL G K DL R V EA+++A N +L E
Sbjct: 93 ESFARAKNWVKELQRQASPN-IVIALSGNKADLAN---KRAVDFQEAQSYADDNSLLFXE 148
Query: 130 TSSRSGFQVENAFTAVTQEI 149
TS+++ V F A+ +++
Sbjct: 149 TSAKTSXNVNEIFXAIAKKL 168
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 80/141 (56%), Gaps = 6/141 (4%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+G+DF + V + +G ++KLQLWDTAGQERFR+IT +YYR ++G +LVYD+T +F +
Sbjct: 39 TIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTN 97
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
I W H + LVG K D+ R V+ + +A A + I E+S+++
Sbjct: 98 IKQWFKTVNEHANDEAQLL-LVGNKSDM----ETRVVTADQGEALAKELGIPFIESSAKN 152
Query: 135 GFQVENAFTAVTQEIYNRVQS 155
V F + + I ++ S
Sbjct: 153 DDNVNEIFFTLAKLIQEKIDS 173
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 80/141 (56%), Gaps = 6/141 (4%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+G+DF + V + +G ++KLQ+WDTAGQERFR+IT +YYR ++G +LVYDIT +F +
Sbjct: 35 TIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTN 93
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
I W H + LVG K D+ R V+ + +A A + I E+S+++
Sbjct: 94 IKQWFKTVNEHANDEAQLL-LVGNKSDM----ETRVVTADQGEALAKELGIPFIESSAKN 148
Query: 135 GFQVENAFTAVTQEIYNRVQS 155
V F + + I ++ S
Sbjct: 149 DDNVNEIFFTLAKLIQEKIDS 169
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 79/131 (60%), Gaps = 5/131 (3%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+G+DF ++ + + D I+LQLWDTAGQERFRS+ SY R+S A++VYDIT+ SF+
Sbjct: 38 TIGIDFLSKTMYLEDRT-IRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQ 96
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
W+ + + + LVG K DL R+VS E + A + +++ ETS+++
Sbjct: 97 TTKWIDDVRTE-RGSDVIIMLVGNKTDLAD---KRQVSIEEGERKAKELNVMFIETSAKA 152
Query: 135 GFQVENAFTAV 145
G+ V+ F V
Sbjct: 153 GYNVKQLFRRV 163
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 17/167 (10%)
Query: 2 VTLLYLYIQIS-DP----TVGVDFFARLVTMR----DGA-----RIKLQLWDTAGQERFR 47
T LY Y +P TVG+DF + V DGA ++ LQLWDTAG ERFR
Sbjct: 25 TTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFR 84
Query: 48 SITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGV 107
S+T +++R++ G LL +D+TS+ SF ++ W + + + P L+G K DL
Sbjct: 85 SLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQ-- 142
Query: 108 PREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154
REV+E +A+ A + I +FETS+ +G VE + + I R +
Sbjct: 143 -REVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKRXE 188
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 17/167 (10%)
Query: 2 VTLLYLYIQIS-DP----TVGVDFFARLVTMR----DGA-----RIKLQLWDTAGQERFR 47
T LY Y +P TVG+DF + V DGA ++ LQLWDTAG ERFR
Sbjct: 25 TTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFR 84
Query: 48 SITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGV 107
S+T +++R++ G LL +D+TS+ SF ++ W + + + P L+G K DL
Sbjct: 85 SLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQ-- 142
Query: 108 PREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154
REV+E +A+ A + I +FETS+ +G VE + + I R +
Sbjct: 143 -REVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKRXE 188
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 79/132 (59%), Gaps = 5/132 (3%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
T+G+DF ++ + + D ++LQLWDTAGQERFRS+ SY R+S A++VYDIT+ SF+
Sbjct: 32 ATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQ 90
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
W+ + + + LVG K DL R+VS E + A + +++ ETS++
Sbjct: 91 QTTKWIDDVRTE-RGSDVIIMLVGNKTDLAD---KRQVSIEEGERKAKELNVMFIETSAK 146
Query: 134 SGFQVENAFTAV 145
+G+ V+ F V
Sbjct: 147 AGYNVKQLFRRV 158
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 78/141 (55%), Gaps = 6/141 (4%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+G+DF + V + +G ++KLQLWDTAGQERFR+IT +YYR + G +LVYD+T +F +
Sbjct: 35 TIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTN 93
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
I W H + LVG K D R V+ + +A A + I E+S+++
Sbjct: 94 IKQWFKTVNEHANDEAQLL-LVGNKSDX----ETRVVTADQGEALAKELGIPFIESSAKN 148
Query: 135 GFQVENAFTAVTQEIYNRVQS 155
V F + + I ++ S
Sbjct: 149 DDNVNEIFFTLAKLIQEKIDS 169
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 78/131 (59%), Gaps = 5/131 (3%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+G+DF ++ + + D ++LQLWDTAGQERFRS+ SY R+S A++VYDIT+ SF
Sbjct: 46 TIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQ 104
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
W+ + R + LVG K DL R+VS E + A + +++ ETS+++
Sbjct: 105 TSKWIDDV-RTERGSDVIIMLVGNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAKA 160
Query: 135 GFQVENAFTAV 145
G+ V+ F V
Sbjct: 161 GYNVKQLFRRV 171
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 78/141 (55%), Gaps = 6/141 (4%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+G+DF + V + +G ++KLQ+WDTAGQERFR+IT +YYR + G +LVYDIT +F +
Sbjct: 35 TIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTN 93
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
I W H + LVG K D R V+ + +A A + I E+S+++
Sbjct: 94 IKQWFKTVNEHANDEAQLL-LVGNKSDX----ETRVVTADQGEALAKELGIPFIESSAKN 148
Query: 135 GFQVENAFTAVTQEIYNRVQS 155
V F + + I ++ S
Sbjct: 149 DDNVNEIFFTLAKLIQEKIDS 169
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 76/137 (55%), Gaps = 5/137 (3%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
+ T+ F + V + D +K ++WDTAGQER+ S+ YYR + A++VYDIT+ +F
Sbjct: 35 ESTIQAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTF 93
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
W+ E +R P+ V AL G K DL R V EA+A+A N +L ETS+
Sbjct: 94 ARAKNWVKELQRQASPN-IVIALAGNKADL---ASKRAVEFQEAQAYADDNSLLFMETSA 149
Query: 133 RSGFQVENAFTAVTQEI 149
++ V F A+ +++
Sbjct: 150 KTAMNVNEIFMAIAKKL 166
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 76/137 (55%), Gaps = 5/137 (3%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
+ T+G F + V + D +K ++WDTAG ER+ S+ YYR + A++VYDIT+ +F
Sbjct: 35 ESTIGAAFLTQTVCL-DDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTF 93
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
W+ E +R P+ V AL G K DL R V EA+A+A N +L ETS+
Sbjct: 94 ARAKNWVKELQRQASPN-IVIALAGNKADL---ASKRAVEFQEAQAYADDNSLLFMETSA 149
Query: 133 RSGFQVENAFTAVTQEI 149
++ V F A+ +++
Sbjct: 150 KTAMNVNEIFMAIAKKL 166
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 77/140 (55%), Gaps = 5/140 (3%)
Query: 10 QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR 69
+ + T+G F + V + D +K ++WDTAG ER+ S+ YYR + A++VYDIT+
Sbjct: 32 EFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNE 90
Query: 70 ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129
SF W+ E +R P+ V AL G K DL R V EA+++A N +L E
Sbjct: 91 ESFARAKNWVKELQRQASPN-IVIALSGNKADLAN---KRAVDFQEAQSYADDNSLLFME 146
Query: 130 TSSRSGFQVENAFTAVTQEI 149
TS+++ V F A+ +++
Sbjct: 147 TSAKTSMNVNEIFMAIAKKL 166
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 83/148 (56%), Gaps = 5/148 (3%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+G+DF ++ + + D I+LQLWDTAG ERFRS+ SY R+S A++VYDIT+ SF+
Sbjct: 45 TIGIDFLSKTMYLEDRT-IRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQ 103
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
W+ + R + LVG K DL R+VS E + A + +++ ETS+++
Sbjct: 104 TTKWIDDV-RTERGSDVIIMLVGNKTDLADK---RQVSIEEGERKAKELNVMFIETSAKA 159
Query: 135 GFQVENAFTAVTQEIYNRVQSGDYKVED 162
G+ V+ F V + + D ED
Sbjct: 160 GYNVKQLFRRVAAALPGMESTQDRSRED 187
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 78/132 (59%), Gaps = 5/132 (3%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
T+G+DF ++ + + D ++LQLWDTAGQERFRS+ SY R+S A++VYDIT+ SF+
Sbjct: 33 ATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQ 91
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
W+ + + + LVG K DL R+++ E + A + ++ ETS++
Sbjct: 92 QTSKWIDDVRTE-RGSDVIIMLVGNKTDLAD---KRQITIEEGEQRAKELSVMFIETSAK 147
Query: 134 SGFQVENAFTAV 145
+G+ V+ F V
Sbjct: 148 TGYNVKQLFRRV 159
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
+PT+G F + V ++ K +WDTAGQERFR++ YYR S A++VYDIT +F
Sbjct: 35 NPTIGASFMTKTVQYQNELH-KFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETF 93
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
+ W+ E ++H P V A+ G K DL REV E +AK +A + ETS+
Sbjct: 94 STLKNWVRELRQH-GPPSIVVAIAGNKCDLTDV---REVMERDAKDYADSIHAIFVETSA 149
Query: 133 RSGFQVENAFTAVTQEI 149
++ + F +++ I
Sbjct: 150 KNAININELFIEISRRI 166
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 73/136 (53%), Gaps = 5/136 (3%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PT+G F + V + K +WDTAGQERF S+ YYR S A++VYDIT + SF
Sbjct: 54 PTIGASFMTKTVPCGNELH-KFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFY 112
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
+ W+ E K H P V A+ G K DL REV +AK +A + ETS++
Sbjct: 113 TLKKWVKELKEH-GPENIVMAIAGNKCDLSDI---REVPLKDAKEYAESIGAIVVETSAK 168
Query: 134 SGFQVENAFTAVTQEI 149
+ +E F ++++I
Sbjct: 169 NAINIEELFQGISRQI 184
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
T+GVDF R + + DG IKLQ+WDTAGQERFR+IT SYYR + G ++VYD+T + SF
Sbjct: 29 STIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 87
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDL 102
++ W+ E R+ + LVG K DL
Sbjct: 88 NVKQWLQEIDRYASENVNKL-LVGNKCDL 115
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 83/148 (56%), Gaps = 5/148 (3%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+G+DF ++ + + D ++LQLWDTAG ERFRS+ SY R+S A++VYDIT+ SF+
Sbjct: 48 TIGIDFLSKTMYLEDRT-VRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQ 106
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
W+ + R + LVG K DL R+VS E + A + +++ ETS+++
Sbjct: 107 TTKWIDDV-RTERGSDVIIMLVGNKTDLADK---RQVSIEEGERKAKELNVMFIETSAKA 162
Query: 135 GFQVENAFTAVTQEIYNRVQSGDYKVED 162
G+ V+ F V + + D ED
Sbjct: 163 GYNVKQLFRRVAAALPGMESTQDRSRED 190
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 83/148 (56%), Gaps = 5/148 (3%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+G+DF ++ + + D ++LQLWDTAG ERFRS+ SY R+S A++VYDIT+ SF+
Sbjct: 38 TIGIDFLSKTMYLEDRT-VRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQ 96
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
W+ + R + LVG K DL R+VS E + A + +++ ETS+++
Sbjct: 97 TTKWIDDV-RTERGSDVIIMLVGNKTDLAD---KRQVSIEEGERKAKELNVMFIETSAKA 152
Query: 135 GFQVENAFTAVTQEIYNRVQSGDYKVED 162
G+ V+ F V + + D ED
Sbjct: 153 GYNVKQLFRRVAAALPGMESTQDRSRED 180
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 88/153 (57%), Gaps = 8/153 (5%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARI-KLQLWDTAGQERFRSITKSYYRNSVGALLVYDI 66
Y Q T+G DF + VT+ DG ++ +Q+WDTAGQERF+S+ ++YR + +LVYD+
Sbjct: 33 YSQQYKATIGADFLTKEVTV-DGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDV 91
Query: 67 TSRASFEHIPVWMMEAKRHIEPHRP---VFALVGCKLDLLQSGVPREVSEAEAKAFA-SQ 122
T+ +SFE+I W E H + P F ++G K+D +S + VSE A+ A S
Sbjct: 92 TNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES--KKIVSEKSAQELAKSL 149
Query: 123 NDILHFETSSRSGFQVENAFTAVTQEIYNRVQS 155
DI F TS+++ V+ AF + + + Q+
Sbjct: 150 GDIPLFLTSAKNAINVDTAFEEIARSALQQNQA 182
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 5/129 (3%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
TVG+DF + + R+ RIKLQ+WDTAGQER+R+IT +YYR ++G +L+YDIT+ SF
Sbjct: 36 STVGIDFKVKTI-YRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFN 94
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
+ W + K + + V LVG K D+ R VS + A FE S++
Sbjct: 95 AVQDWSTQIKTYSWDNAQVL-LVGNKCDMED---ERVVSSERGRQLADHLGFEFFEASAK 150
Query: 134 SGFQVENAF 142
V+ F
Sbjct: 151 DNINVKQTF 159
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
TVG+DF + V R R+KLQ+WDTAGQER+R+IT +YYR ++G +L+YDIT+ SF
Sbjct: 54 STVGIDFKVKTV-YRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFN 112
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
+ W + K + + V LVG K D+ + R V + + A Q FE S++
Sbjct: 113 AVQDWATQIKTYSWDNAQVI-LVGNKCDMEE---ERVVPTEKGQLLAEQLGFDFFEASAK 168
Query: 134 SGFQVENAFTAVTQEIYNRV 153
V AF + I +++
Sbjct: 169 ENISVRQAFERLVDAICDKM 188
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 74/129 (57%), Gaps = 5/129 (3%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
T+G F + + + G R+ L +WDTAGQERF ++ YYR+S GA+LVYDIT SF+
Sbjct: 37 TTLGASFLTKKLNI-GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQ 95
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
+ W+ E ++ + + +VG K+DL + R VS EA+++A H+ TS++
Sbjct: 96 KVKNWVKELRKML-GNEICLCIVGNKIDLEK---ERHVSIQEAESYAESVGAKHYHTSAK 151
Query: 134 SGFQVENAF 142
+E F
Sbjct: 152 QNKGIEELF 160
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 74/137 (54%), Gaps = 5/137 (3%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
+PT+G F + V ++ K +WDTAG ERFR++ YYR S A++VYDIT +F
