Query psy38
Match_columns 193
No_of_seqs 132 out of 1389
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 17:45:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy38.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/38hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 4.7E-40 1E-44 234.4 16.2 176 2-193 23-204 (205)
2 KOG0092|consensus 100.0 8.2E-38 1.8E-42 222.2 16.1 152 2-158 19-175 (200)
3 KOG0094|consensus 100.0 4.6E-38 1E-42 223.7 14.2 147 2-152 36-187 (221)
4 KOG0091|consensus 100.0 1.7E-38 3.7E-43 219.7 11.5 185 3-193 23-213 (213)
5 KOG0098|consensus 100.0 1.3E-37 2.8E-42 219.8 14.5 159 3-166 21-184 (216)
6 KOG0078|consensus 100.0 2E-36 4.2E-41 218.7 16.1 154 2-160 26-184 (207)
7 KOG0086|consensus 100.0 5E-36 1.1E-40 205.5 12.9 185 3-192 24-214 (214)
8 KOG0079|consensus 100.0 3.6E-35 7.8E-40 200.1 11.2 145 3-153 23-172 (198)
9 KOG0087|consensus 100.0 2.3E-34 4.9E-39 207.3 15.1 152 4-160 30-186 (222)
10 KOG0394|consensus 100.0 7.9E-35 1.7E-39 205.3 11.8 152 2-155 23-183 (210)
11 KOG0080|consensus 100.0 2.1E-34 4.6E-39 198.9 12.4 147 3-153 26-177 (209)
12 cd04120 Rab12 Rab12 subfamily. 100.0 2.5E-33 5.4E-38 208.5 18.7 183 2-193 14-202 (202)
13 KOG0097|consensus 100.0 8.1E-34 1.8E-38 192.5 13.6 184 3-193 26-215 (215)
14 cd04121 Rab40 Rab40 subfamily. 100.0 4.6E-33 9.9E-38 205.2 17.0 156 2-163 20-180 (189)
15 cd04111 Rab39 Rab39 subfamily. 100.0 1.8E-32 4E-37 205.5 19.2 189 2-193 16-211 (211)
16 KOG0093|consensus 100.0 1.8E-33 3.9E-38 191.6 11.9 150 2-156 35-189 (193)
17 KOG0088|consensus 100.0 1.9E-33 4.1E-38 193.9 8.6 183 2-193 27-216 (218)
18 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 7.4E-32 1.6E-36 203.9 17.8 186 2-192 27-229 (232)
19 KOG0083|consensus 100.0 1.3E-32 2.7E-37 184.8 11.6 146 2-152 11-162 (192)
20 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.5E-31 3.2E-36 199.3 17.9 178 2-193 14-201 (201)
21 KOG0095|consensus 100.0 2.9E-32 6.2E-37 186.4 11.4 152 2-158 21-177 (213)
22 KOG0081|consensus 100.0 9.7E-32 2.1E-36 185.5 12.9 152 2-156 23-187 (219)
23 cd04144 Ras2 Ras2 subfamily. 100.0 8.3E-31 1.8E-35 193.6 16.1 150 2-156 13-169 (190)
24 PTZ00099 rab6; Provisional 100.0 3.5E-30 7.7E-35 187.8 18.9 141 6-151 3-143 (176)
25 PLN03110 Rab GTPase; Provision 100.0 3.4E-30 7.5E-35 193.9 18.8 150 3-157 27-181 (216)
26 cd04110 Rab35 Rab35 subfamily. 100.0 3.3E-30 7.1E-35 191.8 17.7 175 2-193 20-199 (199)
27 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.2E-30 2.6E-35 191.3 14.8 145 2-150 19-180 (182)
28 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 4.3E-30 9.3E-35 193.3 17.5 154 2-159 15-185 (222)
29 cd04133 Rop_like Rop subfamily 100.0 1.9E-30 4.2E-35 189.2 15.0 145 2-150 15-173 (176)
30 cd04126 Rab20 Rab20 subfamily. 100.0 4.1E-30 8.8E-35 193.3 17.1 150 2-157 14-197 (220)
31 cd04109 Rab28 Rab28 subfamily. 100.0 5.6E-30 1.2E-34 192.7 17.8 148 2-152 14-168 (215)
32 cd01875 RhoG RhoG subfamily. 100.0 4.4E-30 9.5E-35 189.9 15.7 146 2-151 17-178 (191)
33 PTZ00369 Ras-like protein; Pro 100.0 6.4E-30 1.4E-34 188.8 16.0 150 2-156 19-173 (189)
34 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 8.9E-30 1.9E-34 185.3 15.4 148 2-154 16-168 (172)
35 smart00176 RAN Ran (Ras-relate 100.0 1.1E-29 2.4E-34 188.6 15.9 143 2-152 9-156 (200)
36 cd04131 Rnd Rnd subfamily. Th 100.0 7.4E-30 1.6E-34 186.6 14.7 145 2-150 15-176 (178)
37 cd04112 Rab26 Rab26 subfamily. 100.0 3.2E-29 6.9E-34 185.3 16.7 147 2-153 14-166 (191)
38 PLN03108 Rab family protein; P 100.0 8.3E-29 1.8E-33 185.7 18.9 184 3-193 21-210 (210)
39 cd04122 Rab14 Rab14 subfamily. 100.0 3.3E-29 7.2E-34 181.1 15.8 145 2-151 16-165 (166)
40 cd04125 RabA_like RabA-like su 100.0 1.1E-28 2.3E-33 182.0 18.1 151 2-157 14-169 (188)
41 PF00071 Ras: Ras family; Int 100.0 8.8E-29 1.9E-33 177.9 15.6 143 3-150 14-161 (162)
42 cd04127 Rab27A Rab27a subfamil 100.0 8.8E-29 1.9E-33 181.0 15.6 147 3-152 19-179 (180)
43 cd04128 Spg1 Spg1p. Spg1p (se 100.0 9.8E-29 2.1E-33 181.3 15.3 147 2-151 14-167 (182)
44 cd04117 Rab15 Rab15 subfamily. 100.0 1.5E-28 3.4E-33 176.9 15.4 142 2-148 14-160 (161)
45 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 2.4E-28 5.2E-33 177.5 16.2 148 2-151 14-166 (170)
46 cd01874 Cdc42 Cdc42 subfamily. 100.0 3.1E-28 6.6E-33 177.7 14.5 144 2-149 15-174 (175)
47 cd04118 Rab24 Rab24 subfamily. 100.0 1.3E-27 2.8E-32 176.8 18.1 150 2-154 14-170 (193)
48 PLN03071 GTP-binding nuclear p 100.0 4.8E-28 1E-32 182.6 15.1 143 2-152 27-174 (219)
49 cd04134 Rho3 Rho3 subfamily. 100.0 5.1E-28 1.1E-32 178.6 14.9 146 2-151 14-175 (189)
50 cd04119 RJL RJL (RabJ-Like) su 100.0 7.5E-28 1.6E-32 173.6 15.4 145 2-150 14-167 (168)
51 cd01867 Rab8_Rab10_Rab13_like 100.0 8.5E-28 1.8E-32 173.9 15.5 144 3-151 18-166 (167)
52 cd04136 Rap_like Rap-like subf 100.0 4.9E-28 1.1E-32 174.0 14.1 143 2-149 15-162 (163)
53 cd01865 Rab3 Rab3 subfamily. 100.0 1.1E-27 2.3E-32 173.1 15.8 144 3-151 16-164 (165)
54 KOG0393|consensus 100.0 7.9E-28 1.7E-32 174.6 14.4 150 2-154 18-183 (198)
55 cd04175 Rap1 Rap1 subgroup. T 100.0 1E-27 2.2E-32 172.9 14.7 143 2-149 15-162 (164)
56 cd01873 RhoBTB RhoBTB subfamil 100.0 2.1E-27 4.4E-32 176.0 15.8 135 9-148 34-194 (195)
57 cd04132 Rho4_like Rho4-like su 100.0 5.1E-27 1.1E-31 172.8 16.8 152 2-156 14-173 (187)
58 cd01871 Rac1_like Rac1-like su 100.0 2.5E-27 5.4E-32 172.7 14.6 142 3-148 16-173 (174)
59 cd04176 Rap2 Rap2 subgroup. T 100.0 2.6E-27 5.7E-32 170.5 14.5 142 3-149 16-162 (163)
60 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 4.1E-27 8.8E-32 170.0 15.5 144 3-151 17-165 (166)
61 KOG0395|consensus 100.0 1.3E-26 2.7E-31 171.2 17.4 148 3-155 18-170 (196)
62 PLN03118 Rab family protein; P 100.0 1.7E-26 3.6E-31 173.3 18.1 147 2-152 28-179 (211)
63 cd00877 Ran Ran (Ras-related n 99.9 1.4E-26 3.1E-31 167.5 16.1 142 2-151 14-160 (166)
64 cd04115 Rab33B_Rab33A Rab33B/R 99.9 1E-26 2.2E-31 168.8 15.2 143 3-149 17-168 (170)
65 cd01868 Rab11_like Rab11-like. 99.9 1.7E-26 3.6E-31 166.6 15.7 142 3-149 18-164 (165)
66 cd04116 Rab9 Rab9 subfamily. 99.9 1.3E-26 2.9E-31 167.9 15.1 141 3-148 20-169 (170)
67 cd04138 H_N_K_Ras_like H-Ras/N 99.9 2.4E-26 5.3E-31 164.7 15.0 142 2-149 15-161 (162)
68 cd01866 Rab2 Rab2 subfamily. 99.9 3.4E-26 7.4E-31 165.7 15.9 144 3-151 19-167 (168)
69 cd04106 Rab23_lke Rab23-like s 99.9 3.7E-26 8.1E-31 164.1 15.1 141 2-148 14-161 (162)
70 smart00173 RAS Ras subfamily o 99.9 3.5E-26 7.6E-31 164.7 14.9 144 2-150 14-162 (164)
71 cd04145 M_R_Ras_like M-Ras/R-R 99.9 4.3E-26 9.3E-31 164.0 15.2 142 3-149 17-163 (164)
72 smart00174 RHO Rho (Ras homolo 99.9 2.7E-26 5.9E-31 166.9 14.3 146 2-151 12-173 (174)
73 cd01864 Rab19 Rab19 subfamily. 99.9 5.1E-26 1.1E-30 164.2 15.0 141 3-148 18-164 (165)
74 cd04103 Centaurin_gamma Centau 99.9 4E-26 8.6E-31 163.9 13.7 138 2-148 14-157 (158)
75 cd04113 Rab4 Rab4 subfamily. 99.9 7.5E-26 1.6E-30 162.5 14.9 141 3-148 15-160 (161)
76 cd04140 ARHI_like ARHI subfami 99.9 7E-26 1.5E-30 163.6 14.8 141 2-147 15-162 (165)
77 cd04101 RabL4 RabL4 (Rab-like4 99.9 1.1E-25 2.4E-30 162.1 15.1 136 9-149 28-163 (164)
78 cd04143 Rhes_like Rhes_like su 99.9 8.2E-26 1.8E-30 173.0 14.9 143 2-149 14-170 (247)
79 cd04142 RRP22 RRP22 subfamily. 99.9 1.3E-25 2.8E-30 166.8 15.0 147 2-152 14-176 (198)
80 cd04124 RabL2 RabL2 subfamily. 99.9 1.8E-25 4E-30 160.8 15.3 142 2-152 14-160 (161)
81 cd04177 RSR1 RSR1 subgroup. R 99.9 2.2E-25 4.8E-30 161.4 15.3 144 3-151 16-165 (168)
82 cd04130 Wrch_1 Wrch-1 subfamil 99.9 2.5E-25 5.4E-30 161.9 14.8 141 3-147 15-171 (173)
83 smart00175 RAB Rab subfamily o 99.9 5.7E-25 1.2E-29 158.1 15.6 144 3-151 15-163 (164)
84 cd01863 Rab18 Rab18 subfamily. 99.9 5.1E-25 1.1E-29 158.1 15.3 141 3-148 15-160 (161)
85 cd04148 RGK RGK subfamily. Th 99.9 5.2E-25 1.1E-29 166.3 16.0 148 2-155 14-168 (221)
86 cd01861 Rab6 Rab6 subfamily. 99.9 5.1E-25 1.1E-29 158.1 15.0 141 3-148 15-160 (161)
87 cd01860 Rab5_related Rab5-rela 99.9 8.6E-25 1.9E-29 157.2 15.7 142 3-149 16-162 (163)
88 cd04146 RERG_RasL11_like RERG/ 99.9 5E-25 1.1E-29 159.0 13.6 143 3-150 14-164 (165)
89 cd01892 Miro2 Miro2 subfamily. 99.9 5.3E-25 1.1E-29 159.7 13.0 142 2-150 18-166 (169)
90 cd01862 Rab7 Rab7 subfamily. 99.9 2.2E-24 4.9E-29 156.2 16.2 147 3-153 15-170 (172)
91 cd04135 Tc10 TC10 subfamily. 99.9 1.2E-24 2.6E-29 158.2 14.2 143 3-149 15-173 (174)
92 smart00177 ARF ARF-like small 99.9 3.6E-25 7.8E-30 161.5 9.5 138 2-149 27-173 (175)
93 cd04149 Arf6 Arf6 subfamily. 99.9 7.9E-25 1.7E-29 158.7 10.6 136 2-147 23-167 (168)
94 PLN00223 ADP-ribosylation fact 99.9 1.5E-24 3.2E-29 159.1 12.0 141 2-152 31-180 (181)
95 cd04123 Rab21 Rab21 subfamily. 99.9 8E-24 1.7E-28 151.6 15.4 142 3-149 15-161 (162)
96 cd04158 ARD1 ARD1 subfamily. 99.9 2.1E-24 4.6E-29 156.5 12.3 141 2-152 13-163 (169)
97 cd04150 Arf1_5_like Arf1-Arf5- 99.9 4.3E-25 9.3E-30 158.7 8.5 136 2-147 14-158 (159)
98 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 4.6E-24 1E-28 156.7 14.1 151 2-157 17-177 (183)
99 PTZ00133 ADP-ribosylation fact 99.9 5.1E-25 1.1E-29 161.6 8.6 141 3-153 32-181 (182)
100 cd04147 Ras_dva Ras-dva subfam 99.9 9.7E-24 2.1E-28 156.8 14.5 146 2-151 13-164 (198)
101 cd04114 Rab30 Rab30 subfamily. 99.9 1.9E-23 4.2E-28 151.1 15.6 142 3-149 22-168 (169)
102 cd04129 Rho2 Rho2 subfamily. 99.9 1.8E-23 3.9E-28 154.1 15.6 148 3-154 16-177 (187)
103 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 1.2E-24 2.7E-29 157.0 8.4 136 2-147 13-163 (164)
104 cd01870 RhoA_like RhoA-like su 99.9 2.8E-23 6.1E-28 151.1 14.8 143 3-149 16-174 (175)
105 cd04139 RalA_RalB RalA/RalB su 99.9 3E-23 6.6E-28 149.0 14.8 143 3-150 15-162 (164)
106 cd04137 RheB Rheb (Ras Homolog 99.9 2E-22 4.3E-27 147.4 15.4 146 3-153 16-166 (180)
107 cd00876 Ras Ras family. The R 99.9 1.2E-22 2.7E-27 145.2 13.8 142 3-149 14-160 (160)
108 KOG4252|consensus 99.9 4.3E-25 9.3E-30 155.5 0.9 147 3-155 35-186 (246)
109 cd04102 RabL3 RabL3 (Rab-like3 99.9 9.5E-23 2.1E-27 151.5 13.1 131 2-135 14-175 (202)
110 PTZ00132 GTP-binding nuclear p 99.9 3.4E-22 7.3E-27 150.4 15.7 142 3-152 24-170 (215)
111 cd04154 Arl2 Arl2 subfamily. 99.9 1.1E-22 2.3E-27 148.1 12.3 135 3-147 29-172 (173)
112 cd00154 Rab Rab family. Rab G 99.9 3.6E-22 7.9E-27 142.0 14.3 139 3-146 15-158 (159)
113 KOG0070|consensus 99.9 2.2E-22 4.7E-27 143.0 12.5 145 2-151 31-179 (181)
114 cd00157 Rho Rho (Ras homology) 99.9 9E-22 2E-26 142.4 14.3 141 3-147 15-170 (171)
115 KOG0073|consensus 99.9 7.3E-22 1.6E-26 137.2 12.5 146 2-152 30-180 (185)
116 cd04157 Arl6 Arl6 subfamily. 99.9 5.4E-23 1.2E-27 147.6 7.1 135 3-147 14-161 (162)
117 cd04151 Arl1 Arl1 subfamily. 99.9 7.1E-23 1.5E-27 146.8 7.7 135 3-147 14-157 (158)
118 cd04161 Arl2l1_Arl13_like Arl2 99.9 1.3E-22 2.9E-27 146.8 8.7 140 3-147 14-166 (167)
119 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 1.4E-22 3.1E-27 147.6 8.8 135 3-147 30-173 (174)
120 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.9E-22 4.2E-27 144.5 7.9 137 2-147 13-159 (160)
121 PLN00023 GTP-binding protein; 99.9 5.1E-21 1.1E-25 149.4 15.9 123 2-125 35-189 (334)
122 PF00025 Arf: ADP-ribosylation 99.9 9.7E-22 2.1E-26 143.4 8.7 137 3-149 29-175 (175)
123 cd04160 Arfrp1 Arfrp1 subfamil 99.9 4.3E-21 9.3E-26 138.5 11.3 128 10-147 32-166 (167)
124 cd01893 Miro1 Miro1 subfamily. 99.9 8.9E-21 1.9E-25 137.0 12.8 142 2-151 14-165 (166)
125 cd00879 Sar1 Sar1 subfamily. 99.9 6.3E-21 1.4E-25 140.6 11.7 137 2-148 33-189 (190)
126 cd00878 Arf_Arl Arf (ADP-ribos 99.9 3.3E-21 7.3E-26 137.9 9.5 135 3-147 14-157 (158)
127 smart00178 SAR Sar1p-like memb 99.8 5E-20 1.1E-24 135.4 11.6 137 2-148 31-183 (184)
128 KOG0071|consensus 99.8 4E-20 8.6E-25 125.5 9.1 143 2-149 31-177 (180)
129 KOG0075|consensus 99.8 4.3E-20 9.3E-25 126.3 9.2 137 8-149 45-181 (186)
130 KOG3883|consensus 99.8 8.9E-20 1.9E-24 125.6 10.7 140 9-152 37-177 (198)
131 cd04159 Arl10_like Arl10-like 99.8 3.3E-20 7.1E-25 132.0 9.0 135 3-147 14-158 (159)
132 KOG4423|consensus 99.8 7.4E-21 1.6E-25 134.9 -1.7 153 2-156 39-200 (229)
133 KOG1673|consensus 99.8 2.2E-18 4.8E-23 119.0 10.2 148 2-152 34-188 (205)
134 cd04155 Arl3 Arl3 subfamily. 99.8 6.1E-19 1.3E-23 128.0 8.0 135 3-147 29-172 (173)
135 COG1100 GTPase SAR1 and relate 99.8 1.2E-17 2.5E-22 125.7 14.1 152 2-155 19-190 (219)
136 cd01890 LepA LepA subfamily. 99.8 6.1E-18 1.3E-22 123.4 12.0 111 29-149 63-176 (179)
137 TIGR02528 EutP ethanolamine ut 99.7 3.8E-18 8.3E-23 120.0 7.3 119 2-146 14-141 (142)
138 KOG0072|consensus 99.7 7.2E-18 1.6E-22 115.1 7.8 144 3-151 33-180 (182)
139 KOG0096|consensus 99.7 7.4E-18 1.6E-22 120.1 7.8 137 7-151 34-170 (216)
140 cd01897 NOG NOG1 is a nucleola 99.7 1.4E-17 2.9E-22 120.3 8.6 112 31-149 45-167 (168)
141 cd01898 Obg Obg subfamily. Th 99.7 5.2E-17 1.1E-21 117.3 11.4 112 33-148 48-169 (170)
142 TIGR00231 small_GTP small GTP- 99.7 1.2E-16 2.5E-21 113.2 12.7 137 3-145 16-159 (161)
143 cd04171 SelB SelB subfamily. 99.7 4.2E-17 9.1E-22 117.0 9.6 126 12-147 32-163 (164)
144 cd00882 Ras_like_GTPase Ras-li 99.7 2.6E-16 5.6E-21 110.3 13.2 139 3-146 11-156 (157)
145 cd01879 FeoB Ferrous iron tran 99.7 3E-16 6.5E-21 111.9 12.3 132 3-148 11-155 (158)
146 cd01891 TypA_BipA TypA (tyrosi 99.7 8.3E-17 1.8E-21 119.2 8.0 121 13-141 46-173 (194)
147 KOG0076|consensus 99.7 4.2E-17 9.1E-22 114.7 5.7 138 10-152 51-189 (197)
148 PRK12299 obgE GTPase CgtA; Rev 99.7 7.4E-16 1.6E-20 122.6 13.5 116 33-151 206-329 (335)
149 KOG0074|consensus 99.7 8.8E-17 1.9E-21 109.5 5.1 141 3-147 32-176 (185)
150 TIGR01393 lepA GTP-binding pro 99.6 1.3E-15 2.8E-20 129.5 11.7 123 17-149 50-179 (595)
151 cd01881 Obg_like The Obg-like 99.6 1.6E-15 3.5E-20 110.0 9.4 113 33-148 44-175 (176)
152 PRK03003 GTP-binding protein D 99.6 1.3E-15 2.8E-20 126.9 9.8 141 3-151 226-383 (472)
153 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 3.6E-15 7.7E-20 107.4 10.6 139 3-149 15-165 (168)
154 TIGR02729 Obg_CgtA Obg family 99.6 6.1E-15 1.3E-19 117.3 12.2 113 33-149 205-328 (329)
155 cd01878 HflX HflX subfamily. 99.6 3.7E-15 8.1E-20 111.1 10.0 132 3-148 56-203 (204)
156 TIGR00450 mnmE_trmE_thdF tRNA 99.6 9.3E-15 2E-19 120.4 12.7 132 3-154 218-364 (442)
157 PRK04213 GTP-binding protein; 99.6 8.4E-16 1.8E-20 114.3 5.9 133 2-150 23-192 (201)
158 TIGR00487 IF-2 translation ini 99.6 1.4E-14 3E-19 122.8 11.8 130 2-147 101-247 (587)
159 PRK03003 GTP-binding protein D 99.6 1.4E-14 3.1E-19 120.7 11.2 133 3-151 53-200 (472)
160 cd01894 EngA1 EngA1 subfamily. 99.6 3.6E-14 7.7E-19 100.9 10.8 116 18-149 33-157 (157)
161 TIGR03156 GTP_HflX GTP-binding 99.6 2.9E-14 6.4E-19 114.3 11.4 131 3-148 204-350 (351)
162 PRK05291 trmE tRNA modificatio 99.6 2.5E-14 5.5E-19 118.3 10.5 128 3-151 230-371 (449)
163 TIGR00437 feoB ferrous iron tr 99.6 5.2E-14 1.1E-18 119.8 12.3 134 2-149 8-154 (591)
164 PF08477 Miro: Miro-like prote 99.5 1.9E-14 4E-19 98.1 7.4 96 3-101 14-119 (119)
165 TIGR00475 selB selenocysteine- 99.5 4.4E-14 9.6E-19 120.1 11.2 129 9-151 29-167 (581)
166 TIGR03594 GTPase_EngA ribosome 99.5 2.8E-14 6E-19 117.8 9.4 122 18-151 208-345 (429)
167 PRK15494 era GTPase Era; Provi 99.5 5.3E-14 1.2E-18 112.5 10.7 133 2-151 66-217 (339)
168 cd04164 trmE TrmE (MnmE, ThdF, 99.5 1.2E-13 2.6E-18 98.0 11.3 116 14-149 33-156 (157)
169 PRK12297 obgE GTPase CgtA; Rev 99.5 2.6E-13 5.5E-18 110.9 14.2 113 33-152 206-329 (424)
170 CHL00189 infB translation init 99.5 1.1E-13 2.4E-18 119.3 11.4 107 29-149 291-409 (742)
171 PRK15467 ethanolamine utilizat 99.5 7.7E-14 1.7E-18 100.1 8.7 101 37-151 41-148 (158)
172 PRK05306 infB translation init 99.5 1.7E-13 3.7E-18 119.0 11.8 135 2-148 304-450 (787)
173 TIGR00436 era GTP-binding prot 99.5 2.2E-13 4.7E-18 105.9 11.3 107 33-149 48-163 (270)
174 TIGR00157 ribosome small subun 99.5 1.2E-13 2.7E-18 105.7 9.3 96 44-147 24-120 (245)
175 PRK05433 GTP-binding protein L 99.5 4E-13 8.6E-18 114.5 13.2 112 29-150 70-184 (600)
176 cd01889 SelB_euk SelB subfamil 99.5 2.5E-13 5.5E-18 100.3 10.5 116 30-151 65-187 (192)
177 cd01888 eIF2_gamma eIF2-gamma 99.5 1.7E-13 3.7E-18 102.2 9.3 113 33-149 83-198 (203)
178 PRK12296 obgE GTPase CgtA; Rev 99.5 7.5E-13 1.6E-17 109.7 12.3 126 21-153 197-343 (500)
179 PRK11058 GTPase HflX; Provisio 99.5 8.6E-13 1.9E-17 108.3 11.7 126 18-154 232-366 (426)
180 cd00881 GTP_translation_factor 99.4 1.3E-12 2.8E-17 95.6 10.8 112 32-149 61-186 (189)
181 TIGR00483 EF-1_alpha translati 99.4 3.5E-13 7.6E-18 111.1 8.3 129 10-143 65-200 (426)
182 PRK00093 GTP-binding protein D 99.4 1.3E-12 2.9E-17 108.0 11.4 116 14-147 33-159 (435)
183 COG2229 Predicted GTPase [Gene 99.4 4.8E-12 1E-16 90.4 12.1 122 14-148 53-176 (187)
184 PRK09518 bifunctional cytidyla 99.4 7.8E-13 1.7E-17 115.2 9.8 135 3-151 465-622 (712)
185 cd00066 G-alpha G protein alph 99.4 2.1E-12 4.6E-17 102.5 11.3 143 9-153 131-314 (317)
186 cd04105 SR_beta Signal recogni 99.4 9.4E-13 2E-17 98.2 7.6 76 30-105 45-124 (203)
187 cd01895 EngA2 EngA2 subfamily. 99.4 2.1E-12 4.6E-17 93.0 9.0 120 18-148 38-173 (174)
188 cd00880 Era_like Era (E. coli 99.4 2.5E-12 5.4E-17 90.9 9.2 109 32-148 44-162 (163)
189 TIGR00491 aIF-2 translation in 99.4 2.4E-12 5.2E-17 109.2 10.2 108 34-149 70-215 (590)
190 PRK09518 bifunctional cytidyla 99.4 5.7E-12 1.2E-16 109.9 12.6 132 3-151 290-437 (712)
191 PRK00093 GTP-binding protein D 99.4 3.1E-12 6.7E-17 105.8 9.5 126 18-151 209-345 (435)
192 PRK10512 selenocysteinyl-tRNA- 99.4 7.9E-12 1.7E-16 106.9 11.7 129 11-149 31-165 (614)
193 PRK00454 engB GTP-binding prot 99.3 5.9E-12 1.3E-16 93.0 9.1 137 3-149 39-193 (196)
194 TIGR03594 GTPase_EngA ribosome 99.3 6.2E-12 1.3E-16 103.9 10.0 117 16-150 33-160 (429)
195 TIGR01394 TypA_BipA GTP-bindin 99.3 5.4E-12 1.2E-16 107.4 9.8 126 16-149 48-190 (594)
196 PRK12298 obgE GTPase CgtA; Rev 99.3 1.9E-11 4.1E-16 99.4 12.5 116 33-152 207-335 (390)
197 PRK10218 GTP-binding protein; 99.3 1.9E-11 4.2E-16 104.1 13.0 129 13-149 49-194 (607)
198 cd04163 Era Era subfamily. Er 99.3 1.7E-11 3.8E-16 87.4 10.2 109 31-148 49-167 (168)
199 cd01896 DRG The developmentall 99.3 5E-11 1.1E-15 90.7 12.6 117 20-149 37-225 (233)
200 smart00275 G_alpha G protein a 99.3 7.4E-11 1.6E-15 94.4 13.4 122 33-154 184-338 (342)
201 TIGR03598 GTPase_YsxC ribosome 99.3 6.8E-12 1.5E-16 91.7 6.9 128 2-139 32-179 (179)
202 PRK12317 elongation factor 1-a 99.3 2.3E-11 5.1E-16 100.3 10.7 126 13-143 67-198 (425)
203 PRK09554 feoB ferrous iron tra 99.3 4.4E-11 9.4E-16 104.5 12.7 135 3-149 18-167 (772)
204 KOG0462|consensus 99.3 4.4E-11 9.6E-16 98.1 11.8 125 18-149 110-234 (650)
205 PRK00089 era GTPase Era; Revie 99.3 2.5E-11 5.4E-16 95.4 9.7 110 33-150 53-171 (292)
206 COG0481 LepA Membrane GTPase L 99.3 1.3E-10 2.9E-15 94.0 13.2 113 28-150 71-186 (603)
207 PF00009 GTP_EFTU: Elongation 99.2 4.5E-11 9.7E-16 88.1 9.0 114 30-149 67-186 (188)
208 TIGR03680 eif2g_arch translati 99.2 4.6E-11 1E-15 97.9 9.4 114 32-149 79-195 (406)
209 PRK04000 translation initiatio 99.2 1E-10 2.2E-15 96.0 9.8 109 33-149 85-200 (411)
210 cd04166 CysN_ATPS CysN_ATPS su 99.2 1.8E-10 4E-15 86.2 9.9 121 14-141 61-185 (208)
211 cd04168 TetM_like Tet(M)-like 99.2 7.9E-10 1.7E-14 84.3 12.1 79 20-104 52-130 (237)
212 cd01876 YihA_EngB The YihA (En 99.2 1.6E-10 3.6E-15 82.6 7.9 127 10-148 26-169 (170)
213 cd01883 EF1_alpha Eukaryotic e 99.2 2.5E-10 5.4E-15 86.1 9.1 116 18-139 65-194 (219)
214 PRK04004 translation initiatio 99.1 1.3E-10 2.9E-15 98.9 8.2 100 35-155 73-175 (586)
215 PRK14845 translation initiatio 99.1 6.7E-10 1.5E-14 99.1 12.1 106 35-148 528-671 (1049)
216 PF02421 FeoB_N: Ferrous iron 99.1 2.7E-10 5.9E-15 81.0 7.4 114 18-145 35-156 (156)
217 KOG0082|consensus 99.1 6.3E-10 1.4E-14 88.1 9.3 125 31-155 193-349 (354)
218 COG0532 InfB Translation initi 99.1 2.8E-09 6.1E-14 87.7 13.0 119 19-151 41-171 (509)
219 KOG0077|consensus 99.1 1.3E-10 2.8E-15 81.6 3.8 136 3-148 35-191 (193)
220 COG0486 ThdF Predicted GTPase 99.1 1.6E-09 3.5E-14 87.9 10.4 132 3-152 232-378 (454)
221 TIGR00485 EF-Tu translation el 99.1 1.5E-09 3.2E-14 88.8 10.3 108 24-136 67-179 (394)
222 cd04167 Snu114p Snu114p subfam 99.0 1.3E-09 2.9E-14 81.8 8.6 70 29-103 67-136 (213)
223 cd01855 YqeH YqeH. YqeH is an 99.0 1.8E-09 3.9E-14 79.6 8.6 93 46-149 24-124 (190)
224 PLN00043 elongation factor 1-a 99.0 1.4E-09 3.1E-14 90.0 8.1 108 29-140 81-203 (447)
225 PRK00741 prfC peptide chain re 99.0 6.6E-09 1.4E-13 87.6 11.1 82 17-104 64-145 (526)
226 PRK12736 elongation factor Tu; 99.0 6.1E-09 1.3E-13 85.2 10.6 100 29-136 71-179 (394)
227 KOG1145|consensus 99.0 9.3E-09 2E-13 84.8 11.5 115 20-150 190-316 (683)
228 cd01885 EF2 EF2 (for archaea a 99.0 3.9E-09 8.4E-14 79.7 8.4 69 30-103 70-138 (222)
229 cd01854 YjeQ_engC YjeQ/EngC. 99.0 1.4E-08 2.9E-13 79.7 11.7 86 53-147 75-161 (287)
230 cd01884 EF_Tu EF-Tu subfamily. 99.0 1E-08 2.2E-13 76.0 10.4 111 24-139 57-172 (195)
231 cd04165 GTPBP1_like GTPBP1-lik 98.9 1.4E-08 2.9E-13 76.9 10.5 106 33-146 84-219 (224)
232 cd01859 MJ1464 MJ1464. This f 98.9 5.4E-09 1.2E-13 74.6 7.9 94 47-150 3-96 (156)
233 COG1160 Predicted GTPases [Gen 98.9 2.3E-08 5.1E-13 81.1 12.2 122 18-150 214-351 (444)
234 PRK00098 GTPase RsgA; Reviewed 98.9 4.5E-09 9.7E-14 82.9 7.9 86 54-147 78-164 (298)
235 PF10662 PduV-EutP: Ethanolami 98.9 8.5E-09 1.8E-13 71.9 8.3 99 36-146 39-142 (143)
236 PRK12735 elongation factor Tu; 98.9 1.2E-08 2.7E-13 83.4 10.4 114 29-147 71-200 (396)
237 PRK12289 GTPase RsgA; Reviewed 98.9 1E-08 2.2E-13 82.3 9.6 92 48-148 81-173 (352)
238 cd04169 RF3 RF3 subfamily. Pe 98.9 1.3E-08 2.9E-13 78.9 10.0 79 20-104 59-137 (267)
239 KOG0705|consensus 98.9 1.5E-08 3.3E-13 83.5 10.6 146 2-155 44-194 (749)
240 PF04670 Gtr1_RagA: Gtr1/RagA 98.9 7.2E-09 1.6E-13 78.4 8.2 141 13-160 32-186 (232)
241 KOG1489|consensus 98.9 1.5E-08 3.3E-13 78.5 9.7 108 34-147 245-364 (366)
242 KOG1707|consensus 98.9 1.5E-09 3.3E-14 89.7 3.9 119 31-152 54-177 (625)
243 PRK13351 elongation factor G; 98.9 1.2E-08 2.5E-13 89.1 9.2 69 31-104 71-139 (687)
244 TIGR02034 CysN sulfate adenyly 98.9 2.5E-08 5.5E-13 81.9 10.5 115 18-141 68-188 (406)
245 COG1160 Predicted GTPases [Gen 98.9 2E-08 4.2E-13 81.5 9.4 124 9-149 31-164 (444)
246 PRK12288 GTPase RsgA; Reviewed 98.8 2E-08 4.3E-13 80.6 9.2 89 54-148 118-206 (347)
247 TIGR03597 GTPase_YqeH ribosome 98.8 1.6E-08 3.5E-13 81.7 8.4 95 43-148 50-151 (360)
248 PRK05124 cysN sulfate adenylyl 98.8 2.5E-08 5.4E-13 83.3 9.0 114 18-141 95-216 (474)
249 COG1159 Era GTPase [General fu 98.8 4.5E-08 9.9E-13 75.4 9.5 113 31-151 52-173 (298)
250 PTZ00327 eukaryotic translatio 98.8 3.7E-08 8.1E-13 81.7 9.4 112 33-148 117-231 (460)
251 PRK12740 elongation factor G; 98.8 7.7E-08 1.7E-12 83.8 11.4 78 19-104 49-126 (668)
252 cd01899 Ygr210 Ygr210 subfamil 98.8 9.4E-08 2E-12 75.8 10.9 53 90-149 214-268 (318)
253 PRK05506 bifunctional sulfate 98.7 4.4E-08 9.5E-13 84.7 8.2 115 18-140 92-211 (632)
254 PRK13768 GTPase; Provisional 98.7 1E-07 2.2E-12 73.5 8.2 114 34-149 98-246 (253)
255 PF00503 G-alpha: G-protein al 98.7 1.6E-07 3.5E-12 76.8 9.4 119 31-149 234-389 (389)
256 KOG0090|consensus 98.7 4.5E-07 9.7E-12 66.7 10.6 113 35-148 84-237 (238)
257 COG2262 HflX GTPases [General 98.7 6.4E-07 1.4E-11 71.9 12.1 131 19-161 228-367 (411)
258 cd01886 EF-G Elongation factor 98.6 3.6E-07 7.7E-12 71.1 10.2 79 18-104 52-130 (270)
259 PRK09866 hypothetical protein; 98.6 4.4E-07 9.6E-12 77.1 11.2 110 32-147 229-350 (741)
260 PRK00049 elongation factor Tu; 98.6 7.1E-07 1.5E-11 73.1 11.4 101 29-137 71-180 (396)
261 TIGR00503 prfC peptide chain r 98.6 2.8E-07 6E-12 77.9 9.1 82 17-104 65-146 (527)
262 PLN03126 Elongation factor Tu; 98.6 2.5E-07 5.4E-12 77.3 8.6 103 31-138 142-250 (478)
263 CHL00071 tufA elongation facto 98.6 4.2E-07 9.1E-12 74.8 9.6 103 31-138 73-181 (409)
264 cd04104 p47_IIGP_like p47 (47- 98.6 3.9E-07 8.4E-12 67.6 8.1 113 33-153 52-187 (197)
265 cd01850 CDC_Septin CDC/Septin. 98.6 3.6E-07 7.7E-12 71.3 8.1 114 12-133 43-185 (276)
266 PTZ00141 elongation factor 1- 98.5 8.9E-07 1.9E-11 73.6 10.4 109 29-140 81-203 (446)
267 PLN03127 Elongation factor Tu; 98.5 9.2E-07 2E-11 73.4 10.5 126 11-147 105-249 (447)
268 PF09439 SRPRB: Signal recogni 98.5 2.4E-07 5.1E-12 67.5 5.6 75 31-105 47-127 (181)
269 COG1217 TypA Predicted membran 98.5 1.8E-06 3.9E-11 70.4 10.5 126 16-149 52-194 (603)
270 smart00010 small_GTPase Small 98.5 4.2E-07 9.2E-12 61.7 5.8 80 46-139 36-115 (124)
271 COG5256 TEF1 Translation elong 98.4 1.5E-06 3.2E-11 69.9 9.1 131 5-141 60-202 (428)
272 cd04170 EF-G_bact Elongation f 98.4 1.8E-06 3.8E-11 67.1 9.3 100 32-141 63-164 (268)
273 TIGR00484 EF-G translation elo 98.4 1.1E-06 2.4E-11 76.8 9.0 79 18-104 63-141 (689)
274 PRK12739 elongation factor G; 98.4 3.3E-06 7.2E-11 73.9 11.7 84 13-104 56-139 (691)
275 cd01849 YlqF_related_GTPase Yl 98.4 1.7E-06 3.7E-11 61.7 8.3 85 58-150 1-85 (155)
276 KOG1707|consensus 98.4 1.8E-06 3.9E-11 72.0 9.4 142 2-153 443-586 (625)
277 cd01858 NGP_1 NGP-1. Autoanti 98.4 2.3E-06 5E-11 61.1 7.7 88 53-149 5-94 (157)
278 COG0536 Obg Predicted GTPase [ 98.4 6.2E-06 1.3E-10 64.9 10.3 117 33-153 207-336 (369)
279 PF05783 DLIC: Dynein light in 98.3 4.2E-06 9.1E-11 69.6 9.8 150 3-152 40-266 (472)
280 COG2895 CysN GTPases - Sulfate 98.3 5.4E-06 1.2E-10 65.5 9.8 114 15-139 71-192 (431)
281 COG0218 Predicted GTPase [Gene 98.3 4.1E-06 8.8E-11 61.4 7.9 108 35-151 72-198 (200)
282 TIGR00490 aEF-2 translation el 98.3 1.8E-06 3.9E-11 75.8 7.2 87 12-104 66-152 (720)
283 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 3.1E-06 6.6E-11 59.4 6.9 77 51-137 6-84 (141)
284 COG5257 GCD11 Translation init 98.3 5.3E-06 1.2E-10 64.8 8.5 114 33-150 86-202 (415)
285 PRK13796 GTPase YqeH; Provisio 98.3 5.9E-06 1.3E-10 67.0 9.1 83 55-148 67-157 (365)
286 KOG0099|consensus 98.3 4.8E-06 1E-10 63.3 7.6 140 9-151 172-370 (379)
287 KOG1144|consensus 98.3 8.7E-06 1.9E-10 69.8 9.8 112 34-153 541-690 (1064)
288 KOG1423|consensus 98.2 1.6E-05 3.4E-10 61.8 10.4 116 30-151 117-272 (379)
289 COG4917 EutP Ethanolamine util 98.2 5.7E-06 1.2E-10 55.9 6.7 98 37-147 41-143 (148)
290 COG1084 Predicted GTPase [Gene 98.2 1.1E-05 2.3E-10 63.3 9.2 112 33-152 215-338 (346)
291 COG0050 TufB GTPases - transla 98.2 3.4E-06 7.5E-11 65.1 6.3 110 17-134 60-177 (394)
292 COG1163 DRG Predicted GTPase [ 98.2 1.9E-05 4.2E-10 61.8 10.4 49 91-149 240-288 (365)
293 TIGR00101 ureG urease accessor 98.2 1.1E-05 2.3E-10 60.1 8.6 102 33-149 92-195 (199)
294 KOG1191|consensus 98.2 7.7E-06 1.7E-10 67.1 7.7 132 17-154 303-454 (531)
295 KOG3905|consensus 98.2 2.8E-05 6.1E-10 61.0 10.1 150 2-152 66-292 (473)
296 COG0370 FeoB Fe2+ transport sy 98.1 3.5E-05 7.6E-10 65.8 11.3 119 18-150 38-164 (653)
297 cd01856 YlqF YlqF. Proteins o 98.1 7.6E-06 1.7E-10 59.3 6.5 91 48-150 11-101 (171)
298 PRK00007 elongation factor G; 98.1 1.9E-05 4.1E-10 69.2 9.8 81 16-104 61-141 (693)
299 KOG0458|consensus 98.1 2.9E-05 6.3E-10 64.9 9.8 121 15-141 238-373 (603)
300 COG3276 SelB Selenocysteine-sp 98.1 4.5E-05 9.8E-10 62.0 10.3 119 18-150 38-162 (447)
301 TIGR03596 GTPase_YlqF ribosome 98.1 2.4E-05 5.2E-10 61.1 8.6 90 50-151 15-104 (276)
302 PRK01889 GTPase RsgA; Reviewed 98.1 2.4E-05 5.2E-10 63.3 8.4 83 54-146 110-193 (356)
303 TIGR00073 hypB hydrogenase acc 98.0 3.6E-05 7.8E-10 57.5 8.5 55 91-148 149-205 (207)
304 PRK09602 translation-associate 98.0 6.8E-05 1.5E-09 61.4 10.2 36 32-67 71-113 (396)
305 PRK09563 rbgA GTPase YlqF; Rev 98.0 5.5E-05 1.2E-09 59.5 8.9 91 50-152 18-108 (287)
306 PRK09435 membrane ATPase/prote 98.0 0.0001 2.3E-09 58.8 10.5 111 33-156 149-266 (332)
307 COG4108 PrfC Peptide chain rel 98.0 6.3E-05 1.4E-09 61.2 9.1 101 18-129 67-167 (528)
308 KOG3886|consensus 97.9 2.1E-05 4.5E-10 58.8 5.4 101 32-134 52-163 (295)
309 COG1162 Predicted GTPases [Gen 97.9 0.00012 2.5E-09 57.3 9.2 95 47-148 70-165 (301)
310 KOG1490|consensus 97.9 6.6E-05 1.4E-09 62.0 8.0 116 33-153 215-344 (620)
311 KOG0085|consensus 97.8 1.6E-05 3.6E-10 59.5 3.2 144 9-153 169-352 (359)
312 KOG0460|consensus 97.8 6.7E-05 1.5E-09 59.2 6.0 109 17-133 102-218 (449)
313 PF03029 ATP_bind_1: Conserved 97.7 0.00072 1.6E-08 51.7 11.3 113 34-149 92-236 (238)
314 TIGR00750 lao LAO/AO transport 97.7 0.00023 4.9E-09 56.3 8.6 107 32-150 126-238 (300)
315 PRK07560 elongation factor EF- 97.7 0.00011 2.5E-09 64.8 7.1 71 29-104 83-153 (731)
316 PF01926 MMR_HSR1: 50S ribosom 97.7 0.00046 9.9E-09 46.4 8.4 71 20-99 37-116 (116)
317 PLN00116 translation elongatio 97.6 0.00013 2.8E-09 65.4 5.9 68 31-103 96-163 (843)
318 KOG0461|consensus 97.6 0.00057 1.2E-08 54.3 8.4 113 29-151 66-194 (522)
319 KOG0468|consensus 97.6 0.00013 2.7E-09 62.3 5.1 69 29-102 193-261 (971)
320 PTZ00416 elongation factor 2; 97.5 0.0002 4.3E-09 64.1 5.7 68 31-103 90-157 (836)
321 COG0480 FusA Translation elong 97.5 0.00029 6.2E-09 61.5 6.4 68 32-104 75-142 (697)
322 KOG1532|consensus 97.2 0.0047 1E-07 47.8 9.7 117 33-152 116-266 (366)
323 PF06858 NOG1: Nucleolar GTP-b 97.2 0.0015 3.3E-08 38.0 5.5 43 57-101 14-58 (58)
324 COG3596 Predicted GTPase [Gene 97.2 0.0049 1.1E-07 47.6 9.3 115 33-150 87-222 (296)
325 cd01852 AIG1 AIG1 (avrRpt2-ind 97.2 0.0073 1.6E-07 44.6 10.1 125 22-151 41-185 (196)
326 TIGR02836 spore_IV_A stage IV 97.1 0.012 2.5E-07 48.5 11.1 113 24-145 82-232 (492)
327 cd01882 BMS1 Bms1. Bms1 is an 97.1 0.0048 1E-07 46.7 8.4 99 31-137 81-183 (225)
328 KOG3887|consensus 97.0 0.01 2.2E-07 45.1 9.4 124 31-156 73-208 (347)
329 COG0378 HypB Ni2+-binding GTPa 96.9 0.002 4.4E-08 47.2 4.9 99 33-149 97-200 (202)
330 KOG0466|consensus 96.9 0.0021 4.5E-08 50.4 4.9 109 33-149 125-240 (466)
331 PF00350 Dynamin_N: Dynamin fa 96.7 0.0031 6.6E-08 45.1 4.8 64 33-100 101-168 (168)
332 cd03110 Fer4_NifH_child This p 96.6 0.022 4.7E-07 41.3 8.7 85 31-128 91-175 (179)
333 KOG0467|consensus 96.6 0.0049 1.1E-07 53.6 5.9 82 11-102 51-136 (887)
334 PRK10463 hydrogenase nickel in 96.6 0.0051 1.1E-07 48.2 5.5 55 91-148 231-287 (290)
335 TIGR00991 3a0901s02IAP34 GTP-b 96.5 0.016 3.4E-07 45.9 7.8 70 33-103 86-166 (313)
336 COG5258 GTPBP1 GTPase [General 96.5 0.028 6.1E-07 45.6 9.2 108 34-147 202-335 (527)
337 KOG0464|consensus 96.5 0.0012 2.6E-08 53.7 1.4 82 17-104 87-168 (753)
338 smart00053 DYNc Dynamin, GTPas 96.5 0.017 3.8E-07 44.1 7.5 69 32-104 124-206 (240)
339 KOG0465|consensus 96.4 0.043 9.3E-07 46.9 10.1 70 31-105 102-171 (721)
340 cd04178 Nucleostemin_like Nucl 96.1 0.019 4.1E-07 41.6 5.9 44 58-104 1-44 (172)
341 PTZ00258 GTP-binding protein; 96.0 0.082 1.8E-06 43.4 9.6 44 90-136 220-266 (390)
342 PF03308 ArgK: ArgK protein; 95.9 0.016 3.5E-07 44.6 4.8 106 33-156 122-236 (266)
343 cd01853 Toc34_like Toc34-like 95.8 0.061 1.3E-06 41.5 7.7 70 33-103 79-162 (249)
344 COG1703 ArgK Putative periplas 95.8 0.065 1.4E-06 42.1 7.6 109 33-156 144-260 (323)
345 KOG1143|consensus 95.6 0.17 3.8E-06 41.1 9.6 103 33-140 249-378 (591)
346 KOG4273|consensus 95.5 0.074 1.6E-06 40.8 7.0 96 54-152 76-224 (418)
347 PF05049 IIGP: Interferon-indu 94.7 0.085 1.8E-06 43.0 5.7 109 34-149 87-217 (376)
348 KOG0469|consensus 94.7 0.055 1.2E-06 45.5 4.6 69 29-102 94-162 (842)
349 COG1161 Predicted GTPases [Gen 94.6 0.11 2.4E-06 41.6 6.1 92 41-143 18-110 (322)
350 KOG3929|consensus 93.8 0.13 2.9E-06 39.6 4.7 69 2-71 57-134 (363)
351 KOG0447|consensus 93.7 1.5 3.2E-05 37.7 10.9 97 33-135 412-526 (980)
352 KOG1424|consensus 93.5 0.15 3.3E-06 42.8 5.0 77 47-134 166-244 (562)
353 COG3640 CooC CO dehydrogenase 93.5 1 2.2E-05 34.4 8.8 63 33-102 134-197 (255)
354 KOG1954|consensus 93.4 0.13 2.7E-06 41.8 4.2 67 34-104 148-225 (532)
355 PRK09601 GTP-binding protein Y 93.4 1.6 3.5E-05 35.6 10.5 41 91-133 200-240 (364)
356 PF04548 AIG1: AIG1 family; I 93.4 1.3 2.9E-05 33.1 9.5 128 20-152 39-188 (212)
357 TIGR00064 ftsY signal recognit 93.3 0.39 8.4E-06 37.5 6.8 101 32-149 154-267 (272)
358 PF11111 CENP-M: Centromere pr 93.3 1.4 3.1E-05 31.9 9.0 90 56-154 64-153 (176)
359 KOG0459|consensus 92.9 0.69 1.5E-05 38.0 7.6 112 32-143 156-279 (501)
360 PHA02518 ParA-like protein; Pr 91.5 1.7 3.7E-05 32.0 8.1 68 32-102 76-145 (211)
361 KOG0463|consensus 91.1 0.99 2.2E-05 36.9 6.6 30 119-149 327-356 (641)
362 KOG0448|consensus 90.7 1.5 3.2E-05 38.4 7.7 66 34-104 207-275 (749)
363 PRK14974 cell division protein 90.6 1.9 4.2E-05 34.8 8.0 103 33-151 223-331 (336)
364 COG1149 MinD superfamily P-loo 90.5 1.8 3.9E-05 33.7 7.4 79 34-128 165-243 (284)
365 PF00735 Septin: Septin; Inte 90.3 4.5 9.8E-05 31.8 9.7 106 14-129 45-180 (281)
366 PRK10416 signal recognition pa 90.3 1.3 2.8E-05 35.4 6.8 102 32-150 196-310 (318)
367 PF14331 ImcF-related_N: ImcF- 90.2 0.71 1.5E-05 35.9 5.1 95 56-154 25-135 (266)
368 KOG2484|consensus 90.1 0.56 1.2E-05 38.4 4.5 54 45-103 135-190 (435)
369 PF09419 PGP_phosphatase: Mito 90.0 5.7 0.00012 28.7 9.3 85 54-145 36-127 (168)
370 cd02038 FleN-like FleN is a me 89.4 1.9 4.1E-05 29.8 6.3 65 33-102 45-109 (139)
371 COG5019 CDC3 Septin family pro 89.2 9.3 0.0002 31.1 10.7 110 12-129 62-200 (373)
372 cd02036 MinD Bacterial cell di 89.2 6.2 0.00013 28.0 9.2 84 34-128 64-147 (179)
373 COG4963 CpaE Flp pilus assembl 89.1 4.5 9.8E-05 32.9 8.9 70 31-104 216-285 (366)
374 TIGR00993 3a0901s04IAP86 chlor 88.2 2.9 6.4E-05 36.9 7.7 74 29-104 164-250 (763)
375 cd03111 CpaE_like This protein 87.7 3.7 8E-05 27.0 6.6 63 34-99 44-106 (106)
376 PRK13505 formate--tetrahydrofo 87.3 5.3 0.00011 34.4 8.6 71 71-150 357-429 (557)
377 TIGR03348 VI_IcmF type VI secr 86.8 1.3 2.8E-05 41.8 5.3 69 35-104 163-257 (1169)
378 KOG2423|consensus 83.7 5.5 0.00012 33.0 6.7 95 49-151 203-300 (572)
379 PRK00771 signal recognition pa 81.6 9.8 0.00021 32.0 7.8 85 34-132 177-267 (437)
380 KOG2486|consensus 81.5 0.82 1.8E-05 35.8 1.3 109 34-147 184-313 (320)
381 PRK13185 chlL protochlorophyll 80.9 21 0.00046 27.5 9.1 68 32-101 117-185 (270)
382 TIGR00959 ffh signal recogniti 80.7 11 0.00024 31.5 7.8 86 33-132 183-274 (428)
383 KOG1547|consensus 80.1 26 0.00056 27.2 9.4 115 12-134 84-227 (336)
384 cd01900 YchF YchF subfamily. 79.6 3.8 8.2E-05 32.1 4.5 34 34-67 63-103 (274)
385 TIGR03371 cellulose_yhjQ cellu 79.5 22 0.00047 26.8 8.7 66 34-103 116-181 (246)
386 KOG1486|consensus 78.0 31 0.00067 27.0 11.7 43 25-70 104-153 (364)
387 cd03112 CobW_like The function 77.6 7.2 0.00016 27.6 5.1 63 33-102 87-158 (158)
388 KOG0410|consensus 76.8 2.5 5.4E-05 34.0 2.7 116 23-154 218-345 (410)
389 PRK13849 putative crown gall t 76.8 22 0.00048 27.0 7.9 67 32-101 83-151 (231)
390 cd02117 NifH_like This family 76.6 28 0.00061 25.8 9.8 89 32-128 116-206 (212)
391 KOG2655|consensus 75.3 44 0.00096 27.4 11.0 128 15-153 62-217 (366)
392 PF03193 DUF258: Protein of un 75.1 7.6 0.00016 27.9 4.6 33 115-147 3-35 (161)
393 PRK10867 signal recognition pa 72.7 27 0.00058 29.4 7.9 86 33-132 184-275 (433)
394 cd02032 Bchl_like This family 71.8 17 0.00037 28.0 6.3 69 32-102 115-184 (267)
395 cd03115 SRP The signal recogni 71.2 34 0.00074 24.3 7.7 82 33-128 83-170 (173)
396 PF00448 SRP54: SRP54-type pro 70.2 26 0.00057 25.8 6.7 88 33-134 84-177 (196)
397 KOG0781|consensus 70.0 32 0.0007 29.4 7.6 106 33-145 467-585 (587)
398 PF01656 CbiA: CobQ/CobB/MinD/ 69.8 17 0.00037 26.1 5.7 68 33-104 95-162 (195)
399 CHL00072 chlL photochlorophyll 69.6 53 0.0012 25.9 11.2 118 32-152 115-246 (290)
400 PF07015 VirC1: VirC1 protein; 68.7 36 0.00078 26.0 7.2 102 33-143 84-187 (231)
401 cd02037 MRP-like MRP (Multiple 68.3 39 0.00086 23.9 8.6 91 32-128 67-162 (169)
402 TIGR01968 minD_bact septum sit 68.1 41 0.00089 25.4 7.8 64 33-102 112-175 (261)
403 cd02042 ParA ParA and ParB of 66.1 32 0.00069 22.0 6.3 45 33-80 40-84 (104)
404 TIGR01425 SRP54_euk signal rec 65.3 30 0.00065 29.1 6.7 86 32-131 182-273 (429)
405 cd02040 NifH NifH gene encodes 64.7 61 0.0013 24.7 9.2 67 32-99 116-184 (270)
406 cd03114 ArgK-like The function 64.4 25 0.00054 24.6 5.4 58 32-101 91-148 (148)
407 KOG2485|consensus 62.2 36 0.00078 27.3 6.3 92 50-152 40-133 (335)
408 COG0523 Putative GTPases (G3E 61.0 45 0.00098 26.9 6.8 97 34-142 86-193 (323)
409 CHL00175 minD septum-site dete 60.4 62 0.0013 25.1 7.5 65 32-102 126-190 (281)
410 TIGR01281 DPOR_bchL light-inde 60.0 45 0.00098 25.6 6.6 69 32-102 115-184 (268)
411 COG0012 Predicted GTPase, prob 59.9 29 0.00064 28.4 5.6 40 90-133 206-247 (372)
412 PF09547 Spore_IV_A: Stage IV 58.4 95 0.0021 26.3 8.3 68 57-133 146-218 (492)
413 PRK12727 flagellar biosynthesi 57.9 1E+02 0.0022 27.0 8.6 87 32-134 428-521 (559)
414 TIGR01007 eps_fam capsular exo 56.8 52 0.0011 24.1 6.3 68 32-104 127-194 (204)
415 COG2179 Predicted hydrolase of 56.2 75 0.0016 23.1 7.5 45 69-129 45-89 (175)
416 PRK10818 cell division inhibit 54.3 97 0.0021 23.7 8.5 68 32-102 113-185 (270)
417 cd04170 EF-G_bact Elongation f 52.6 16 0.00035 28.2 3.0 24 125-148 241-264 (268)
418 cd00477 FTHFS Formyltetrahydro 52.2 91 0.002 26.9 7.4 69 72-149 342-412 (524)
419 PRK13507 formate--tetrahydrofo 51.3 99 0.0022 27.0 7.5 69 72-149 387-457 (587)
420 PF08438 MMR_HSR1_C: GTPase of 48.8 19 0.00041 24.0 2.5 31 96-133 1-32 (109)
421 PRK06731 flhF flagellar biosyn 48.2 1.3E+02 0.0029 23.5 7.9 88 32-133 154-247 (270)
422 TIGR01969 minD_arch cell divis 48.0 62 0.0013 24.3 5.6 65 32-102 108-172 (251)
423 TIGR02016 BchX chlorophyllide 47.0 1.4E+02 0.0031 23.5 8.2 111 32-154 122-253 (296)
424 PRK12726 flagellar biosynthesi 46.5 1.2E+02 0.0027 25.3 7.2 88 33-134 286-379 (407)
425 cd08166 MPP_Cdc1_like_1 unchar 45.8 1.1E+02 0.0023 22.8 6.3 66 56-123 42-111 (195)
426 TIGR01287 nifH nitrogenase iro 45.8 1.4E+02 0.003 23.0 9.0 67 32-99 115-183 (275)
427 KOG2961|consensus 43.1 1.2E+02 0.0027 21.7 7.3 53 91-147 80-132 (190)
428 COG3523 IcmF Type VI protein s 43.0 45 0.00097 31.9 4.7 50 54-104 212-270 (1188)
429 cd02067 B12-binding B12 bindin 42.9 59 0.0013 21.5 4.3 40 56-99 50-89 (119)
430 PRK14721 flhF flagellar biosyn 41.8 1.5E+02 0.0033 24.9 7.3 103 33-152 270-380 (420)
431 COG2759 MIS1 Formyltetrahydrof 41.6 1.9E+02 0.0041 24.8 7.6 72 71-151 354-427 (554)
432 PRK11889 flhF flagellar biosyn 41.0 2.2E+02 0.0048 24.0 7.9 87 33-133 321-413 (436)
433 PRK05703 flhF flagellar biosyn 41.0 1.6E+02 0.0034 24.8 7.2 93 33-142 300-401 (424)
434 KOG2052|consensus 40.9 59 0.0013 27.6 4.6 51 34-84 212-262 (513)
435 PF01268 FTHFS: Formate--tetra 40.4 36 0.00078 29.5 3.4 70 72-150 357-428 (557)
436 PF10087 DUF2325: Uncharacteri 40.3 98 0.0021 19.7 5.7 40 49-95 41-80 (97)
437 KOG1432|consensus 40.1 1.6E+02 0.0034 24.2 6.7 73 54-132 98-171 (379)
438 PRK14725 pyruvate kinase; Prov 39.5 1.7E+02 0.0037 25.9 7.3 81 69-153 514-594 (608)
439 PF00205 TPP_enzyme_M: Thiamin 39.5 24 0.00052 24.0 2.0 37 89-132 11-47 (137)
440 COG0552 FtsY Signal recognitio 38.3 2.2E+02 0.0048 23.2 8.1 94 31-141 220-326 (340)
441 TIGR00640 acid_CoA_mut_C methy 38.1 1.3E+02 0.0029 20.6 9.1 97 35-151 31-129 (132)
442 PRK14722 flhF flagellar biosyn 37.9 2.3E+02 0.005 23.4 8.4 95 32-134 215-318 (374)
443 COG1419 FlhF Flagellar GTP-bin 37.7 1.7E+02 0.0037 24.5 6.8 87 32-132 281-373 (407)
444 PF14784 ECIST_Cterm: C-termin 37.4 68 0.0015 22.0 3.8 41 55-95 82-123 (126)
445 PF13651 EcoRI_methylase: Aden 37.3 64 0.0014 26.0 4.2 59 45-122 123-182 (336)
446 COG1908 FrhD Coenzyme F420-red 37.1 76 0.0016 21.7 3.9 62 92-153 56-125 (132)
447 PRK04004 translation initiatio 37.0 40 0.00087 29.6 3.3 25 124-148 192-216 (586)
448 PRK13506 formate--tetrahydrofo 36.4 2.4E+02 0.0052 24.8 7.6 69 72-149 379-450 (578)
449 KOG0052|consensus 35.9 1.5E+02 0.0033 24.6 6.1 74 29-104 78-156 (391)
450 PRK12724 flagellar biosynthesi 35.8 1.5E+02 0.0033 25.0 6.3 89 32-135 299-397 (432)
451 PF02492 cobW: CobW/HypB/UreG, 35.4 59 0.0013 23.3 3.6 66 33-104 85-155 (178)
452 PF12098 DUF3574: Protein of u 35.2 65 0.0014 21.3 3.3 49 35-84 38-86 (104)
453 cd08047 TAF7 TATA Binding Prot 35.0 75 0.0016 22.7 4.0 55 14-69 32-90 (162)
454 cd01886 EF-G Elongation factor 34.8 38 0.00082 26.4 2.6 25 125-149 243-267 (270)
455 PLN02759 Formate--tetrahydrofo 34.4 2.3E+02 0.0049 25.2 7.2 69 72-149 436-507 (637)
456 TIGR03815 CpaE_hom_Actino heli 33.7 1.4E+02 0.0031 23.6 5.8 51 32-85 204-254 (322)
457 PF12327 FtsZ_C: FtsZ family, 33.6 1.3E+02 0.0029 19.3 4.9 51 49-101 28-78 (95)
458 cd01983 Fer4_NifH The Fer4_Nif 33.5 1.1E+02 0.0024 18.4 6.5 64 34-98 35-99 (99)
459 COG4359 Uncharacterized conser 33.3 84 0.0018 23.3 3.9 36 112-147 77-112 (220)
460 cd04169 RF3 RF3 subfamily. Pe 33.3 38 0.00082 26.3 2.4 25 125-149 240-264 (267)
461 PTZ00222 60S ribosomal protein 32.0 1.6E+02 0.0035 23.0 5.4 87 56-164 148-234 (263)
462 PF07034 ORC3_N: Origin recogn 30.7 67 0.0015 25.8 3.5 86 68-157 54-151 (330)
463 TIGR00315 cdhB CO dehydrogenas 30.6 1.1E+02 0.0024 22.0 4.2 35 90-131 28-62 (162)
464 PF07905 PucR: Purine cataboli 30.4 1.7E+02 0.0037 19.6 10.1 95 34-149 27-122 (123)
465 PRK14723 flhF flagellar biosyn 29.8 4.3E+02 0.0092 24.3 8.4 105 33-151 264-376 (767)
466 PTZ00386 formyl tetrahydrofola 28.6 3.8E+02 0.0082 23.8 7.6 69 72-149 423-495 (625)
467 KOG4271|consensus 28.6 69 0.0015 29.7 3.4 32 124-155 3-34 (1100)
468 PRK11537 putative GTP-binding 27.6 3.2E+02 0.007 21.9 8.4 95 33-142 91-196 (318)
469 cd02033 BchX Chlorophyllide re 27.4 3.4E+02 0.0073 22.0 11.8 86 57-154 173-277 (329)
470 PRK13869 plasmid-partitioning 27.4 3E+02 0.0066 22.9 6.8 68 32-102 251-326 (405)
471 cd02035 ArsA ArsA ATPase funct 27.3 1.8E+02 0.0039 21.6 5.1 67 33-103 114-183 (217)
472 PF08468 MTS_N: Methyltransfer 27.2 1.6E+02 0.0034 20.9 4.5 43 55-102 68-110 (155)
473 COG0541 Ffh Signal recognition 26.6 1.8E+02 0.0038 24.7 5.2 38 33-70 183-226 (451)
474 TIGR00503 prfC peptide chain r 26.3 62 0.0013 28.0 2.7 26 125-150 250-275 (527)
475 PF12989 DUF3873: Domain of un 26.1 1.6E+02 0.0035 17.8 4.2 42 35-76 9-51 (69)
476 COG2452 Predicted site-specifi 26.0 2.8E+02 0.006 20.6 7.2 69 76-151 100-168 (193)
477 cd02011 TPP_PK Thiamine pyroph 26.0 3E+02 0.0065 21.0 10.0 99 54-153 76-177 (227)
478 PRK08187 pyruvate kinase; Vali 25.2 2.5E+02 0.0054 24.2 6.0 78 72-153 400-477 (493)
479 cd02071 MM_CoA_mut_B12_BD meth 25.2 2.1E+02 0.0046 19.0 4.7 40 56-98 50-89 (122)
480 PRK13230 nitrogenase reductase 25.0 3.2E+02 0.007 21.0 9.7 53 32-85 116-169 (279)
481 PRK13660 hypothetical protein; 24.7 1.7E+02 0.0036 21.5 4.3 16 52-67 125-140 (182)
482 PF10036 RLL: Putative carniti 24.7 1.3E+02 0.0028 23.2 4.0 71 65-152 18-90 (249)
483 PRK13705 plasmid-partitioning 24.3 3.6E+02 0.0079 22.3 6.7 68 32-102 234-306 (388)
484 PF07764 Omega_Repress: Omega 23.7 83 0.0018 18.5 2.1 23 131-153 44-66 (71)
485 COG4502 5'(3')-deoxyribonucleo 23.7 1.3E+02 0.0029 21.2 3.4 43 56-100 83-125 (180)
486 cd01822 Lysophospholipase_L1_l 23.6 2.6E+02 0.0056 19.4 6.0 69 56-128 64-139 (177)
487 PF09827 CRISPR_Cas2: CRISPR a 23.3 91 0.002 18.9 2.4 25 59-83 3-27 (78)
488 PRK13235 nifH nitrogenase redu 22.8 3.6E+02 0.0077 20.7 9.5 68 32-100 117-186 (274)
489 PF00072 Response_reg: Respons 22.6 2.1E+02 0.0045 17.9 4.9 39 57-101 44-82 (112)
490 PRK13233 nifH nitrogenase redu 21.9 3.7E+02 0.0081 20.6 8.4 117 32-151 118-249 (275)
491 COG0420 SbcD DNA repair exonuc 21.6 1.7E+02 0.0037 24.0 4.3 45 56-102 40-87 (390)
492 PRK00945 acetyl-CoA decarbonyl 21.5 2E+02 0.0044 20.8 4.2 36 90-131 35-70 (171)
493 PF03709 OKR_DC_1_N: Orn/Lys/A 21.5 2.5E+02 0.0055 18.5 5.7 42 56-100 36-77 (115)
494 PRK05368 homoserine O-succinyl 21.2 1.8E+02 0.0039 23.2 4.2 47 32-78 64-121 (302)
495 TIGR02370 pyl_corrinoid methyl 21.1 2E+02 0.0044 21.1 4.3 60 58-132 135-194 (197)
496 TIGR03029 EpsG chain length de 20.7 3.9E+02 0.0086 20.4 6.2 50 33-84 213-262 (274)
497 PRK13556 azoreductase; Provisi 20.4 1.8E+02 0.0039 21.4 3.9 34 52-85 85-118 (208)
498 COG1010 CobJ Precorrin-3B meth 20.3 3.8E+02 0.0082 20.8 5.5 49 51-100 149-197 (249)
499 PF13676 TIR_2: TIR domain; PD 20.3 83 0.0018 19.9 1.9 29 39-67 32-60 (102)
500 PRK04452 acetyl-CoA decarbonyl 20.0 3.8E+02 0.0083 21.6 5.8 68 29-99 46-133 (319)
No 1
>KOG0084|consensus
Probab=100.00 E-value=4.7e-40 Score=234.43 Aligned_cols=176 Identities=39% Similarity=0.585 Sum_probs=154.6
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+.|| .+.|..|||+||..+++.+ +|+.++|++|||+||++|+.+...||++++++|+|||+++.+||+.+.