Sbjct: 36 NPTIGASFMTKTVQYQNELH-KFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETF 94
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
+ W+ E ++H P V A+ G K DL REV E +AK +A + ETS+
Sbjct: 95 STLKNWVRELRQH-GPPSIVVAIAGNKCDLTDV---REVMERDAKDYADSIHAIFVETSA 150
Query: 133 RSGFQVENAFTAVTQEI 149
++ + F +++ I
Sbjct: 151 KNAININELFIEISRRI 167
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 79/147 (53%), Gaps = 17/147 (11%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GVDF + + + DG R LQLWDTAGQERFRSI KSY+R + G LL+YD+T SF +
Sbjct: 60 TLGVDFQMKTLIV-DGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLN 118
Query: 75 IPVW--MMEAKRHIEPHRPVFALVGCKLDLL-------QSGVPREVSEAEAKAFASQNDI 125
I W M+E H P+ LVG K D+ Q VP E A + +
Sbjct: 119 IREWVDMIEDAAH--ETVPIM-LVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGA---- 171
Query: 126 LHFETSSRSGFQVENAFTAVTQEIYNR 152
L ETS++ G + A + +E+ R
Sbjct: 172 LFCETSAKDGSNIVEAVLHLAREVKKR 198
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 80/137 (58%), Gaps = 9/137 (6%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+G DF + V M D + +Q+WDTAGQERF+S+ ++YR + +LV+D+T+ +F+
Sbjct: 40 TIGADFLTKEV-MVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKT 98
Query: 75 IPVWMMEAKRHIEPHRP---VFALVGCKLDLLQSGVPREVSEAEAKAFA-SQNDILHFET 130
+ W E P P F ++G K+DL R+V+ A+A+ S+N+I +FET
Sbjct: 99 LDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN----RQVATKRAQAWCYSKNNIPYFET 154
Query: 131 SSRSGFQVENAFTAVTQ 147
S++ VE AF + +
Sbjct: 155 SAKEAINVEQAFQTIAR 171
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 80/137 (58%), Gaps = 9/137 (6%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+G DF + V M D + +Q+WDTAGQERF+S+ ++YR + +LV+D+T+ +F+
Sbjct: 40 TIGADFLTKEV-MVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKT 98
Query: 75 IPVWMMEAKRHIEPHRP---VFALVGCKLDLLQSGVPREVSEAEAKAFA-SQNDILHFET 130
+ W E P P F ++G K+DL R+V+ A+A+ S+N+I +FET
Sbjct: 99 LDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN----RQVATKRAQAWCYSKNNIPYFET 154
Query: 131 SSRSGFQVENAFTAVTQ 147
S++ VE AF + +
Sbjct: 155 SAKEAINVEQAFQTIAR 171
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 71/128 (55%), Gaps = 5/128 (3%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
TVG+DF + V D RIKLQ+WDTAGQER+R+IT +YYR ++G LL+YDI ++ SF
Sbjct: 54 TVGIDFKVKTVYRHD-KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAA 112
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
+ W + K + + V LVG K DL R V + + A FE S++
Sbjct: 113 VQDWATQIKTYSWDNAQVI-LVGNKCDLEDE---RVVPAEDGRRLADDLGFEFFEASAKE 168
Query: 135 GFQVENAF 142
V+ F
Sbjct: 169 NINVKQVF 176
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+G DF + V M D + +Q+WDTAGQERF+S+ ++YR + +LV+D+T+ +F+
Sbjct: 40 TIGADFLTKEV-MVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKT 98
Query: 75 IPVWMMEAKRHIEPHRP---VFALVGCKLDLLQSGVPREVSEAEAKAFA-SQNDILHFET 130
+ W E P P F ++G K+D R+V+ A+A+ S+N+I +FET
Sbjct: 99 LDSWRDEFLIQASPRDPENFPFVVLGNKIDFEN----RQVATKRAQAWCYSKNNIPYFET 154
Query: 131 SSRSGFQVENAFTAVTQ 147
S++ VE AF + +
Sbjct: 155 SAKEAINVEQAFQTIAR 171
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 5/129 (3%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
T+ F + + + G R+ L +WDTAGQERF ++ YYR+S GA+LVYDIT SF+
Sbjct: 37 TTLQASFLTKKLNI-GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQ 95
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
+ W+ E ++ + + +VG K+DL + R VS EA+++A H+ TS++
Sbjct: 96 KVKNWVKELRKML-GNEICLCIVGNKIDLEK---ERHVSIQEAESYAESVGAKHYHTSAK 151
Query: 134 SGFQVENAF 142
+E F
Sbjct: 152 QNKGIEELF 160
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 73/128 (57%), Gaps = 5/128 (3%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+ F + + + G R+ L +WDTAGQERF ++ YYR+S GA+LVYDIT SF+
Sbjct: 52 TLQASFLTKKLNI-GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQK 110
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
+ W+ E ++ + + +VG K+DL + R VS EA+++A H+ TS++
Sbjct: 111 VKNWVKELRKML-GNEICLCIVGNKIDLEK---ERHVSIQEAESYAESVGAKHYHTSAKQ 166
Query: 135 GFQVENAF 142
+E F
Sbjct: 167 NKGIEELF 174
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 18/150 (12%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+G DF + V M D + +Q+WDTAG ERF+S+ ++YR + +LV+D+T+ +F+
Sbjct: 40 TIGADFLTKEV-MVDDRLVTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKT 98
Query: 75 IPVWMMEAKRHIEPHRP---VFALVGCKLDLLQSGVPREVSEAEAKAFA-SQNDILHFET 130
+ W E P P F ++G K+DL R+V+ A+A+ S+N+I +FET
Sbjct: 99 LDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN----RQVATKRAQAWCYSKNNIPYFET 154
Query: 131 SSRSGFQVENAFTAVTQ---------EIYN 151
S++ VE AF + + E+YN
Sbjct: 155 SAKEAINVEQAFQTIARNALKQETEVELYN 184
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 68/128 (53%), Gaps = 5/128 (3%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
TVG+DF + + R+ RIKLQ+WDTAG ER+R+IT +YYR + G +L YDIT+ SF
Sbjct: 40 TVGIDFKVKTI-YRNDKRIKLQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNA 98
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
+ W + K + + V LVG K D R VS + A FE S++
Sbjct: 99 VQDWSTQIKTYSWDNAQVL-LVGNKCDXEDE---RVVSSERGRQLADHLGFEFFEASAKD 154
Query: 135 GFQVENAF 142
V+ F
Sbjct: 155 NINVKQTF 162
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 77/139 (55%), Gaps = 9/139 (6%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GV+F + + + DG + +Q+WDTAGQERFRS+ +YR S LL + + SF++
Sbjct: 39 TIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN 97
Query: 75 IPVWMMEAKRHI---EPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-DILHFET 130
+ W E + EP F ++G K+D+ + R+VS EA+A+ N D +FET
Sbjct: 98 LSNWKKEFIYYADVKEPESFPFVILGNKIDISE----RQVSTEEAQAWCRDNGDYPYFET 153
Query: 131 SSRSGFQVENAFTAVTQEI 149
S++ V AF + +
Sbjct: 154 SAKDATNVAAAFEEAVRRV 172
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 77/139 (55%), Gaps = 9/139 (6%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GV+F + + + DG + +Q+WDTAGQERFRS+ +YR S LL + + SF++
Sbjct: 41 TIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN 99
Query: 75 IPVWMMEAKRHI---EPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-DILHFET 130
+ W E + EP F ++G K+D+ + R+VS EA+A+ N D +FET
Sbjct: 100 LSNWKKEFIYYADVKEPESFPFVILGNKIDISE----RQVSTEEAQAWCRDNGDYPYFET 155
Query: 131 SSRSGFQVENAFTAVTQEI 149
S++ V AF + +
Sbjct: 156 SAKDATNVAAAFEEAVRRV 174
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 9/139 (6%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GV+F + + + DG + +Q+WDTAGQERFRS+ +YR S LL + + SF++
Sbjct: 43 TIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN 101
Query: 75 IPVWMMEAKRHI---EPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-DILHFET 130
+ W E + EP F ++G K D+ + R+VS EA+A+ N D +FET
Sbjct: 102 LSNWKKEFIYYADVKEPESFPFVILGNKTDIKE----RQVSTEEAQAWCKDNGDYPYFET 157
Query: 131 SSRSGFQVENAFTAVTQEI 149
S++ V AF + I
Sbjct: 158 SAKDSTNVAAAFEEAVRRI 176
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
T+GVDF R + + D ++L LWDTAGQE F +ITK+YYR + +LV+ T R SFE
Sbjct: 36 KTIGVDFLERQIQVND-EDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFE 94
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
I W K E ALV K+DLL + EA+ A + + + TS +
Sbjct: 95 AISSW--REKVVAEVGDIPTALVQNKIDLLDDSC---IKNEEAEGLAKRLKLRFYRTSVK 149
Query: 134 SGFQVENAFTAVTQE 148
V F + ++
Sbjct: 150 EDLNVSEVFKYLAEK 164
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 9/139 (6%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GV+F R + + DG + LQ+WDTAGQERF+S+ +YR + LL + + R SFE+
Sbjct: 39 TIGVEFLNRDLEV-DGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFEN 97
Query: 75 IPVWMMEAKRHI---EPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-DILHFET 130
+ W E + +P F ++G K+D R+V+ EA+ + +N D + ET
Sbjct: 98 LGNWQKEFIYYADVKDPEHFPFVVLGNKVD----KEDRQVTTEEAQTWCMENGDYPYLET 153
Query: 131 SSRSGFQVENAFTAVTQEI 149
S++ V AF +++
Sbjct: 154 SAKDDTNVTVAFEEAVRQV 172
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 7/123 (5%)
Query: 31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHR 90
IK +WDTAGQER+ SI YYR + A++V+DI++ + + W+ + K
Sbjct: 91 CNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKI---SSN 147
Query: 91 PVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY 150
+ LV K+D +V E + +A N++L +TS+++G ++N F + +EIY
Sbjct: 148 YIIILVANKID----KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY 203
Query: 151 NRV 153
+
Sbjct: 204 KNI 206
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 5/137 (3%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+G+DFF R +T+ + LQ+WD GQ + Y + G LLVYDIT+ SFE+
Sbjct: 38 TIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFEN 97
Query: 75 IPVWMMEAKRHIEPH--RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
+ W K+ E +P+ ALVG K+DL R + + F +N S+
Sbjct: 98 LEDWYTVVKKVSEESETQPLVALVGNKIDLEHM---RTIKPEKHLRFCQENGFSSHFVSA 154
Query: 133 RSGFQVENAFTAVTQEI 149
++G V F V EI
Sbjct: 155 KTGDSVFLCFQKVAAEI 171
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 77/136 (56%), Gaps = 8/136 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PT+GV+ LV + IK +WDTAGQE+F + YY + A++++D+TSR +++
Sbjct: 41 PTLGVEVHP-LVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYK 99
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
++P W + R E + P+ L G K+D+ V +A++ F + ++ +++ S++
Sbjct: 100 NVPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAK 152
Query: 134 SGFQVENAFTAVTQEI 149
S + E F + +++
Sbjct: 153 SNYNFEKPFLWLARKL 168
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 77/136 (56%), Gaps = 8/136 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PT+GV+ LV + IK +WDTAGQE+F + YY + A++++D+TSR +++
Sbjct: 41 PTLGVEVHP-LVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYK 99
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
++P W + R E + P+ L G K+D+ V +A++ F + ++ +++ S++
Sbjct: 100 NVPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAK 152
Query: 134 SGFQVENAFTAVTQEI 149
S + E F + +++
Sbjct: 153 SNYNFEKPFLWLARKL 168
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 8/154 (5%)
Query: 2 VTLLYLY---IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
+TL ++Y ++ +PT + ++V DG +++ + DTAGQE + +I +Y+R+
Sbjct: 30 LTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGQEDYAAIRDNYFRSGE 87
Query: 59 GALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKA 118
G L V+ IT SF + + R E F LVG K DL R+VS EAK
Sbjct: 88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED---KRQVSVEEAKN 144
Query: 119 FASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152
A Q ++ + ETS+++ V+ F + +EI R
Sbjct: 145 RAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 178
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 8/154 (5%)
Query: 2 VTLLYLY---IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
+TL ++Y ++ +PT + ++V DG +++ + DTAGQE + +I +Y+R+
Sbjct: 34 LTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGQEDYAAIRDNYFRSGE 91
Query: 59 GALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKA 118
G L V+ IT SF + + R E F LVG K DL R+VS EAK
Sbjct: 92 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED---KRQVSVEEAKN 148
Query: 119 FASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152
A Q ++ + ETS+++ V+ F + +EI R
Sbjct: 149 RAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 8/154 (5%)
Query: 2 VTLLYLY---IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
+TL ++Y ++ +PT + ++V DG +++ + DTAGQE + +I +Y+R+
Sbjct: 22 LTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGQEDYAAIRDNYFRSGE 79
Query: 59 GALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKA 118
G L V+ IT SF + + R E F LVG K DL R+VS EAK
Sbjct: 80 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED---KRQVSVEEAKN 136
Query: 119 FASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152
A Q ++ + ETS+++ V+ F + +EI R
Sbjct: 137 RAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 8/154 (5%)
Query: 2 VTLLYLY---IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
+TL ++Y ++ +PT + ++V DG +++ + DTAGQE + +I +Y+R+
Sbjct: 20 LTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGQEDYAAIRDNYFRSGE 77
Query: 59 GALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKA 118
G L V+ IT SF + + R E F LVG K DL R+VS EAK
Sbjct: 78 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED---KRQVSVEEAKN 134
Query: 119 FASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152
A Q ++ + ETS+++ V+ F + +EI R
Sbjct: 135 RADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GV+ LV + IK +WDTAGQE+F + YY + A++++D+TSR ++++
Sbjct: 42 TLGVEVHP-LVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 100
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