T Consensus 23 tCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~-~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~ 101 (205)
T KOG0084|consen 23 TCLLLRFKDDTFTESYISTIGVDFKIRTVEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVK 101 (205)
T ss_pred hhhhhhhccCCcchhhcceeeeEEEEEEeee-cceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHH
Confidence 5899999 8899999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCc-EEEecCCCCcCHHHHHHHHHHHHHHHhcC
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL-HFETSSRSGFQVENAFTAVTQEIYNRVQS 155 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~ 155 (193)
.|+.++..+.. .+.|.++||||+|+.+ .+.++.++++.|+..++++ ++++||+++.||+++|..|...+..++..
T Consensus 102 ~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~---~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~ 177 (205)
T KOG0084|consen 102 RWIQEIDRYAS-ENVPKLLVGNKCDLTE---KRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRKGL 177 (205)
T ss_pred HHHHHhhhhcc-CCCCeEEEeeccccHh---heecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHhccc
Confidence 99999999864 4567779999999988 6999999999999999998 99999999999999999999999988766
Q ss_pred CCccccCCccccccCCCCCcCccCchhhhcCCCCCCCC
Q psy38 156 GDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEPAKSSCC 193 (193)
Q Consensus 156 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~cc 193 (193)
...... +.+++..... +|..+..++||
T Consensus 178 ~~~~~~----------~~~~~~ql~~-~p~~~~~~~~C 204 (205)
T KOG0084|consen 178 HVKWST----------ASLESVQLKG-TPVKKSNGGCC 204 (205)
T ss_pred CCCCCc----------CCCCceeeCC-CCcccccCCCC
Confidence 643332 2333333333 36666777788
No 2
>KOG0092|consensus
Probab=100.00 E-value=8.2e-38 Score=222.18 Aligned_cols=152 Identities=39% Similarity=0.654 Sum_probs=140.1
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
.||+.|| .+...||||..|.++.+.+ ++..++|.+|||+|+++|.++.++||++++++|+|||+++.+||..+.
T Consensus 19 SSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~-~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK 97 (200)
T KOG0092|consen 19 SSLVLRFVKDQFHENIEPTIGAAFLTKTVTV-DDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAK 97 (200)
T ss_pred hhhhhhhhhCccccccccccccEEEEEEEEe-CCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHH
Confidence 3788888 4445999999999999999 888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG 156 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~ 156 (193)
.|+.++..... ++..|.|||||+||.+ .+.+..+++..+|.+.+..|+|+||++|.||+++|..|.+.+.......
T Consensus 98 ~WvkeL~~~~~-~~~vialvGNK~DL~~---~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~~ 173 (200)
T KOG0092|consen 98 NWVKELQRQAS-PNIVIALVGNKADLLE---RREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQE 173 (200)
T ss_pred HHHHHHHhhCC-CCeEEEEecchhhhhh---cccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCccccc
Confidence 99999999875 6788889999999988 6899999999999999999999999999999999999999988876665
Q ss_pred Cc
Q psy38 157 DY 158 (193)
Q Consensus 157 ~~ 158 (193)
..
T Consensus 174 ~~ 175 (200)
T KOG0092|consen 174 RQ 175 (200)
T ss_pred cc
Confidence 43
No 3
>KOG0094|consensus
Probab=100.00 E-value=4.6e-38 Score=223.68 Aligned_cols=147 Identities=35% Similarity=0.587 Sum_probs=139.0
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+|||+|| +..|.+|||+||..+++.+ .+++++|++|||+||++|+.+.+.|++++.++|+|||+++..||++..
T Consensus 36 TslItRf~yd~fd~~YqATIGiDFlskt~~l-~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~ 114 (221)
T KOG0094|consen 36 TSLITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTS 114 (221)
T ss_pred HHHHHHHHHhhhcccccceeeeEEEEEEEEE-cCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHH
Confidence 5899998 8899999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
+|++++..........|+|||||.||.+ .++++.+++...|+++++.|.++||+.|.||.++|..|...+...
T Consensus 115 kWi~dv~~e~gs~~viI~LVGnKtDL~d---krqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 115 KWIEDVRRERGSDDVIIFLVGNKTDLSD---KRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred HHHHHHHhccCCCceEEEEEcccccccc---hhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCc
Confidence 9999999998877788899999999988 699999999999999999999999999999999999977766544
No 4
>KOG0091|consensus
Probab=100.00 E-value=1.7e-38 Score=219.73 Aligned_cols=185 Identities=52% Similarity=0.881 Sum_probs=164.2
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
|||++| .+-.+||+|+||+.+.+.+..|..+.+++|||+|+++|++..+.||+++-+++++||.+|++||+++..
T Consensus 23 sll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~ 102 (213)
T KOG0091|consen 23 SLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVEN 102 (213)
T ss_pred HHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHH
Confidence 566666 666799999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC-CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38 78 WMMEAKRHIE-PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG 156 (193)
Q Consensus 78 ~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~ 156 (193)
|+++...+.. +..+.++|||+|.||.. .++|+.+++..+++.+|+.|+|+||++|.||++.|..+.+.+...+.++
T Consensus 103 w~~ea~m~~q~P~k~VFlLVGhKsDL~S---qRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~~i~qG 179 (213)
T KOG0091|consen 103 WVKEAAMATQGPDKVVFLLVGHKSDLQS---QRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQAIQQG 179 (213)
T ss_pred HHHHHHHhcCCCCeeEEEEeccccchhh---hccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHHHHhcC
Confidence 9999998887 66778889999999987 7999999999999999999999999999999999999999999999999
Q ss_pred CccccCCccccccCCCCCcCccCchhhhcCCCCCCCC
Q psy38 157 DYKVEDGWEGIKTGFSRTNAVLDDDLMLAEPAKSSCC 193 (193)
Q Consensus 157 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~cc 193 (193)
+...+..+-++|+..... .--... ...|.|.-||
T Consensus 180 eik~edgw~gvKSsrpn~--i~~s~~-~~~P~k~c~C 213 (213)
T KOG0091|consen 180 EIKLEDGWGGVKSSRPNQ--IPRSPS-RKQPSKPCQC 213 (213)
T ss_pred ceeeeeccccccccCCCc--CCCccc-ccCCCCCCCC
Confidence 999999999999944222 111111 3345666667
No 5
>KOG0098|consensus
Probab=100.00 E-value=1.3e-37 Score=219.76 Aligned_cols=159 Identities=47% Similarity=0.794 Sum_probs=148.3
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
|||.|| .+.+..|+|++|..+.+.+ ++++++|++|||+|++.|++..+.||+++.++|+|||++.++||+.+..
T Consensus 21 clllrf~~krF~~~hd~TiGvefg~r~~~i-d~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~ 99 (216)
T KOG0098|consen 21 CLLLRFTDKRFQPVHDLTIGVEFGARMVTI-DGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTS 99 (216)
T ss_pred HHHHHHhccCccccccceeeeeeceeEEEE-cCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHH
Confidence 566666 7788899999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCCC
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGD 157 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~~ 157 (193)
|+.++.++. ..+..|+|+|||+||.. .+.|+.+++..||+++++.++++||+++.||+|+|..+...|++..+.+-
T Consensus 100 wL~D~rq~~-~~NmvImLiGNKsDL~~---rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~~~q~g~ 175 (216)
T KOG0098|consen 100 WLEDARQHS-NENMVIMLIGNKSDLEA---RREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYRKIQDGV 175 (216)
T ss_pred HHHHHHHhc-CCCcEEEEEcchhhhhc---cccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 999999986 45678889999999988 68999999999999999999999999999999999999999999999988
Q ss_pred ccccCCccc
Q psy38 158 YKVEDGWEG 166 (193)
Q Consensus 158 ~~~~~~~~~ 166 (193)
......+++
T Consensus 176 ~~~~~~~k~ 184 (216)
T KOG0098|consen 176 FDDINESKG 184 (216)
T ss_pred ccccccccc
Confidence 777766665
No 6
>KOG0078|consensus
Probab=100.00 E-value=2e-36 Score=218.73 Aligned_cols=154 Identities=41% Similarity=0.715 Sum_probs=143.8
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+|||.|| ...|..|+|+||..+++.+ +|+.+.+++|||+||++|+.+...||++++++++|||+++..||+++.
T Consensus 26 t~~l~rf~d~~f~~~~~sTiGIDFk~kti~l-~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~ 104 (207)
T KOG0078|consen 26 TCLLLRFSDDSFNTSFISTIGIDFKIKTIEL-DGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIR 104 (207)
T ss_pred hHhhhhhhhccCcCCccceEEEEEEEEEEEe-CCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHH
Confidence 4788888 7889999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG 156 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~ 156 (193)
.|+..|.++. +..+|++|||||+|+.. .+.|+.+.+..+|.++|+.++|+||++|.||++.|..+++.++.+....
T Consensus 105 ~W~~~I~e~a-~~~v~~~LvGNK~D~~~---~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~~ 180 (207)
T KOG0078|consen 105 NWIKNIDEHA-SDDVVKILVGNKCDLEE---KRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQKLEDA 180 (207)
T ss_pred HHHHHHHhhC-CCCCcEEEeeccccccc---cccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHhhcchh
Confidence 9999999986 55789999999999988 6999999999999999999999999999999999999999999977666
Q ss_pred Cccc
Q psy38 157 DYKV 160 (193)
Q Consensus 157 ~~~~ 160 (193)
+.+.
T Consensus 181 ~~~~ 184 (207)
T KOG0078|consen 181 ELEA 184 (207)
T ss_pred hhcc
Confidence 4433
No 7
>KOG0086|consensus
Probab=100.00 E-value=5e-36 Score=205.49 Aligned_cols=185 Identities=41% Similarity=0.643 Sum_probs=169.0
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
|||+|| .+....|+|++|..+++.+ +|+.+.+++|||+|+++|++..+.||+++-++++|||+++++||+.+..
T Consensus 24 CLLh~Fie~kfkDdssHTiGveFgSrIinV-GgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtn 102 (214)
T KOG0086|consen 24 CLLHQFIENKFKDDSSHTIGVEFGSRIVNV-GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTN 102 (214)
T ss_pred HHHHHHHHhhhcccccceeeeeecceeeee-cCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHH
Confidence 788888 7788999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCCC
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGD 157 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~~ 157 (193)
|+.++.... +.++-++++|||.||.. .++++..++-.|+++..+.++|+||.+|+||+|.|-..++.|+.+.+.++
T Consensus 103 WL~DaR~lA-s~nIvviL~GnKkDL~~---~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~kIE~GE 178 (214)
T KOG0086|consen 103 WLTDARTLA-SPNIVVILCGNKKDLDP---EREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIESGE 178 (214)
T ss_pred HHHHHHhhC-CCcEEEEEeCChhhcCh---hhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHHHHHHHhhcC
Confidence 999999875 66788889999999988 59999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccccccCCCCCcCccCchh-hhcCCCCCCC
Q psy38 158 YKVEDGWEGIKTGFSRTNAVLDDDL-MLAEPAKSSC 192 (193)
Q Consensus 158 ~~~~~~~~~~k~~~~~~~~~~~~~~-~~~~~~~~~c 192 (193)
..+++..+++-.++..-+.+..+.+ +...++..+|
T Consensus 179 lDPer~gsGIQYGdaslR~l~~p~s~r~~n~~~c~C 214 (214)
T KOG0086|consen 179 LDPERMGSGIQYGDASLRQLRQPRSARAVNPQPCGC 214 (214)
T ss_pred CCHHHcccccccchhhhhccCCcchhccCCCCCCCC
Confidence 9999999999999988877777664 2333444444
No 8
>KOG0079|consensus
Probab=100.00 E-value=3.6e-35 Score=200.14 Aligned_cols=145 Identities=41% Similarity=0.652 Sum_probs=137.1
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+.|| ...|..|+|+||..+++++ +|..+.++||||+|+++|+.+...||++.+++|+|||+++.+||.++.+
T Consensus 23 sLl~rF~ddtFs~sYitTiGvDfkirTv~i-~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~r 101 (198)
T KOG0079|consen 23 SLLLRFADDTFSGSYITTIGVDFKIRTVDI-NGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKR 101 (198)
T ss_pred HHHHHHhhcccccceEEEeeeeEEEEEeec-CCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHH
Confidence 567777 7789999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
|++++.+.+. ..|-++||||.|+.+ .+.+..++++.||..+|+.+||+||+.+.|++..|.-|.++.+...
T Consensus 102 WLeei~~ncd--sv~~vLVGNK~d~~~---RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 102 WLEEIRNNCD--SVPKVLVGNKNDDPE---RRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred HHHHHHhcCc--cccceecccCCCCcc---ceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHHH
Confidence 9999999875 577789999999988 6889999999999999999999999999999999999999999877
No 9
>KOG0087|consensus
Probab=100.00 E-value=2.3e-34 Score=207.34 Aligned_cols=152 Identities=45% Similarity=0.710 Sum_probs=140.7
Q ss_pred eeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38 4 LLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW 78 (193)
Q Consensus 4 ll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 78 (193)
||-|| ..+..+|||++|.++.+.+ +|+.+..+||||+||++|+.....||+++.++++|||++...+|+.+.+|
T Consensus 30 LlsRftrnEF~~~SksTIGvef~t~t~~v-d~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rW 108 (222)
T KOG0087|consen 30 LLSRFTRNEFSLESKSTIGVEFATRTVNV-DGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERW 108 (222)
T ss_pred HHHHhcccccCcccccceeEEEEeeceee-cCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHH
Confidence 45566 6688899999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCCCc
Q psy38 79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGDY 158 (193)
Q Consensus 79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~~~ 158 (193)
+.+++.+. ..+++|+|||||+||.. .+.|+.++++.+|...+..++++||.++.||+++|..++..|+...-++..
T Consensus 109 L~ELRdha-d~nivimLvGNK~DL~~---lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~k~~ 184 (222)
T KOG0087|consen 109 LKELRDHA-DSNIVIMLVGNKSDLNH---LRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYKIVSKKQL 184 (222)
T ss_pred HHHHHhcC-CCCeEEEEeecchhhhh---ccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHHHHHHHhh
Confidence 99999986 55799999999999988 688999999999999999999999999999999999999999998766544
Q ss_pred cc
Q psy38 159 KV 160 (193)
Q Consensus 159 ~~ 160 (193)
..
T Consensus 185 ~~ 186 (222)
T KOG0087|consen 185 DE 186 (222)
T ss_pred hc
Confidence 43
No 10
>KOG0394|consensus
Probab=100.00 E-value=7.9e-35 Score=205.29 Aligned_cols=152 Identities=33% Similarity=0.579 Sum_probs=139.9
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+||| ...|..|||.||.++.+.+ +++.+.+++|||+|+++|+++.-.+|+++|+++++||++++.||+.+.
T Consensus 23 tSLmn~yv~~kF~~qykaTIgadFltKev~V-d~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~ 101 (210)
T KOG0394|consen 23 TSLMNQYVNKKFSQQYKATIGADFLTKEVQV-DDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLE 101 (210)
T ss_pred HHHHHHHHHHHHHHHhccccchhheeeEEEE-cCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHH
Confidence 5788888 8899999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC---CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIE---PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 77 ~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
.|.+++..+.. +...|+||+|||+|+.+. ..+.++...++++|+..| ++|||+||+.+.||++.|..+++.++..
T Consensus 102 ~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~-~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~ 180 (210)
T KOG0394|consen 102 NWRKEFLIQASPQDPETFPFVILGNKIDVDGG-KSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALAN 180 (210)
T ss_pred HHHHHHHHhcCCCCCCcccEEEEcccccCCCC-ccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhc
Confidence 99999998876 457899999999999652 138899999999998865 7999999999999999999999999987
Q ss_pred hcC
Q psy38 153 VQS 155 (193)
Q Consensus 153 ~~~ 155 (193)
...
T Consensus 181 E~~ 183 (210)
T KOG0394|consen 181 EDR 183 (210)
T ss_pred cch
Confidence 643
No 11
>KOG0080|consensus
Probab=100.00 E-value=2.1e-34 Score=198.88 Aligned_cols=147 Identities=37% Similarity=0.632 Sum_probs=136.8
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
|||.|| ++....|||+||..+.+.+ +|+.+.+-+|||+|+++|+.+.+.||+++.++|+|||++.+++|..+..
T Consensus 26 SLllrFv~~~fd~~~~~tIGvDFkvk~m~v-dg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~ 104 (209)
T KOG0080|consen 26 SLLLRFVSNTFDDLHPTTIGVDFKVKVMQV-DGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDI 104 (209)
T ss_pred HHHHHHHhcccCccCCceeeeeEEEEEEEE-cCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHH
Confidence 567777 5556666999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
|++++..+...++...++||||+|.++ .+.|+.+++..||+++++.++||||++.+||...|+.++..|++-.
T Consensus 105 W~~Eld~Ystn~diikmlVgNKiDkes---~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 105 WLKELDLYSTNPDIIKMLVGNKIDKES---ERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIETP 177 (209)
T ss_pred HHHHHHhhcCCccHhHhhhcccccchh---cccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcCc
Confidence 999999999877888889999999876 5899999999999999999999999999999999999999998743
No 12
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=2.5e-33 Score=208.47 Aligned_cols=183 Identities=32% Similarity=0.563 Sum_probs=147.6
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||++|| .++|.||+|.++..+.+.+ +|..+.+++|||+|+++|+.++..|++++|++|+|||+++++||+++.
T Consensus 14 TSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~ 92 (202)
T cd04120 14 TSLMRRFTDDTFCEACKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLP 92 (202)
T ss_pred HHHHHHHHhCCCCCcCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHH
Confidence 4677777 5678999999999999999 889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC-CCcEEEecCCCCcCHHHHHHHHHHHHHHHhcC
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-DILHFETSSRSGFQVENAFTAVTQEIYNRVQS 155 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~ 155 (193)
.|+..+.... ....|+++||||+||.. .+.+..+++.+++++. ++.|++|||++|.||+++|.++++.+......
T Consensus 93 ~w~~~i~~~~-~~~~piilVgNK~DL~~---~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~~~~ 168 (202)
T cd04120 93 KWMKMIDKYA-SEDAELLLVGNKLDCET---DREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPL 168 (202)
T ss_pred HHHHHHHHhC-CCCCcEEEEEECccccc---ccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhCcc
Confidence 9999887653 45689999999999976 4778899999999885 78999999999999999999999988775332
Q ss_pred CCccccCCccccccCCCCCcCccCchhhhcCCCCCCCC
Q psy38 156 GDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEPAKSSCC 193 (193)
Q Consensus 156 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~cc 193 (193)
+....+-..++-+-+..|..+-.--+ +.---.||
T Consensus 169 -~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 202 (202)
T cd04120 169 -DILRNELSNSILSLQPEPEIPPELPP---PRPHVRCC 202 (202)
T ss_pred -ccccccccchhhccCCCCCCCcCCCC---CCCCcccC
Confidence 34444444444444455544332222 23345677
No 13
>KOG0097|consensus
Probab=100.00 E-value=8.1e-34 Score=192.54 Aligned_cols=184 Identities=39% Similarity=0.724 Sum_probs=165.2
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
|||++| ..+...|+|++|.++++.+ .|.++.+++|||+|+++|+...+.||+++.+.++|||++.+.+++.+..
T Consensus 26 cllhqftekkfmadcphtigvefgtriiev-sgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlss 104 (215)
T KOG0097|consen 26 CLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS 104 (215)
T ss_pred HHHHHHHHHHHhhcCCcccceecceeEEEe-cCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHH
Confidence 788888 6788999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCCC
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGD 157 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~~ 157 (193)
|+.+.....++ +..|+++|||.||+. .+.++.+++++|+.+.|+-++++||++|.||++.|....++|+++.+++.
T Consensus 105 wl~dar~ltnp-nt~i~lignkadle~---qrdv~yeeak~faeengl~fle~saktg~nvedafle~akkiyqniqdgs 180 (215)
T KOG0097|consen 105 WLTDARNLTNP-NTVIFLIGNKADLES---QRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAKKIYQNIQDGS 180 (215)
T ss_pred HHhhhhccCCC-ceEEEEecchhhhhh---cccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHHHHHHhhhcCc
Confidence 99999887654 566679999999988 69999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccccccCCCCCcCccCchhhhcCCCCCCC-C
Q psy38 158 YKVEDGWEGIKTGFSRTNAVLDDDLMLAEPAKSSC-C 193 (193)
Q Consensus 158 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~c-c 193 (193)
.......+++..+...|...+..+ -..+++.+| |
T Consensus 181 ldlnaaesgvq~k~~~p~~~~l~s--e~~~~kd~c~c 215 (215)
T KOG0097|consen 181 LDLNAAESGVQHKPSQPSRTSLSS--EATGAKDQCSC 215 (215)
T ss_pred ccccchhccCcCCCCCCCcccccc--CCCCccccCCC
Confidence 999999999888887775544333 123456667 5
No 14
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=4.6e-33 Score=205.18 Aligned_cols=156 Identities=34% Similarity=0.536 Sum_probs=139.2
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+|||+|| .++|.||+|.++....+.+ ++..+.+++|||+|+++|..+++.+++++|++|+|||++++.||+.+.
T Consensus 20 Tsll~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~ 98 (189)
T cd04121 20 GEILASLQDGSTESPYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGID 98 (189)
T ss_pred HHHHHHHHcCCCCCCCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHH
Confidence 3677777 5677889999998888888 889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG 156 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~ 156 (193)
.|+.++.... ...|++|||||.||.. .+.++.+++..+++..+++|++|||++|.||+++|.++++.++....+.
T Consensus 99 ~w~~~i~~~~--~~~piilVGNK~DL~~---~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~~~~~~ 173 (189)
T cd04121 99 RWIKEIDEHA--PGVPKILVGNRLHLAF---KRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMRHGRP 173 (189)
T ss_pred HHHHHHHHhC--CCCCEEEEEECccchh---ccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 9999997764 4689999999999976 4678999999999999999999999999999999999999998877766
Q ss_pred CccccCC
Q psy38 157 DYKVEDG 163 (193)
Q Consensus 157 ~~~~~~~ 163 (193)
..++.++
T Consensus 174 ~~~~~~~ 180 (189)
T cd04121 174 PQSPPQN 180 (189)
T ss_pred CCCCCcc
Confidence 5555443
No 15
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.8e-32 Score=205.54 Aligned_cols=189 Identities=56% Similarity=0.938 Sum_probs=167.0
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+++| ...+.||+|.++..+.+.+.++..+.+++|||+|++.+..++..+++++|++|+|||+++++||+++.
T Consensus 16 TsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~ 95 (211)
T cd04111 16 SSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVH 95 (211)
T ss_pred HHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHH
Confidence 3567776 56688999999999888875678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG 156 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~ 156 (193)
.|+..+........+|+++||||.|+.. .+.+..+++..+++.++++++++||++|.||+++|++|++.+.+..+.+
T Consensus 96 ~~~~~i~~~~~~~~~~iilvgNK~Dl~~---~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~~~~ 172 (211)
T cd04111 96 DWLEEARSHIQPHRPVFILVGHKCDLES---QRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRG 172 (211)
T ss_pred HHHHHHHHhcCCCCCeEEEEEEcccccc---ccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcC
Confidence 9999998876566788999999999976 4678888899999999999999999999999999999999999999988
Q ss_pred CccccCCccccccCCCCCcCccC--chhhhcCCCCCCCC
Q psy38 157 DYKVEDGWEGIKTGFSRTNAVLD--DDLMLAEPAKSSCC 193 (193)
Q Consensus 157 ~~~~~~~~~~~k~~~~~~~~~~~--~~~~~~~~~~~~cc 193 (193)
+.+....+.+++.++.+.+.-+. +.+.-+.|+|+-||
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (211)
T cd04111 173 ELCALDGWDGVKSGFPAGRAFSLEERSPTFASPEKSCCC 211 (211)
T ss_pred CCCccccccccccCCCcccccccCcccccccCCCCCCCC
Confidence 88999999999999977765554 44566788898888
No 16
>KOG0093|consensus
Probab=100.00 E-value=1.8e-33 Score=191.64 Aligned_cols=150 Identities=35% Similarity=0.602 Sum_probs=139.2
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+|++-|| ...|..|+|++|..+++-- +.+.+.+++|||+|+++|+.+...||++++++|+|||.+|.+||+.+.
T Consensus 35 TSfl~ry~ddSFt~afvsTvGidFKvKTvyr-~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svq 113 (193)
T KOG0093|consen 35 TSFLFRYADDSFTSAFVSTVGIDFKVKTVYR-SDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQ 113 (193)
T ss_pred hhhhHHhhccccccceeeeeeeeEEEeEeee-cccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHH
Confidence 4677777 6688999999999998877 778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG 156 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~ 156 (193)
.|.-.|..+. ..+.|+|+||||+||.+ .+.++.+.++.++..+|+.|||+||+.+.||.++|..++..|.+++-+.
T Consensus 114 dw~tqIktys-w~naqvilvgnKCDmd~---eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kmses 189 (193)
T KOG0093|consen 114 DWITQIKTYS-WDNAQVILVGNKCDMDS---ERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVDIICDKMSES 189 (193)
T ss_pred HHHHHheeee-ccCceEEEEecccCCcc---ceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHHHHHHHhhhh
Confidence 9999999884 67899999999999988 6999999999999999999999999999999999999999999876543
No 17
>KOG0088|consensus
Probab=100.00 E-value=1.9e-33 Score=193.86 Aligned_cols=183 Identities=31% Similarity=0.514 Sum_probs=150.8
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+-|| +....+|+-..|..+.+.+ ++....+++|||+|+++|..+.+.||++++++++|||++|++||+.+.
T Consensus 27 tSLVLRy~EnkFn~kHlsTlQASF~~kk~n~-ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVK 105 (218)
T KOG0088|consen 27 TSLVLRYVENKFNCKHLSTLQASFQNKKVNV-EDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVK 105 (218)
T ss_pred hHHHHHHHHhhcchhhHHHHHHHHhhccccc-ccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHH
Confidence 3566666 6667788877899999999 889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG 156 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~ 156 (193)
.|..++..... ..+-++|||||+||++ .+.|+.+++..++..-|..|+++||+++.||.|+|..+...+++...+.
T Consensus 106 nWV~Elr~mlG-nei~l~IVGNKiDLEe---eR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~s~~ 181 (218)
T KOG0088|consen 106 NWVLELRTMLG-NEIELLIVGNKIDLEE---ERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAKMIEHSSQR 181 (218)
T ss_pred HHHHHHHHHhC-CeeEEEEecCcccHHH---hhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHHHHHHhhhc
Confidence 99999998764 4577889999999988 6999999999999999999999999999999999999999999876554
Q ss_pred CccccCCccccccCCCC-CcCccCch-hhhcCCCCCCCC
Q psy38 157 DYKVEDGWEGIKTGFSR-TNAVLDDD-LMLAEPAKSSCC 193 (193)
Q Consensus 157 ~~~~~~~~~~~k~~~~~-~~~~~~~~-~~~~~~~~~~cc 193 (193)
+... +...+.... .++....+ -++..+++++||
T Consensus 182 qr~~----~~~s~qpp~t~r~~~~iD~e~~a~~sg~~CC 216 (218)
T KOG0088|consen 182 QRTR----SPLSTQPPSTNRSIRLIDNEAEAERSGKRCC 216 (218)
T ss_pred cccc----CCcCCCCCCcccchhccCCCcccccccCCcc
Confidence 3222 222222211 12333333 346777888899
No 18
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=7.4e-32 Score=203.94 Aligned_cols=186 Identities=19% Similarity=0.240 Sum_probs=146.1
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH-
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI- 75 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~- 75 (193)
+||++|| .++|.||++.++. ..+.+ ++..+.++||||+|++.|..+++.+|+++|++|+|||+++++||+.+
T Consensus 27 TsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~-~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~ 104 (232)
T cd04174 27 TAMLQVLAKDCYPETYVPTVFENYT-AGLET-EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSAL 104 (232)
T ss_pred HHHHHHHhcCCCCCCcCCceeeeeE-EEEEE-CCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHH
Confidence 3677776 6789999986664 56778 89999999999999999999999999999999999999999999985
Q ss_pred HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCc-CHHHHHHH
Q psy38 76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGF-QVENAFTA 144 (193)
Q Consensus 76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~-~i~e~f~~ 144 (193)
..|+..+.... +..|++|||||.||..+. ..+.++.+++.++|++.++ .|+||||++|. ||+++|..
T Consensus 105 ~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~ 182 (232)
T cd04174 105 KKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRS 182 (232)
T ss_pred HHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHH
Confidence 78999998764 357899999999996421 1256899999999999998 69999999998 89999999
Q ss_pred HHHHHHHHhcCCCccccCCccccccCCCCCcCccCchhhhcCCCCCCC
Q psy38 145 VTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEPAKSSC 192 (193)
Q Consensus 145 i~~~i~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~c 192 (193)
++..+++....... ....++..+.+...|+.........+..+.++|
T Consensus 183 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (232)
T cd04174 183 ASLLCLNKLSPPIK-KSPVRSLSKRLLHLPSRSELISSTFKKEKAKSC 229 (232)
T ss_pred HHHHHHHhcccccc-cccccccccccccCCCcccccccccccccCCcc
Confidence 99999876555322 222333344444445444444344556666677
No 19
>KOG0083|consensus
Probab=100.00 E-value=1.3e-32 Score=184.85 Aligned_cols=146 Identities=39% Similarity=0.667 Sum_probs=136.7
Q ss_pred eeeeeec------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH
Q psy38 2 VTLLYLY------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI 75 (193)
Q Consensus 2 ~sll~r~------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 75 (193)
+|||-|| ...+.+|+|+||..+.+++ +++++.+++|||+||++|++....||+++|+++++||+++..||+++
T Consensus 11 tcllir~kdgafl~~~fistvgid~rnkli~~-~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~ 89 (192)
T KOG0083|consen 11 TCLLIRFKDGAFLAGNFISTVGIDFRNKLIDM-DDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNC 89 (192)
T ss_pred eEEEEEeccCceecCceeeeeeeccccceecc-CCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHH
Confidence 6899999 7789999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
+.|+.+|.++... ...+.++|||+|+.. .+.+..+++..+++..++|++++||++|.||+-.|..|.+.+.+.