+P W + R E + P+ L G K+D+ V +A++ F + ++ +++ S++S
Sbjct: 101 VPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAKS 153
Query: 135 GFQVENAFTAVTQEI 149
+ E F + +++
Sbjct: 154 NYNFEKPFLWLARKL 168
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GV+ LV + IK +WDTAGQE+F + YY + A++++D+TSR ++++
Sbjct: 35 TLGVEVHP-LVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 93
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
+P W + R E + P+ L G K+D+ V +A++ F + ++ +++ S++S
Sbjct: 94 VPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAKS 146
Query: 135 GFQVENAFTAVTQEI 149
+ E F + +++
Sbjct: 147 NYNFEKPFLWLARKL 161
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GV+ LV + IK +WDTAGQE+F + YY + A++++D+TSR ++++
Sbjct: 42 TLGVEVHP-LVFHTNRGPIKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKN 100
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
+P W + R E + P+ L G K+D+ V +A++ F + ++ +++ S++S
Sbjct: 101 VPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAKS 153
Query: 135 GFQVENAFTAVTQEI 149
+ E F + +++
Sbjct: 154 NYNFEKPFLWLARKL 168
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GV+ LV + IK +WDTAGQE+F + YY + A++++D+TSR ++++
Sbjct: 42 TLGVEVHP-LVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 100
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
+P W + R E + P+ L G K+D+ V +A++ F + ++ +++ S++S
Sbjct: 101 VPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAKS 153
Query: 135 GFQVENAFTAVTQEI 149
+ E F + +++
Sbjct: 154 NYNFEKPFLWLARKL 168
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GV+ LV + IK +WDTAGQE+F + YY + A++++D+TSR ++++
Sbjct: 42 TLGVEVHP-LVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 100
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
+P W + R E + P+ L G K+D+ V +A++ F + ++ +++ S++S
Sbjct: 101 VPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAKS 153
Query: 135 GFQVENAFTAVTQEI 149
+ E F + +++
Sbjct: 154 NYNFEKPFLWLARKL 168
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GV+ LV + IK +WDTAGQE+F + YY + A++++D+TSR ++++
Sbjct: 47 TLGVEVHP-LVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 105
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
+P W + R E + P+ L G K+D+ V +A++ F + ++ +++ S++S
Sbjct: 106 VPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAKS 158
Query: 135 GFQVENAFTAVTQEI 149
+ E F + +++
Sbjct: 159 NYNFEKPFLWLARKL 173
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GV+ LV + IK +WDTAGQE+F + YY + A++++D+TSR ++++
Sbjct: 47 TLGVEVHP-LVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 105
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
+P W + R E + P+ L G K+D+ V +A++ F + ++ +++ S++S
Sbjct: 106 VPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAKS 158
Query: 135 GFQVENAFTAVTQEI 149
+ E F + +++
Sbjct: 159 NYNFEKPFLWLARKL 173
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 75/135 (55%), Gaps = 8/135 (5%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GV+ LV + IK +WDTAGQE+F + YY + A++ +D+TSR ++++
Sbjct: 42 TLGVEVHP-LVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKN 100
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
+P W + R E + P+ L G K+D+ V +A++ F + ++ +++ S++S
Sbjct: 101 VPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAKS 153
Query: 135 GFQVENAFTAVTQEI 149
+ E F + +++
Sbjct: 154 NYNFEKPFLWLARKL 168
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GV+ LV + IK +WDTAGQE++ + YY + A++++D+TSR ++++
Sbjct: 42 TLGVEVHP-LVFHTNRGPIKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKN 100
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
+P W + R E + P+ L G K+D+ V +A++ F + ++ +++ S++S
Sbjct: 101 VPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAKS 153
Query: 135 GFQVENAFTAVTQEI 149
+ E F + +++
Sbjct: 154 NYNFEKPFLWLARKL 168
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 76/140 (54%), Gaps = 8/140 (5%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GV+ L + IK +WDTAG E+F + YY N+ A++++D+TSR ++++
Sbjct: 44 TIGVEVHP-LSFYTNFGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKN 102
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
+P W + R E + P+ L G K+D+ + V +A+ F + ++ +++ S++S
Sbjct: 103 VPNWHRDLVRVCE-NIPI-VLCGNKVDVKERKV-----KAKTITFHRKKNLQYYDISAKS 155
Query: 135 GFQVENAFTAVTQEIYNRVQ 154
+ E F + +++ Q
Sbjct: 156 NYNFEKPFLWLARKLAGNPQ 175
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+++ DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I
Sbjct: 28 FVEKYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAIN 85
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
+ SFE I + + KR + LVG K DL R V +A+ A I +
Sbjct: 86 NTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPY 141
Query: 128 FETSSRSGFQVENAFTAVTQEI 149
ETS+++ VE+AF + +EI
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 76/140 (54%), Gaps = 8/140 (5%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GV+ L + IK +WDTAG E+F + YY N+ A++++D+TSR ++++
Sbjct: 36 TIGVEVHP-LSFYTNFGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKN 94
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
+P W + R E + P+ L G K+D+ + V +A+ F + ++ +++ S++S
Sbjct: 95 VPNWHRDLVRVCE-NIPI-VLCGNKVDVKERKV-----KAKTITFHRKKNLQYYDISAKS 147
Query: 135 GFQVENAFTAVTQEIYNRVQ 154
+ E F + +++ Q
Sbjct: 148 NYNFEKPFLWLARKLAGNPQ 167
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 76/140 (54%), Gaps = 8/140 (5%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GV+ L + IK +WDTAG E+F + YY N+ A++++D+TSR ++++
Sbjct: 37 TIGVEVHP-LSFYTNFGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKN 95
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
+P W + R E + P+ L G K+D+ + V +A+ F + ++ +++ S++S
Sbjct: 96 VPNWHRDLVRVCE-NIPI-VLCGNKVDVKERKV-----KAKTITFHRKKNLQYYDISAKS 148
Query: 135 GFQVENAFTAVTQEIYNRVQ 154
+ E F + +++ Q
Sbjct: 149 NYNFEKPFLWLARKLAGNPQ 168
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 8/154 (5%)
Query: 2 VTLLYLY---IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
+TL ++Y ++ +PT + ++V DG +++ + DTAG E + +I +Y+R+
Sbjct: 22 LTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGLEDYAAIRDNYFRSGE 79
Query: 59 GALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKA 118
G L V+ IT SF + + R E F LVG K DL R+VS EAK
Sbjct: 80 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED---KRQVSVEEAKN 136
Query: 119 FASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152
A Q ++ + ETS+++ V+ F + +EI R
Sbjct: 137 RAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 40 DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 97
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 98 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 153
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 154 KTRQGVEDAFYTLVREI 170
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 5/137 (3%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ D + ++ ++ DG +L + DTAGQE F ++ + Y R G LLV+ I R SF
Sbjct: 39 DPTIE-DSYTKICSV-DGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSF 96
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
+ + R + LVG K DL R+V +EA AF + + + +FE S+
Sbjct: 97 NEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ---RQVPRSEASAFGASHHVAYFEASA 153
Query: 133 RSGFQVENAFTAVTQEI 149
+ V+ AF + + +
Sbjct: 154 KLRLNVDEAFEQLVRAV 170
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEESYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 38 DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 95
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 96 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 151
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 152 KTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 38 DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 95
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 96 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 151
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 152 KTRQGVEDAFYTLVREI 168
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 75/135 (55%), Gaps = 8/135 (5%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GV+ LV + IK +WDTAG E+F + YY + A++++D+TSR ++++
Sbjct: 38 TLGVEVHP-LVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 96
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
+P W + R E + P+ L G K+D+ V +A++ F + ++ +++ S++S
Sbjct: 97 VPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAKS 149
Query: 135 GFQVENAFTAVTQEI 149
+ E F + +++
Sbjct: 150 NYNFEKPFLWLARKL 164
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AGRTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 75/135 (55%), Gaps = 8/135 (5%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GV+ LV + IK +WDTAG E+F + YY + A++++D+TSR ++++
Sbjct: 44 TLGVEVHP-LVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 102
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
+P W + R E + P+ L G K+D+ V +A++ F + ++ +++ S++S
Sbjct: 103 VPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAKS 155
Query: 135 GFQVENAFTAVTQEI 149
+ E F + +++
Sbjct: 156 NYNFEKPFLWLARKL 170
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 75/135 (55%), Gaps = 8/135 (5%)
Query: 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
T+GV+ LV + IK +WDTAG E+F + YY + A++++D+TSR ++++
Sbjct: 42 TLGVEVHP-LVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 100
Query: 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
+P W + R E + P+ L G K+D+ V +A++ F + ++ +++ S++S
Sbjct: 101 VPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAKS 153
Query: 135 GFQVENAFTAVTQEI 149
+ E F + +++
Sbjct: 154 NYNFEKPFLWLARKL 168
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 6/142 (4%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
++ DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I
Sbjct: 28 FVDECDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAIN 85
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
+ SFE I + + KR + LVG K DL R V +A+ A I +
Sbjct: 86 NTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL----AARTVESRQAQDLARSYGIPY 141
Query: 128 FETSSRSGFQVENAFTAVTQEI 149
ETS+++ VE+AF + +EI
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKSDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG + DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNRCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ D + + + D A +L + DTAGQE F ++ + Y R G LLV+ +T R SF
Sbjct: 35 DPTIE-DSYTKQCVIDDRA-ARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSF 92
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + R + L+G K DL R+V++ E + A Q + + E S+
Sbjct: 93 EEIYKFQRQILRVKDRDEFPMILIGNKADL---DHQRQVTQEEGQQLARQLKVTYMEASA 149
Query: 133 RSGFQVENAF 142
+ V+ AF
Sbjct: 150 KIRMNVDQAF 159
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DP++ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 39 DPSIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 96
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 97 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 152
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 153 KTRQGVEDAFYTLVREI 169
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DT GQE + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DP++ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 33 DPSIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DT GQE + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAG+E + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 66/136 (48%), Gaps = 6/136 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQE 148
++ VE+AF + +E
Sbjct: 147 KTRQGVEDAFYTLVRE 162
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAG E + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAGQE ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV +F A +V DG+ + L LWDTAGQE + + YR + LL + + S+AS+E
Sbjct: 37 PTVFDNFSANVVV--DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYE 94
Query: 74 HI-PVWMMEAKRHIEPHRPVFALVGCKLDL 102
+I W+ E K H P P+ LVG KLDL
Sbjct: 95 NIHKKWLPELK-HYAPGIPI-VLVGTKLDL 122
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 51 DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSF 108
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
I ++ + KR + LVG K DL R V +A A I ETS+
Sbjct: 109 ADINLYREQIKRVKDSDDVPMVLVGNKCDL----PTRTVDTKQAHELAKSYGIPFIETSA 164
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 165 KTRQGVEDAFYTLVREI 181
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAG E + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTA QE + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKXDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTA QE + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKXDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAG E + ++ Y R G L V+ I + SF