T Consensus 90 ~~wlsei~ey~k~-~v~l~llgnk~d~a~---er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k~ 162 (192)
T KOG0083|consen 90 QAWLSEIHEYAKE-AVALMLLGNKCDLAH---ERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKKL 162 (192)
T ss_pred HHHHHHHHHHHHh-hHhHhhhccccccch---hhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHHh
Confidence 9999999999754 466679999999965 488999999999999999999999999999999999999988764
No 20
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.5e-31 Score=199.28 Aligned_cols=178 Identities=28% Similarity=0.494 Sum_probs=144.4
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecC-CcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRD-GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI 75 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 75 (193)
+||++|| ...|.||+|.++....+.+ + +..+.+.+|||+|+++|..+++.++++++++|+|||++++++|+.+
T Consensus 14 Tsli~~l~~~~~~~~~~~t~~~d~~~~~v~~-~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~ 92 (201)
T cd04107 14 TSIIKRYVHGIFSQHYKATIGVDFALKVIEW-DPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAV 92 (201)
T ss_pred HHHHHHHHcCCCCCCCCCceeEEEEEEEEEE-CCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHH
Confidence 4677877 5678999999999888888 6 8899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC---CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 76 PVWMMEAKRHIE---PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 76 ~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
..|+..+..... ....|++|||||.|+.. .+.+..+++.++++..+ ..|+++||++|.||+++|.++++.++.
T Consensus 93 ~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 93 LKWKADLDSKVTLPNGEPIPCLLLANKCDLKK---RLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred HHHHHHHHHhhcccCCCCCcEEEEEECCCccc---ccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999998876432 35689999999999975 36678889999999988 599999999999999999999999987
Q ss_pred HhcCCCccccCCccccccCCCCCcCccCchhhhcCCCCCCCC
Q psy38 152 RVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEPAKSSCC 193 (193)
Q Consensus 152 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~cc 193 (193)
..+...+...... .+.....+ .+.+.++.+||
T Consensus 170 ~~~~~~~~~~~~~--------~~~~~~~~--~~~~~~~~~~~ 201 (201)
T cd04107 170 NDKNLQQAETPED--------GSVIDLKQ--TTTKKKSKGCC 201 (201)
T ss_pred hchhhHhhcCCCc--------cccccccc--ceeccccCCCC
Confidence 6544433222111 12222222 35566777999
No 21
>KOG0095|consensus
Probab=100.00 E-value=2.9e-32 Score=186.39 Aligned_cols=152 Identities=38% Similarity=0.654 Sum_probs=139.6
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+.|| .+....|||++|.-+++.+ +|.++.+++|||+|+++|++....||+.++++|++||++-.+||+-+.
T Consensus 21 tclvrrftqglfppgqgatigvdfmiktvev-~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclp 99 (213)
T KOG0095|consen 21 TCLVRRFTQGLFPPGQGATIGVDFMIKTVEV-NGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLP 99 (213)
T ss_pred chhhhhhhccCCCCCCCceeeeeEEEEEEEE-CCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhH
Confidence 6889998 7788889999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG 156 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~ 156 (193)
.|+.+|.++.......| +||||.|+.+ .++++...+.+|+......|+++||++..||+.+|..++-.+......+
T Consensus 100 ewlreie~yan~kvlki-lvgnk~d~~d---rrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rli~~ar~~ 175 (213)
T KOG0095|consen 100 EWLREIEQYANNKVLKI-LVGNKIDLAD---RREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRLISEARQN 175 (213)
T ss_pred HHHHHHHHHhhcceEEE-eeccccchhh---hhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHhc
Confidence 99999999986655555 9999999987 5899999999999999999999999999999999999998888766555
Q ss_pred Cc
Q psy38 157 DY 158 (193)
Q Consensus 157 ~~ 158 (193)
..
T Consensus 176 d~ 177 (213)
T KOG0095|consen 176 DL 177 (213)
T ss_pred cc
Confidence 44
No 22
>KOG0081|consensus
Probab=99.98 E-value=9.7e-32 Score=185.53 Aligned_cols=152 Identities=39% Similarity=0.633 Sum_probs=140.6
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEec--------CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMR--------DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS 68 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~--------~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 68 (193)
+|+|.|| ...+..|+|+||..+.+-+. .+..+++++|||+|+++|+++...|++++-+++++||+++
T Consensus 23 Ts~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~ 102 (219)
T KOG0081|consen 23 TSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTS 102 (219)
T ss_pred eEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccc
Confidence 6889998 77889999999999988762 1357999999999999999999999999999999999999
Q ss_pred hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 69 RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 69 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
..||-++++|+.++..+.--.++-|+++|||+||.+ .+.|+.+++.+++.+.++||||+||-+|.||++..+.++..
T Consensus 103 eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~---~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~Lldl 179 (219)
T KOG0081|consen 103 EQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED---QRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELLLDL 179 (219)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh---hhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHH
Confidence 999999999999999887667788999999999988 79999999999999999999999999999999999999999
Q ss_pred HHHHhcCC
Q psy38 149 IYNRVQSG 156 (193)
Q Consensus 149 i~~~~~~~ 156 (193)
+++++++.
T Consensus 180 vM~Rie~~ 187 (219)
T KOG0081|consen 180 VMKRIEQC 187 (219)
T ss_pred HHHHHHHH
Confidence 99988765
No 23
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=8.3e-31 Score=193.62 Aligned_cols=150 Identities=30% Similarity=0.472 Sum_probs=129.1
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+++| .+.|.||++..+ ...+.+ ++..+.+++|||+|+++|..++..+++++|++|+|||+++++||+.+.
T Consensus 13 Tsli~~l~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~ 90 (190)
T cd04144 13 TALTIQLCLNHFVETYDPTIEDSY-RKQVVV-DGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVE 90 (190)
T ss_pred HHHHHHHHhCCCCccCCCchHhhE-EEEEEE-CCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHH
Confidence 3677776 567899997444 455667 888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC--CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38 77 VWMMEAKRHIE--PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154 (193)
Q Consensus 77 ~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~ 154 (193)
.|+..+..... ....|+++||||+|+.. .+.+...++.+++...+++|+++||++|.|++++|.++++.+.....
T Consensus 91 ~~~~~i~~~~~~~~~~~piilvgNK~Dl~~---~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~ 167 (190)
T cd04144 91 RFREQIQRVKDESAADVPIMIVGNKCDKVY---EREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQ 167 (190)
T ss_pred HHHHHHHHHhcccCCCCCEEEEEEChhccc---cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 99999877643 25689999999999975 46678888888998889999999999999999999999998887666
Q ss_pred CC
Q psy38 155 SG 156 (193)
Q Consensus 155 ~~ 156 (193)
.+
T Consensus 168 ~~ 169 (190)
T cd04144 168 GG 169 (190)
T ss_pred cc
Confidence 65
No 24
>PTZ00099 rab6; Provisional
Probab=99.97 E-value=3.5e-30 Score=187.84 Aligned_cols=141 Identities=36% Similarity=0.608 Sum_probs=128.5
Q ss_pred eeccCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHh
Q psy38 6 YLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRH 85 (193)
Q Consensus 6 ~r~~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 85 (193)
+.|.++|.||+|.++..+.+.+ ++..+.+.||||+|++++..++..+++++|++|+|||++++++|+.+..|+..+...
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~-~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~ 81 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYL-DEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE 81 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEE-CCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999998 889999999999999999999999999999999999999999999999999999876
Q ss_pred cCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 86 IEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 86 ~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
.. ...|++|||||+||.+ .+.+..+++..++...++.|++|||++|.||+++|.+|++.+.+
T Consensus 82 ~~-~~~piilVgNK~DL~~---~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 82 RG-KDVIIALVGNKTDLGD---LRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred cC-CCCeEEEEEECccccc---ccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 43 4689999999999975 46688889999999889999999999999999999999998755
No 25
>PLN03110 Rab GTPase; Provisional
Probab=99.97 E-value=3.4e-30 Score=193.91 Aligned_cols=150 Identities=39% Similarity=0.684 Sum_probs=134.3
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||++|| ..++.||+|.++....+.+ ++..+.+++||++|++++..++..++++++++|+|||++++.+|+.+..
T Consensus 27 tLi~~l~~~~~~~~~~~t~g~~~~~~~v~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~ 105 (216)
T PLN03110 27 NILSRFTRNEFCLESKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQR 105 (216)
T ss_pred HHHHHHhcCCCCCCCCCceeEEEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHH
Confidence 567776 4578899999999999998 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCCC
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGD 157 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~~ 157 (193)
|+..+.... ..+.|+++|+||+|+.. .+.+..+++..++...+++++++||++|.|++++|.+++..+........
T Consensus 106 ~~~~~~~~~-~~~~piiiv~nK~Dl~~---~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~~~~~~ 181 (216)
T PLN03110 106 WLRELRDHA-DSNIVIMMAGNKSDLNH---LRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKA 181 (216)
T ss_pred HHHHHHHhC-CCCCeEEEEEEChhccc---ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 999988764 45689999999999976 46788888999999899999999999999999999999999988765443
No 26
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=3.3e-30 Score=191.76 Aligned_cols=175 Identities=35% Similarity=0.549 Sum_probs=145.7
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+++| ...|.||+|.++....+.+ +|..+.+.+||++|++.+..++..++++++++|+|||++++++|+.+.
T Consensus 20 Tsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~ 98 (199)
T cd04110 20 SSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVK 98 (199)
T ss_pred HHHHHHHhcCCCCCCcCccccceeEEEEEEE-CCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHH
Confidence 3677777 4578999999998888888 888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG 156 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~ 156 (193)
.|+..+.... ...|+++||||.|+.. ...+..+++..++...+++++++||++|.||+++|.+++..++......
T Consensus 99 ~~~~~i~~~~--~~~piivVgNK~Dl~~---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~~~~ 173 (199)
T cd04110 99 RWLQEIEQNC--DDVCKVLVGNKNDDPE---RKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDN 173 (199)
T ss_pred HHHHHHHHhC--CCCCEEEEEECccccc---ccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHHhhhcc
Confidence 9999987753 4578899999999976 4567788888999988999999999999999999999999998765544
Q ss_pred CccccCCccccccCCCCCcCccCchhhhcCCCCCCCC
Q psy38 157 DYKVEDGWEGIKTGFSRTNAVLDDDLMLAEPAKSSCC 193 (193)
Q Consensus 157 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~cc 193 (193)
..+.... ..+...+.++.++++++||
T Consensus 174 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 199 (199)
T cd04110 174 LAKQQQQ-----------QQNDVVKLPKNSKRKKRCC 199 (199)
T ss_pred CcccccC-----------CccccCccchhccccccCC
Confidence 3222211 2223344556678899999
No 27
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.97 E-value=1.2e-30 Score=191.31 Aligned_cols=145 Identities=26% Similarity=0.375 Sum_probs=126.3
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH-
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI- 75 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~- 75 (193)
+||++|| .++|.||++.++ .+.+.+ ++..+.+++|||+|+++|..+++.+++++|++|+|||++++.||+++
T Consensus 19 Tsli~~~~~~~f~~~~~pT~~~~~-~~~~~~-~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~ 96 (182)
T cd04172 19 TALLHVFAKDCFPENYVPTVFENY-TASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVL 96 (182)
T ss_pred HHHHHHHHhCCCCCccCCceeeee-EEEEEE-CCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHH
Confidence 4677777 678999998555 567788 89999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcC-HHHHHHH
Q psy38 76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQ-VENAFTA 144 (193)
Q Consensus 76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~e~f~~ 144 (193)
..|+..+.... +..|++|||||.||.++. ..+.++.+++.++|++.++ +|+||||++|.| |+++|..
T Consensus 97 ~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~ 174 (182)
T cd04172 97 KKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 174 (182)
T ss_pred HHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHH
Confidence 78999998864 358999999999996421 1346899999999999996 899999999998 9999999
Q ss_pred HHHHHH
Q psy38 145 VTQEIY 150 (193)
Q Consensus 145 i~~~i~ 150 (193)
+++.++
T Consensus 175 ~~~~~~ 180 (182)
T cd04172 175 ATLACV 180 (182)
T ss_pred HHHHHh
Confidence 998654
No 28
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.97 E-value=4.3e-30 Score=193.35 Aligned_cols=154 Identities=25% Similarity=0.374 Sum_probs=128.2
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+|||++| .++|.||++.++. ..+.+ ++..+.|.+|||+|++.|..+++.+|+++|++|+|||++++++|+.+.
T Consensus 15 TsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~-~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~ 92 (222)
T cd04173 15 TALLQVFAKDAYPGSYVPTVFENYT-ASFEI-DKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVL 92 (222)
T ss_pred HHHHHHHHcCCCCCccCCccccceE-EEEEE-CCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHH
Confidence 4677776 6689999986554 67778 899999999999999999999999999999999999999999999994
Q ss_pred -HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcC-HHHHHHH
Q psy38 77 -VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQ-VENAFTA 144 (193)
Q Consensus 77 -~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~e~f~~ 144 (193)
.|...+.... .+.|++|||||+||..+. ....++.+++..+++..++ .|+||||+++.+ |+++|..
T Consensus 93 ~~w~~~~~~~~--~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~ 170 (222)
T cd04173 93 KKWQGETQEFC--PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHV 170 (222)
T ss_pred HHHHHHHHhhC--CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHH
Confidence 5777665543 468999999999996531 1124788999999999996 899999999885 9999999
Q ss_pred HHHHHHHHhcCCCcc
Q psy38 145 VTQEIYNRVQSGDYK 159 (193)
Q Consensus 145 i~~~i~~~~~~~~~~ 159 (193)
++...+.+......+
T Consensus 171 ~~~~~~~~~~~~~~~ 185 (222)
T cd04173 171 ATVASLGRGHRQLRR 185 (222)
T ss_pred HHHHHHhccCCcccc
Confidence 999988766544333
No 29
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.97 E-value=1.9e-30 Score=189.23 Aligned_cols=145 Identities=30% Similarity=0.440 Sum_probs=125.3
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH-
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI- 75 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~- 75 (193)
+||+.|| .++|.||+|..+ .+.+.+ ++..+.+++|||+|+++|+.++..++++++++|+|||+++++||+.+
T Consensus 15 Tsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~-~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~ 92 (176)
T cd04133 15 TCMLICYTSNKFPTDYIPTVFDNF-SANVSV-DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVL 92 (176)
T ss_pred HHHHHHHhcCCCCCCCCCcceeee-EEEEEE-CCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHH
Confidence 3567776 668999998655 556777 89999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC-------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHH
Q psy38 76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSG-------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
..|+..+.... .+.|++|||||.||.+.. ..+.++.+++..+++..++ .|+||||++|.||+++|..+++
T Consensus 93 ~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~ 170 (176)
T cd04133 93 KKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIK 170 (176)
T ss_pred HHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHH
Confidence 68999998764 368999999999996521 1135889999999999998 6999999999999999999998
Q ss_pred HHH
Q psy38 148 EIY 150 (193)
Q Consensus 148 ~i~ 150 (193)
.+.
T Consensus 171 ~~~ 173 (176)
T cd04133 171 VVL 173 (176)
T ss_pred HHh
Confidence 763
No 30
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.97 E-value=4.1e-30 Score=193.33 Aligned_cols=150 Identities=29% Similarity=0.507 Sum_probs=125.9
Q ss_pred eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
+||++|| ..++.||+|.++..... ..+.+.+|||+|++.|..++..+++++|++|+|||+++++||+++..
T Consensus 14 TSLi~r~~~~~f~~~~~Tig~~~~~~~~-----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~ 88 (220)
T cd04126 14 TSLLHRYMERRFKDTVSTVGGAFYLKQW-----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELED 88 (220)
T ss_pred HHHHHHHhcCCCCCCCCccceEEEEEEe-----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 3677787 34578999877665432 35789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCC----------------CCCccCHHHHHHHHHhCC--------------CcE
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSG----------------VPREVSEAEAKAFASQND--------------ILH 127 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~----------------~~~~v~~~~~~~~~~~~~--------------~~~ 127 (193)
|+..+.... ....|++|||||.||.++. ..+.++.+++..++++.+ ++|
T Consensus 89 ~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~ 167 (220)
T cd04126 89 RFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMC 167 (220)
T ss_pred HHHHHHHhc-CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceE
Confidence 888887653 4468999999999996511 147789999999999876 689
Q ss_pred EEecCCCCcCHHHHHHHHHHHHHHHhcCCC
Q psy38 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGD 157 (193)
Q Consensus 128 ~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~~ 157 (193)
+||||++|.||+++|..+++.++....+..
T Consensus 168 ~E~SA~tg~~V~elf~~i~~~~~~~~~~~~ 197 (220)
T cd04126 168 FETSAKTGYNVDELFEYLFNLVLPLILAQR 197 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999988766553
No 31
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.97 E-value=5.6e-30 Score=192.69 Aligned_cols=148 Identities=28% Similarity=0.481 Sum_probs=132.0
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+++| ...|.||+|.+++.+.+.++++..+.+++|||+|++.+..++..+++++|++|+|||+++++||+.+.
T Consensus 14 SsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~ 93 (215)
T cd04109 14 TSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLE 93 (215)
T ss_pred HHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHH
Confidence 3677777 57899999999999988884456899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC--CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIE--PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 77 ~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
.|+..+..... ...+|+++||||.|+.+ .+.+..+++..+++..+++++++||++|.||+++|++++..+...
T Consensus 94 ~w~~~l~~~~~~~~~~~piilVgNK~DL~~---~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 94 DWYSMVRKVLKSSETQPLVVLVGNKTDLEH---NRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHhccccCCCceEEEEEECccccc---ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 99999988754 24578999999999975 467888899999999999999999999999999999999998875
No 32
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.97 E-value=4.4e-30 Score=189.94 Aligned_cols=146 Identities=27% Similarity=0.404 Sum_probs=124.8
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||++|| .++|.||+|.++ ...+.+ ++..+.+++|||+|+++|+.+++.+++++|++|+|||+++++||+++.
T Consensus 17 Tsli~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~ 94 (191)
T cd01875 17 TCLLICYTTNAFPKEYIPTVFDNY-SAQTAV-DGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVR 94 (191)
T ss_pred HHHHHHHHhCCCCcCCCCceEeee-EEEEEE-CCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHH
Confidence 4677777 578999998554 455677 889999999999999999999999999999999999999999999996
Q ss_pred -HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCC---------CCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHH
Q psy38 77 -VWMMEAKRHIEPHRPVFALVGCKLDLLQSGV---------PREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAV 145 (193)
Q Consensus 77 -~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i 145 (193)
.|+..+.... ...|++|||||.||.+... .+.++.+++.++++..+ ++|++|||++|.||+++|.++
T Consensus 95 ~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l 172 (191)
T cd01875 95 HKWHPEVCHHC--PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEA 172 (191)
T ss_pred HHHHHHHHhhC--CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHH
Confidence 5988887653 3689999999999965311 13477889999999988 599999999999999999999
Q ss_pred HHHHHH
Q psy38 146 TQEIYN 151 (193)
Q Consensus 146 ~~~i~~ 151 (193)
++.++.
T Consensus 173 ~~~~~~ 178 (191)
T cd01875 173 VRAVLN 178 (191)
T ss_pred HHHHhc
Confidence 998865
No 33
>PTZ00369 Ras-like protein; Provisional
Probab=99.97 E-value=6.4e-30 Score=188.75 Aligned_cols=150 Identities=33% Similarity=0.473 Sum_probs=130.6
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||++|| ...|.||++.++ .+.+.+ ++..+.+++|||+|+++|..++..+++++|++|+|||++++++|+.+.
T Consensus 19 TsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~ 96 (189)
T PTZ00369 19 SALTIQFIQNHFIDEYDPTIEDSY-RKQCVI-DEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIA 96 (189)
T ss_pred HHHHHHHhcCCCCcCcCCchhhEE-EEEEEE-CCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHH
Confidence 3677777 567889998555 567777 888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG 156 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~ 156 (193)
.|+..+.......+.|+++|+||.|+.+ .+.+...++..++...+++++++||++|.||+++|.++++.+.+..++.
T Consensus 97 ~~~~~i~~~~~~~~~piiiv~nK~Dl~~---~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~~~~~ 173 (189)
T PTZ00369 97 SFREQILRVKDKDRVPMILVGNKCDLDS---ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLKED 173 (189)
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccccc---ccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 9999998776556789999999999965 3567788888888888899999999999999999999999988765544
No 34
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.97 E-value=8.9e-30 Score=185.32 Aligned_cols=148 Identities=26% Similarity=0.407 Sum_probs=129.5
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||++|| .+.|.||++..+ ...+.+ ++..+.+++|||+|+++|..++..+++++|++|+|||++++.||+.+.
T Consensus 16 TsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~ 93 (172)
T cd04141 16 SAVTMQFISHSFPDYHDPTIEDAY-KQQARI-DNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEAS 93 (172)
T ss_pred HHHHHHHHhCCCCCCcCCcccceE-EEEEEE-CCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHH
Confidence 3677777 567889998444 556777 889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~ 154 (193)
.|+..+.........|+++||||.|+.+ .+.++.+++.++++.++++|++|||++|.||+++|+++++.+.+...
T Consensus 94 ~~~~~i~~~~~~~~~piilvgNK~Dl~~---~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~ 168 (172)
T cd04141 94 EFKKLITRVRLTEDIPLVLVGNKVDLES---QRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRRKES 168 (172)
T ss_pred HHHHHHHHhcCCCCCCEEEEEEChhhhh---cCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHHHhcc
Confidence 9988887765455789999999999976 46788999999999999999999999999999999999998887443
No 35
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.97 E-value=1.1e-29 Score=188.60 Aligned_cols=143 Identities=23% Similarity=0.492 Sum_probs=126.4
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||++|| .++|.||+|.++....+.+ ++..+.++||||+|+++|..++..+|+++|++|+|||++++.||+.+.
T Consensus 9 TsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~-~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~ 87 (200)
T smart00176 9 TTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVP 87 (200)
T ss_pred HHHHHHHhcCCCCCCCCCceeEEEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHH
Confidence 4677777 5678999999999999888 889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
.|+..+.... ...|++|||||+|+.. +.+..+. ..++...++.|++|||++|.||.++|.+++..+.+.
T Consensus 88 ~w~~~i~~~~--~~~piilvgNK~Dl~~----~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 88 NWHRDLVRVC--ENIPIVLCGNKVDVKD----RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHhC--CCCCEEEEEECccccc----ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 9999998864 3689999999999864 3344443 478888899999999999999999999999998764
No 36
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=7.4e-30 Score=186.63 Aligned_cols=145 Identities=26% Similarity=0.400 Sum_probs=125.5
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH-
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI- 75 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~- 75 (193)
+||++|| ..+|.||++.++ .+.+.+ ++..+.+++|||+|++.|..+++.+++++|++|+|||+++++||+++
T Consensus 15 Tsli~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~ 92 (178)
T cd04131 15 TALLQVFAKDCYPETYVPTVFENY-TASFEI-DEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVL 92 (178)
T ss_pred HHHHHHHHhCcCCCCcCCceEEEE-EEEEEE-CCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHH
Confidence 4677777 678999998665 467788 88999999999999999999999999999999999999999999996
Q ss_pred HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcC-HHHHHHH
Q psy38 76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQ-VENAFTA 144 (193)
Q Consensus 76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~e~f~~ 144 (193)
..|+..+.... +..|++|||||.||.++. ..+.++.+++.+++++.++ +|+||||++|.| |+++|..
T Consensus 93 ~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~ 170 (178)
T cd04131 93 KKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHV 170 (178)
T ss_pred HHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHH
Confidence 78999998864 368999999999996421 1246899999999999997 899999999995 9999999
Q ss_pred HHHHHH
Q psy38 145 VTQEIY 150 (193)
Q Consensus 145 i~~~i~ 150 (193)
+++..+
T Consensus 171 ~~~~~~ 176 (178)
T cd04131 171 ATMACL 176 (178)
T ss_pred HHHHHh
Confidence 999655
No 37
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=3.2e-29 Score=185.30 Aligned_cols=147 Identities=43% Similarity=0.698 Sum_probs=130.2
Q ss_pred eeeeeec------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH
Q psy38 2 VTLLYLY------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI 75 (193)
Q Consensus 2 ~sll~r~------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 75 (193)
+||++|| ...+.||++.++....+.+ ++..+.+.||||+|++++..++..+++++|++|+|||++++++|+++
T Consensus 14 TSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~ 92 (191)
T cd04112 14 TCLLVRFKDGAFLNGNFIATVGIDFRNKVVTV-DGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNI 92 (191)
T ss_pred HHHHHHHhcCCCCccCcCCcccceeEEEEEEE-CCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHH
Confidence 3677776 2468899998998888888 88899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
..|+..+.... ....|+++|+||.|+.. .+.+..+++..++...+++|+++||++|.|++++|.+|++.+....
T Consensus 93 ~~~~~~i~~~~-~~~~piiiv~NK~Dl~~---~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 93 RAWLTEIKEYA-QEDVVIMLLGNKADMSG---ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRK 166 (191)
T ss_pred HHHHHHHHHhC-CCCCcEEEEEEcccchh---ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 99999998864 44689999999999965 3667778888999989999999999999999999999999987763
No 38
>PLN03108 Rab family protein; Provisional
Probab=99.97 E-value=8.3e-29 Score=185.65 Aligned_cols=184 Identities=41% Similarity=0.713 Sum_probs=148.9
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+.+..
T Consensus 21 tLi~~l~~~~~~~~~~~ti~~~~~~~~i~~-~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~ 99 (210)
T PLN03108 21 CLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS 99 (210)
T ss_pred HHHHHHHhCCCCCCCCCCccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHH
Confidence 567776 4568899999998888888 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCCC
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGD 157 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~~ 157 (193)
|+..+.... ....|+++|+||.|+.. .+.++.+++.++++.++++++++||+++.||+++|.++++.++++..+..
T Consensus 100 ~~~~~~~~~-~~~~piiiv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~~~~~~ 175 (210)
T PLN03108 100 WLEDARQHA-NANMTIMLIGNKCDLAH---RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGV 175 (210)
T ss_pred HHHHHHHhc-CCCCcEEEEEECccCcc---ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 999887654 35689999999999976 46688899999999999999999999999999999999999998776554
Q ss_pred ccccCCccccccC-CCCCcCccCchhhhcCCCCCCCC
Q psy38 158 YKVEDGWEGIKTG-FSRTNAVLDDDLMLAEPAKSSCC 193 (193)
Q Consensus 158 ~~~~~~~~~~k~~-~~~~~~~~~~~~~~~~~~~~~cc 193 (193)
........++... +.-|.+-.-++ ....|.++||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 210 (210)
T PLN03108 176 FDVSNESYGIKVGYGAIPGASGGRD--GTSSQGGGCC 210 (210)
T ss_pred ccccccccccccccCCCCCCCCCcc--ccccCCCCCC
Confidence 4333333333322 23333333333 2345789999
No 39
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.97 E-value=3.3e-29 Score=181.07 Aligned_cols=145 Identities=43% Similarity=0.789 Sum_probs=130.0
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+++| ...+.||+|.++..+.+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++++|+.+.
T Consensus 16 Tsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~ 94 (166)
T cd04122 16 SCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS 94 (166)
T ss_pred HHHHHHHhcCCCCCCCCcccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHH
Confidence 3567776 5678899999998888888 888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
.|+..+.... ....|+++||||+|+.. .+.++.+++.++++..++++++|||++|.|++++|.++++.+.+
T Consensus 95 ~~~~~~~~~~-~~~~~iiiv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 95 SWLTDARNLT-NPNTVIFLIGNKADLEA---QRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHhC-CCCCeEEEEEECccccc---ccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 9999987754 34689999999999976 46688889999999999999999999999999999999988765
No 40
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=1.1e-28 Score=182.01 Aligned_cols=151 Identities=38% Similarity=0.639 Sum_probs=133.1
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+++| ...|.||+|.++....+.+ ++..+.+++||++|++.+..++..+++++|++|+|||++++++|..+.
T Consensus 14 Ssli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~ 92 (188)
T cd04125 14 SSLLKRFTEDEFSESTKSTIGVDFKIKTVYI-ENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLK 92 (188)
T ss_pred HHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHH
Confidence 3677777 4458999998898888888 888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG 156 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~ 156 (193)
.|+..+.... ....|+++||||.|+.+ .+.+..+.+..++...+++++++||++|.|++++|.++++.+..+....
T Consensus 93 ~~~~~i~~~~-~~~~~~ivv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~~~~~ 168 (188)
T cd04125 93 FWINEINRYA-RENVIKVIVANKSDLVN---NKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIKRLEEQ 168 (188)
T ss_pred HHHHHHHHhC-CCCCeEEEEEECCCCcc---cccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhcC
Confidence 9999998764 34588999999999976 3667888888999888999999999999999999999999998766555
Q ss_pred C
Q psy38 157 D 157 (193)
Q Consensus 157 ~ 157 (193)
+
T Consensus 169 ~ 169 (188)
T cd04125 169 E 169 (188)
T ss_pred c
Confidence 3
No 41
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.96 E-value=8.8e-29 Score=177.91 Aligned_cols=143 Identities=35% Similarity=0.617 Sum_probs=133.1
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| .+.|.||+|.++....+.+ ++..+.+++||++|+++|..++..+++++|++|+|||+++++||+.+..
T Consensus 14 sl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~ 92 (162)
T PF00071_consen 14 SLINRLINGEFPENYIPTIGIDSYSKEVSI-DGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKK 92 (162)
T ss_dssp HHHHHHHHSSTTSSSETTSSEEEEEEEEEE-TTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHH
T ss_pred HHHHHHHhhccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 566666 7789999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
|+..+..... ..+|+++||||.|+.+ .+.++.+++++++++++++|++|||+++.||.++|..+++.+.
T Consensus 93 ~~~~i~~~~~-~~~~iivvg~K~D~~~---~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 93 WLEEIQKYKP-EDIPIIVVGNKSDLSD---EREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp HHHHHHHHST-TTSEEEEEEETTTGGG---GSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred cccccccccc-ccccceeeeccccccc---cccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 9999998865 5689999999999976 5789999999999999999999999999999999999999875
No 42
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.96 E-value=8.8e-29 Score=180.99 Aligned_cols=147 Identities=42% Similarity=0.673 Sum_probs=130.0
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecC---------CcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRD---------GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS 68 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~---------~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 68 (193)
||+++| ...|.||+|.++....+.+.. +..+.+++|||+|+++|..++..+++++|++|+|||+++
T Consensus 19 sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 98 (180)
T cd04127 19 SFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTN 98 (180)
T ss_pred HHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 567776 678899999999888777621 467899999999999999999999999999999999999
Q ss_pred hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 69 RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 69 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
++||.++..|+..+.......++|+++||||.|+.+ .+.++.+++.+++...+++++++||++|.|++++|+++++.
T Consensus 99 ~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~ 175 (180)
T cd04127 99 EQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED---QRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERLLDL 175 (180)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh---cCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 999999999999998765455789999999999976 36678888999999999999999999999999999999998
Q ss_pred HHHH
Q psy38 149 IYNR 152 (193)
Q Consensus 149 i~~~ 152 (193)
++++
T Consensus 176 ~~~~ 179 (180)
T cd04127 176 VMKR 179 (180)
T ss_pred HHhh
Confidence 8764
No 43
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.96 E-value=9.8e-29 Score=181.34 Aligned_cols=147 Identities=22% Similarity=0.415 Sum_probs=125.7
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||++|| .++|.||+|.++..+.+.+ ++..+.+++||++|+++|..++..+++++|++++|||+++++||+++.
T Consensus 14 TsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~ 92 (182)
T cd04128 14 TSLMVKYVEGEFDEDYIQTLGVNFMEKTISI-RGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIK 92 (182)
T ss_pred HHHHHHHHhCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHH
Confidence 4677777 5679999999999888998 888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCC--CCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGV--PREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
.|+..+.... ....|+ +||||+|+..+.. ......+++.++++.+++++++|||++|.|++++|.++++.+.+
T Consensus 93 ~~~~~~~~~~-~~~~pi-lVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 93 EWYRQARGFN-KTAIPI-LVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHhC-CCCCEE-EEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999998764 345675 8899999953211 11122467788999999999999999999999999999998875
No 44
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.96 E-value=1.5e-28 Score=176.89 Aligned_cols=142 Identities=36% Similarity=0.634 Sum_probs=127.7
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+++| .+.|.||+|.++....+.+ ++..+.+++||++|++++..++..+++++|++++|||+++++||+.+.
T Consensus 14 Tsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~ 92 (161)
T cd04117 14 TCLLCRFTDNEFHSSHISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIM 92 (161)
T ss_pred HHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHH
Confidence 3567666 5678999999998888888 888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
.|+..+.... ....|+++||||.|+.+ .+.+..+++..+++..+++|++|||++|.||+++|.+|++.
T Consensus 93 ~~~~~~~~~~-~~~~~iilvgnK~Dl~~---~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 93 KWVSDVDEYA-PEGVQKILIGNKADEEQ---KRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred HHHHHHHHhC-CCCCeEEEEEECccccc---ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 9999998764 45689999999999976 47788899999999999999999999999999999999864
No 45
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.96 E-value=2.4e-28 Score=177.48 Aligned_cols=148 Identities=32% Similarity=0.519 Sum_probs=128.5
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||++|| .++|.||++.++..+.+.+ +|..+.+++|||+|+++|..++..+++++|++++|||++++++|+.+.
T Consensus 14 Tsli~~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~ 92 (170)
T cd04108 14 TCLINRFCKDVFDKNYKATIGVDFEMERFEI-LGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTR 92 (170)
T ss_pred HHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHH
Confidence 3677777 6688999999998888888 888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
.|+..+.....+..+|+++||||.|+.... ...+..+++..++.+++.+|+++||++|.|++++|..++..+.+
T Consensus 93 ~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 93 QWLEDALKENDPSSVLLFLVGTKKDLSSPA-QYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred HHHHHHHHhcCCCCCeEEEEEEChhcCccc-cccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999876555668899999999985421 12345667778888888999999999999999999999998754
No 46
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.96 E-value=3.1e-28 Score=177.69 Aligned_cols=144 Identities=25% Similarity=0.367 Sum_probs=122.3
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||++|| .+.|.||++.++. ..+.+ ++..+.+++|||+|+++|..++..+++++|++|+|||++++++|+.+.
T Consensus 15 Tsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~ 92 (175)
T cd01874 15 TCLLISYTTNKFPSEYVPTVFDNYA-VTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVK 92 (175)
T ss_pred HHHHHHHHcCCCCCCCCCceeeeeE-EEEEE-CCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHH
Confidence 3567776 5789999986554 45677 888999999999999999999999999999999999999999999996
Q ss_pred -HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHH
Q psy38 77 -VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAV 145 (193)
Q Consensus 77 -~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i 145 (193)
.|+..+.... .+.|+++||||.|+..+. ..+.++.+++.+++++.+ +.|++|||++|.|++++|+.+
T Consensus 93 ~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~ 170 (175)
T cd01874 93 EKWVPEITHHC--PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEA 170 (175)
T ss_pred HHHHHHHHHhC--CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHH
Confidence 5988887653 358999999999986531 125688899999998887 699999999999999999999
Q ss_pred HHHH
Q psy38 146 TQEI 149 (193)
Q Consensus 146 ~~~i 149 (193)
+..+
T Consensus 171 ~~~~ 174 (175)
T cd01874 171 ILAA 174 (175)
T ss_pred HHHh
Confidence 8854
No 47
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.96 E-value=1.3e-27 Score=176.79 Aligned_cols=150 Identities=31% Similarity=0.565 Sum_probs=129.3
Q ss_pred eeeeeec-----c-CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH
Q psy38 2 VTLLYLY-----I-QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI 75 (193)
Q Consensus 2 ~sll~r~-----~-~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 75 (193)
+||+++| . ..|.||+|.++..+.+.+ ++..+.+.+||++|++++..++..+++++|++++|||++++++|+.+
T Consensus 14 SsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~ 92 (193)
T cd04118 14 TSLVERYVHHRFLVGPYQNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERA 92 (193)
T ss_pred HHHHHHHHhCCcCCcCcccceeeEEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHH
Confidence 3677777 2 368899998888888999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC-CCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38 76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSG-VPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154 (193)
Q Consensus 76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~ 154 (193)
..|+..+.... .+.|+++|+||.|+.... ..+.+...++.+++...+++++++||+++.|++++|+++++.+.++..
T Consensus 93 ~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~ 170 (193)
T cd04118 93 KFWVKELQNLE--EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRAN 170 (193)
T ss_pred HHHHHHHHhcC--CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 99999987752 368999999999985421 234566777888888888999999999999999999999999987554
No 48
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=4.8e-28 Score=182.58 Aligned_cols=143 Identities=24% Similarity=0.512 Sum_probs=125.4
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||++|| ..+|.||+|.++....+.. ++..+.+.+|||+|+++|..++..++++++++|+|||++++++|+.+.
T Consensus 27 Tsli~~~~~~~f~~~~~~tig~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~ 105 (219)
T PLN03071 27 TTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP 105 (219)
T ss_pred HHHHHHHhhCCCCCccCCccceeEEEEEEEE-CCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHH
Confidence 3667776 6689999999999888888 778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
.|+..+.... ...|++|||||.|+.. +.+..++. +++...+++|++|||++|.||+++|.++++.+.+.
T Consensus 106 ~w~~~i~~~~--~~~piilvgNK~Dl~~----~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 106 TWHRDLCRVC--ENIPIVLCGNKVDVKN----RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred HHHHHHHHhC--CCCcEEEEEEchhhhh----ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence 9999998764 4689999999999964 33445555 77888889999999999999999999999988754
No 49
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.96 E-value=5.1e-28 Score=178.57 Aligned_cols=146 Identities=29% Similarity=0.453 Sum_probs=122.7
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||++|| ...|.||++.++. ..+.+ ++..+.+++|||+|++.|..++..+++++|++|+|||+++++||+.+.
T Consensus 14 Tsli~~~~~~~~~~~~~~t~~~~~~-~~i~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~ 91 (189)
T cd04134 14 TSLLNVFTRGYFPQVYEPTVFENYV-HDIFV-DGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVE 91 (189)
T ss_pred HHHHHHHhcCCCCCccCCcceeeeE-EEEEE-CCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHH
Confidence 3677777 5678999986554 55667 788899999999999999999999999999999999999999999996
Q ss_pred -HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCC---------CCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHH
Q psy38 77 -VWMMEAKRHIEPHRPVFALVGCKLDLLQSGV---------PREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAV 145 (193)
Q Consensus 77 -~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i 145 (193)
.|+..+.... ...|+++||||.||..... ...+..+++..++...+ +.|++|||++|.||+++|.++
T Consensus 92 ~~~~~~i~~~~--~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l 169 (189)
T cd04134 92 SKWLGEIREHC--PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEA 169 (189)
T ss_pred HHHHHHHHHhC--CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHH
Confidence 5999988753 3689999999999965311 12467788888988877 689999999999999999999
Q ss_pred HHHHHH
Q psy38 146 TQEIYN 151 (193)
Q Consensus 146 ~~~i~~ 151 (193)
++.++.
T Consensus 170 ~~~~~~ 175 (189)
T cd04134 170 ARVALN 175 (189)
T ss_pred HHHHhc
Confidence 998874
No 50
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.96 E-value=7.5e-28 Score=173.60 Aligned_cols=145 Identities=29% Similarity=0.553 Sum_probs=130.3
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+++| ...|.||+|.++..+.+.+ ++..+.+++|||+|++.+..++..+++++|++|+|||++++++|+.+.
T Consensus 14 Tsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~ 92 (168)
T cd04119 14 SCIIKRYCEGRFVSKYLPTIGIDYGVKKVSV-RNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALD 92 (168)
T ss_pred HHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHH
Confidence 3677776 5688999999999888988 889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC----CCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEP----HRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 77 ~~~~~i~~~~~~----~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
.|+..+...... ...|+++|+||+|+.+ ...+..+++..++...+++++++||++|.|++++|.+|++.++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 93 SWLKEMKQEGGPHGNMENIVVVVCANKIDLTK---HRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHhccccccCCCceEEEEEEchhccc---ccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 999999887653 5789999999999964 3567888888899888899999999999999999999998875
No 51
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.96 E-value=8.5e-28 Score=173.92 Aligned_cols=144 Identities=43% Similarity=0.697 Sum_probs=129.3
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| .+.|.||+|.++....+.+ ++..+.+++||++|++.+..++..+++++|++|+|||++++++|..+..
T Consensus 18 sl~~~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~ 96 (167)
T cd01867 18 CLLLRFSEDSFNPSFISTIGIDFKIRTIEL-DGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRN 96 (167)
T ss_pred HHHHHHhhCcCCcccccCccceEEEEEEEE-CCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHH
Confidence 567776 6688999999998888888 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
|+..+.... ....|+++||||.|+.+ .+.+..+++..++..++++++++||++|.|++++|.++++.+..
T Consensus 97 ~~~~i~~~~-~~~~p~iiv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 97 WMRNIEEHA-SEDVERMLVGNKCDMEE---KRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHhC-CCCCcEEEEEECccccc---ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999998763 45689999999999976 35678888889999999999999999999999999999998865
No 52
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.96 E-value=4.9e-28 Score=174.05 Aligned_cols=143 Identities=32% Similarity=0.502 Sum_probs=125.5
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||++|| .+.|.||++ +.+.+.+.+ ++..+.+++|||+|+++|..++..+++++|++++|||++++++|+.+.
T Consensus 15 Tsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~ 92 (163)
T cd04136 15 SALTVQFVQGIFVEKYDPTIE-DSYRKQIEV-DGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQ 92 (163)
T ss_pred HHHHHHHHhCCCCcccCCchh-hhEEEEEEE-CCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHH
Confidence 3667776 567889986 666777888 888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
.|+..+.......+.|+++|+||+|+.. .+.+..+++..+++.++++++++||++|.|++++|.++++.+
T Consensus 93 ~~~~~i~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 93 DLREQILRVKDTENVPMVLVGNKCDLED---ERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccccc---cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 9999998876556789999999999965 356777788888888889999999999999999999998764
No 53
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.96 E-value=1.1e-27 Score=173.09 Aligned_cols=144 Identities=36% Similarity=0.606 Sum_probs=127.5
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...|.||+|.++....+.. ++..+.+++|||+|++++..++..+++++|++++|||++++++|+.+..
T Consensus 16 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~ 94 (165)
T cd01865 16 SFLFRYADDSFTSAFVSTVGIDFKVKTVFR-NDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD 94 (165)
T ss_pred HHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHH
Confidence 677776 4678999998888888877 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
|+..+.... ....|+++||||+|+.+ .+.+..+++.+++...+++++++||++|.|++++|++++..+.+
T Consensus 95 ~~~~i~~~~-~~~~piivv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 95 WSTQIKTYS-WDNAQVILVGNKCDMED---ERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDIICD 164 (165)
T ss_pred HHHHHHHhC-CCCCCEEEEEECcccCc---ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 999987654 44688999999999976 35677788888998889999999999999999999999987654
No 54
>KOG0393|consensus
Probab=99.96 E-value=7.9e-28 Score=174.65 Aligned_cols=150 Identities=29% Similarity=0.384 Sum_probs=132.5
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH-
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI- 75 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~- 75 (193)
+|||-.| .++|.||+. |-+...+.+.+|+.+.+.+|||+|+++|.++++..|.++|+|++||++.+++||+++
T Consensus 18 T~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~ 96 (198)
T KOG0393|consen 18 TCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVK 96 (198)
T ss_pred eEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHH
Confidence 4566555 889999995 888888898239999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHH
Q psy38 76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAV 145 (193)
Q Consensus 76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i 145 (193)
.+|+.++..++ +..|+||||+|.||..+. ....++.+++..++++.|. .|+||||+++.|+.++|+..
T Consensus 97 ~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a 174 (198)
T KOG0393|consen 97 SKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEA 174 (198)
T ss_pred hhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHH
Confidence 56999999987 468999999999997532 1257889999999999995 89999999999999999999
Q ss_pred HHHHHHHhc
Q psy38 146 TQEIYNRVQ 154 (193)
Q Consensus 146 ~~~i~~~~~ 154 (193)
+..++...+
T Consensus 175 ~~~~l~~~~ 183 (198)
T KOG0393|consen 175 IRAALRPPQ 183 (198)
T ss_pred HHHHhcccc
Confidence 999988654
No 55
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.96 E-value=1e-27 Score=172.87 Aligned_cols=143 Identities=28% Similarity=0.454 Sum_probs=125.3
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+++| .+.|.||++.. ....+.+ ++..+.+++|||+|++++..++..+++++|++++|||++++.+|+.+.
T Consensus 15 Tsli~~~~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~ 92 (164)
T cd04175 15 SALTVQFVQGIFVEKYDPTIEDS-YRKQVEV-DGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQ 92 (164)
T ss_pred HHHHHHHHhCCCCcccCCcchhe-EEEEEEE-CCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHH
Confidence 3667776 56788999744 4567778 888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
.|+..+.......+.|+++|+||+|+.. ...+..+++..+++..+++++++||++|.|++++|.++++.+
T Consensus 93 ~~~~~i~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 93 DLREQILRVKDTEDVPMILVGNKCDLED---ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred HHHHHHHHhcCCCCCCEEEEEECCcchh---ccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 9999998776566789999999999976 356777778888888899999999999999999999998765
No 56
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=2.1e-27 Score=175.98 Aligned_cols=135 Identities=29% Similarity=0.440 Sum_probs=112.6
Q ss_pred cCCCCCccee-eEEEEEE--------EecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-HH
Q psy38 9 IQISDPTVGV-DFFARLV--------TMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP-VW 78 (193)
Q Consensus 9 ~~~~~pt~~~-~~~~~~~--------~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~ 78 (193)
.++|.||+|. +.+.... .+ +|..+.+++|||+|++. .+...+|+++|++|+|||++++.||+++. .|
T Consensus 34 ~~~~~pTi~~~~~~~~~~~~~~~~~~~~-~~~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w 110 (195)
T cd01873 34 LATHVPTVWAIDQYRVCQEVLERSRDVV-DGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMW 110 (195)
T ss_pred ccccCCceecccceeEEeeeccccceee-CCEEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHH
Confidence 4678999973 4333322 46 88999999999999976 35677999999999999999999999996 59
Q ss_pred HHHHHHhcCCCCCeEEEEeeCCCCCCCC----------------CCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHH
Q psy38 79 MMEAKRHIEPHRPVFALVGCKLDLLQSG----------------VPREVSEAEAKAFASQNDILHFETSSRSGFQVENAF 142 (193)
Q Consensus 79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~----------------~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f 142 (193)
+..+.... ...|+++||||+||.... ..+.++.+++.+++++.+++|+||||++|.||+++|
T Consensus 111 ~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F 188 (195)
T cd01873 111 YPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVF 188 (195)
T ss_pred HHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHH
Confidence 99887764 357999999999996420 136789999999999999999999999999999999
Q ss_pred HHHHHH
Q psy38 143 TAVTQE 148 (193)
Q Consensus 143 ~~i~~~ 148 (193)
..+++.
T Consensus 189 ~~~~~~ 194 (195)
T cd01873 189 DNAIRA 194 (195)
T ss_pred HHHHHh
Confidence 999864
No 57
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.95 E-value=5.1e-27 Score=172.76 Aligned_cols=152 Identities=26% Similarity=0.420 Sum_probs=126.4
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+++| .+.|.||++.++... +...++..+.+++|||+|+++|..++..+++++|++|+|||+++++||+.+.
T Consensus 14 Tsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~ 92 (187)
T cd04132 14 TCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVE 92 (187)
T ss_pred HHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHH
Confidence 3667776 567889998776544 5552478899999999999999999999999999999999999999999995
Q ss_pred -HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC-CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 77 -VWMMEAKRHIEPHRPVFALVGCKLDLLQSG-VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 77 -~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
.|+..+.... .+.|+++||||.|+.... ..+.+...++.+++...++ +++++||++|.||+++|..+++.++...
T Consensus 93 ~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 170 (187)
T cd04132 93 DKWFPEVNHFC--PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKE 170 (187)
T ss_pred HHHHHHHHHhC--CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhh
Confidence 5988877543 368999999999996531 2245778899999999988 9999999999999999999999998766
Q ss_pred cCC
Q psy38 154 QSG 156 (193)
Q Consensus 154 ~~~ 156 (193)
...
T Consensus 171 ~~~ 173 (187)
T cd04132 171 GKA 173 (187)
T ss_pred hhh
Confidence 554
No 58
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.95 E-value=2.5e-27 Score=172.73 Aligned_cols=142 Identities=29% Similarity=0.405 Sum_probs=121.1
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP- 76 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~- 76 (193)
||+.|| .++|.||++ +.+...+.+ ++..+.+.+|||+|++.|..++..+++++|++|+|||+++++||+++.
T Consensus 16 sli~~~~~~~f~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~ 93 (174)
T cd01871 16 CLLISYTTNAFPGEYIPTVF-DNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRA 93 (174)
T ss_pred HHHHHHhcCCCCCcCCCcce-eeeEEEEEE-CCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHH
Confidence 566554 678999996 555666777 889999999999999999999999999999999999999999999995
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT 146 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~ 146 (193)
.|+..+.... ...|+++||||.|+.+.. ..+.++.+++.+++++.+. ++++|||++|.|++++|+.++
T Consensus 94 ~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~ 171 (174)
T cd01871 94 KWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAI 171 (174)
T ss_pred HHHHHHHHhC--CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHH
Confidence 6888887653 368999999999995421 1246889999999999885 999999999999999999998
Q ss_pred HH
Q psy38 147 QE 148 (193)
Q Consensus 147 ~~ 148 (193)
+.
T Consensus 172 ~~ 173 (174)
T cd01871 172 RA 173 (174)
T ss_pred Hh
Confidence 64
No 59
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.95 E-value=2.6e-27 Score=170.46 Aligned_cols=142 Identities=31% Similarity=0.483 Sum_probs=124.4
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| .+.+.||++ +++...+.+ +|..+.+++|||+|+++|..++..+++++|++|+|||++++.+|+++..
T Consensus 16 sl~~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~ 93 (163)
T cd04176 16 ALTVQFVSGTFIEKYDPTIE-DFYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKP 93 (163)
T ss_pred HHHHHHHcCCCCCCCCCchh-heEEEEEEE-CCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHH
Confidence 566665 567889986 777788888 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
|+..+.......+.|+++|+||.|+.. ...+...++..++...+++++++||+++.|++++|.++++.+
T Consensus 94 ~~~~~~~~~~~~~~piviv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 94 MRDQIVRVKGYEKVPIILVGNKVDLES---EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred HHHHHHHhcCCCCCCEEEEEECccchh---cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 999998875556789999999999965 356677778888888889999999999999999999998754
No 60
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.95 E-value=4.1e-27 Score=170.02 Aligned_cols=144 Identities=43% Similarity=0.680 Sum_probs=128.5
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||++|| ...|.||++.++....+.+ ++..+.+++||++|++++..++..+++++|++|+|||+++++||..+..
T Consensus 17 sli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~ 95 (166)
T cd01869 17 CLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ 95 (166)
T ss_pred HHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHH
Confidence 566776 4578899999999898988 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
|+..+.... ....|+++|+||.|+.. .+.+..+++..++...+++++++||++|.|++++|.++++.+.+
T Consensus 96 ~~~~~~~~~-~~~~~~iiv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 165 (166)
T cd01869 96 WLQEIDRYA-SENVNKLLVGNKCDLTD---KRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREIKK 165 (166)
T ss_pred HHHHHHHhC-CCCCcEEEEEEChhccc---ccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 999998764 34689999999999976 35678888999999999999999999999999999999998753
No 61
>KOG0395|consensus
Probab=99.95 E-value=1.3e-26 Score=171.23 Aligned_cols=148 Identities=35% Similarity=0.474 Sum_probs=135.7
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
+|+.|| .++|.||++ +.+.+.+.+ ++..+.+.|+||+|+++|..+...++.+++++++||+++++.||+.+..
T Consensus 18 al~~qf~~~~f~~~y~ptie-d~y~k~~~v-~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~ 95 (196)
T KOG0395|consen 18 ALTIQFLTGRFVEDYDPTIE-DSYRKELTV-DGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQ 95 (196)
T ss_pred hheeeecccccccccCCCcc-ccceEEEEE-CCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHH
Confidence 455555 889999997 899999999 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcC
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQS 155 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~ 155 (193)
+++.|.........|+++||||+||.. .+.|+.+++..++..++++|+|+||+.+.+|+++|..+++.+......
T Consensus 96 l~~~I~r~~~~~~~PivlVGNK~Dl~~---~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~~~~~ 170 (196)
T KOG0395|consen 96 LREQILRVKGRDDVPIILVGNKCDLER---ERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREIRLPREG 170 (196)
T ss_pred HHHHHHHhhCcCCCCEEEEEEcccchh---ccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHhhhcc
Confidence 999997666667789999999999987 589999999999999999999999999999999999999998884443
No 62
>PLN03118 Rab family protein; Provisional
Probab=99.95 E-value=1.7e-26 Score=173.29 Aligned_cols=147 Identities=39% Similarity=0.642 Sum_probs=126.6
Q ss_pred eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
+||+++| ...+.||+|.++....+.+ ++..+.+.||||+|+++|..++..+++++|++|+|||++++++|+.+..
T Consensus 28 Tsli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~ 106 (211)
T PLN03118 28 SSLLVSFISSSVEDLAPTIGVDFKIKQLTV-GGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSD 106 (211)
T ss_pred HHHHHHHHhCCCCCcCCCceeEEEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence 3566676 4688999998888888888 8888999999999999999999999999999999999999999999976
Q ss_pred -HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 78 -WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 78 -~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
|...+..+......|+++|+||.|+.. .+.+..+++..++...++.|+++||+++.|++++|.+|.+.+...
T Consensus 107 ~~~~~~~~~~~~~~~~~ilv~NK~Dl~~---~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 107 VWGKEVELYSTNQDCVKMLVGNKVDRES---ERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccccc---cCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 666555444344678889999999976 356778888889988999999999999999999999999999764
No 63
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.95 E-value=1.4e-26 Score=167.47 Aligned_cols=142 Identities=25% Similarity=0.499 Sum_probs=123.5
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||++|| ...+.||++.++....+.. ++..+.+.+|||+|++++..++..++.++|++|+|||++++++|+.+.
T Consensus 14 Tsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 92 (166)
T cd00877 14 TTFVKRHLTGEFEKKYVATLGVEVHPLDFHT-NRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVP 92 (166)
T ss_pred HHHHHHHHhCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHH
Confidence 3677776 5578999999988888887 888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
.|+..+..... ..|+++||||.|+.. +.+.. +..+++...++.++++||++|.|++++|.+|++.+.+
T Consensus 93 ~~~~~i~~~~~--~~piiiv~nK~Dl~~----~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 93 NWHRDLVRVCG--NIPIVLCGNKVDIKD----RKVKA-KQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred HHHHHHHHhCC--CCcEEEEEEchhccc----ccCCH-HHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 99999988754 689999999999964 23333 3456777778899999999999999999999998875
No 64
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.95 E-value=1e-26 Score=168.81 Aligned_cols=143 Identities=42% Similarity=0.704 Sum_probs=128.2
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccc-cchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFR-SITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
||+++| ...+.||++.++....+.+ ++..+.+++||++|++++. .++..+++++|++|+|||++++.+|+.+.
T Consensus 17 sli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 95 (170)
T cd04115 17 CLTYRFCAGRFPERTEATIGVDFRERTVEI-DGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLP 95 (170)
T ss_pred HHHHHHHhCCCCCccccceeEEEEEEEEEE-CCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHH
Confidence 567776 5678999999999999998 8889999999999999886 57889999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCC---CcCHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS---GFQVENAFTAVTQEI 149 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~e~f~~i~~~i 149 (193)
.|+..+.........|+++|+||.|+.. .+.++.+++.+++...+++|+++||++ +.+++++|.++++.+
T Consensus 96 ~~~~~~~~~~~~~~~p~iiv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 96 SWIEECEQHSLPNEVPRILVGNKCDLRE---QIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccchh---hcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 9999999876566799999999999976 467888889999999889999999999 899999999998765
No 65
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.95 E-value=1.7e-26 Score=166.57 Aligned_cols=142 Identities=48% Similarity=0.749 Sum_probs=127.2
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||+|.++....+.. ++..+.+++||++|++++..++..++++++++|+|||++++.+|+++..
T Consensus 18 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 96 (165)
T cd01868 18 NLLSRFTRNEFNLDSKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVER 96 (165)
T ss_pred HHHHHHhcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHH
Confidence 566776 5578899999999999988 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
|+..+.... ..+.|+++|+||.|+.. .+.+..++...++...+++++++||++|.|++++|++++..+
T Consensus 97 ~~~~~~~~~-~~~~pi~vv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 97 WLKELRDHA-DSNIVIMLVGNKSDLRH---LRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred HHHHHHHhC-CCCCeEEEEEECccccc---cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 999998875 34689999999999976 366788888899988889999999999999999999998865
No 66
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.95 E-value=1.3e-26 Score=167.93 Aligned_cols=141 Identities=35% Similarity=0.570 Sum_probs=124.9
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| .+.+.||+|.++....+.+ ++..+.+++||++|++++..++..+++++|++|+|||++++++|+.+..
T Consensus 20 sli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 98 (170)
T cd04116 20 SLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSN 98 (170)
T ss_pred HHHHHHHcCCCCcCcCCceeeEEEEEEEEE-CCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHH
Confidence 566666 5567889998888888888 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC---CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHH
Q psy38 78 WMMEAKRHIE---PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 78 ~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
|+..+..... ....|+++|+||.|+.. +.+..+++.+++++++. +++++||++|.|+.++|.++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 99 WKKEFIYYADVKEPESFPFVVLGNKNDIPE----RQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred HHHHHHHhcccccCCCCcEEEEEECccccc----cccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 9999887653 24689999999999864 56788889999998885 89999999999999999999875
No 67
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.95 E-value=2.4e-26 Score=164.74 Aligned_cols=142 Identities=34% Similarity=0.478 Sum_probs=123.2
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+++| ...|.||++. .+...+.+ ++..+.+.+|||+|++++..++..++++++++++|||++++.+|+++.
T Consensus 15 Tsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~ 92 (162)
T cd04138 15 SALTIQLIQNHFVDEYDPTIED-SYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIH 92 (162)
T ss_pred HHHHHHHHhCCCcCCcCCcchh-eEEEEEEE-CCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence 3677776 5678899874 44566677 888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
.|+..+.........|+++|+||.|+.. +.+...++.+++...+++++++||++|.|++++|.++++.+
T Consensus 93 ~~~~~i~~~~~~~~~piivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 93 TYREQIKRVKDSDDVPMVLVGNKCDLAA----RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccccc----ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 9999998876556789999999999965 45677788888888899999999999999999999998754
No 68
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.95 E-value=3.4e-26 Score=165.70 Aligned_cols=144 Identities=49% Similarity=0.824 Sum_probs=128.4
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||+|.++....+.+ ++..+.+.+||++|++++..+...+++++|++++|||++++++|+.+..
T Consensus 19 sLl~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~ 97 (168)
T cd01866 19 CLLLQFTDKRFQPVHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTS 97 (168)
T ss_pred HHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 567777 4567889999998888888 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
|+..+.... ....|+++|+||.|+.. .+.++.+++..++...++.++++||+++.|++++|.++++.+++
T Consensus 98 ~~~~~~~~~-~~~~pvivv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 98 WLEDARQHS-NSNMTIMLIGNKCDLES---RREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred HHHHHHHhC-CCCCcEEEEEECccccc---ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999998764 34689999999999975 35678888989999999999999999999999999999998764
No 69
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.94 E-value=3.7e-26 Score=164.13 Aligned_cols=141 Identities=33% Similarity=0.583 Sum_probs=124.5
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecC--CcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhh
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRD--GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~--~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 74 (193)
+||+++| .+.+.||++.++....+.+ + +..+.+++|||+|+++|..++..+++++|++++|||++++++|+.
T Consensus 14 Tsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~ 92 (162)
T cd04106 14 SSMIQRFVKGIFTKDYKKTIGVDFLEKQIFL-RQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEA 92 (162)
T ss_pred HHHHHHHhcCCCCCCCCCcEEEEEEEEEEEE-cCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHH
Confidence 3677777 5578999999998888887 6 778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 75 ~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
+..|+..+.... ...|+++|+||.|+.. ...+..+++..+++..+++++++||++|.|++++|.+|...
T Consensus 93 l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 93 IESWKEKVEAEC--GDIPMVLVQTKIDLLD---QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred HHHHHHHHHHhC--CCCCEEEEEEChhccc---ccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 999999987653 3588999999999966 35678888889999999999999999999999999999753
No 70
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.94 E-value=3.5e-26 Score=164.69 Aligned_cols=144 Identities=35% Similarity=0.494 Sum_probs=125.1
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+++| ...+.||++ +.+...+.+ ++..+.+++|||+|++++..++..+++++|++++|||++++++|+.+.
T Consensus 14 Tsli~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 91 (164)
T smart00173 14 SALTIQFVQGHFVDDYDPTIE-DSYRKQIEI-DGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIK 91 (164)
T ss_pred HHHHHHHHhCcCCcccCCchh-hhEEEEEEE-CCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHH
Confidence 3667776 567888886 555667777 888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
.|+..+.........|+++||||+|+.. .+.+..+++..++...+++++++||++|.|++++|+++++.+.
T Consensus 92 ~~~~~i~~~~~~~~~pii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 92 KFREQILRVKDRDDVPIVLVGNKCDLES---ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccccc---cceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 9999988776555789999999999976 3557778888899888999999999999999999999998764
No 71
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.94 E-value=4.3e-26 Score=164.05 Aligned_cols=142 Identities=32% Similarity=0.504 Sum_probs=123.6
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++ +.....+.+ ++..+.+++|||+|++++..++..+++++|++++|||++++.+|+.+..
T Consensus 17 sl~~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~ 94 (164)
T cd04145 17 ALTIQFIQSYFVTDYDPTIE-DSYTKQCEI-DGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDK 94 (164)
T ss_pred HHHHHHHhCCCCcccCCCcc-ceEEEEEEE-CCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHH
Confidence 566776 667889987 445566677 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
|+..+.......+.|+++|+||+|+.. .+.+..+++.++++..+++++++||++|.|++++|+++++.+
T Consensus 95 ~~~~~~~~~~~~~~piiiv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 95 FHTQILRVKDRDEFPMILVGNKADLEH---QRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred HHHHHHHHhCCCCCCEEEEeeCccccc---cceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 999998765556789999999999976 355777788889988889999999999999999999998754
No 72
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.94 E-value=2.7e-26 Score=166.85 Aligned_cols=146 Identities=29% Similarity=0.400 Sum_probs=123.5
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+++| ...|.||++. .+...+.+ ++..+.+++|||+|++.|..++..+++++|++|+|||+++++||+.+.
T Consensus 12 Tsli~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~ 89 (174)
T smart00174 12 TCLLISYTTNAFPEDYVPTVFE-NYSADVEV-DGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVK 89 (174)
T ss_pred HHHHHHHHhCCCCCCCCCcEEe-eeeEEEEE-CCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHH
Confidence 3667776 5678899864 44556677 888999999999999999999999999999999999999999999995
Q ss_pred -HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHH
Q psy38 77 -VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAV 145 (193)
Q Consensus 77 -~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i 145 (193)
.|+..+.... ...|+++||||.|+..+. ....++.+++.++++..+. .+++|||++|.||+++|..+
T Consensus 90 ~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l 167 (174)
T smart00174 90 EKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEA 167 (174)
T ss_pred HHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHH
Confidence 5999888753 368999999999996521 1234788899999999986 99999999999999999999
Q ss_pred HHHHHH
Q psy38 146 TQEIYN 151 (193)
Q Consensus 146 ~~~i~~ 151 (193)
++.++.
T Consensus 168 ~~~~~~ 173 (174)
T smart00174 168 IRAALN 173 (174)
T ss_pred HHHhcC
Confidence 988753
No 73
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=5.1e-26 Score=164.17 Aligned_cols=141 Identities=43% Similarity=0.704 Sum_probs=124.7
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.+|.+.++..+.+.+ ++..+.+.+||++|++.+..++..+++++|++++|||++++.+|+.+..
T Consensus 18 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~ 96 (165)
T cd01864 18 CVVQRFKSGTFSERQGNTIGVDFTMKTLEI-EGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPH 96 (165)
T ss_pred HHHHHHhhCCCcccCCCccceEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHH
Confidence 566666 5678899988888888888 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
|+..+.... ....|+++|+||+|+.+ .+.+..+++.++++..+. .++++||++|.|++++|.++++.
T Consensus 97 ~~~~i~~~~-~~~~p~ivv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 97 WIEEVEKYG-ASNVVLLLIGNKCDLEE---QREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred HHHHHHHhC-CCCCcEEEEEECccccc---ccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 999998753 45688999999999976 356788888899998876 78999999999999999999875
No 74
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.94 E-value=4e-26 Score=163.89 Aligned_cols=138 Identities=22% Similarity=0.353 Sum_probs=114.4
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||++|| .+.+.|+.+ ++ ...+.+ +|..+.+++|||+|++. ..+++++|++++|||+++++||+++.
T Consensus 14 Tsli~~~~~~~f~~~~~~~~~-~~-~~~i~~-~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~ 85 (158)
T cd04103 14 SALVHRYLTGSYVQLESPEGG-RF-KKEVLV-DGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVY 85 (158)
T ss_pred HHHHHHHHhCCCCCCCCCCcc-ce-EEEEEE-CCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHH
Confidence 3667776 445666643 45 467888 88899999999999975 35778999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC-CCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-DILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
.|+..+.........|+++||||.|+... ..+.++.+++.+++++. ++.|++|||++|.||+++|..+++.
T Consensus 86 ~~~~~i~~~~~~~~~piilvgnK~Dl~~~-~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 86 NLYHQLSSYRNISEIPLILVGTQDAISES-NPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred HHHHHHHHhcCCCCCCEEEEeeHHHhhhc-CCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 99999988765567899999999998531 14678899999999876 4899999999999999999999864
No 75
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.94 E-value=7.5e-26 Score=162.54 Aligned_cols=141 Identities=48% Similarity=0.776 Sum_probs=126.6
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||++++ ...+.||++.++....+.+ ++..+.+++||++|+++|..++..+++++|++|+|||++++++|..+..