Sbjct: 38 DPTIEDSYRKQVVI--DGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSF 95
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 96 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 151
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 152 KTRQGVEDAFYTLVREI 168
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAG E + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAG E + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 34 DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 91
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I ETS+
Sbjct: 92 EDIHHYREQIKRVKDSEDVPMVLVGNKCDL----PSRTVDTKQAQDLARSYGIPFIETSA 147
Query: 133 RSGFQVENAFTAVTQEI 149
++ V++AF + +EI
Sbjct: 148 KTRQGVDDAFYTLVREI 164
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAG E + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV +F A +V DG + L LWDTAGQE + + YR + +L + + S+AS+E
Sbjct: 37 PTVFDNFSANVVV--DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 94
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ---------SGVPREVSEAE--AKAFASQ 122
++ + RH P P+ LVG KLDL VP ++ E K S
Sbjct: 95 NVAKKWIPELRHYAPGVPII-LVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSP 153
Query: 123 NDILHFETSSRSGFQVENAFTAVTQEI 149
++ E SS++ V+ F A + +
Sbjct: 154 ---IYIECSSKTQQNVKAVFDAAIKVV 177
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAG E + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSYRKQVVI--DGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 34 DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 91
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I ETS+
Sbjct: 92 EDIHHYREQIKRVKDSEDVPMVLVGNKSDL----PSRTVDTKQAQDLARSYGIPFIETSA 147
Query: 133 RSGFQVENAFTAVTQEI 149
++ V++AF + +EI
Sbjct: 148 KTRQGVDDAFYTLVREI 164
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 34 DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 91
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I ETS+
Sbjct: 92 EDIHHYREQIKRVKDSEDVPMVLVGNKSDL----PSRTVDTKQAQDLARSYGIPFIETSA 147
Query: 133 RSGFQVENAFTAVTQEI 149
++ V++AF + +EI
Sbjct: 148 KTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 34 DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 91
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I ETS+
Sbjct: 92 EDIHHYREQIKRVKDSEDVPMVLVGNKSDL----PSRTVDTKQAQDLARSYGIPFIETSA 147
Query: 133 RSGFQVENAFTAVTQEI 149
++ V++AF + +EI
Sbjct: 148 KTRQGVDDAFYTLVREI 164
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV +F A +V +GA + L LWDTAGQE + + YR + +L + + S+AS+E
Sbjct: 39 PTVFDNFSANVVV--NGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 96
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDL 102
++ + +H P P+ LVG KLDL
Sbjct: 97 NVSKKWIPELKHYAPGVPI-VLVGTKLDL 124
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 5/127 (3%)
Query: 7 LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDI 66
+++ DPT+ + T D L + DTAGQE F ++ + Y R G L+VY +
Sbjct: 42 IFVDDYDPTIEDSYLKH--TEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSV 99
Query: 67 TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126
T +ASFEH+ + R + LV K+DL+ R+V+ + K A++ +I
Sbjct: 100 TDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL---RKVTRDQGKEMATKYNIP 156
Query: 127 HFETSSR 133
+ ETS++
Sbjct: 157 YIETSAK 163
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 5/127 (3%)
Query: 7 LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDI 66
+++ DPT+ + R T D L + DTAGQE F ++ + Y R G L+VY +
Sbjct: 42 IFVDEYDPTIEDSY--RKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSV 99
Query: 67 TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126
T +ASFEH+ + R + LV K+DL+ R+V+ + K A++ +I
Sbjct: 100 TDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL---RKVTRDQGKEMATKYNIP 156
Query: 127 HFETSSR 133
+ ETS++
Sbjct: 157 YIETSAK 163
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + ++V DG L + DTAG E + ++ Y R G L V+ I + SF
Sbjct: 51 DPTIEDSYRKQVVI--DGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSF 108
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I ETS+
Sbjct: 109 EDIHHYREQIKRVKDSEDVPMVLVGNKCDL----PSRTVDTKQAQDLARSYGIPFIETSA 164
Query: 133 RSGFQVENAFTAVTQEI 149
++ V++AF + +EI
Sbjct: 165 KTRQGVDDAFYTLVREI 181
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 5/127 (3%)
Query: 7 LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDI 66
+++ DPT+ + T D L + DTAGQE F ++ + Y R G L+VY +
Sbjct: 37 IFVPDYDPTIEDSYLKH--TEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSV 94
Query: 67 TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126
T +ASFEH+ + R + LV K+DL+ R+V+ + K A++ +I
Sbjct: 95 TDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL---RKVTRDQGKEMATKYNIP 151
Query: 127 HFETSSR 133
+ ETS++
Sbjct: 152 YIETSAK 158
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 5/127 (3%)
Query: 7 LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDI 66
+++ DPT+ + T D L + DTAGQE F ++ + Y R G L+VY +
Sbjct: 42 IFVPEYDPTIEDSYLKH--TEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSV 99
Query: 67 TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126
T +ASFEH+ + R + LV K+DL+ R+V+ + K A++ +I
Sbjct: 100 TDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL---RKVTRDQGKEMATKYNIP 156
Query: 127 HFETSSR 133
+ ETS++
Sbjct: 157 YIETSAK 163
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 72/145 (49%), Gaps = 15/145 (10%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + DG R++L LWDTAGQE + + Y +S L+ + I S E
Sbjct: 41 PTVFENYVADVEV--DGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLE 98
Query: 74 HI-PVWMMEAKRHIEPHRPVFALVGCKLDL---------LQSGVPREVSEAEAKAFASQ- 122
++ W+ E H P+ LVGCK+DL L+ + V+ E ++ A Q
Sbjct: 99 NVQEKWIAEV-LHFCQGVPII-LVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQI 156
Query: 123 NDILHFETSSRSGFQVENAFTAVTQ 147
++E S+++G+ V F A T+
Sbjct: 157 GATGYYECSAKTGYGVREVFEAATR 181
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M DG + L LWDTAGQE + + Y + L+ + + S ASFE
Sbjct: 35 PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 92
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
++ W E + H PH P+ LVG KLDL
Sbjct: 93 NVRAKWYPEVRHHC-PHTPIL-LVGTKLDL 120
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M DG + L LWDTAGQE + + Y + L+ + + S ASFE
Sbjct: 34 PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
++ W E + H PH P+ LVG KLDL
Sbjct: 92 NVRAKWYPEVRHHC-PHTPIL-LVGTKLDL 119
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M DG + L LWDTAGQE + + Y + L+ + + S ASFE
Sbjct: 35 PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 92
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
++ W E + H PH P+ LVG KLDL
Sbjct: 93 NVRAKWYPEVRHHC-PHTPIL-LVGTKLDL 120
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 9/158 (5%)
Query: 2 VTLLYLY---IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
+TL ++Y ++ +PT + ++V DG +++ + DTAG E + +I +Y+R+
Sbjct: 23 LTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGLEDYAAIRDNYFRSGE 80
Query: 59 GALLVYDITSRASFEHIPVWMMEAKR-HIEPHRPVFALVGCKLDLLQSGVPREVSEAEAK 117
G LLV+ IT SF + + R E + +VG K DL + R+V EA+
Sbjct: 81 GFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER---RQVPVEEAR 137
Query: 118 AFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQS 155
+ A + + + ETS+++ V+ F + +EI + S
Sbjct: 138 SKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMS 175
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 9/158 (5%)
Query: 2 VTLLYLY---IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
+TL ++Y ++ +PT + ++V DG +++ + DTAG E + +I +Y+R+
Sbjct: 19 LTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGLEDYAAIRDNYFRSGE 76
Query: 59 GALLVYDITSRASFEHIPVWMMEAKR-HIEPHRPVFALVGCKLDLLQSGVPREVSEAEAK 117
G LLV+ IT SF + + R E + +VG K DL + R+V EA+
Sbjct: 77 GFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER---RQVPVEEAR 133
Query: 118 AFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQS 155
+ A + + + ETS+++ V+ F + +EI + S
Sbjct: 134 SKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMS 171
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M DG + L LWDTAGQE + + Y + +L+ + + S ASFE
Sbjct: 36 PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFE 93
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
++ W E + H P+ P+ LVG KLDL
Sbjct: 94 NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 121
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M DG + L LWDTAGQE + + Y + +L+ + + S ASFE
Sbjct: 34 PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFE 91
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
++ W E + H P+ P+ LVG KLDL
Sbjct: 92 NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 119
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M DG + L LWDTAGQE + + Y + +L+ + + S ASFE
Sbjct: 38 PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFE 95
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
++ W E + H P+ P+ LVG KLDL
Sbjct: 96 NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 123
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV +F A + DG + L LWDTAGQE + + YR + +L + + S+AS+E
Sbjct: 40 PTVFDNFSANVAV--DGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYE 97
Query: 74 HI-PVWMMEAKRHIEPHRPVFALVGCKLDL 102
++ WM E +R P+ P+ LVG KLDL
Sbjct: 98 NVLKKWMPELRR-FAPNVPI-VLVGTKLDL 125
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M DG + L LWDTAGQE + + Y + +L+ + + S ASFE
Sbjct: 34 PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFE 91
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
++ W E + H P+ P+ LVG KLDL
Sbjct: 92 NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 119
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M DG + L LWDTAGQE + + Y + L+ + + S ASFE
Sbjct: 41 PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 98
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
++ W E + H P+ P+ LVG KLDL
Sbjct: 99 NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 126
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + DG +++L LWDTAGQE + + Y ++ L+ + I S S E
Sbjct: 56 PTVFENYIADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 113
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDLLQ 104
+IP W E K H P+ P+ LVG K DL Q
Sbjct: 114 NIPEKWTPEVK-HFXPNVPII-LVGNKKDLRQ 143
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 5/126 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
++ +DPT+ + F +L+T+ +G LQL DTAGQ+ + ++Y + G +LVY +T
Sbjct: 29 FVDSADPTIE-NTFTKLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVT 86
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
S SFE I V + + + LVG K DL + R +S E KA A +
Sbjct: 87 SIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL---HMERVISYEEGKALAESWNAAF 143
Query: 128 FETSSR 133
E+S++
Sbjct: 144 LESSAK 149
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M DG + L LWDTAGQE + + Y + L+ + + S ASFE
Sbjct: 53 PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 110
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
++ W E + H P+ P+ LVG KLDL
Sbjct: 111 NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 138
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M DG + L LWDTAGQE + + Y + L+ + + S ASFE
Sbjct: 34 PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
++ W E + H P+ P+ LVG KLDL
Sbjct: 92 NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 119
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M DG + L LWDTAGQE + + Y + L+ + + S ASFE
Sbjct: 44 PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 101
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
++ W E + H P+ P+ LVG KLDL
Sbjct: 102 NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 129
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M DG + L LWDTAGQE + + Y + L+ + + S ASFE
Sbjct: 34 PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
++ W E + H P+ P+ LVG KLDL
Sbjct: 92 NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 119
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M DG + L LWDTAGQE + + Y + L+ + + S ASFE
Sbjct: 34 PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
++ W E + H P+ P+ LVG KLDL
Sbjct: 92 NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 119
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M DG + L LWDTAGQE + + Y + L+ + + S ASFE
Sbjct: 34 PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
++ W E + H P+ P+ LVG KLDL
Sbjct: 92 NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 119
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M DG + L LWDTAGQE + + Y + L+ + + S ASFE