T Consensus 15 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 93 (161)
T cd04113 15 CLLHRFVENKFKEDSQHTIGVEFGSKIIRV-GGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPT 93 (161)
T ss_pred HHHHHHHhCCCCCCCCCceeeeEEEEEEEE-CCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHH
Confidence 567776 5677889998999888888 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
|+..+.... ..+.|+++|+||.|+.. .+.+..+++..++...++.++++||+++.|++++|.++++.
T Consensus 94 ~~~~~~~~~-~~~~~iivv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 94 WLSDARALA-SPNIVVILVGNKSDLAD---QREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred HHHHHHHhC-CCCCeEEEEEEchhcch---hccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 999887664 45689999999999976 46688888999999999999999999999999999999875
No 76
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.94 E-value=7e-26 Score=163.55 Aligned_cols=141 Identities=23% Similarity=0.305 Sum_probs=120.7
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+++| ...|.||++..+ ...+.. ++..+.+++|||+|++++..++..++++++++|+|||++++++|+.+.
T Consensus 15 Tsli~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~ 92 (165)
T cd04140 15 SSLVLRFVKGTFRESYIPTIEDTY-RQVISC-SKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELK 92 (165)
T ss_pred HHHHHHHHhCCCCCCcCCcchheE-EEEEEE-CCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHH
Confidence 3677777 467889987444 555666 777899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC--CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38 77 VWMMEAKRHIE--PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 77 ~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
.|+..+..... ....|+++|+||.|+.. .+.+..+++..++...++.|++|||++|.|++++|++|+.
T Consensus 93 ~~~~~i~~~~~~~~~~~piilv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 93 PIYELICEIKGNNIEKIPIMLVGNKCDESH---KREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred HHHHHHHHHhcCCCCCCCEEEEEECccccc---cCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHh
Confidence 99988877543 25689999999999965 3567788888899888899999999999999999999975
No 77
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.94 E-value=1.1e-25 Score=162.06 Aligned_cols=136 Identities=30% Similarity=0.509 Sum_probs=120.4
Q ss_pred cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCC
Q psy38 9 IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEP 88 (193)
Q Consensus 9 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 88 (193)
..+|.||+|.++....+.+.++..+.+.+|||+|++.+..++..+++++|++++|||++++++|+.+..|+..+....
T Consensus 28 ~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-- 105 (164)
T cd04101 28 PKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS-- 105 (164)
T ss_pred CccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--
Confidence 568999999999888888845788999999999999999999999999999999999999999999999999988764
Q ss_pred CCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 89 HRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 89 ~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
...|+++|+||.|+.+ ...+....+..++...+++++++||+++.|++++|..+++.+
T Consensus 106 ~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 106 KHMPGVLVGNKMDLAD---KAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred CCCCEEEEEECccccc---ccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 4578999999999965 355777777778888889999999999999999999999864
No 78
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.94 E-value=8.2e-26 Score=172.95 Aligned_cols=143 Identities=22% Similarity=0.334 Sum_probs=123.4
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||++|| .+.|.||++ ++..+.+.+ ++..+.++||||+|++.|..++..++.++|++|+|||+++++||+++.
T Consensus 14 TSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i-~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~ 91 (247)
T cd04143 14 TAIVSRFLGGRFEEQYTPTIE-DFHRKLYSI-RGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVC 91 (247)
T ss_pred HHHHHHHHcCCCCCCCCCChh-HhEEEEEEE-CCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHH
Confidence 4677777 557899997 888888888 899999999999999999988899999999999999999999999999
Q ss_pred HHHHHHHHhc--------CCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh-CCCcEEEecCCCCcCHHHHHHHHHH
Q psy38 77 VWMMEAKRHI--------EPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 77 ~~~~~i~~~~--------~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
.|+.++.... .....|+++|+||+|+.. .+.+..+++.+++.. .++.++++||++|.||+++|.+|+.
T Consensus 92 ~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~---~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~ 168 (247)
T cd04143 92 RLREQILETKSCLKNKTKENVKIPMVICGNKADRDF---PREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFS 168 (247)
T ss_pred HHHHHHHHhhcccccccccCCCCcEEEEEECccchh---ccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 9999997652 224689999999999975 356777888777764 4678999999999999999999998
Q ss_pred HH
Q psy38 148 EI 149 (193)
Q Consensus 148 ~i 149 (193)
.+
T Consensus 169 ~~ 170 (247)
T cd04143 169 LA 170 (247)
T ss_pred Hh
Confidence 65
No 79
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.94 E-value=1.3e-25 Score=166.82 Aligned_cols=147 Identities=19% Similarity=0.224 Sum_probs=120.7
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccc--------hhhhccCccEEEEEEeCCC
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSI--------TKSYYRNSVGALLVYDITS 68 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~--------~~~~~~~~d~~i~v~d~~~ 68 (193)
+||++|| ...|.||++.++....+.+ +|..+.+++|||+|.+.+... ....++++|++|+|||+++
T Consensus 14 TsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~ 92 (198)
T cd04142 14 TAIVRQFLAQEFPEEYIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICS 92 (198)
T ss_pred HHHHHHHHcCCCCcccCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCC
Confidence 3677777 5678999987877777778 888999999999997654321 2345789999999999999
Q ss_pred hhHHhhHHHHHHHHHHhcC--CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH-hCCCcEEEecCCCCcCHHHHHHHH
Q psy38 69 RASFEHIPVWMMEAKRHIE--PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS-QNDILHFETSSRSGFQVENAFTAV 145 (193)
Q Consensus 69 ~~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~e~f~~i 145 (193)
++||+.+..|+..+..... ....|+++||||.|+.. .+.+..+++..++. ..+++|++|||++|.||+++|..+
T Consensus 93 ~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i 169 (198)
T cd04142 93 PDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR---HRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKEL 169 (198)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc---cccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHH
Confidence 9999999999999987652 45689999999999966 35567777777764 468999999999999999999999
Q ss_pred HHHHHHH
Q psy38 146 TQEIYNR 152 (193)
Q Consensus 146 ~~~i~~~ 152 (193)
++.++.+
T Consensus 170 ~~~~~~~ 176 (198)
T cd04142 170 LISATTR 176 (198)
T ss_pred HHHhhcc
Confidence 9988753
No 80
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.94 E-value=1.8e-25 Score=160.82 Aligned_cols=142 Identities=23% Similarity=0.413 Sum_probs=121.2
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||++|| .+.+.||.+.++....+.+ ++..+.+.+|||+|++.|..++..+++++|++|+|||++++.+|+++.
T Consensus 14 Tsli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 92 (161)
T cd04124 14 SKLVERFLMDGYEPQQLSTYALTLYKHNAKF-EGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLS 92 (161)
T ss_pred HHHHHHHHhCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHH
Confidence 3677776 4566778887888888888 888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
.|+..+.... ...|+++|+||.|+.. . ...+...++...+++++++||++|.|++++|+.+++.+++.
T Consensus 93 ~~~~~i~~~~--~~~p~ivv~nK~Dl~~----~--~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 93 KWYEELREYR--PEIPCIVVANKIDLDP----S--VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred HHHHHHHHhC--CCCcEEEEEECccCch----h--HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 9999997753 3579999999999843 1 23455677777889999999999999999999999988763
No 81
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.94 E-value=2.2e-25 Score=161.38 Aligned_cols=144 Identities=31% Similarity=0.486 Sum_probs=125.3
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++ +.+.+.+.+ ++..+.+++|||+|+++|..+++.++++++++++|||++++++|+.+..
T Consensus 16 sli~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~ 93 (168)
T cd04177 16 ALTVQFVQNVFIESYDPTIE-DSYRKQVEI-DGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGE 93 (168)
T ss_pred HHHHHHHhCCCCcccCCcch-heEEEEEEE-CCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHH
Confidence 566666 567889987 455677778 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
|...+.......+.|+++++||.|+.. .+.+..+++..+++..+ ++++++||+++.|++++|.+++.+++-
T Consensus 94 ~~~~i~~~~~~~~~piiiv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~~ 165 (168)
T cd04177 94 LREQVLRIKDSDNVPMVLVGNKADLED---DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQIIC 165 (168)
T ss_pred HHHHHHHhhCCCCCCEEEEEEChhccc---cCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 999998765556789999999999976 46677788888888887 799999999999999999999987653
No 82
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.94 E-value=2.5e-25 Score=161.90 Aligned_cols=141 Identities=29% Similarity=0.435 Sum_probs=120.4
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP- 76 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~- 76 (193)
||+++| ..+|.||+ .+++...+.+ ++..+.+++|||+|++++..++..+++++|++|+|||++++++|+.+.
T Consensus 15 sl~~~~~~~~~~~~~~~t~-~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~ 92 (173)
T cd04130 15 SLIVSYTTNGYPTEYVPTA-FDNFSVVVLV-DGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISE 92 (173)
T ss_pred HHHHHHHhCCCCCCCCCce-eeeeeEEEEE-CCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHH
Confidence 556555 67888997 4777777888 888899999999999999999999999999999999999999999985
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT 146 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~ 146 (193)
.|+..+.... ...|+++||||.|+.... ..+.+..+++..+++..+. .|+++||++|.||+++|+.++
T Consensus 93 ~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 93 KWIPEIRKHN--PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHHHHHhhC--CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 6998887642 358999999999996432 2467888999999999887 999999999999999999886
Q ss_pred H
Q psy38 147 Q 147 (193)
Q Consensus 147 ~ 147 (193)
-
T Consensus 171 ~ 171 (173)
T cd04130 171 L 171 (173)
T ss_pred h
Confidence 4
No 83
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.93 E-value=5.7e-25 Score=158.10 Aligned_cols=144 Identities=49% Similarity=0.795 Sum_probs=127.9
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++.++....+.+ ++..+.+.+||++|++.+..++..+++++|++|+|||++++.+++.+..
T Consensus 15 tli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~ 93 (164)
T smart00175 15 SLLSRFTDGKFSEQYKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKN 93 (164)
T ss_pred HHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHH
Confidence 566776 5677789998888888888 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
|+..+..+.. ...|+++|+||.|+.. ...+..+.+..++...+++++++||+++.|++++|.++.+.+.+
T Consensus 94 ~l~~~~~~~~-~~~pivvv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 94 WLKELREYAD-PNVVIMLVGNKSDLED---QRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred HHHHHHHhCC-CCCeEEEEEEchhccc---ccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 9999988753 4789999999999865 35677888888998889999999999999999999999998754
No 84
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.93 E-value=5.1e-25 Score=158.13 Aligned_cols=141 Identities=40% Similarity=0.679 Sum_probs=125.8
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++.++....+.+ ++..+.+++||++|++.+..++..+++++|++++|||++++.+|+.+..
T Consensus 15 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 93 (161)
T cd01863 15 SLLLRFTDDTFDPDLAATIGVDFKVKTLTV-DGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLET 93 (161)
T ss_pred HHHHHHHcCCCCcccCCcccceEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHH
Confidence 566666 4568999998888888888 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
|+..+..+......|+++|+||.|+.. ..+..++...++...+++++++||++|.|++++|.++++.
T Consensus 94 ~~~~i~~~~~~~~~~~~iv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 94 WLNELETYSTNNDIVKMLVGNKIDKEN----REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred HHHHHHHhCCCCCCcEEEEEECCcccc----cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 999999887677899999999999974 4567788889999999999999999999999999999875
No 85
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.93 E-value=5.2e-25 Score=166.27 Aligned_cols=148 Identities=28% Similarity=0.317 Sum_probs=125.9
Q ss_pred eeeeeec-----c-CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhcc-CccEEEEEEeCCChhHHhh
Q psy38 2 VTLLYLY-----I-QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYR-NSVGALLVYDITSRASFEH 74 (193)
Q Consensus 2 ~sll~r~-----~-~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~ 74 (193)
+||+++| . ..|.||++.++..+.+.+ ++..+.+.+|||+|++. .....++. ++|++++|||++++.+|+.
T Consensus 14 TsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iilV~d~td~~S~~~ 90 (221)
T cd04148 14 SSLASQFTSGEYDDHAYDASGDDDTYERTVSV-DGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVVVYSVTDRSSFER 90 (221)
T ss_pred HHHHHHHhcCCcCccCcCCCccccceEEEEEE-CCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEEEEECCCHHHHHH
Confidence 3677777 2 678888877888888888 88899999999999982 23455666 9999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154 (193)
Q Consensus 75 ~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~ 154 (193)
+..|+..+.........|+++|+||.|+.. .+.+..+++..++...+++|+++||+++.||+++|+++++.+.....
T Consensus 91 ~~~~~~~l~~~~~~~~~piilV~NK~Dl~~---~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~~~~ 167 (221)
T cd04148 91 ASELRIQLRRNRQLEDRPIILVGNKSDLAR---SREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRLRRD 167 (221)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEEChhccc---cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHhhhc
Confidence 999999998865456789999999999976 46788888889998889999999999999999999999999876544
Q ss_pred C
Q psy38 155 S 155 (193)
Q Consensus 155 ~ 155 (193)
.
T Consensus 168 ~ 168 (221)
T cd04148 168 S 168 (221)
T ss_pred c
Confidence 4
No 86
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.93 E-value=5.1e-25 Score=158.07 Aligned_cols=141 Identities=35% Similarity=0.627 Sum_probs=125.2
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||++++ ...+.|+.+.++....+.+ ++..+.+++||++|++++..++..+++++|++|+|||++++++|+.+..
T Consensus 15 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~ 93 (161)
T cd01861 15 SIITRFMYDTFDNQYQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDK 93 (161)
T ss_pred HHHHHHHcCCCCccCCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHH
Confidence 567776 4577899999999999998 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
|+..+..... ...|+++|+||+|+.+ .+.+..++...++...+++++++||+++.|++++|.++.+.
T Consensus 94 ~~~~~~~~~~-~~~~iilv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 94 WIDDVRDERG-NDVIIVLVGNKTDLSD---KRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred HHHHHHHhCC-CCCEEEEEEEChhccc---cCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 9999877543 3689999999999965 46678888888888888999999999999999999999874
No 87
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.93 E-value=8.6e-25 Score=157.19 Aligned_cols=142 Identities=39% Similarity=0.728 Sum_probs=126.6
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||++++ ...+.||.|.++....+.+ ++..+.+.+||++|++++...+..+++++|++|+|||++++++|..+..
T Consensus 16 sli~~l~~~~~~~~~~~t~~~~~~~~~v~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 94 (163)
T cd01860 16 SLVLRFVKNEFSENQESTIGAAFLTQTVNL-DDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKS 94 (163)
T ss_pred HHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHH
Confidence 566666 4458899998888899999 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
|+..+..... ...|+++++||.|+.. .+.++.++...++...++.++++||++|.|+.++|.++++.+
T Consensus 95 ~~~~~~~~~~-~~~~iivv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 95 WVKELQRNAS-PNIIIALVGNKADLES---KRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred HHHHHHHhCC-CCCeEEEEEECccccc---cCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 9999988753 5789999999999875 356778888889998899999999999999999999999875
No 88
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.93 E-value=5e-25 Score=158.98 Aligned_cols=143 Identities=32% Similarity=0.459 Sum_probs=119.8
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcccc-ccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERF-RSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
||+++| ..+|.||++.. ....+.+ ++..+.+++||++|++.+ ......+++++|++|+|||+++++||+.+.
T Consensus 14 sli~~~~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 91 (165)
T cd04146 14 ALVVRFLTKRFIGEYDPNLESL-YSRQVTI-DGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEIS 91 (165)
T ss_pred HHHHHHHhCccccccCCChHHh-ceEEEEE-CCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHH
Confidence 566665 56788998644 4556677 888999999999999853 445678899999999999999999999999
Q ss_pred HHHHHHHHhcC-CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCc-CHHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIE-PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGF-QVENAFTAVTQEIY 150 (193)
Q Consensus 77 ~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~e~f~~i~~~i~ 150 (193)
.|+..+..... ....|+++||||+|+.. .+.+..+++..+++..+++|+++||+++. ||+++|.++++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 92 QLKQLIREIKKRDREIPVILVGNKADLLH---YRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECCchHH---hCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 99998887653 44689999999999965 36678888999999999999999999995 99999999998654
No 89
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=5.3e-25 Score=159.72 Aligned_cols=142 Identities=19% Similarity=0.159 Sum_probs=120.3
Q ss_pred eeeeeec-----c-CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH
Q psy38 2 VTLLYLY-----I-QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI 75 (193)
Q Consensus 2 ~sll~r~-----~-~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 75 (193)
+||++|| . .+|.||++.++....+.+ +|..+.+.+||++|++.+..++..+++++|++++|||++++.+|+.+
T Consensus 18 Tsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~ 96 (169)
T cd01892 18 SALLRAFLGRSFSLNAYSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYC 96 (169)
T ss_pred HHHHHHHhCCCCCcccCCCccCcceEEEEEEE-CCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHH
Confidence 4678887 4 678999998888888888 88889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
..|+..+.. ....|+++|+||.|+.+. +.+...+..++++..++ .++++||+++.|++++|..+++.++
T Consensus 97 ~~~~~~~~~---~~~~p~iiv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 97 AEVYKKYFM---LGEIPCLFVAAKADLDEQ---QQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred HHHHHHhcc---CCCCeEEEEEEccccccc---ccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence 999886542 236899999999999652 33334456677888887 5799999999999999999999876
No 90
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.93 E-value=2.2e-24 Score=156.24 Aligned_cols=147 Identities=36% Similarity=0.622 Sum_probs=127.4
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.+|++.++..+.+.+ ++..+.+++||++|++.+..++..+++++|++|++||++++.+|+.+..
T Consensus 15 sl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~ 93 (172)
T cd01862 15 SLMNQYVNKKFSNQYKATIGADFLTKEVTV-DDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDS 93 (172)
T ss_pred HHHHHHhcCCCCcCcCCccceEEEEEEEEE-CCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHH
Confidence 567776 5567789888898888888 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC---CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 78 WMMEAKRHIE---PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 78 ~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
|...+..... ..+.|+++|+||+|+.. .+.+..++...+++..+ ++++++||++|.|++++|.++++.+++..
T Consensus 94 ~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~ 170 (172)
T cd01862 94 WRDEFLIQASPSDPENFPFVVLGNKIDLEE---KRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALEQE 170 (172)
T ss_pred HHHHHHHhcCccCCCCceEEEEEECccccc---ccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 9988877654 23689999999999975 35567777778888887 79999999999999999999999988763
No 91
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.93 E-value=1.2e-24 Score=158.15 Aligned_cols=143 Identities=27% Similarity=0.367 Sum_probs=120.9
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP- 76 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~- 76 (193)
||+++| .+.|.||++ +.+...+.+ ++..+.+.+|||+|++.|..++..+++++|++++|||++++.+|+.+.
T Consensus 15 sl~~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~ 92 (174)
T cd04135 15 CLLMSYANDAFPEEYVPTVF-DHYAVSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKE 92 (174)
T ss_pred HHHHHHHhCCCCCCCCCcee-eeeEEEEEE-CCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHH
Confidence 566666 567889986 555667778 888899999999999999999999999999999999999999999995
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCC---------CCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGV---------PREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT 146 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~ 146 (193)
.|+..+... ....|+++||||.|+..+.. .+.++.+++..+++..++ ++++|||++|.||+++|+.++
T Consensus 93 ~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~ 170 (174)
T cd04135 93 EWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAI 170 (174)
T ss_pred HHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHH
Confidence 588887765 45689999999999854311 236778889999999886 799999999999999999999
Q ss_pred HHH
Q psy38 147 QEI 149 (193)
Q Consensus 147 ~~i 149 (193)
+.+
T Consensus 171 ~~~ 173 (174)
T cd04135 171 LAI 173 (174)
T ss_pred HHh
Confidence 876
No 92
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.92 E-value=3.6e-25 Score=161.48 Aligned_cols=138 Identities=23% Similarity=0.348 Sum_probs=106.5
Q ss_pred eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
+||++|| ...+.||+|.++. .+.. ..+.+++|||+|++++..++..+++++|++|+|||++++++++++..
T Consensus 27 TsL~~~~~~~~~~~~~~t~~~~~~--~~~~---~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~ 101 (175)
T smart00177 27 TTILYKLKLGESVTTIPTIGFNVE--TVTY---KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEARE 101 (175)
T ss_pred HHHHHHHhcCCCCCcCCccccceE--EEEE---CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHH
Confidence 3567777 3457899987664 3334 35889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHH-----HhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFA-----SQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
|+..+.........|++||+||.|+.+. .+.++..+.. ....+.++++||++|.||+++|+||.+.+
T Consensus 102 ~l~~~~~~~~~~~~piilv~NK~Dl~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 102 ELHRMLNEDELRDAVILVFANKQDLPDA-----MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred HHHHHhhCHhhcCCcEEEEEeCcCcccC-----CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 8888875433346899999999999652 2222222221 12234577899999999999999998764
No 93
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.92 E-value=7.9e-25 Score=158.66 Aligned_cols=136 Identities=21% Similarity=0.330 Sum_probs=107.9
Q ss_pred eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
+||+++| ...+.||+|.++. .+.. ..+.+++|||+|+++++.+++.+++++|++|+|||++++.+|.++..
T Consensus 23 Tsli~~l~~~~~~~~~~t~g~~~~--~~~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~ 97 (168)
T cd04149 23 TTILYKLKLGQSVTTIPTVGFNVE--TVTY---KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQ 97 (168)
T ss_pred HHHHHHHccCCCccccCCcccceE--EEEE---CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHH
Confidence 3667776 3457899986654 3333 45889999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh-----CCCcEEEecCCCCcCHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-----NDILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
|+.++.......+.|++||+||.|+.. .+..+++.++... ..+.++++||++|.|++++|.||.+
T Consensus 98 ~~~~~~~~~~~~~~piilv~NK~Dl~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 98 ELHRIINDREMRDALLLVFANKQDLPD-----AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred HHHHHhcCHhhcCCcEEEEEECcCCcc-----CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 888777543334689999999999954 2455666665432 2347899999999999999999975
No 94
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.92 E-value=1.5e-24 Score=159.09 Aligned_cols=141 Identities=23% Similarity=0.337 Sum_probs=107.3
Q ss_pred eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
+||++|| ...+.||+|.++. .+.. ..+.+++||++|+++++.++..+|+++|++|+|||+++++++.++..
T Consensus 31 Tsl~~~l~~~~~~~~~pt~g~~~~--~~~~---~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~ 105 (181)
T PLN00223 31 TTILYKLKLGEIVTTIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105 (181)
T ss_pred HHHHHHHccCCCccccCCcceeEE--EEEE---CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHH
Confidence 3566776 3357799986553 3343 45899999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC-----CCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-----DILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
|+..+.........|++||+||.|+... ...++..+...-. .+.++++||++|+||.++|+||++.+..+
T Consensus 106 ~l~~~l~~~~~~~~piilv~NK~Dl~~~-----~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 106 ELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred HHHHHhcCHhhCCCCEEEEEECCCCCCC-----CCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhhc
Confidence 8887765433346899999999999652 2333332222111 12466899999999999999999887653
No 95
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.92 E-value=8e-24 Score=151.63 Aligned_cols=142 Identities=37% Similarity=0.672 Sum_probs=123.6
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.+|++.++....+.+ ++..+.+.+||++|++.+..+++.+++++|++++|||++++++++.+..
T Consensus 15 tli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 93 (162)
T cd04123 15 SLVLRYVENKFNEKHESTTQASFFQKTVNI-GGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKK 93 (162)
T ss_pred HHHHHHHhCCCCCCcCCccceeEEEEEEEE-CCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 566666 4466778877787788887 7888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
|+..+...... ..|+++|+||+|+.. .+.+..++..++++..++.++++|++++.|++++|.++.+.+
T Consensus 94 ~~~~i~~~~~~-~~piiiv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 94 WIKELKQMRGN-NISLVIVGNKIDLER---QRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred HHHHHHHhCCC-CCeEEEEEECccccc---ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 99999887543 789999999999975 456777888888888899999999999999999999998865
No 96
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.92 E-value=2.1e-24 Score=156.50 Aligned_cols=141 Identities=19% Similarity=0.323 Sum_probs=113.7
Q ss_pred eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
+||++|| ...+.||+|.++. .+.. ..+.+++|||+|++++..++..+++++|++|+|||++++++|.++..
T Consensus 13 Tsl~~~l~~~~~~~~~~T~~~~~~--~~~~---~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~ 87 (169)
T cd04158 13 TTILFKLKQDEFMQPIPTIGFNVE--TVEY---KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHS 87 (169)
T ss_pred HHHHHHHhcCCCCCcCCcCceeEE--EEEE---CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHH
Confidence 3677777 3358899886664 3343 45889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC------CcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND------ILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
|+..+.........|+++|+||.|+.. .++.+++.+++...+ +.+++|||++|.||+++|.||++.+..
T Consensus 88 ~~~~~~~~~~~~~~piilv~NK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 88 ELAKLLTEKELRDALLLIFANKQDVAG-----ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred HHHHHhcChhhCCCCEEEEEeCcCccc-----CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence 999998654445689999999999954 356677766664322 367899999999999999999987665
Q ss_pred H
Q psy38 152 R 152 (193)
Q Consensus 152 ~ 152 (193)
.
T Consensus 163 ~ 163 (169)
T cd04158 163 A 163 (169)
T ss_pred c
Confidence 3
No 97
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.92 E-value=4.3e-25 Score=158.67 Aligned_cols=136 Identities=23% Similarity=0.365 Sum_probs=104.3
Q ss_pred eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
+||++|| ...|.||+|.++. .+.. ..+.+.+||++|++++..++..+++++|++|+|||++++.+|+.+..
T Consensus 14 Tsli~~l~~~~~~~~~pt~g~~~~--~~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~ 88 (159)
T cd04150 14 TTILYKLKLGEIVTTIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEARE 88 (159)
T ss_pred HHHHHHHhcCCCcccCCCCCcceE--EEEE---CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHH
Confidence 3566776 3357899986653 3333 45889999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHH-HHHHH----HhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAE-AKAFA----SQNDILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~-~~~~~----~~~~~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
|+..+.........|++|++||.|+... ....+ ...+. ....+.++++||++|.||+++|+||.+
T Consensus 89 ~~~~~~~~~~~~~~piilv~NK~Dl~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 89 ELQRMLNEDELRDAVLLVFANKQDLPNA-----MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHhcHHhcCCCEEEEEECCCCCCC-----CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 8888765433346899999999999542 22222 22222 123446789999999999999999864
No 98
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.92 E-value=4.6e-24 Score=156.69 Aligned_cols=151 Identities=21% Similarity=0.269 Sum_probs=119.8
Q ss_pred eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
+||+++| ...+.||+|.++....+.+.++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+..
T Consensus 17 Tsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~ 96 (183)
T cd04152 17 TTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKT 96 (183)
T ss_pred HHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 4677777 224568888777766666534567999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh------CCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ------NDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
|+..+.........|+++|+||+|+.. .+..++...+... .+++++++||++|.|++++|.+|++.+.+
T Consensus 97 ~~~~i~~~~~~~~~p~iiv~NK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 97 ELHKITRFSENQGVPVLVLANKQDLPN-----ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred HHHHHHhhhhcCCCcEEEEEECcCccc-----cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHH
Confidence 998888765555789999999999854 2344444444321 12468899999999999999999999987
Q ss_pred HhcCCC
Q psy38 152 RVQSGD 157 (193)
Q Consensus 152 ~~~~~~ 157 (193)
..+..+
T Consensus 172 ~~~~~~ 177 (183)
T cd04152 172 RRKMLR 177 (183)
T ss_pred HHhhhh
Confidence 766554
No 99
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.92 E-value=5.1e-25 Score=161.64 Aligned_cols=141 Identities=21% Similarity=0.332 Sum_probs=107.3
Q ss_pred eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38 3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW 78 (193)
Q Consensus 3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 78 (193)
||++|| ...+.||+|.++. .+.. ..+.+++|||+|+++++.++..+++++|++|+|||++++++|.++..|
T Consensus 32 sli~~~~~~~~~~~~~T~~~~~~--~~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~ 106 (182)
T PTZ00133 32 TILYKLKLGEVVTTIPTIGFNVE--TVEY---KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREE 106 (182)
T ss_pred HHHHHHhcCCccccCCccccceE--EEEE---CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHH
Confidence 566666 2347789886553 3444 458899999999999999999999999999999999999999999888
Q ss_pred HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHH-----HhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFA-----SQNDILHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
+..+.........|++||+||.|+.+. +..++..... ....+.++++||++|.|++++|.+|.+.+.+++
T Consensus 107 l~~~~~~~~~~~~piilv~NK~Dl~~~-----~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 107 LERMLSEDELRDAVLLVFANKQDLPNA-----MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKSM 181 (182)
T ss_pred HHHHHhCHhhcCCCEEEEEeCCCCCCC-----CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHHhc
Confidence 887765422346899999999998542 2222222211 122245779999999999999999999887765
No 100
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.92 E-value=9.7e-24 Score=156.83 Aligned_cols=146 Identities=23% Similarity=0.259 Sum_probs=121.5
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+++| ...|.||++ ++....+.+ ++..+.+.+||++|+..|..++..++.++|++|+|||++++.+|+.+.
T Consensus 13 Tsll~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~ 90 (198)
T cd04147 13 TALIQRFLYDTFEPKYRRTVE-EMHRKEYEV-GGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVE 90 (198)
T ss_pred HHHHHHHHhCCCCccCCCchh-hheeEEEEE-CCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHH
Confidence 3567776 556788885 677778888 888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH-hCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS-QNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
.|+..+.........|+++|+||.|+... ...+..+...+... ..+++++++||++|.|++++|.++++.+..
T Consensus 91 ~~~~~i~~~~~~~~~piilv~NK~Dl~~~--~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 164 (198)
T cd04147 91 RLREEILEVKEDKFVPIVVVGNKADSLEE--ERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQANL 164 (198)
T ss_pred HHHHHHHHhcCCCCCcEEEEEEccccccc--cccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhhc
Confidence 99999998766667999999999998542 24455555555443 456789999999999999999999997753
No 101
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.91 E-value=1.9e-23 Score=151.05 Aligned_cols=142 Identities=41% Similarity=0.692 Sum_probs=122.8
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||++++ .+.+.||++.++....+.+ ++..+.+.+||++|++.+...+..+++.+|++++|||++++.+|+.+..
T Consensus 22 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 100 (169)
T cd04114 22 CLVRRFTQGLFPPGQGATIGVDFMIKTVEI-KGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE 100 (169)
T ss_pred HHHHHHHhCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHH
Confidence 455555 5578899988898888888 8888999999999999999988999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
|+..+.... ....|+++|+||.|+.. .+.+.......+......+++++||++|.|++++|.++++.+
T Consensus 101 ~~~~l~~~~-~~~~~~i~v~NK~D~~~---~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 101 WLREIEQYA-NNKVITILVGNKIDLAE---RREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred HHHHHHHhC-CCCCeEEEEEECccccc---ccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 999887764 34688889999999975 356777777788877778999999999999999999999865
No 102
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.91 E-value=1.8e-23 Score=154.07 Aligned_cols=148 Identities=28% Similarity=0.398 Sum_probs=120.9
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP- 76 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~- 76 (193)
||+++| .+++.||++..+. ..+.+ ++..+.+.+||++|++.+......++.++++++++||++++++|+.+.
T Consensus 16 tLl~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~ 93 (187)
T cd04129 16 SLLSVFTLGEFPEEYHPTVFENYV-TDCRV-DGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRT 93 (187)
T ss_pred HHHHHHHhCCCCcccCCcccceEE-EEEEE-CCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHH
Confidence 455665 5677888865544 45666 788899999999999998888888899999999999999999999996
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC-------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSG-------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
.|+..+.... ...|+++||||.|+..+. ..+.+..+++..+++..+. +|++|||++|.||+++|.++++.
T Consensus 94 ~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 171 (187)
T cd04129 94 KWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRA 171 (187)
T ss_pred HHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHH
Confidence 5999888654 358999999999985421 1345677888899999885 89999999999999999999998
Q ss_pred HHHHhc
Q psy38 149 IYNRVQ 154 (193)
Q Consensus 149 i~~~~~ 154 (193)
++...+
T Consensus 172 ~~~~~~ 177 (187)
T cd04129 172 ALLVRK 177 (187)
T ss_pred HhcccC
Confidence 866443
No 103
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.91 E-value=1.2e-24 Score=157.04 Aligned_cols=136 Identities=20% Similarity=0.233 Sum_probs=110.0
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||++|| ...|.||+|.++ +.+ ++..+.+++||++|+++++.++..+++++|++|+|||++++.+|..+.
T Consensus 13 Tsli~~~~~~~~~~~~~pt~g~~~----~~i-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~ 87 (164)
T cd04162 13 TSLLHSLSSERSLESVVPTTGFNS----VAI-PTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLAR 87 (164)
T ss_pred HHHHHHHhcCCCcccccccCCcce----EEE-eeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHH
Confidence 3667777 567889998543 334 556789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCH----HHHHHHHHhCCCcEEEecCCC------CcCHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE----AEAKAFASQNDILHFETSSRS------GFQVENAFTAVT 146 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i~e~f~~i~ 146 (193)
.|+..+.... .+.|+++|+||.|+... +.+.. ..+..++++.++.+++|||++ ++||+++|..++
T Consensus 88 ~~l~~~~~~~--~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 88 QELHQLLQHP--PDLPLVVLANKQDLPAA---RSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred HHHHHHHhCC--CCCcEEEEEeCcCCcCC---CCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence 9988887543 56899999999999663 22221 234566777788999999888 999999999886
Q ss_pred H
Q psy38 147 Q 147 (193)
Q Consensus 147 ~ 147 (193)
.