Sbjct: 34 PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
++ W E + H P+ P+ LVG KLDL
Sbjct: 92 NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 119
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M DG + L LWDTAGQE + + Y + L+ + + S ASFE
Sbjct: 61 PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 118
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
++ W E + H P+ P+ LVG KLDL
Sbjct: 119 NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 146
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M DG + L LWDTAGQE + + Y + L+ + + S ASFE
Sbjct: 61 PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 118
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
++ W E + H P+ P+ LVG KLDL
Sbjct: 119 NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 146
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M DG + L LWDTAGQE + + Y + L+ + + S ASFE
Sbjct: 34 PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
++ W E + H P+ P+ LVG KLDL
Sbjct: 92 NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 119
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 69/139 (49%), Gaps = 9/139 (6%)
Query: 13 DPTVGVDFFARLVTM-RDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
DPTV + ++++VT+ +D L L DTAGQ+ + + S+ G +LVY +TS S
Sbjct: 54 DPTVE-NTYSKIVTLGKD--EFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHS 110
Query: 72 FEHI-PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
F+ I ++ + H + PV LVG K DL REV E K A E+
Sbjct: 111 FQVIESLYQKLHEGHGKTRVPV-VLVGNKADL---SPEREVQAVEGKKLAESWGATFMES 166
Query: 131 SSRSGFQVENAFTAVTQEI 149
S+R + FT V QEI
Sbjct: 167 SARENQLTQGIFTKVIQEI 185
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 5/136 (3%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + F +L+T+ +G LQL DTAGQ+ + ++Y + G +LVY +TS SF
Sbjct: 31 DPTIE-NTFTKLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSF 88
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I V + + + LVG K DL + R +S E KA A + E+S+
Sbjct: 89 EVIKVIHGKLLDMVGKVQIPIMLVGNKKDL---HMERVISYEEGKALAESWNAAFLESSA 145
Query: 133 RSGFQVENAFTAVTQE 148
+ + F + E
Sbjct: 146 KENQTAVDVFRRIILE 161
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 72/145 (49%), Gaps = 15/145 (10%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + DG +++L LWDTAGQE + + Y ++ L+ + I S S E
Sbjct: 36 PTVFENYIADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDLLQ-SGVPREVSEAEAKAFASQ------NDI 125
+IP W E K H P+ P+ LVG K DL Q RE+++ + + S+ N I
Sbjct: 94 NIPEKWTPEVK-HFCPNVPII-LVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRI 151
Query: 126 LHF---ETSSRSGFQVENAFTAVTQ 147
F E S+++ V F T+
Sbjct: 152 SAFGYLECSAKTKEGVREVFEMATR 176
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 5/136 (3%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + F +L+T+ +G LQL DTAGQ+ + ++Y + G +LVY +TS SF
Sbjct: 36 DPTIE-NTFTKLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSF 93
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I V + + + LVG K DL + R +S E KA A + E+S+
Sbjct: 94 EVIKVIHGKLLDMVGKVQIPIMLVGNKKDL---HMERVISYEEGKALAESWNAAFLESSA 150
Query: 133 RSGFQVENAFTAVTQE 148
+ + F + E
Sbjct: 151 KENQTAVDVFRRIILE 166
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + F +L+T+ +G LQL DTAGQ+ + ++Y + G +LVY +TS SF
Sbjct: 36 DPTIE-NTFTKLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSF 93
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I V + + + LVG K DL + R +S E KA A + E+S+
Sbjct: 94 EVIKVIHGKLLDMVGKVQIPIMLVGNKKDL---HMERVISYEEGKALAESWNAAFLESSA 150
Query: 133 R 133
+
Sbjct: 151 K 151
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + DG +++L LWDTAGQE + + Y ++ L+ + I S S E
Sbjct: 56 PTVFENYIADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 113
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDLLQ 104
+IP W E K H P+ P+ LVG K DL Q
Sbjct: 114 NIPEKWTPEVK-HFCPNVPII-LVGNKKDLRQ 143
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 7 LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDI 66
++++ DPT+ D + + V + D + L++ DTAG E+F ++ Y +N G LVY I
Sbjct: 27 IFVEKYDPTIE-DSYRKQVEV-DAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSI 84
Query: 67 TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDI 125
T++++F + + R + LVG K DL R V + + + A Q N+
Sbjct: 85 TAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDE---RVVGKEQGQNLARQWNNC 141
Query: 126 LHFETSSRSGFQVENAFTAVTQEI 149
E+S++S V F + ++I
Sbjct: 142 AFLESSAKSKINVNEIFYDLVRQI 165
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 7 LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDI 66
++++ DPT+ D + + V + D + L++ DTAG E+F ++ Y +N G LVY I
Sbjct: 29 IFVEKYDPTIE-DSYRKQVEV-DAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSI 86
Query: 67 TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDI 125
T++++F + + R + LVG K DL R V + + + A Q N+
Sbjct: 87 TAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED---ERVVGKEQGQNLARQWNNC 143
Query: 126 LHFETSSRSGFQVENAFTAVTQEI 149
E+S++S V F + ++I
Sbjct: 144 AFLESSAKSKINVNEIFYDLVRQI 167
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + DG +++L LWDTAGQE + + Y ++ L+ + I S S E
Sbjct: 36 PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
+IP W E K H P+ P+ LVG K DL
Sbjct: 94 NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 121
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + DG +++L LWDTAGQE + + Y ++ L+ + I S S E
Sbjct: 34 PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 91
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
+IP W E K H P+ P+ LVG K DL
Sbjct: 92 NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 119
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + DG +++L LWDTAGQE + + Y ++ L+ + I S S E
Sbjct: 34 PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 91
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
+IP W E K H P+ P+ LVG K DL
Sbjct: 92 NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 119
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + DG +++L LWDTAGQE + + Y ++ L+ + I S S E
Sbjct: 37 PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 94
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
+IP W E K H P+ P+ LVG K DL
Sbjct: 95 NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 122
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + DG +++L LWDTAGQE + + Y ++ L+ + I S S E
Sbjct: 38 PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 95
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
+IP W E K H P+ P+ LVG K DL
Sbjct: 96 NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 123
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + DG +++L LWDTAGQE + + Y ++ L+ + I S S E
Sbjct: 40 PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 97
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
+IP W E K H P+ P+ LVG K DL
Sbjct: 98 NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 125
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + DG +++L LWDTAGQE + + Y ++ L+ + I S S E
Sbjct: 36 PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
+IP W E K H P+ P+ LVG K DL
Sbjct: 94 NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 121
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + DG +++L LWDTAGQE + + Y ++ L+ + I S S E
Sbjct: 37 PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 94
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
+IP W E K H P+ P+ LVG K DL
Sbjct: 95 NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 122
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + DG +++L LWDTAGQE + + Y ++ L+ + I S S E
Sbjct: 36 PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
+IP W E K H P+ P+ LVG K DL
Sbjct: 94 NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 121
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ ++ PTV ++ A + DG +++L LWDTAGQE + + Y ++ L+ + I
Sbjct: 33 FPEVYVPTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSID 90
Query: 68 SRASFEHIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
S S E+IP W E K H P+ P+ LVG K DL
Sbjct: 91 SPDSLENIPEKWTPEVK-HFCPNVPII-LVGNKKDL 124
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + DG +++L LWDTAGQE + + Y ++ L+ + I S S E
Sbjct: 36 PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
+IP W E K H P+ P+ LVG K DL
Sbjct: 94 NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 121
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + DG +++L LWDTAGQE + + Y ++ L+ + I S S E
Sbjct: 38 PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 95
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
+IP W E K H P+ P+ LVG K DL
Sbjct: 96 NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 123
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + DG +++L LWDTAGQE + + Y ++ L+ + I S S E
Sbjct: 38 PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 95
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
+IP W E K H P+ P+ LVG K DL
Sbjct: 96 NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 123
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 52/109 (47%), Gaps = 24/109 (22%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR---- 69
PTV ++ A + M DG + L LWDTAGQE + + Y +VG DITSR
Sbjct: 36 PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKDK 93
Query: 70 ---------------ASFEHIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
ASFE++ W E + H P+ P+ LVG KLDL
Sbjct: 94 PIADVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPII-LVGTKLDL 140
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M DG + L LWDTAG E + + Y + L+ + + S ASF
Sbjct: 186 PTVFDNYSANV--MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFH 243
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
H+ W E + H P+ P+ LVG KLDL
Sbjct: 244 HVRAKWYPEVRHHC-PNTPII-LVGTKLDL 271
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M DG + L LWDTAG E + + Y + L+ + + S ASF
Sbjct: 186 PTVFDNYSANV--MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFH 243
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
H+ W E + H P+ P+ LVG KLDL
Sbjct: 244 HVRAKWYPEVRHHC-PNTPII-LVGTKLDL 271
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 81/145 (55%), Gaps = 11/145 (7%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+I+ DPT+ DF+ + + + D + L++ DTAG E+F S+ Y +N G +LVY +
Sbjct: 28 FIEKYDPTIE-DFYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLV 85
Query: 68 SRASFEHI-PV--WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND 124
++ SF+ I P+ ++ KR+ PV LVG K+DL REVS +E +A A +
Sbjct: 86 NQQSFQDIKPMRDQIIRVKRY--EKVPVI-LVGNKVDLESE---REVSSSEGRALAEEWG 139
Query: 125 ILHFETSSRSGFQVENAFTAVTQEI 149
ETS++S V+ F + +++
Sbjct: 140 CPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M DG + L LWDTAG E + + Y + L+ + + S ASF
Sbjct: 186 PTVFDNYSANV--MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFH 243
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
H+ W E + H P+ P+ LVG KLDL
Sbjct: 244 HVRAKWYPEVRHHC-PNTPII-LVGTKLDL 271
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV + F+ ++ ++ I L LWDTAGQE + + Y +S LL + + +R SF+
Sbjct: 53 PTV-FENFSHVMKYKNEEFI-LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFD 110
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDLLQSG 106
+I W E K +I+ + V LVG K+DL + G
Sbjct: 111 NISTKWEPEIKHYIDTAKTV--LVGLKVDLRKDG 142
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + DG +++L LWDTAGQE + Y ++ L+ + I S S E
Sbjct: 36 PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLE 93
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
+IP W E K H P+ P+ LVG K DL
Sbjct: 94 NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 121
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M DG + L LWDTAG E + + Y + L+ + + S ASFE
Sbjct: 37 PTVFDNYSANV--MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFE 94
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
++ W E + H P+ P+ LVG KLDL
Sbjct: 95 NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 122
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M DG + L LWDTAG E + + Y + L+ + + S ASFE
Sbjct: 61 PTVFDNYSANV--MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFE 118
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
++ W E + H P+ P+ LVG KLDL
Sbjct: 119 NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 146
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 35 LQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV-WMMEAKRHIEPHRPVF 93
L LWDTAGQE + + Y +S LL + + +R SF++I W E K +I+ + V
Sbjct: 73 LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV- 131
Query: 94 ALVGCKLDLLQSG 106
LVG K+DL + G
Sbjct: 132 -LVGLKVDLRKDG 143
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M DG + L LWDTAG E + + Y + L+ + + S ASFE
Sbjct: 34 PTVFDNYSANV--MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
++ W E + H P+ P+ LVG KLDL
Sbjct: 92 NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 119
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M DG + L LWDTAG E + + Y + L+ + + S ASFE
Sbjct: 34 PTVFDNYSANV--MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
++ W E + H P+ P+ LVG KLDL
Sbjct: 92 NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 119
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M D + L LWDTAGQE + + Y + L+ + + S AS+E
Sbjct: 40 PTVFDNYSANV--MVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYE 97
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
++ W E + H P P+ LVG KLDL
Sbjct: 98 NVRAKWFPEVRHHC-PSTPII-LVGTKLDL 125
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M D + L LWDTAGQE + + Y + L+ + + S AS+E
Sbjct: 41 PTVFDNYSANV--MVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYE 98
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
++ W E + H P P+ LVG KLDL
Sbjct: 99 NVRAKWFPEVRHHC-PSTPII-LVGTKLDL 126
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + M D + L LWDTAGQE + + Y + L+ + + S AS+E
Sbjct: 34 PTVFDNYSANV--MVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYE 91
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
++ W E + H P P+ LVG KLDL
Sbjct: 92 NVRAKWFPEVRHHC-PSTPII-LVGTKLDL 119
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + DG +++L LWDTAGQE + + Y ++ L+ + + S S E
Sbjct: 56 PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLE 113
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
+IP W+ E K H P+ P+ LV K DL
Sbjct: 114 NIPEKWVPEVK-HFCPNVPII-LVANKKDL 141
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 19 DFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP-V 77
D F+ +V++ DG ++LQL DTAGQ+ F + Y N+ LL + + S +SF+++
Sbjct: 55 DNFSAVVSV-DGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEK 113
Query: 78 WMMEAKRHIEPHRPVFALVGCKLDL 102
W+ E + H P P+ LVG + DL
Sbjct: 114 WVPEIRCHC-PKAPII-LVGTQSDL 136
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 6/144 (4%)
Query: 7 LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDI 66
++++ DPT+ D + + V + D + L++ DTAG E+F ++ Y +N G LVY I
Sbjct: 27 IFVEKYDPTIE-DSYRKQVEV-DCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSI 84
Query: 67 TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDI 125
T++++F + + R + LVG K DL R V + + + A Q +
Sbjct: 85 TAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE---RVVGKEQGQNLARQWCNC 141
Query: 126 LHFETSSRSGFQVENAFTAVTQEI 149
E+S++S V F + ++I
Sbjct: 142 AFLESSAKSKINVNEIFYDLVRQI 165
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 30 GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPH 89
G IK +WDTAGQE+ + YY + GA+L +D+TSR + +++ W+ E + +
Sbjct: 58 GNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE 117
Query: 90 RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
P+ + K+D+ +++S+ + +FE S+++
Sbjct: 118 API-VVCANKIDIKNR---QKISKKLVMEVLKGKNYEYFEISAKT 158
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A + DG +++L LWDTAG E + + Y ++ L+ + I S S E
Sbjct: 39 PTVFENYVADIEV--DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 96
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
+IP W E K H P+ P+ LVG K DL
Sbjct: 97 NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 124
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 6/144 (4%)
Query: 7 LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDI 66
+++ DPT+ D + + V + D + L++ DTAG E+F ++ Y +N G LVY I
Sbjct: 27 IFVDEYDPTIE-DSYRKQVEV-DCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSI 84
Query: 67 TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDI 125
T++++F + + R + LVG K DL R V + + + A Q +
Sbjct: 85 TAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE---RVVGKEQGQNLARQWCNC 141
Query: 126 LHFETSSRSGFQVENAFTAVTQEI 149
E+S++S V F + ++I
Sbjct: 142 AFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 30 GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI-PVWMMEAKRHIEP 88
G + L +WDTAGQ+ + + +Y ++ LL +D+TS SF++I W E H
Sbjct: 79 GKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN-HFCK 137
Query: 89 HRPVFALVGCKLDL 102
P+ +VGCK DL
Sbjct: 138 KVPII-VVGCKTDL 150
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 67/141 (47%), Gaps = 14/141 (9%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV + R V D + LQ+ DT G +F ++ + +LVY ITSR S E
Sbjct: 34 PTVEDTY--RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLE 91
Query: 74 HI-PVW--MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
+ P++ + E K +E P+ LVG K D S REV +EA+A A ET
Sbjct: 92 ELKPIYEQICEIKGDVESI-PIM-LVGNKCDESPS---REVQSSEAEALARTWKCAFMET 146
Query: 131 SSRSGFQVENAFTAVTQEIYN 151
S++ V+ F QE+ N
Sbjct: 147 SAKLNHNVKELF----QELLN 163
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 9/142 (6%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITK-SYYRNSVGALLVYDITSRAS 71
DPT+ + R D + +++ DTAGQE +I + + R G +LVYDIT R S
Sbjct: 58 DPTLESTY--RHQATIDDEVVSMEILDTAGQED--TIQREGHMRWGEGFVLVYDITDRGS 113
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
FE + +P LVG K DL S R+VS E + A++ +E S
Sbjct: 114 FEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS---RQVSTEEGEKLATELACAFYECS 170
Query: 132 SRSG-FQVENAFTAVTQEIYNR 152
+ +G + F + +E+ R
Sbjct: 171 ACTGEGNITEIFYELCREVRRR 192
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 9/145 (6%)
Query: 14 PTVGVDFFARLVTMRDGAR---IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA 70
+G D + R + M DG I L +W+ G+ + + + L+VY IT RA
Sbjct: 69 EVLGEDTYERTL-MVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRA 125
Query: 71 SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
SFE ++ +R + LVG K DL++ REVS +E +A A D ET
Sbjct: 126 SFEKASELRIQLRRARQTEDIPIILVGNKSDLVRC---REVSVSEGRACAVVFDCKFIET 182
Query: 131 SSRSGFQVENAFTAVTQEIYNRVQS 155
S+ V+ F + +++ R S
Sbjct: 183 SAAVQHNVKELFEGIVRQVRLRRDS 207
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 14 PTVGVDFFARLVTMRDGAR---IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA 70
+G D + R + M DG I L +W+ G+ + + + L+VY IT RA
Sbjct: 38 EVLGEDTYERTL-MVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRA 94
Query: 71 SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
SFE ++ +R + LVG K DL++ REVS +E +A A D ET
Sbjct: 95 SFEKASELRIQLRRARQTEDIPIILVGNKSDLVRC---REVSVSEGRACAVVFDCKFIET 151
Query: 131 SSRSGFQVENAFTAVTQEIYNR 152
S+ V+ F + +++ R
Sbjct: 152 SAAVQHNVKELFEGIVRQVRLR 173
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 9/145 (6%)
Query: 14 PTVGVDFFARLVTMRDGAR---IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA 70
+G D + R + M DG I L +W+ G+ + + + L+VY IT RA
Sbjct: 38 EVLGEDTYERTL-MVDGESATIILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRA 94
Query: 71 SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
SFE ++ +R + LVG K DL++ REVS +E +A A D ET
Sbjct: 95 SFEKASELRIQLRRARQTEDIPIILVGNKSDLVR---XREVSVSEGRAXAVVFDCKFIET 151
Query: 131 SSRSGFQVENAFTAVTQEIYNRVQS 155
S+ V+ F + +++ R S
Sbjct: 152 SAAVQHNVKELFEGIVRQVRLRRDS 176
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PT+G F V ++ I +WD GQ+R RS+ + YYRN+ G + V D R+
Sbjct: 47 PTIG--FNVETVQYKN---ISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIG 101
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
M E V+ + K DL ++ E++E
Sbjct: 102 EAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITE 141
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 9/145 (6%)
Query: 14 PTVGVDFFARLVTMRDGAR---IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA 70
+G D + R + M DG I L +W+ G+ + + + L+VY IT RA
Sbjct: 38 EVLGEDTYERTL-MVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRA 94
Query: 71 SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
SFE ++ +R + LVG K DL++ REVS +E +A A D ET
Sbjct: 95 SFEKASELRIQLRRARQTEDIPIILVGNKSDLVR---XREVSVSEGRAXAVVFDXKFIET 151
Query: 131 SSRSGFQVENAFTAVTQEIYNRVQS 155
S+ V+ F + +++ R S
Sbjct: 152 SAAVQHNVKELFEGIVRQVRLRRDS 176
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 9/123 (7%)
Query: 23 RLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI-PVW--M 79
R V D + LQ+ DT G +F ++ + +LV+ +TS+ S E + P++ +
Sbjct: 46 RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLI 105
Query: 80 MEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVE 139
++ K +E PV LVG K D Q REV EA+A A + ETS++ + V+
Sbjct: 106 VQIKGSVEDI-PVM-LVGNKCDETQ----REVDTREAQAVAQEWKCAFMETSAKMNYNVK 159
Query: 140 NAF 142
F
Sbjct: 160 ELF 162
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 15 TVGVDFFARLVTMRDGA-RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
T GV+ VT+ D ++L L DTAG + ++ Y+ A+LV+D++S SFE
Sbjct: 54 TSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFE 113
Query: 74 HIPVWMMEAKRHIEP--HRPVFA-LVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
W E + P RP+ A LV K DL +V A+ +A+ N + F+
Sbjct: 114 SCKAW-FELLKSARPDRERPLRAVLVANKTDLPPQR--HQVRLDMAQDWATTNTLDFFDV 170
Query: 131 SSR-SGFQVENAFTAVTQEIY 150
S+ G + F ++ Y
Sbjct: 171 SANPPGKDADAPFLSIATTFY 191
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PT+G F V ++ I +WD GQ+R RS+ + YYRN+ G + V D R+
Sbjct: 47 PTIG--FNVETVQYKN---ISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIG 101
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
M E + + K DL ++ E++E
Sbjct: 102 EAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITE 141
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PT+G F V ++ I +WD GQ+R RS+ + YYRN+ G + V D R+
Sbjct: 30 PTIG--FNVETVQYKN---ISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIG 84
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
M E + + K DL ++ E++E
Sbjct: 85 EAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITE 124
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 5/139 (3%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PT+G F VT ++ +K Q+WD GQ R + YY N+ + V D R
Sbjct: 32 PTIG--FNVETVTYKN---LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIG 86
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
++ E + + + K D+ Q+ P E++ A F+TS+
Sbjct: 87 ISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSAT 146
Query: 134 SGFQVENAFTAVTQEIYNR 152
G ++ A + + + +R
Sbjct: 147 KGTGLDEAMEWLVETLKSR 165
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 3/127 (2%)
Query: 29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEP 88
DG L ++D Q+ R + ++VY +T + SFE ++ +R +
Sbjct: 50 DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQT 109
Query: 89 HRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE 148
LVG K DL++S REVS E +A A D ETS+ V+ F V ++
Sbjct: 110 DDVPIILVGNKSDLVRS---REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQ 166
Query: 149 IYNRVQS 155
I R S
Sbjct: 167 IRLRRDS 173
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A L T + R++L LWDT+G + ++ Y +S LL +DI+ + +
Sbjct: 42 PTVFENYTACLET--EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVD 99
Query: 74 H-IPVWMMEAKRHIEPHRPVFALVGCKLDL 102
+ W E + R L+GCK DL
Sbjct: 100 SALKKWRTEILDYCPSTR--VLLIGCKTDL 127
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 3/127 (2%)
Query: 29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEP 88
DG L ++D Q+ R + ++VY +T + SFE ++ +R +
Sbjct: 50 DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQT 109
Query: 89 HRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE 148
LVG K DL++S REVS E +A A D ETS+ V+ F V ++
Sbjct: 110 DDVPIILVGNKSDLVRS---REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQ 166
Query: 149 IYNRVQS 155
I R S
Sbjct: 167 IRLRRDS 173
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
Y + PTV ++ A L T + R++L LWDT+G + ++ Y +S LL +DI+
Sbjct: 52 YPETYVPTVFENYTACLET--EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDIS 109
Query: 68 SRASFEH-IPVWMMEAKRHIEPHRPVFALVGCKLDL 102
+ + + W E + R L+GCK DL
Sbjct: 110 RPETVDSALKKWRTEILDYCPSTR--VLLIGCKTDL 143
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV D +A V M G L L+DTAGQE + + Y + L+ + + S +SFE
Sbjct: 44 PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 101
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
++ W+ E H P P F LVG ++DL
Sbjct: 102 NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 129
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV D +A V M G L L+DTAGQE + + Y + L+ + + S +SFE
Sbjct: 38 PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 95
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
++ W+ E H P P F LVG ++DL
Sbjct: 96 NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 123
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
Y + PTV ++ A L T + R++L LWDT+G + ++ Y +S LL +DI+