T Consensus 163 ~ 163 (164)
T cd04162 163 N 163 (164)
T ss_pred c
Confidence 4
No 104
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.91 E-value=2.8e-23 Score=151.07 Aligned_cols=143 Identities=29% Similarity=0.435 Sum_probs=117.8
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP- 76 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~- 76 (193)
||+++| .+.|.||++..+. ..+.+ ++..+.+.+|||+|++.|..++..++.++|++++|||++++++|+.+.
T Consensus 16 sl~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~ 93 (175)
T cd01870 16 CLLIVFSKDQFPEVYVPTVFENYV-ADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE 93 (175)
T ss_pred HHHHHHhcCCCCCCCCCccccceE-EEEEE-CCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHH
Confidence 566676 5678899975554 45677 888899999999999999998889999999999999999999999985
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT 146 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~ 146 (193)
.|+..+.... ...|+++|+||.|+.... ....+...++.+++...+. ++++|||++|.|++++|.+++
T Consensus 94 ~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~ 171 (175)
T cd01870 94 KWTPEVKHFC--PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMAT 171 (175)
T ss_pred HHHHHHHhhC--CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHH
Confidence 5888877642 368999999999985421 1234567888889988775 899999999999999999998
Q ss_pred HHH
Q psy38 147 QEI 149 (193)
Q Consensus 147 ~~i 149 (193)
+.+
T Consensus 172 ~~~ 174 (175)
T cd01870 172 RAA 174 (175)
T ss_pred HHh
Confidence 764
No 105
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.91 E-value=3e-23 Score=148.99 Aligned_cols=143 Identities=34% Similarity=0.472 Sum_probs=122.8
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||++++ ...+.||++ +...+...+ ++..+.+.+||++|++.+..++..+++.++++++|||++++.+|..+..
T Consensus 15 sl~~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 92 (164)
T cd04139 15 ALTLQFMYDEFVEDYEPTKA-DSYRKKVVL-DGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAE 92 (164)
T ss_pred HHHHHHHhCCCccccCCcch-hhEEEEEEE-CCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHH
Confidence 556665 567888886 445566666 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
|+..+.........|+++|+||+|+.. .......+...++...+++++++||+++.|++++|.++++.+.
T Consensus 93 ~~~~~~~~~~~~~~piiiv~NK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 93 FREQILRVKDDDNVPLLLVGNKCDLED---KRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred HHHHHHHhcCCCCCCEEEEEEcccccc---ccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 999999875556789999999999865 2446677777888888899999999999999999999998765
No 106
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.90 E-value=2e-22 Score=147.38 Aligned_cols=146 Identities=30% Similarity=0.429 Sum_probs=124.0
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++..+ ...+.+ ++..+.+++||++|++++..++..++..+++++++||+++..+|+.+..
T Consensus 16 tl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 93 (180)
T cd04137 16 SLTVQFVEGHFVESYYPTIENTF-SKIIRY-KGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKV 93 (180)
T ss_pred HHHHHHHhCCCccccCcchhhhE-EEEEEE-CCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHH
Confidence 566776 456788886444 566677 7788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
|+..+.........|+++|+||+|+.. .+.+..++...++...+++++++||+++.|+.++|.++.+.+....
T Consensus 94 ~~~~~~~~~~~~~~p~ilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 166 (180)
T cd04137 94 IYDKILDMLGKESVPIVLVGNKSDLHT---QRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEKVE 166 (180)
T ss_pred HHHHHHHhcCCCCCCEEEEEEchhhhh---cCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 999998876556789999999999965 3556667777888888899999999999999999999999887654
No 107
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.90 E-value=1.2e-22 Score=145.17 Aligned_cols=142 Identities=33% Similarity=0.521 Sum_probs=123.9
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||++++ ...+.||.+ +.....+.+ ++..+.+++||++|++.+..++..+++++|++++|||+++++++.++..
T Consensus 14 sli~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 91 (160)
T cd00876 14 AITIQFVKGTFVEEYDPTIE-DSYRKTIVV-DGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKG 91 (160)
T ss_pred HHHHHHHhCCCCcCcCCChh-HeEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence 566665 577888886 666777777 7778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
|+..+.........|+++|+||.|+.. ...+..+++..++...+++++++||+++.|++++|.+|++.+
T Consensus 92 ~~~~~~~~~~~~~~p~ivv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 92 YREQILRVKDDEDIPIVLVGNKCDLEN---ERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred HHHHHHHhcCCCCCcEEEEEECCcccc---cceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhhC
Confidence 999998876545789999999999976 356778889899998889999999999999999999998753
No 108
>KOG4252|consensus
Probab=99.90 E-value=4.3e-25 Score=155.55 Aligned_cols=147 Identities=29% Similarity=0.520 Sum_probs=136.3
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
|+|+|| .++|..|||+||..+.+.+ ++..+++.+||++|+++|......||+++.+.++||+.+|+.||+.+..
T Consensus 35 smiqryCkgifTkdykktIgvdflerqi~v-~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~ 113 (246)
T KOG4252|consen 35 SMIQRYCKGIFTKDYKKTIGVDFLERQIKV-LIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLE 113 (246)
T ss_pred HHHHHHhccccccccccccchhhhhHHHHh-hHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHH
Confidence 567777 8899999999999999999 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcC
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQS 155 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~ 155 (193)
|.+.+..... .+|.++|-||+||.+ ...+...++..+++...+.++.+|++...||.++|..+++...+..++
T Consensus 114 w~~kv~~e~~--~IPtV~vqNKIDlve---ds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 114 WYNKVQKETE--RIPTVFVQNKIDLVE---DSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHhc--cCCeEEeeccchhhH---hhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999998754 589999999999988 477889999999999999999999999999999999999999887765
No 109
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.90 E-value=9.5e-23 Score=151.50 Aligned_cols=131 Identities=24% Similarity=0.382 Sum_probs=107.1
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEec----CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMR----DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~----~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 72 (193)
+||++|| .++|.||+|.++..+.+.+. ++..+.+++|||+|+++|..++..+|+++|++|+|||+++++||
T Consensus 14 TSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf 93 (202)
T cd04102 14 SSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSS 93 (202)
T ss_pred HHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHH
Confidence 4677777 56789999988888888772 25789999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhc------------------CCCCCeEEEEeeCCCCCCCCCCCccCHH----HHHHHHHhCCCcEEEe
Q psy38 73 EHIPVWMMEAKRHI------------------EPHRPVFALVGCKLDLLQSGVPREVSEA----EAKAFASQNDILHFET 130 (193)
Q Consensus 73 ~~~~~~~~~i~~~~------------------~~~~~piilv~nK~Dl~~~~~~~~v~~~----~~~~~~~~~~~~~~~~ 130 (193)
+++..|+.++.... .....|++|||||.|+.+ .+.+... ....++.+.+++.++.
T Consensus 94 ~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~---~r~~~~~~~~~~~~~ia~~~~~~~i~~ 170 (202)
T cd04102 94 QNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP---EKESSGNLVLTARGFVAEQGNAEEINL 170 (202)
T ss_pred HHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh---hcccchHHHhhHhhhHHHhcCCceEEE
Confidence 99999999998742 124689999999999965 2334433 3446788899988887
Q ss_pred cCCCC
Q psy38 131 SSRSG 135 (193)
Q Consensus 131 Sa~~~ 135 (193)
+..+.
T Consensus 171 ~c~~~ 175 (202)
T cd04102 171 NCTNG 175 (202)
T ss_pred ecCCc
Confidence 76643
No 110
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.89 E-value=3.4e-22 Score=150.36 Aligned_cols=142 Identities=26% Similarity=0.495 Sum_probs=122.3
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||++|| ...|.||+|.++....+.. ++..+.+.+|||+|++++..++..++.+++++|+|||+++..+|..+..
T Consensus 24 tLi~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 102 (215)
T PTZ00132 24 TFVKRHLTGEFEKKYIPTLGVEVHPLKFYT-NCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPN 102 (215)
T ss_pred HHHHHHHhCCCCCCCCCccceEEEEEEEEE-CCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHH
Confidence 566665 5789999999999888887 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
|+..+.... ...|+++||||.|+.. +.+..+ ...++...++.++++||++|.|++++|.+|++.++..
T Consensus 103 ~~~~i~~~~--~~~~i~lv~nK~Dl~~----~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 103 WHRDIVRVC--ENIPIVLVGNKVDVKD----RQVKAR-QITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTND 170 (215)
T ss_pred HHHHHHHhC--CCCCEEEEEECccCcc----ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhhc
Confidence 999998764 4588989999999864 223333 3467777889999999999999999999999988764
No 111
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.89 E-value=1.1e-22 Score=148.06 Aligned_cols=135 Identities=20% Similarity=0.296 Sum_probs=107.7
Q ss_pred eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38 3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW 78 (193)
Q Consensus 3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 78 (193)
||+++| ...+.||+| +....+.+ + .+.+.+||++|++.++.++..+++++|++++|||++++.+|..+..|
T Consensus 29 sL~~~l~~~~~~~~~~t~g--~~~~~~~~-~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 103 (173)
T cd04154 29 TILKKLLGEDIDTISPTLG--FQIKTLEY-E--GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRE 103 (173)
T ss_pred HHHHHHccCCCCCcCCccc--cceEEEEE-C--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHH
Confidence 566666 556788887 44445566 5 37899999999999998999999999999999999999999999889
Q ss_pred HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH-----hCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38 79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS-----QNDILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
+..+.........|+++|+||+|+.+. ...++..++.. ..+++++++||++|.|++++|.+++.
T Consensus 104 ~~~~~~~~~~~~~p~iiv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 104 LKELLQEERLAGATLLILANKQDLPGA-----LSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred HHHHHhChhhcCCCEEEEEECcccccC-----CCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 888876433456899999999999652 24444544442 24568999999999999999999874
No 112
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.89 E-value=3.6e-22 Score=142.03 Aligned_cols=139 Identities=48% Similarity=0.786 Sum_probs=122.2
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||++++ ...+.||.+.++....+.. ++..+.+.+||++|+..+...+..+++++|++|+|||+++++++..+..
T Consensus 15 tl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~ 93 (159)
T cd00154 15 SLLLRFVDGKFDENYKSTIGVDFKSKTIEI-DGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDK 93 (159)
T ss_pred HHHHHHHhCcCCCccCCceeeeeEEEEEEE-CCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHH
Confidence 566666 5557889999999998888 7888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVT 146 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~ 146 (193)
|+..+..... ...|+++++||+|+.. ......++..+++...+++++++||+++.|++++|.+|+
T Consensus 94 ~~~~~~~~~~-~~~p~ivv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 94 WLKELKEYAP-ENIPIILVGNKIDLED---QRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred HHHHHHHhCC-CCCcEEEEEEcccccc---cccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 9999988752 4688999999999963 255677888889988889999999999999999999986
No 113
>KOG0070|consensus
Probab=99.89 E-value=2.2e-22 Score=143.01 Aligned_cols=145 Identities=22% Similarity=0.315 Sum_probs=122.2
Q ss_pred eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
++||+++ .-...||+| |....+.+ +++.+++||.+|+++++.+|+.|+++++++|||.|.+|++.+.++..
T Consensus 31 TTILykLk~~E~vttvPTiG--fnVE~v~y---kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~ 105 (181)
T KOG0070|consen 31 TTILYKLKLGEIVTTVPTIG--FNVETVEY---KNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKE 105 (181)
T ss_pred eeeeEeeccCCcccCCCccc--cceeEEEE---cceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHH
Confidence 5788888 334499998 77777777 46999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
-+..+.........|+++++||.|++++.+...++......-.......+..|+|.+|.|+.|.++|+...+..
T Consensus 106 eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 106 ELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred HHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence 88888877666789999999999998875555555555555555566788899999999999999999987754
No 114
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.88 E-value=9e-22 Score=142.41 Aligned_cols=141 Identities=29% Similarity=0.428 Sum_probs=117.0
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP- 76 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~- 76 (193)
||+++| ...+.||+. +.....+.. ++..+.+++||++|++.+......+++.+|++++|||++++.+|....
T Consensus 15 sli~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 92 (171)
T cd00157 15 CLLISYTTGKFPTEYVPTVF-DNYSATVTV-DGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKT 92 (171)
T ss_pred HHHHHHHhCCCCCCCCCcee-eeeEEEEEE-CCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHH
Confidence 577777 356788875 555666677 888999999999999998888889999999999999999999999874
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCC--------CccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP--------REVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
.|+..+.... ...|+++|+||+|+...... ..+..+++.+++...++ +++++||++|.|++++|.++++
T Consensus 93 ~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 93 KWIPEIRHYC--PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHHHHHHhhC--CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 5888777654 26899999999999653211 24567888889888887 9999999999999999999875
No 115
>KOG0073|consensus
Probab=99.88 E-value=7.3e-22 Score=137.24 Aligned_cols=146 Identities=20% Similarity=0.284 Sum_probs=119.0
Q ss_pred eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
++|+++| .+...||.| |.-+++.+ . .+++.+||++|+...++.|+.||+++|++|+|+|++|+..|++...
T Consensus 30 Tti~~kl~~~~~~~i~pt~g--f~Iktl~~-~--~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~ 104 (185)
T KOG0073|consen 30 TTIVKKLLGEDTDTISPTLG--FQIKTLEY-K--GYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQ 104 (185)
T ss_pred hhHHHHhcCCCccccCCccc--eeeEEEEe-c--ceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHH
Confidence 3567777 667888887 55555555 3 4899999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHH-HHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAE-AKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
.+..+.....-...|+++++||.|+........+.... ..+++++..++.+.||+.+|+++.+.|+|+...+..+
T Consensus 105 ~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 105 ELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHHH
Confidence 77777765445567888999999998654334443332 3356677889999999999999999999999999874
No 116
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.88 E-value=5.4e-23 Score=147.56 Aligned_cols=135 Identities=19% Similarity=0.301 Sum_probs=102.2
Q ss_pred eeeeec------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 3 TLLYLY------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 3 sll~r~------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
||+++| ...+.||+|..+. .+.. ..+.+++|||+|++++..++..+++++|++|+|+|++++.+|..+.
T Consensus 14 sl~~~l~~~~~~~~~~~~t~g~~~~--~~~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~ 88 (162)
T cd04157 14 TIINQLKPENAQSQIIVPTVGFNVE--SFEK---GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVK 88 (162)
T ss_pred HHHHHHcccCCCcceecCccccceE--EEEE---CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHH
Confidence 566666 3467899885432 2333 4588999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHhcC--CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH-----hCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38 77 VWMMEAKRHIE--PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS-----QNDILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 77 ~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
.|+..+..... ....|+++|+||+|+... ....+..+... ...+.++++||++|.|++++|++|.+
T Consensus 89 ~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 89 DELELLLNHPDIKHRRVPILFFANKMDLPDA-----LTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred HHHHHHHcCcccccCCCCEEEEEeCccccCC-----CCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 88888866421 246899999999998652 12222222111 12346899999999999999999875
No 117
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.88 E-value=7.1e-23 Score=146.75 Aligned_cols=135 Identities=25% Similarity=0.362 Sum_probs=100.5
Q ss_pred eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38 3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW 78 (193)
Q Consensus 3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 78 (193)
||++++ ...+.||+|.++. .+.. ..+.+++|||+|++.+..+++.+++.+|++|+|+|++++.++.....|
T Consensus 14 sl~~~l~~~~~~~~~~t~~~~~~--~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~ 88 (158)
T cd04151 14 TILYRLQLGEVVTTIPTIGFNVE--TVTY---KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEE 88 (158)
T ss_pred HHHHHHccCCCcCcCCccCcCeE--EEEE---CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHH
Confidence 566666 3356788876543 3333 458899999999999999999999999999999999999888887777
Q ss_pred HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHH-HHH----HhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38 79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAK-AFA----SQNDILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~-~~~----~~~~~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
+..+.+.......|+++|+||+|+.+. ....+.. .+. ...+.+++++||++|.|++++|+++++
T Consensus 89 ~~~~~~~~~~~~~piiiv~nK~Dl~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 89 LHAMLEEEELKGAVLLVFANKQDMPGA-----LSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHhchhhcCCcEEEEEeCCCCCCC-----CCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 666554333346899999999998652 1222221 121 112357999999999999999999975
No 118
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.88 E-value=1.3e-22 Score=146.84 Aligned_cols=140 Identities=16% Similarity=0.214 Sum_probs=106.2
Q ss_pred eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38 3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW 78 (193)
Q Consensus 3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 78 (193)
||+++| ...+.||+|.. ...+.. ..+.+++||++|++.++.++..+++++|++|+|||++++.+|+.+..|
T Consensus 14 sl~~~l~~~~~~~~~~t~g~~--~~~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~ 88 (167)
T cd04161 14 TLVSALQGEIPKKVAPTVGFT--PTKLRL---DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEI 88 (167)
T ss_pred HHHHHHhCCCCccccCcccce--EEEEEE---CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHH
Confidence 455555 56789999854 345555 348899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCC-ccCHHHHHHHHHhCC--CcEEEecCCCC------cCHHHHHHHHHH
Q psy38 79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPR-EVSEAEAKAFASQND--ILHFETSSRSG------FQVENAFTAVTQ 147 (193)
Q Consensus 79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~-~v~~~~~~~~~~~~~--~~~~~~Sa~~~------~~i~e~f~~i~~ 147 (193)
+..+.........|+++|+||.|+....... .+.......++.+.+ +.+++|||++| .|+.+.|+||..
T Consensus 89 l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 89 LRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred HHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 9999876444578999999999996631111 111111223343333 46778999998 899999999975
No 119
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.88 E-value=1.4e-22 Score=147.59 Aligned_cols=135 Identities=22% Similarity=0.382 Sum_probs=104.2
Q ss_pred eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38 3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW 78 (193)
Q Consensus 3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 78 (193)
||++++ ...+.||+|.++. .+.+ + .+.+.+||++|++.+...+..+++++|++|+|+|+++++++..+..|
T Consensus 30 sl~~~l~~~~~~~~~~t~~~~~~--~~~~-~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~ 104 (174)
T cd04153 30 TILYQFLLGEVVHTSPTIGSNVE--EIVY-K--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEE 104 (174)
T ss_pred HHHHHHccCCCCCcCCccccceE--EEEE-C--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHH
Confidence 566666 3346788876543 3444 3 58899999999999999999999999999999999999999998888
Q ss_pred HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHH-HHHHH----HhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38 79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAE-AKAFA----SQNDILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~-~~~~~----~~~~~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
+..+.........|+++++||.|+... +..++ ...+. ...+++++++||++|.||+++|.+|.+
T Consensus 105 l~~~~~~~~~~~~p~viv~NK~Dl~~~-----~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 105 LYKMLAHEDLRKAVLLVLANKQDLKGA-----MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred HHHHHhchhhcCCCEEEEEECCCCCCC-----CCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 888876544456899999999998652 23332 22222 234567999999999999999999975
No 120
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.87 E-value=1.9e-22 Score=144.54 Aligned_cols=137 Identities=24% Similarity=0.390 Sum_probs=105.1
Q ss_pred eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
+||+++| ...+.||+|.++ ..+.. +..+.+.+||++|++.+..++..++.++|++|+|+|++++.++..+..
T Consensus 13 Tsl~~~~~~~~~~~~~~t~~~~~--~~~~~--~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~ 88 (160)
T cd04156 13 STLLYKLKHAELVTTIPTVGFNV--EMLQL--EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQK 88 (160)
T ss_pred HHHHHHHhcCCcccccCccCcce--EEEEe--CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHH
Confidence 3677777 234578887544 34444 245889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHH------HHHHhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAK------AFASQNDILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~------~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
|+..+.......+.|+++|+||+|+... ....+.. .++...++++++|||++|.|++++|.+|++
T Consensus 89 ~~~~~~~~~~~~~~piilv~nK~Dl~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 89 ELKHILKNEHIKGVPVVLLANKQDLPGA-----LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHhchhhcCCCEEEEEECcccccC-----cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 9888876543457899999999998542 2222222 222224457999999999999999999864
No 121
>PLN00023 GTP-binding protein; Provisional
Probab=99.87 E-value=5.1e-21 Score=149.42 Aligned_cols=123 Identities=20% Similarity=0.359 Sum_probs=102.7
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecC-------------CcEEEEEEeeCCCccccccchhhhccCccEEEEE
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRD-------------GARIKLQLWDTAGQERFRSITKSYYRNSVGALLV 63 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~-------------~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v 63 (193)
+||+++| ...|.||+|.++..+.+.+ + ++.+.++||||+|+++|+.++..||++++++|+|
T Consensus 35 TSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~-~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILV 113 (334)
T PLN00023 35 SSLVHLIVKGSSIARPPQTIGCTVGVKHITY-GSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFV 113 (334)
T ss_pred HHHHHHHhcCCcccccCCceeeeEEEEEEEE-CCcccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEE
Confidence 4677887 5678999999998887777 4 3578999999999999999999999999999999
Q ss_pred EeCCChhHHhhHHHHHHHHHHhcC-----------CCCCeEEEEeeCCCCCCCCCCCc---cCHHHHHHHHHhCCC
Q psy38 64 YDITSRASFEHIPVWMMEAKRHIE-----------PHRPVFALVGCKLDLLQSGVPRE---VSEAEAKAFASQNDI 125 (193)
Q Consensus 64 ~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~~~~~~---v~~~~~~~~~~~~~~ 125 (193)
||++++.+|+++..|+..+..... ...+|++|||||+||......+. +..++++++|+++++
T Consensus 114 yDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 114 HDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHHHHHHHHHcCC
Confidence 999999999999999999987642 12589999999999965211122 468999999999874
No 122
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.86 E-value=9.7e-22 Score=143.37 Aligned_cols=137 Identities=28% Similarity=0.423 Sum_probs=109.7
Q ss_pred eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38 3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW 78 (193)
Q Consensus 3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 78 (193)
||++++ ...+.||+| +....+.+ ++ +.+.+||.+|+..++..|+.|+.++|++|||+|.++.+.+.+....
T Consensus 29 tll~~l~~~~~~~~~pT~g--~~~~~i~~-~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~ 103 (175)
T PF00025_consen 29 TLLNRLKNGEISETIPTIG--FNIEEIKY-KG--YSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEE 103 (175)
T ss_dssp HHHHHHHSSSEEEEEEESS--EEEEEEEE-TT--EEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHH
T ss_pred HHHHHhhhccccccCcccc--cccceeee-Cc--EEEEEEeccccccccccceeeccccceeEEEEecccceeecccccc
Confidence 456665 345788987 44455666 44 7889999999999999999999999999999999999999999888
Q ss_pred HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH------hCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS------QNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
+..+.........|+++++||.|+.+. .+.++..+... ...+.++.|||.+|.|+.|.|+||.++|
T Consensus 104 L~~ll~~~~~~~~piLIl~NK~D~~~~-----~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 104 LKELLNDPELKDIPILILANKQDLPDA-----MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHTSGGGTTSEEEEEEESTTSTTS-----STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred hhhhcchhhcccceEEEEeccccccCc-----chhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 888887655567999999999998653 34444443322 2345788999999999999999999875
No 123
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.86 E-value=4.3e-21 Score=138.48 Aligned_cols=128 Identities=25% Similarity=0.359 Sum_probs=103.0
Q ss_pred CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCC
Q psy38 10 QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPH 89 (193)
Q Consensus 10 ~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 89 (193)
..+.||++.++. .+.+ + ...+.+|||+|++.+..++..+++++|++++|+|+++++++..+..|+..+.......
T Consensus 32 ~~~~~t~~~~~~--~~~~-~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~ 106 (167)
T cd04160 32 SKITPTVGLNIG--TIEV-G--NARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALE 106 (167)
T ss_pred cccCCccccceE--EEEE-C--CEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhc
Confidence 356788876664 3455 4 4789999999999999999999999999999999999999999989998887754445
Q ss_pred CCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh-------CCCcEEEecCCCCcCHHHHHHHHHH
Q psy38 90 RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-------NDILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 90 ~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
..|+++|+||+|+.. ....++...+... .+++++++||++|.|++++|.||.+
T Consensus 107 ~~p~ilv~NK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 107 GVPLLILANKQDLPD-----ALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred CCCEEEEEEcccccc-----CCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 789999999999855 2344444444332 2458999999999999999999975
No 124
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.86 E-value=8.9e-21 Score=137.00 Aligned_cols=142 Identities=18% Similarity=0.206 Sum_probs=105.7
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||++|| ..++.++. .++ .....+ ++..+.+.+|||+|++.+...+..++..+|++++|||++++.+|+.+.
T Consensus 14 Tsl~~~l~~~~~~~~~~~~~-~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~ 90 (166)
T cd01893 14 SSLIMSLVSEEFPENVPRVL-PEI-TIPADV-TPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIR 90 (166)
T ss_pred HHHHHHHHhCcCCccCCCcc-cce-Eeeeee-cCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHH
Confidence 3677777 33333333 232 344455 778899999999999988887888899999999999999999999985
Q ss_pred -HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc--CHHHHHHHHHhC-C-CcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 77 -VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV--SEAEAKAFASQN-D-ILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 77 -~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v--~~~~~~~~~~~~-~-~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
.|+..+.... ...|+++|+||+|+.+. ... ..++...++... + ..+++|||+++.|++++|..+.+.+++
T Consensus 91 ~~~~~~i~~~~--~~~pviiv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 91 TKWLPLIRRLG--VKVPIILVGNKSDLRDG---SSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred HHHHHHHHHhC--CCCCEEEEEEchhcccc---cchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhcC
Confidence 5888777653 36899999999999653 211 123333344443 2 389999999999999999999987754
No 125
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.86 E-value=6.3e-21 Score=140.62 Aligned_cols=137 Identities=24% Similarity=0.273 Sum_probs=108.9
Q ss_pred eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
+||++++ ...|.||.+... ..+.+ ++ +.+.+||++|+..+..++..++++++++++|+|+++.++|.....
T Consensus 33 StLi~~l~~~~~~~~~~T~~~~~--~~i~~-~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~ 107 (190)
T cd00879 33 TTLLHMLKDDRLAQHVPTLHPTS--EELTI-GN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKE 107 (190)
T ss_pred HHHHHHHhcCCCcccCCccCcce--EEEEE-CC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHH
Confidence 3567776 346778886543 44555 54 678999999999998889999999999999999999999998888
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh----------------CCCcEEEecCCCCcCHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ----------------NDILHFETSSRSGFQVENA 141 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~e~ 141 (193)
|+..+.......+.|+++|+||.|+.. .+..++..++... ..+.+++|||++|.|++++
T Consensus 108 ~~~~i~~~~~~~~~pvivv~NK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~ 182 (190)
T cd00879 108 ELDSLLSDEELANVPFLILGNKIDLPG-----AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEA 182 (190)
T ss_pred HHHHHHcCccccCCCEEEEEeCCCCCC-----CcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHH
Confidence 999888654445689999999999853 3556666665542 2246899999999999999
Q ss_pred HHHHHHH
Q psy38 142 FTAVTQE 148 (193)
Q Consensus 142 f~~i~~~ 148 (193)
|+|+++.
T Consensus 183 ~~~l~~~ 189 (190)
T cd00879 183 FRWLSQY 189 (190)
T ss_pred HHHHHhh
Confidence 9999875
No 126
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.85 E-value=3.3e-21 Score=137.89 Aligned_cols=135 Identities=22% Similarity=0.329 Sum_probs=106.6
Q ss_pred eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38 3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW 78 (193)
Q Consensus 3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 78 (193)
||++++ ...+.||++... ..+.+ + .+.+.+||++|++.+...+..+++++|++++|||+++++++..+..|
T Consensus 14 sli~~~~~~~~~~~~~t~~~~~--~~~~~-~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~ 88 (158)
T cd00878 14 TILYKLKLGEVVTTIPTIGFNV--ETVEY-K--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEE 88 (158)
T ss_pred HHHHHHhcCCCCCCCCCcCcce--EEEEE-C--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHH
Confidence 566676 456788887544 33444 3 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH-----hCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38 79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS-----QNDILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
+..+.........|+++|+||+|+... ...++..+... ...++++++||++|.|++++|.+|..
T Consensus 89 ~~~~~~~~~~~~~piiiv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 89 LHKLLNEEELKGVPLLIFANKQDLPGA-----LSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHhCcccCCCcEEEEeeccCCccc-----cCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 988887655567899999999998652 12333333322 23468999999999999999999875
No 127
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.83 E-value=5e-20 Score=135.36 Aligned_cols=137 Identities=20% Similarity=0.229 Sum_probs=105.1
Q ss_pred eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
+||++++ ...+.||.+... ..+.+ + .+.+.+||++|++.++.++..++.++|++|+|+|+++++++.....
T Consensus 31 Tsli~~l~~~~~~~~~~t~~~~~--~~~~~-~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~ 105 (184)
T smart00178 31 TTLLHMLKNDRLAQHQPTQHPTS--EELAI-G--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKR 105 (184)
T ss_pred HHHHHHHhcCCCcccCCccccce--EEEEE-C--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHH
Confidence 3677777 235677876433 33444 4 3789999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh------------CCCcEEEecCCCCcCHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ------------NDILHFETSSRSGFQVENAFTAV 145 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~e~f~~i 145 (193)
|+..+.........|+++|+||.|+.. .++.++..+...- ....+++|||++|.|++++++||
T Consensus 106 ~l~~l~~~~~~~~~piliv~NK~Dl~~-----~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl 180 (184)
T smart00178 106 ELDALLSDEELATVPFLILGNKIDAPY-----AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWL 180 (184)
T ss_pred HHHHHHcChhhcCCCEEEEEeCccccC-----CCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHH
Confidence 888877643345689999999999854 2444444433211 12368999999999999999999
Q ss_pred HHH
Q psy38 146 TQE 148 (193)
Q Consensus 146 ~~~ 148 (193)
...
T Consensus 181 ~~~ 183 (184)
T smart00178 181 SQY 183 (184)
T ss_pred Hhh
Confidence 864
No 128
>KOG0071|consensus
Probab=99.83 E-value=4e-20 Score=125.52 Aligned_cols=143 Identities=22% Similarity=0.363 Sum_probs=117.4
Q ss_pred eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
++||..+ .....||+| |....+++ +++.+.+||.+|+++.+.+|++||.++.++|||.|..+++.+++++.
T Consensus 31 TtiLyKLkl~~~~~~ipTvG--FnvetVty---kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ 105 (180)
T KOG0071|consen 31 TTILYKLKLGQSVTTIPTVG--FNVETVTY---KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARN 105 (180)
T ss_pred eehhhHHhcCCCcccccccc--eeEEEEEe---eeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHH
Confidence 3555555 567789988 77777777 66999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
-+-.+.......+.|+++.+||.|+..+....++......+-++...+.+..+||.+|.|+.|-|.|++..+
T Consensus 106 ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 106 ELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred HHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhc
Confidence 888888776677899999999999987644444444444344555567788999999999999999998743
No 129
>KOG0075|consensus
Probab=99.83 E-value=4.3e-20 Score=126.31 Aligned_cols=137 Identities=21% Similarity=0.308 Sum_probs=110.5
Q ss_pred ccCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcC
Q psy38 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIE 87 (193)
Q Consensus 8 ~~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~ 87 (193)
|.+.-.||+| |..+.+ +...+.+.+||.+|+.+|+.+|+.|++.++++++|.|+++++.+.-.+.-+.++.....
T Consensus 45 ~~edmiptvG--fnmrk~---tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~ 119 (186)
T KOG0075|consen 45 YLEDMIPTVG--FNMRKV---TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPS 119 (186)
T ss_pred chhhhccccc--ceeEEe---ccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchh
Confidence 4677789988 443333 44569999999999999999999999999999999999999988888888888887766
Q ss_pred CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 88 PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 88 ~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
...+|++++|||.|+.++.....+....+..-.....+.+|.+|+++..|++.+.+|++++-
T Consensus 120 l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 120 LTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred hcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHh
Confidence 77899999999999987543333333333333344557899999999999999999999864
No 130
>KOG3883|consensus
Probab=99.83 E-value=8.9e-20 Score=125.58 Aligned_cols=140 Identities=23% Similarity=0.358 Sum_probs=125.2
Q ss_pred cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcccc-ccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcC
Q psy38 9 IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERF-RSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIE 87 (193)
Q Consensus 9 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~ 87 (193)
..++.||+. |++...+..+.|..-.++|+||+|...+ ..+.++|+.-+|++++|||..+++||+.+.-...+|.....
T Consensus 37 ~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~Kd 115 (198)
T KOG3883|consen 37 GTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKD 115 (198)
T ss_pred CCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccc
Confidence 678999996 8998888886777789999999998887 66889999999999999999999999998877777877776
Q ss_pred CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 88 PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 88 ~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
....||++++||.|+.+ ++.+..+-+..+|++..+..++++|.+...+-|.|..+...+...