Sbjct: 35 YPETYVPTVFENYTACLET--EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDIS 92
Query: 68 SRASFEH-IPVWMMEAKRHIEPHRPVFALVGCKLDL 102
+ + + W E + R L+GCK DL
Sbjct: 93 RPETVDSALKKWRTEILDYCPSTR--VLLIGCKTDL 126
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Query: 29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEP 88
DG L ++D Q+ R + ++VY +T + SFE ++ +R +
Sbjct: 45 DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQT 104
Query: 89 HRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE 148
LVG K DL++S REVS E +A A D ETS+ V+ F V ++
Sbjct: 105 DDVPIILVGNKSDLVRS---REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQ 161
Query: 149 IYNR 152
I R
Sbjct: 162 IRLR 165
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV D +A V M G L L+DTAGQE + + Y + L+ + + S +SFE
Sbjct: 36 PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 93
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
++ W+ E H P P F LVG ++DL
Sbjct: 94 NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 121
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV D +A V M G L L+DTAGQE + + Y + L+ + + S +SFE
Sbjct: 34 PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
++ W+ E H P P F LVG ++DL
Sbjct: 92 NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 119
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV D +A V M G L L+DTAGQE + + Y + L+ + + S +SFE
Sbjct: 34 PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
++ W+ E H P P F LVG ++DL
Sbjct: 92 NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 119
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV D +A + M G L L+DTAGQE + + Y + L+ + + S +SFE
Sbjct: 41 PTV-FDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 98
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
++ W+ E H P P F LVG ++DL
Sbjct: 99 NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 126
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV D +A V M G L L+DTAGQE + + Y + L+ + + S +SFE
Sbjct: 34 PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
++ W+ E H P P F LVG ++DL
Sbjct: 92 NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 119
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV D +A V M G L L+DTAGQE + + Y + L+ + + S +SFE
Sbjct: 34 PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
++ W+ E H P P F LVG ++DL
Sbjct: 92 NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 119
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV D +A V M G L L+DTAGQE + + Y + L+ + + S +SFE
Sbjct: 34 PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
++ W+ E H P P F LVG ++DL
Sbjct: 92 NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 119
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTVG F VT ++ +K +WD GQ++ R + + YY + G + V D R +
Sbjct: 30 PTVG--FNVETVTYKN---VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRID 84
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
+ E + + K DL + P E+ E
Sbjct: 85 EARQELHRIINDREXRDAIILIFANKQDLPDAXKPHEIQE 124
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV D +A V M G L L+DTAGQE + + Y + L+ + + S +SFE
Sbjct: 41 PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 98
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
++ W+ E H P P F LVG ++DL
Sbjct: 99 NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 126
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV D +A V M G L L+DTAGQE + + Y + L+ + + S +SFE
Sbjct: 34 PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
++ W+ E H P P F LVG ++DL
Sbjct: 92 NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 119
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV D +A V M G L L+DTAGQE + + Y + L+ + + S +SFE
Sbjct: 34 PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
++ W+ E H P P F LVG ++DL
Sbjct: 92 NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 119
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV D +A V M G L L+DTAGQE + + Y + L+ + + S +SFE
Sbjct: 37 PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 94
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
++ W+ E H P P F LVG ++DL
Sbjct: 95 NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 122
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV D +A V M G L L+DTAGQE + + Y + L+ + + S +SFE
Sbjct: 35 PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 92
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
++ W+ E H P P F LVG ++DL
Sbjct: 93 NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 120
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 24 LVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP-VWMMEA 82
+ M G L L+DTAGQE + + Y + L+ + + S +SFE++ W+ E
Sbjct: 42 VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
Query: 83 KRHIEPHRPVFALVGCKLDL 102
H P P F LVG ++DL
Sbjct: 102 THHC-PKTP-FLLVGTQIDL 119
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV D +A V M G L L+DTAGQE + + Y + L+ + + S +SFE
Sbjct: 37 PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 94
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
++ W+ E H P P F LVG ++DL
Sbjct: 95 NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 122
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV D +A V M G L L+DTAGQE + + Y + L+ + + S +SFE
Sbjct: 34 PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
++ W+ E H P P F LVG ++DL
Sbjct: 92 NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 119
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV D +A V M G L L+DTAGQE + + Y + L+ + + S +SFE
Sbjct: 36 PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 93
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
++ W+ E H P P F LVG ++DL
Sbjct: 94 NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 121
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV D +A V M G L L+DTAGQE + + Y + L+ + + S +SFE
Sbjct: 34 PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
++ W+ E H P P F LVG ++DL
Sbjct: 92 NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 119
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 16 VGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV-----GALLVYDITSRA 70
+G D + R +T+ DG L + DT E+ + KS+ + S ++VY I R
Sbjct: 36 LGEDVYERTLTV-DGEDTTLVVVDTWEAEK---LDKSWSQESCLQGGSAYVIVYSIADRG 91
Query: 71 SFEHIPVWMMEAKR-HIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129
SFE ++ +R H H P+ LVG K DL + REVS E +A A D E
Sbjct: 92 SFESASELRIQLRRTHQADHVPII-LVGNKADLARC---REVSVEEGRACAVVFDCKFIE 147
Query: 130 TSSRSGFQVENAF 142
TS+ V F
Sbjct: 148 TSATLQHNVAELF 160
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A D RI+L LWDT+G + ++ Y +S L+ +DI+ + +
Sbjct: 38 PTVFENYTASFEI--DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLD 95
Query: 74 HIPVWMMEAKRHIEPHRP--VFALVGCKLDL 102
+ + + K I+ P LVGCK DL
Sbjct: 96 SV---LKKWKGEIQEFCPNTKMLLVGCKSDL 123
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV D +A VT+ G + L L+DTAGQE + + Y + L+ + + + ASF+
Sbjct: 49 PTV-FDHYAVSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQ 106
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
++ W+ E K + P+ P F L+G ++DL
Sbjct: 107 NVKEEWVPELKEY-APNVP-FLLIGTQIDL 134
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A D RI+L LWDT+G + ++ Y +S L+ +DI+ + +
Sbjct: 54 PTVFENYTASFEI--DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLD 111
Query: 74 HIPVWMMEAKRHIEPHRP--VFALVGCKLDL 102
+ + + K I+ P LVGCK DL
Sbjct: 112 SV---LKKWKGEIQEFCPNTKMLLVGCKSDL 139
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV D +A V + G L L+DTAGQE + + Y + L+ + + S +SFE
Sbjct: 34 PTV-FDNYAVTVXI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
++ W+ E H P P F LVG ++DL
Sbjct: 92 NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 119
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTVG F VT ++ +K +WD GQ++ R + + YY + G + V D R +
Sbjct: 42 PTVG--FNVETVTYKN---VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRID 96
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
+ E + + K DL + P E+ E
Sbjct: 97 EARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQE 136
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTVG F VT ++ +K +WD GQ++ R + + YY + G + V D R +
Sbjct: 30 PTVG--FNVETVTYKN---VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRID 84
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
+ E + + K DL + P E+ E
Sbjct: 85 EARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQE 124
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTVG F VT ++ +K +WD GQ++ R + + YY + G + V D R +
Sbjct: 43 PTVG--FNVETVTYKN---VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRID 97
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
+ E + + K DL + P E+ E
Sbjct: 98 EARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQE 137
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A D RI+L LWDT+G + ++ Y +S L+ +DI+ + +
Sbjct: 59 PTVFENYTASFEI--DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLD 116
Query: 74 HIPVWMMEAKRHIEPHRP--VFALVGCKLDL 102
+ + + K I+ P LVGCK DL
Sbjct: 117 SV---LKKWKGEIQEFCPNTKMLLVGCKSDL 144
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTVG F VT ++ +K +WD GQ++ R + + YY + G + V D R +
Sbjct: 30 PTVG--FNVETVTYKN---VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRID 84
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
+ E + + K DL + P E+ E
Sbjct: 85 EARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQE 124
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV D +A V M G L L DTAGQE + + Y + L+ + + S +SFE
Sbjct: 34 PTV-FDNYAVTV-MIGGEPYTLGLRDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
++ W+ E H P P F LVG ++DL
Sbjct: 92 NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 119
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTVG F VT ++ +K +WD GQ++ R + + YY + G + V D R +
Sbjct: 352 PTVG--FNVETVTYKN---VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRID 406
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
+ E + + K DL + P E+ E
Sbjct: 407 EARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQE 446
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 61 LLVYDITSRASFEHIPVWMMEAKRHIEPHR--PVFALVGCKLDLLQSGVPREVSEAEAKA 118
L+V+ +T R SF +P ++ R PH PV LVG K DL +S REVS E +
Sbjct: 90 LIVFSVTDRRSFSKVPETLLRL-RAGRPHHDLPVI-LVGNKSDLARS---REVSLEEGRH 144
Query: 119 FASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152
A H ETS+ F ++I R
Sbjct: 145 LAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 178
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PT+G + V I +WD GQ+R RS+ + YY N+ G + V D R+
Sbjct: 47 PTIGFN-----VECVQYCNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIG 101
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
M E + + K DL ++ E++E
Sbjct: 102 EAREVMQRMLNEDELCNAAWLVFANKQDLPEAMSAAEITE 141
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 61 LLVYDITSRASFEHIPVWMMEAKRHIEPHR--PVFALVGCKLDLLQSGVPREVSEAEAKA 118
L+V+ +T R SF +P ++ R PH PV LVG K DL +S REVS E +
Sbjct: 101 LIVFSVTDRRSFSKVPETLLRL-RAGRPHHDLPVI-LVGNKSDLARS---REVSLEEGRH 155
Query: 119 FASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152
A H ETS+ F ++I R
Sbjct: 156 LAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 189
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 61 LLVYDITSRASFEHIPVWMMEAKRHIEPHR--PVFALVGCKLDLLQSGVPREVSEAEAKA 118
L+V+ +T R SF +P ++ R PH PV LVG K DL +S REVS E +
Sbjct: 80 LIVFSVTDRRSFSKVPETLLRL-RAGRPHHDLPVI-LVGNKSDLARS---REVSLEEGRH 134
Query: 119 FASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152
A H ETS+ F ++I R
Sbjct: 135 LAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV D +A V M G L L+DTAG E + + Y + L+ + + S +SFE
Sbjct: 34 PTV-FDNYAVTV-MIGGEPYTLGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
++ W+ E H P P F LVG ++DL
Sbjct: 92 NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 119
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV D +A V M G L L+DTAG E + + Y + L+ + + S +SFE
Sbjct: 38 PTV-FDNYAVTV-MIGGEPYTLGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 95
Query: 74 HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
++ W+ E H P P F LVG ++DL
Sbjct: 96 NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 123
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PT+G F V ++ I +WD GQ++ R + + YY+N+ + V D R
Sbjct: 47 PTIG--FNVETVEYKN---ISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIG 101
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
+M+ E + + K DL Q+ EV+E
Sbjct: 102 EAREELMKMLNEDEMRNAILLVFANKHDLPQAMSISEVTE 141
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTVG F VT ++ +K +WD G ++ R + + YY + G + V D R +
Sbjct: 33 PTVG--FNVETVTYKN---VKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRID 87
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
+ E + + K DL + P E+ E
Sbjct: 88 EARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQE 127
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTVG F VT ++ +K +WD G ++ R + + YY + G + V D R +
Sbjct: 43 PTVG--FNVETVTYKN---VKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRID 97
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
+ E + + K DL + P E+ E
Sbjct: 98 EARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQE 137
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PT+G + V + I +WD GQ+R R + K Y++N+ G + V D R +
Sbjct: 47 PTIGFN-----VETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQ 101
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
+ + + E V L K DL + E+++
Sbjct: 102 EVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTD 141
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTVG F VT ++ +K +WD G ++ R + + YY + G + V D R +
Sbjct: 32 PTVG--FNVETVTYKN---VKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRID 86
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
+ E + + K DL + P E+ E
Sbjct: 87 EARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQE 126
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PT+G F V R+ I +WD GQ++ R + + YY N+ G + V D R +
Sbjct: 47 PTIG--FNVETVEFRN---ISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERID 101
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
+ E + + K DL + EV+E
Sbjct: 102 DAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTE 141
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTVG F R VT + +++WD GQ RFRS+ + Y R + + D R E
Sbjct: 53 PTVG--FNMRKVTK---GNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIE 107
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 23/90 (25%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALL----------- 62
PTVG F R +T + ++LWD GQ RFRS+ + Y R V A++
Sbjct: 53 PTVG--FNMRKITK---GNVTIKLWDIGGQPRFRSMWERYCR-GVSAIVYMVDAADQEKI 106
Query: 63 ------VYDITSRASFEHIPVWMMEAKRHI 86
++++ + + IPV ++ KR +
Sbjct: 107 EASKNELHNLLDKPQLQGIPVLVLGNKRDL 136
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PT+G + V + I +WD GQ++ R + + Y++N+ G + V D R
Sbjct: 46 PTIGFN-----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVN 100
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
+M E V + K DL + E+++
Sbjct: 101 EAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITD 140
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 10/102 (9%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PT+G + V + I +WD GQ++ R + + Y++N+ G + V D R
Sbjct: 47 PTIGFN-----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVN 101
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAE 115
+M E V + K DL P ++ AE
Sbjct: 102 EAREELMRMLAEDELRDAVLLVFANKQDL-----PNAMNAAE 138
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PT+G + V + I +WD GQ++ R + + Y++N+ G + V D R
Sbjct: 30 PTIGFN-----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVN 84
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
+M E V + K DL + E+++
Sbjct: 85 EAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITD 124
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 23/90 (25%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALL----------- 62
PTVG F R +T + ++LWD GQ RFRS+ + Y R V A++
Sbjct: 62 PTVG--FNMRKITK---GNVTIKLWDIGGQPRFRSMWERYCR-GVSAIVYMVDAADQEKI 115
Query: 63 ------VYDITSRASFEHIPVWMMEAKRHI 86
++++ + + IPV ++ KR +
Sbjct: 116 EASKNELHNLLDKPQLQGIPVLVLGNKRDL 145
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR 69
PT+G + V + I +WD GQ++ R + + Y++N+ G + V D R
Sbjct: 195 PTIGFN-----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 245
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR 69
PT+G + V + I +WD GQ++ R + + Y++N+ G + V D R
Sbjct: 50 PTIGFN-----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 100
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 15 TVGVDFFARLVTMRDGAR--IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS-RAS 71
TVG+D + +RD + + L +WD AG+E F S + L VYD++ +A
Sbjct: 36 TVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAE 95
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDL 102
+ W+ K PV LVG LD+
Sbjct: 96 VDAXKPWLFNIKARASSS-PVI-LVGTHLDV 124
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 15 TVGVDFFARLVTMRDGAR--IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS-RAS 71
TVG+D + +RD + + L +WD AG+E F S + L VYD++ +A
Sbjct: 34 TVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAE 93
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDL 102
+ W+ K PV LVG LD+
Sbjct: 94 VDAXKPWLFNIKARASSS-PVI-LVGTHLDV 122
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 34 KLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
KL +WD GQ + R +SY+ N+ + V D R FE
Sbjct: 62 KLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEE 102
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 34 KLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
KL +WD GQ + R +SY+ N+ + V D R FE
Sbjct: 61 KLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEE 101
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 34 KLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
KL +WD GQ + R +SY+ N+ + V D R FE
Sbjct: 49 KLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEE 89
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
T+LY + + + PT+G + ++ + +WD GQE RS +YY N+
Sbjct: 37 TILYQFSMNEVVHTSPTIGSNVEEIVIN-----NTRFLMWDIGGQESLRSSWNTYYTNTE 91
Query: 59 GALLVYDITSR 69
++V D T R
Sbjct: 92 FVIVVVDSTDR 102
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
T+LY + + + PT+G + ++ + +WD GQE RS +YY N+
Sbjct: 36 TILYQFSMNEVVHTSPTIGSNVEEIVIN-----NTRFLMWDIGGQESLRSSWNTYYTNTE 90
Query: 59 GALLVYDITSR 69
++V D T R
Sbjct: 91 FVIVVVDSTDR 101
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR 69
PT+G + V + I +WD GQ++ R + + Y++N+ G + V D R
Sbjct: 59 PTIGFN-----VETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 109
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 5/129 (3%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PT+G F VT ++ +K Q+WD G R + YY N+ + V D R
Sbjct: 34 PTIG--FNVETVTYKN---LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIG 88
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
++ E + + + K D+ Q+ E++ + F+TS+
Sbjct: 89 ISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSAT 148
Query: 134 SGFQVENAF 142
G ++ A
Sbjct: 149 KGTGLDEAM 157
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR 69
+ PT+G + ++ + +WD GQE RS +YY N+ ++V D T R
Sbjct: 44 TSPTIGSNVEEIVIN-----NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDR 96
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 33.9 bits (76), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR 69
+ PT+G + ++ + +WD GQE RS +YY N+ ++V D T R
Sbjct: 44 TSPTIGSNVEEIVIN-----NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDR 96
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PT+G + V + I +WD G ++ R + + Y++N+ G + V D R
Sbjct: 32 PTIGFN-----VETVEYKNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVN 86
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
+M E V + K DL + E+++
Sbjct: 87 EAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITD 126
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 34 KLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
KL +WD GQ+ RS ++Y+ ++ G + V D R +
Sbjct: 63 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQ 102
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 34 KLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
KL +WD GQ+ RS ++Y+ ++ G + V D R +
Sbjct: 61 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQ 100
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 34 KLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
KL +WD GQ+ RS ++Y+ ++ G + V D R +
Sbjct: 63 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQ 102
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR 69
PT+G F + + R KL +WD GQ+ RS ++Y+ ++ G + V D R
Sbjct: 48 PTLG--FNIKTLEHRG---FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADR 98
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 3 TLLYLYIQI----SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
T+LY ++ + PT+G + +V +WD GQE RS +YY N+
Sbjct: 31 TILYQFLMNEVVHTSPTIGSNVEEIVV-----KNTHFLMWDIGGQESLRSSWNTYYSNTE 85
Query: 59 GALLVYDITSR 69
+LV D R
Sbjct: 86 FIILVVDSIDR 96
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 3 TLLYLYIQISD-----PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNS 57
T+LY +QI + PT+G F ++ ++ +KL +WD GQ R + YY ++
Sbjct: 33 TILY-RLQIGEVVTTKPTIG--FNVETLSYKN---LKLNVWDLGGQTSIRPYWRCYYADT 86
Query: 58 VGALLVYDITSR 69
+ V D T +
Sbjct: 87 AAVIFVVDSTDK 98
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gppnhp
Length = 164
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 34 KLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
KL +WD G + R +SY+ N+ + V D R FE
Sbjct: 49 KLNVWDIGGLRKIRPYWRSYFENTDILIYVIDSADRKRFEE 89
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 5/139 (3%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PT+G F VT ++ +K Q+WD G R + YY N+ + V D R
Sbjct: 37 PTIG--FNVETVTYKN---LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIG 91
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
++ E + + + K D Q+ E + + F+TS+
Sbjct: 92 ISKSELVAXLEEEELRKAILVVFANKQDXEQAXTSSEXANSLGLPALKDRKWQIFKTSAT 151
Query: 134 SGFQVENAFTAVTQEIYNR 152
G ++ A + + + +R
Sbjct: 152 KGTGLDEAXEWLVETLKSR 170
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 7/123 (5%)
Query: 29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHI-E 87
D + L++ DTA + R+ + Y + L+VY + SR SF+ ++ H E
Sbjct: 65 DHQPVHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKE 123
Query: 88 PHRPVFALV-GCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQ-VENAFTAV 145
R + AL+ G KLD+ Q R+V++AE A A + L FE S+ F+ V++ F
Sbjct: 124 TQRSIPALLLGNKLDMAQY---RQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEA 180
Query: 146 TQE 148
+E
Sbjct: 181 VRE 183
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 34 KLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
KL +WD G + RS ++Y+ ++ G + V D R +
Sbjct: 46 KLNIWDVGGLKSLRSYWRNYFESTDGLIWVVDSADRQRMQ 85
>pdb|4F7C|A Chain A, Crystal Structure Of Bovine Cd1d With Bound
C12-Di-Sulfatide
pdb|4F7C|C Chain C, Crystal Structure Of Bovine Cd1d With Bound
C12-Di-Sulfatide
pdb|4F7E|A Chain A, Crystal Structure Of Bovine Cd1d With Bound
C16:0-Alpha-Galactosyl Ceramide
Length = 283
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 61 LLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFA 120
LLVY R+SF +W K H+E + GC+L +PR +SE+ +A
Sbjct: 70 LLVY----RSSFTR-DIWEFVEKLHVEYPLEIQIATGCEL------LPRNISESFLRAAF 118
Query: 121 SQNDILHFETSS 132
D+L F+ S
Sbjct: 119 QGRDVLSFQGMS 130
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYD 65
R+ ++D G ++FR + ++YY N + V D
Sbjct: 61 GRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVD 95
>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S08|B Chain B, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 32 RIKLQLWDTAGQ--ERFRSITKSYYRNSVGALLVYD 65
++ LQ W G+ +RF + Y+ N+ GA+ V D
Sbjct: 121 KMALQYWQAKGEARQRFLTFRNGYHGNTFGAMSVCD 156
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR 69
PT+G + + + ++D +GQ R+R++ + YY+ + V D + R
Sbjct: 53 PTIGFS-----IEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDR 103
>pdb|3T95|A Chain A, Crystal Structure Of Lsrb From Yersinia Pestis Complexed
With Autoinducer-2
Length = 335
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 15/109 (13%)
Query: 33 IKLQLWDTAGQERFRSI-TKSYYRNSVGALLVYDITSRASFEHIPV-------------- 77
+K+ WD+ + RS+ N +G++LV ++ E V
Sbjct: 105 VKILTWDSDTKPECRSVYINQGTPNQLGSMLVDMAANQVKKEQAKVAFFYSSPTVTDQNQ 164
Query: 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126
W+ EAK+ I+ P + +V + + + +E KA+A + I+
Sbjct: 165 WVNEAKKKIQQEHPGWEIVTTQFGYNDATKSLQTAEGILKAYADLDAII 213
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human Grlf1
(P190rhogap)
Length = 255
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 106 GVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149
GV R + +A A + +N + ETS+RS V+ AF+ + Q I
Sbjct: 211 GVERYIRDAHTFALSKKN-LQVVETSARSNVNVDLAFSTLVQLI 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,147,847
Number of Sequences: 62578
Number of extensions: 182003
Number of successful extensions: 1014
Number of sequences better than 100.0: 344
Number of HSP's better than 100.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 553
Number of HSP's gapped (non-prelim): 345
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)