T Consensus 116 KKEvpiVVLaN~rdr~~---p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl~~p 177 (198)
T KOG3883|consen 116 KKEVPIVVLANKRDRAE---PREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLASRLHQP 177 (198)
T ss_pred cccccEEEEechhhccc---chhcCHHHHHHHHhhhheeEEEEEeccchhhhhHHHHHHHhccCC
Confidence 77899999999999987 688999999999999999999999999999999999988866543
No 131
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.83 E-value=3.3e-20 Score=132.02 Aligned_cols=135 Identities=22% Similarity=0.308 Sum_probs=104.3
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||++++ ..++.||++.++.. +.. ++ +.+.+||++|++.+..++..+++++|++++|+|++++.++.....
T Consensus 14 sl~~~l~~~~~~~~~~~t~~~~~~~--~~~-~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~ 88 (159)
T cd04159 14 TLVNVIAGGQFSEDTIPTVGFNMRK--VTK-GN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKN 88 (159)
T ss_pred HHHHHHccCCCCcCccCCCCcceEE--EEE-CC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence 566666 56788998866653 444 33 889999999999999999999999999999999999999998888
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHH-----HhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFA-----SQNDILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
|+..+.........|+++|+||.|+.+. . ......... ....++++++|++++.|++++|.++++
T Consensus 89 ~~~~~~~~~~~~~~p~iiv~nK~D~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 89 ELHDLLEKPSLEGIPLLVLGNKNDLPGA---L--SVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHcChhhcCCCEEEEEeCccccCC---c--CHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 8888776443456899999999998652 1 112221111 123468899999999999999999975
No 132
>KOG4423|consensus
Probab=99.78 E-value=7.4e-21 Score=134.92 Aligned_cols=153 Identities=26% Similarity=0.450 Sum_probs=128.7
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+|++.|| +..|..|||.+|..+...+.+...+++++||++||+++..+.+.||+.+++.++|||++..-+|+.+.
T Consensus 39 ts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~s 118 (229)
T KOG4423|consen 39 TSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVS 118 (229)
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHH
Confidence 3556666 77899999999999999994444579999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC---CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIE---PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 77 ~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
.|.+++..... ....|+++.+||+|.... ...-......++++++|+ ..+++|++.+.++.|+-..+++.++-+
T Consensus 119 kwkqdldsk~qLpng~Pv~~vllankCd~e~~--a~~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvn 196 (229)
T KOG4423|consen 119 KWKQDLDSKLQLPNGTPVPCVLLANKCDQEKS--AKNEATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVN 196 (229)
T ss_pred HHHHhccCcccCCCCCcchheeccchhccChH--hhhhhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhh
Confidence 99999987654 235789999999998652 111223566688899998 899999999999999999999998887
Q ss_pred hcCC
Q psy38 153 VQSG 156 (193)
Q Consensus 153 ~~~~ 156 (193)
-.+.
T Consensus 197 d~q~ 200 (229)
T KOG4423|consen 197 DEQP 200 (229)
T ss_pred ccCC
Confidence 6443
No 133
>KOG1673|consensus
Probab=99.78 E-value=2.2e-18 Score=119.04 Aligned_cols=148 Identities=26% Similarity=0.469 Sum_probs=124.9
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+-.| +++|.-|.|+.+..+.+.+ .|..+.+.+||.+|++++..+.+..-+++-+++|+||++.+.+++.+.
T Consensus 34 Ts~mvkYV~~~~de~~~q~~GvN~mdkt~~i-~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~ 112 (205)
T KOG1673|consen 34 TSLMVKYVQNEYDEEYTQTLGVNFMDKTVSI-RGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIK 112 (205)
T ss_pred eeeehhhhcchhHHHHHHHhCccceeeEEEe-cceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHH
Confidence 4555566 5778889999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCC--CccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP--REVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
.|+.+..... ...+|| +||+|.|+--+.+. ..--..+++.+|+.++.+.|.||+....||..+|.-+...+.+.
T Consensus 113 ~WY~QAr~~N-ktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFnL 188 (205)
T KOG1673|consen 113 EWYRQARGLN-KTAIPI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFNL 188 (205)
T ss_pred HHHHHHhccC-CccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhCC
Confidence 9999988764 556898 89999997432111 11112457788888999999999999999999999988887764
No 134
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.78 E-value=6.1e-19 Score=127.96 Aligned_cols=135 Identities=21% Similarity=0.299 Sum_probs=100.2
Q ss_pred eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38 3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW 78 (193)
Q Consensus 3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 78 (193)
||++++ ...+.||.|.++ ..+.. ++ ..+.+||++|+..+...+..+++++|++++|+|+++..++.....|
T Consensus 29 tLl~~l~~~~~~~~~~t~g~~~--~~i~~-~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~ 103 (173)
T cd04155 29 TILKQLASEDISHITPTQGFNI--KTVQS-DG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAE 103 (173)
T ss_pred HHHHHHhcCCCcccCCCCCcce--EEEEE-CC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHH
Confidence 456666 334778887443 44555 54 6789999999998888888999999999999999999999988888
Q ss_pred HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC-----CCcEEEecCCCCcCHHHHHHHHHH
Q psy38 79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-----DILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
+..+.........|+++++||.|+... ...++..+..... ..+++++||++|.|++++|+||.+
T Consensus 104 ~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 104 LVELLEEEKLAGVPVLVFANKQDLATA-----APAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred HHHHHhChhhcCCCEEEEEECCCCccC-----CCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 877776544456899999999998542 1122221111111 124789999999999999999975
No 135
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.77 E-value=1.2e-17 Score=125.73 Aligned_cols=152 Identities=33% Similarity=0.457 Sum_probs=118.3
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH-
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI- 75 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~- 75 (193)
+||++|| .+.|.||++..+....+.. .+..+.+.+|||+|+++|+.++..|+.+++++++|||.++..++.++
T Consensus 19 Ttl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~ 97 (219)
T COG1100 19 TTLLNRLVGDEFPEGYPPTIGNLDPAKTIEP-YRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELT 97 (219)
T ss_pred HHHHHHHhcCcCcccCCCceeeeeEEEEEEe-CCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHH
Confidence 4677777 6678899988888888877 66689999999999999999999999999999999999996555554
Q ss_pred HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCC---------CccCHHHHHHHHHhC---CCcEEEecCC--CCcCHHHH
Q psy38 76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP---------REVSEAEAKAFASQN---DILHFETSSR--SGFQVENA 141 (193)
Q Consensus 76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~---------~~v~~~~~~~~~~~~---~~~~~~~Sa~--~~~~i~e~ 141 (193)
..|...+..... ...|+++|+||+|+...... +..........+... ...++++|++ .+.+|.++
T Consensus 98 ~~~~~~l~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~ 176 (219)
T COG1100 98 EEWLEELRELAP-DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNEL 176 (219)
T ss_pred HHHHHHHHHhCC-CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHH
Confidence 779998887653 46899999999999764210 122233222322222 3358999999 99999999
Q ss_pred HHHHHHHHHHHhcC
Q psy38 142 FTAVTQEIYNRVQS 155 (193)
Q Consensus 142 f~~i~~~i~~~~~~ 155 (193)
|.+++..+......
T Consensus 177 ~~~~~~~~~~~~~~ 190 (219)
T COG1100 177 FKELLRKLLEEIEK 190 (219)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999875433
No 136
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.77 E-value=6.1e-18 Score=123.36 Aligned_cols=111 Identities=23% Similarity=0.285 Sum_probs=87.1
Q ss_pred CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCC
Q psy38 29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP 108 (193)
Q Consensus 29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~ 108 (193)
++..+.+.||||+|++++...+..+++++|++|+|||+++..+++....|.... . .+.|+++|+||.|+.+.
T Consensus 63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----~~~~iiiv~NK~Dl~~~--- 134 (179)
T cd01890 63 DGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E----NNLEIIPVINKIDLPSA--- 134 (179)
T ss_pred CCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H----cCCCEEEEEECCCCCcC---
Confidence 456789999999999999999999999999999999999877777666664322 1 24688999999998541
Q ss_pred CccCHHHHHHHHHhCCC---cEEEecCCCCcCHHHHHHHHHHHH
Q psy38 109 REVSEAEAKAFASQNDI---LHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 109 ~~v~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
. ......++++..++ .++++||++|.|++++|.++.+.+
T Consensus 135 ~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 135 D--PERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred C--HHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 1 22233455665565 489999999999999999998754
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.75 E-value=3.8e-18 Score=120.00 Aligned_cols=119 Identities=19% Similarity=0.116 Sum_probs=86.0
Q ss_pred eeeeeec---cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcc-----ccccchhhhccCccEEEEEEeCCChhHHh
Q psy38 2 VTLLYLY---IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQE-----RFRSITKSYYRNSVGALLVYDITSRASFE 73 (193)
Q Consensus 2 ~sll~r~---~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~-----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 73 (193)
+||++|| ...+.+|++.++ .+ .+|||+|+. .+..+.. .++++|++|+|||++++.++.
T Consensus 14 SsL~~~l~~~~~~~~~t~~~~~--------~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~ 79 (142)
T TIGR02528 14 TTLTQALQGEEILYKKTQAVEY--------ND-----GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRF 79 (142)
T ss_pred HHHHHHHcCCccccccceeEEE--------cC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCC
Confidence 4688888 223455554332 11 689999972 3444433 589999999999999999886
Q ss_pred hHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT 146 (193)
Q Consensus 74 ~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~ 146 (193)
. ..|.... ..|+++|+||+|+.+ +....+++.++++..+. +++++||++|.|++++|.++.
T Consensus 80 ~-~~~~~~~-------~~p~ilv~NK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 80 P-PGFASIF-------VKPVIGLVTKIDLAE----ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred C-hhHHHhc-------cCCeEEEEEeeccCC----cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 6 3454321 138889999999864 23456677778877776 899999999999999999874
No 138
>KOG0072|consensus
Probab=99.74 E-value=7.2e-18 Score=115.07 Aligned_cols=144 Identities=21% Similarity=0.278 Sum_probs=109.2
Q ss_pred eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38 3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW 78 (193)
Q Consensus 3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 78 (193)
.|+-|. .....||+| |....+.+ ++..+++||.+|+-+.++.|+.||.+.|++|+|.|.+|++...-....
T Consensus 33 tIlyrlqvgevvttkPtig--fnve~v~y---KNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~e 107 (182)
T KOG0072|consen 33 TILYRLQVGEVVTTKPTIG--FNVETVPY---KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVE 107 (182)
T ss_pred EEEEEcccCcccccCCCCC--cCcccccc---ccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHH
Confidence 455555 456678887 55555554 779999999999999999999999999999999999998877766665
Q ss_pred HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
+-.+...-...+..+++++||.|........++....+.+-.++.-+.+|++||.+|+|+++..+|+.+.+-.
T Consensus 108 l~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 108 LYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred HHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhc
Confidence 5555554444568888999999987642223333333334444455799999999999999999999987643
No 139
>KOG0096|consensus
Probab=99.74 E-value=7.4e-18 Score=120.06 Aligned_cols=137 Identities=26% Similarity=0.520 Sum_probs=119.4
Q ss_pred eccCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhc
Q psy38 7 LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHI 86 (193)
Q Consensus 7 r~~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 86 (193)
.|...|.||+|.+.....+.- +...+++..|||+|++.+..+...||=+..++||+||++.+.++.++.+|..++...+
T Consensus 34 eFe~~y~at~Gv~~~pl~f~t-n~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~ 112 (216)
T KOG0096|consen 34 EFEKTYPATLGVEVHPLLFDT-NRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR 112 (216)
T ss_pred cceecccCcceeEEeeeeeec-ccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh
Confidence 447889999999988888776 5557999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 87 EPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 87 ~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
. ++||++.|||.|... +. .......+-+..++.||+.||+++.|.+.-|.|+.+.+..
T Consensus 113 ~--NiPiv~cGNKvDi~~----r~-~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~G 170 (216)
T KOG0096|consen 113 E--NIPIVLCGNKVDIKA----RK-VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKLTG 170 (216)
T ss_pred c--CCCeeeeccceeccc----cc-cccccceeeecccceeEEeecccccccccchHHHhhhhcC
Confidence 4 489999999999866 22 2334446777889999999999999999999999987654
No 140
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.73 E-value=1.4e-17 Score=120.26 Aligned_cols=112 Identities=16% Similarity=0.138 Sum_probs=80.3
Q ss_pred cEEEEEEeeCCCcccccc---------chhhhccCccEEEEEEeCCChhHH--hhHHHHHHHHHHhcCCCCCeEEEEeeC
Q psy38 31 ARIKLQLWDTAGQERFRS---------ITKSYYRNSVGALLVYDITSRASF--EHIPVWMMEAKRHIEPHRPVFALVGCK 99 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~~---------~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK 99 (193)
..+.+.+|||+|+..... ........+|++++|+|+++..++ +....|+..+.... ...|+++|+||
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK 122 (168)
T cd01897 45 KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNK 122 (168)
T ss_pred CceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEc
Confidence 347899999999843110 001111236899999999987654 55667888887643 35899999999
Q ss_pred CCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 100 LDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 100 ~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
.|+... ..+.. ..+++...+.+++++||++|.|++++|+++.+.+
T Consensus 123 ~Dl~~~---~~~~~--~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 123 IDLLTF---EDLSE--IEEEEELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred cccCch---hhHHH--HHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 999652 22222 4455655677999999999999999999998865
No 141
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.73 E-value=5.2e-17 Score=117.35 Aligned_cols=112 Identities=15% Similarity=0.079 Sum_probs=84.8
Q ss_pred EEEEEeeCCCcc----ccccchhhhc---cCccEEEEEEeCCCh-hHHhhHHHHHHHHHHhcC-CCCCeEEEEeeCCCCC
Q psy38 33 IKLQLWDTAGQE----RFRSITKSYY---RNSVGALLVYDITSR-ASFEHIPVWMMEAKRHIE-PHRPVFALVGCKLDLL 103 (193)
Q Consensus 33 ~~l~l~D~~g~~----~~~~~~~~~~---~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~ 103 (193)
..+.+|||+|.. .+..+...++ ..+|++++|+|++++ ++++.+..|++.+..... ....|+++|+||+|+.
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 127 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL 127 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence 478999999963 2223344444 459999999999998 799999999999887642 2357888999999986
Q ss_pred CCCCCCccCHHHHHHHHHh-CCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 104 QSGVPREVSEAEAKAFASQ-NDILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 104 ~~~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
.. .. ..+....+... .+.+++++||+++.|++++|+++.+.
T Consensus 128 ~~---~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 128 DE---EE-LFELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred Cc---hh-hHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 52 22 23334455555 36789999999999999999999864
No 142
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.73 E-value=1.2e-16 Score=113.19 Aligned_cols=137 Identities=32% Similarity=0.428 Sum_probs=108.8
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh-hHHhhHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR-ASFEHIP 76 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~ 76 (193)
||++++ ...+.|+++.++....+.. ++..+.+.+||++|+.++..++..++++++++++++|+... .++....
T Consensus 16 tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~ 94 (161)
T TIGR00231 16 TLLNRLLGNKFITEYKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEIL 94 (161)
T ss_pred HHHHHHhCCCCcCcCCCCceeeeeEEEEEE-CCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHh
Confidence 455555 5567788888888887887 77778999999999999999999999999999999999887 7777765
Q ss_pred -HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHH
Q psy38 77 -VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAV 145 (193)
Q Consensus 77 -~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i 145 (193)
.|...+...... ..|+++|+||.|+... . +.......+......+++++||+++.|+.++|.+|
T Consensus 95 ~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~---~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 95 EKQTKEIIHHAES-NVPIILVGNKIDLRDA---K-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred HHHHHHHHHhccc-CCcEEEEEEcccCCcc---h-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 677777766533 6899999999999652 2 34444444444456689999999999999999986
No 143
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.72 E-value=4.2e-17 Score=116.95 Aligned_cols=126 Identities=18% Similarity=0.128 Sum_probs=84.1
Q ss_pred CCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcCC
Q psy38 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS---RASFEHIPVWMMEAKRHIEP 88 (193)
Q Consensus 12 ~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~ 88 (193)
+.+++..+.....+.+ ++ ...+.+|||+|+++|......++.++|++++|+|+++ +++++.+. .+...
T Consensus 32 ~~~~~t~~~~~~~~~~-~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~----~~~~~--- 102 (164)
T cd04171 32 KKRGITIDLGFAYLDL-PS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLE----ILELL--- 102 (164)
T ss_pred hccCceEEeeeEEEEe-cC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHH----HHHHh---
Confidence 3444444555555666 41 3578999999999987767778899999999999987 33333322 12211
Q ss_pred CCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh---CCCcEEEecCCCCcCHHHHHHHHHH
Q psy38 89 HRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ---NDILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 89 ~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
...|+++|+||+|+.... ......++..++... .+.+++++||+++.|++++|..+..
T Consensus 103 ~~~~~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 103 GIKRGLVVLTKADLVDED-WLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred CCCcEEEEEECccccCHH-HHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 124888999999996510 001112333344433 4579999999999999999998864
No 144
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.72 E-value=2.6e-16 Score=110.29 Aligned_cols=139 Identities=41% Similarity=0.703 Sum_probs=107.5
Q ss_pred eeeeec------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 3 TLLYLY------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 3 sll~r~------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
||++++ ...+.+|. .++....+.. .+....+.+||++|...+......+++.+|++++|+|++++.++....
T Consensus 11 tl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 88 (157)
T cd00882 11 SLLNRLLGGEFVPEEYETTI-IDFYSKTIEV-DGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVK 88 (157)
T ss_pred HHHHHHHhCCcCCcccccch-hheeeEEEEE-CCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHH
Confidence 456665 24556776 7888888877 677899999999999988888888999999999999999999999988
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHH-HHHHHHhCCCcEEEecCCCCcCHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAE-AKAFASQNDILHFETSSRSGFQVENAFTAVT 146 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~ 146 (193)
.|+............|+++|+||.|+... ....... ...+....+.+++++|+.++.|+.+++.+|.
T Consensus 89 ~~~~~~~~~~~~~~~~~ivv~nk~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 89 EWLLLILINKEGENIPIILVGNKIDLPEE---RVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHHhhccCCCcEEEEEeccccccc---cchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 87444444434557899999999998652 2122211 3344555678999999999999999999986
No 145
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.70 E-value=3e-16 Score=111.87 Aligned_cols=132 Identities=14% Similarity=0.086 Sum_probs=94.9
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccc------hhhhcc--CccEEEEEEeCCCh
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSI------TKSYYR--NSVGALLVYDITSR 69 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~------~~~~~~--~~d~~i~v~d~~~~ 69 (193)
||++++ ...+.|++..+.....+.+ ++ ..+.+|||+|+..+... +..++. ++|++|+|+|.+++
T Consensus 11 sl~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~ 87 (158)
T cd01879 11 TLFNALTGARQKVGNWPGVTVEKKEGRFKL-GG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNL 87 (158)
T ss_pred HHHHHHhcCcccccCCCCcccccceEEEee-CC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcc
Confidence 566666 2223354556666677777 65 57899999999876643 556664 99999999999875
Q ss_pred hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 70 ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 70 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
++. ..|+..+... ..|+++|+||.|+... ..+... ...++...+++++++||.++.|+.++|.++.+.
T Consensus 88 ~~~---~~~~~~~~~~----~~~~iiv~NK~Dl~~~---~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 88 ERN---LYLTLQLLEL----GLPVVVALNMIDEAEK---RGIKID-LDKLSELLGVPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred hhH---HHHHHHHHHc----CCCEEEEEehhhhccc---ccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHH
Confidence 442 3444444432 4789999999999652 223332 346777778999999999999999999999875
No 146
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.69 E-value=8.3e-17 Score=119.17 Aligned_cols=121 Identities=18% Similarity=0.166 Sum_probs=85.8
Q ss_pred CCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe
Q psy38 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV 92 (193)
Q Consensus 13 ~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 92 (193)
.++.|.++......+ ++..+.+.+|||+|+++|...+..+++++|++++|||+++.. +.....|+..+.. ...|
T Consensus 46 e~~~g~t~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p 119 (194)
T cd01891 46 ERERGITILAKNTAV-TYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLK 119 (194)
T ss_pred HHhcccccccceeEE-EECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCC
Confidence 345666677666666 667789999999999999999999999999999999998742 2333344444433 2467
Q ss_pred EEEEeeCCCCCCCCCCCccCHHHHHHHHH-------hCCCcEEEecCCCCcCHHHH
Q psy38 93 FALVGCKLDLLQSGVPREVSEAEAKAFAS-------QNDILHFETSSRSGFQVENA 141 (193)
Q Consensus 93 iilv~nK~Dl~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~Sa~~~~~i~e~ 141 (193)
+++|+||+|+... ......++..++.. ..+++++++||++|.|+.+.
T Consensus 120 ~iiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 120 PIVVINKIDRPDA--RPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred EEEEEECCCCCCC--CHHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence 8899999999642 11112344444442 23678999999999887544
No 147
>KOG0076|consensus
Probab=99.69 E-value=4.2e-17 Score=114.70 Aligned_cols=138 Identities=22% Similarity=0.275 Sum_probs=107.3
Q ss_pred CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCC
Q psy38 10 QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPH 89 (193)
Q Consensus 10 ~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 89 (193)
.+..||+|...... ++ + +..+.|||.+|++..+++|..||..++++|+++|+++++.|++...-++.+...-...
T Consensus 51 ~ki~~tvgLnig~i--~v-~--~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~le 125 (197)
T KOG0076|consen 51 SKITPTVGLNIGTI--EV-C--NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLE 125 (197)
T ss_pred HHeecccceeecce--ee-c--cceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 45678888655544 44 3 3678999999999999999999999999999999999999999988888887776677
Q ss_pred CCeEEEEeeCCCCCCCCCCCccCHHHH-HHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 90 RPVFALVGCKLDLLQSGVPREVSEAEA-KAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 90 ~~piilv~nK~Dl~~~~~~~~v~~~~~-~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
..|+++.+||.|+.+.....++..-.. -+...+...++..+||.+|+||++...|++..+-++
T Consensus 126 g~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 126 GAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred CCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 899999999999976321111111111 011122446899999999999999999999977665
No 148
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.69 E-value=7.4e-16 Score=122.61 Aligned_cols=116 Identities=17% Similarity=0.057 Sum_probs=88.8
Q ss_pred EEEEEeeCCCccc----cccchhh---hccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcC-CCCCeEEEEeeCCCCCC
Q psy38 33 IKLQLWDTAGQER----FRSITKS---YYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIE-PHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 33 ~~l~l~D~~g~~~----~~~~~~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 104 (193)
..+.+||++|..+ ...+... +++.++++|+|+|+++.++++++..|..++..+.. ....|+++|+||+|+..
T Consensus 206 ~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 206 KSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred cEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 4688999999742 1223333 45579999999999988889999999999987643 23578999999999965
Q ss_pred CCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 105 SGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 105 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
. ..+..+....++...+.+++++||+++.||+++|.+|.+.+.+
T Consensus 286 ~---~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 286 E---EEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred c---hhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 2 3333344555556667899999999999999999999987654
No 149
>KOG0074|consensus
Probab=99.66 E-value=8.8e-17 Score=109.51 Aligned_cols=141 Identities=25% Similarity=0.244 Sum_probs=105.9
Q ss_pred eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38 3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW 78 (193)
Q Consensus 3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 78 (193)
++|.++ .....||.| |..+.+.+ + ..+++.+||++|+...+..|..||++.|++|+|.|.+|...|+++..-
T Consensus 32 T~LKqL~sED~~hltpT~G--Fn~k~v~~-~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~e 107 (185)
T KOG0074|consen 32 TFLKQLKSEDPRHLTPTNG--FNTKKVEY-D-GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEE 107 (185)
T ss_pred hHHHHHccCChhhccccCC--cceEEEee-c-CcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHH
Confidence 455555 456778887 77777776 4 368999999999999999999999999999999999999999999877
Q ss_pred HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38 79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
+.++.+..+....|+++.+||.|+..+.....+....-....+...+.+-+|||.++.|+.+--+|+..
T Consensus 108 l~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 108 LVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQS 176 (185)
T ss_pred HHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchhhhc
Confidence 777777767778999999999998553111111111111111223357889999999999888887754
No 150
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.65 E-value=1.3e-15 Score=129.50 Aligned_cols=123 Identities=21% Similarity=0.275 Sum_probs=93.2
Q ss_pred eeeEEEEEEEe--c--CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe
Q psy38 17 GVDFFARLVTM--R--DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV 92 (193)
Q Consensus 17 ~~~~~~~~~~~--~--~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 92 (193)
|+++....+.+ . ++..+.+.||||+|+.+|...+..++..+|++|+|+|+++..+.+....|...+. .+.|
T Consensus 50 GiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-----~~ip 124 (595)
T TIGR01393 50 GITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-----NDLE 124 (595)
T ss_pred CCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-----cCCC
Confidence 55555544433 1 4667999999999999999999999999999999999998777776666654432 2468
Q ss_pred EEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC---cEEEecCCCCcCHHHHHHHHHHHH
Q psy38 93 FALVGCKLDLLQSGVPREVSEAEAKAFASQNDI---LHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 93 iilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
+++|+||+|+... .......+++...++ .++++||++|.|++++|++|++.+
T Consensus 125 iIiViNKiDl~~~-----~~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 125 IIPVINKIDLPSA-----DPERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred EEEEEECcCCCcc-----CHHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence 8999999998642 122233455555555 489999999999999999998865
No 151
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.63 E-value=1.6e-15 Score=109.95 Aligned_cols=113 Identities=18% Similarity=0.132 Sum_probs=82.8
Q ss_pred EEEEEeeCCCccc----cccch---hhhccCccEEEEEEeCCCh------hHHhhHHHHHHHHHHhcCC------CCCeE
Q psy38 33 IKLQLWDTAGQER----FRSIT---KSYYRNSVGALLVYDITSR------ASFEHIPVWMMEAKRHIEP------HRPVF 93 (193)
Q Consensus 33 ~~l~l~D~~g~~~----~~~~~---~~~~~~~d~~i~v~d~~~~------~s~~~~~~~~~~i~~~~~~------~~~pi 93 (193)
..+.+|||+|... ...+. ..+++++|++++|+|+++. .++.+...|...+...... ...|+
T Consensus 44 ~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 123 (176)
T cd01881 44 ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPV 123 (176)
T ss_pred CeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCe
Confidence 5679999999732 22222 3457789999999999987 5788888888888765422 35899
Q ss_pred EEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 94 ALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 94 ilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
++|+||+|+.. ................+..++++||+++.|++++++++...
T Consensus 124 ivv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 124 IYVLNKIDLDD---AEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EEEEEchhcCc---hhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 99999999965 22222222334444456789999999999999999998764
No 152
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.63 E-value=1.3e-15 Score=126.89 Aligned_cols=141 Identities=16% Similarity=0.150 Sum_probs=93.9
Q ss_pred eeeeec------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcc----------ccccch-hhhccCccEEEEEEe
Q psy38 3 TLLYLY------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQE----------RFRSIT-KSYYRNSVGALLVYD 65 (193)
Q Consensus 3 sll~r~------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~----------~~~~~~-~~~~~~~d~~i~v~d 65 (193)
||+|+| .....|+++.+.....+.+ ++.. +.+|||+|.. .|..+. ..+++++|++|+|+|
T Consensus 226 SLin~l~~~~~~~~s~~~gtT~d~~~~~~~~-~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~D 302 (472)
T PRK03003 226 SLLNKLAGEERSVVDDVAGTTVDPVDSLIEL-GGKT--WRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLID 302 (472)
T ss_pred HHHHHHhCCCcccccCCCCccCCcceEEEEE-CCEE--EEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEe
Confidence 677777 1233445556777777877 7755 5799999963 222222 246789999999999
Q ss_pred CCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHH
Q psy38 66 ITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAV 145 (193)
Q Consensus 66 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i 145 (193)
+++..+++++. ++..+.. ...|+++|+||+|+........+..+....+.....++++++||++|.||+++|..+
T Consensus 303 a~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i 377 (472)
T PRK03003 303 ASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPAL 377 (472)
T ss_pred CCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHH
Confidence 99988877763 4444443 347899999999996421001111111112222234689999999999999999999
Q ss_pred HHHHHH
Q psy38 146 TQEIYN 151 (193)
Q Consensus 146 ~~~i~~ 151 (193)
.+.+..
T Consensus 378 ~~~~~~ 383 (472)
T PRK03003 378 ETALES 383 (472)
T ss_pred HHHHHH
Confidence 886643
No 153
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.63 E-value=3.6e-15 Score=107.43 Aligned_cols=139 Identities=18% Similarity=0.089 Sum_probs=88.1
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecC-CcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRD-GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
||+++| ...+.++...++....+.. + +....+.+|||+|+..|..++..++..+|++++|+|+++....+. .
T Consensus 15 sli~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~ 92 (168)
T cd01887 15 TLLDKIRKTNVAAGEAGGITQHIGAFEVPA-EVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQT-I 92 (168)
T ss_pred HHHHHHHhcccccccCCCeEEeeccEEEec-ccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHH-H
Confidence 567776 2222223333444444444 2 245788999999999998888889999999999999987432111 1
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH------hCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS------QNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
..+..+.. ...|+++|+||+|+..... ..+ ......+.. ...++++++||++|.|+.++|+++.+..
T Consensus 93 ~~~~~~~~----~~~p~ivv~NK~Dl~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 93 EAIKLAKA----ANVPFIVALNKIDKPNANP-ERV-KNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred HHHHHHHH----cCCCEEEEEEceecccccH-HHH-HHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 11222222 2468889999999864210 001 111111111 1236899999999999999999998864
No 154
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.62 E-value=6.1e-15 Score=117.26 Aligned_cols=113 Identities=16% Similarity=0.110 Sum_probs=85.9
Q ss_pred EEEEEeeCCCcccc----ccchhhh---ccCccEEEEEEeCCCh---hHHhhHHHHHHHHHHhcC-CCCCeEEEEeeCCC
Q psy38 33 IKLQLWDTAGQERF----RSITKSY---YRNSVGALLVYDITSR---ASFEHIPVWMMEAKRHIE-PHRPVFALVGCKLD 101 (193)
Q Consensus 33 ~~l~l~D~~g~~~~----~~~~~~~---~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~D 101 (193)
..+.+||+||..+. ..+...+ ++.++++++|+|+++. ++++++..|.+++..+.. ....|+++|+||+|
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~D 284 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKID 284 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCcc
Confidence 66899999997432 2233444 4469999999999986 688888889888877642 23578999999999
Q ss_pred CCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 102 LLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 102 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
+... . ...+....++...+.+++++||+++.|++++|.++.+.+
T Consensus 285 L~~~---~-~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 285 LLDE---E-ELAELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred CCCh---H-HHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 9652 1 223445556666778999999999999999999998753
No 155
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.62 E-value=3.7e-15 Score=111.07 Aligned_cols=132 Identities=20% Similarity=0.095 Sum_probs=90.2
Q ss_pred eeeeecc-------CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcccc---------ccchhhhccCccEEEEEEeC
Q psy38 3 TLLYLYI-------QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERF---------RSITKSYYRNSVGALLVYDI 66 (193)
Q Consensus 3 sll~r~~-------~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~---------~~~~~~~~~~~d~~i~v~d~ 66 (193)
||++++. ..+.+|++ .....+.+ ++. ..+.+|||+|.... ... ...+.++|++++|+|+
T Consensus 56 tLl~~l~~~~~~~~~~~~~t~~--~~~~~~~~-~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~~~~~~d~ii~v~D~ 130 (204)
T cd01878 56 TLFNALTGADVYAEDQLFATLD--PTTRRLRL-PDG-REVLLTDTVGFIRDLPHQLVEAFRST-LEEVAEADLLLHVVDA 130 (204)
T ss_pred HHHHHHhcchhccCCccceecc--ceeEEEEe-cCC-ceEEEeCCCccccCCCHHHHHHHHHH-HHHHhcCCeEEEEEEC
Confidence 5666661 22344543 33344455 332 36889999997321 111 1236789999999999
Q ss_pred CChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHH
Q psy38 67 TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVT 146 (193)
Q Consensus 67 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~ 146 (193)
+++.++.....|...+... .....|+++|+||+|+... .... ..+...+.+++++||+++.|++++|.+|.
T Consensus 131 ~~~~~~~~~~~~~~~l~~~-~~~~~~viiV~NK~Dl~~~---~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~ 201 (204)
T cd01878 131 SDPDYEEQIETVEKVLKEL-GAEDIPMILVLNKIDLLDD---EELE-----ERLEAGRPDAVFISAKTGEGLDELLEAIE 201 (204)
T ss_pred CCCChhhHHHHHHHHHHHc-CcCCCCEEEEEEccccCCh---HHHH-----HHhhcCCCceEEEEcCCCCCHHHHHHHHH
Confidence 9988888877777666543 3345789999999998552 1111 34445567899999999999999999998
Q ss_pred HH
Q psy38 147 QE 148 (193)
Q Consensus 147 ~~ 148 (193)
..
T Consensus 202 ~~ 203 (204)
T cd01878 202 EL 203 (204)
T ss_pred hh
Confidence 75
No 156
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.61 E-value=9.3e-15 Score=120.36 Aligned_cols=132 Identities=18% Similarity=0.227 Sum_probs=98.5
Q ss_pred eeeeec-------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccc--------hhhhccCccEEEEEEeCC
Q psy38 3 TLLYLY-------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSI--------TKSYYRNSVGALLVYDIT 67 (193)
Q Consensus 3 sll~r~-------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~--------~~~~~~~~d~~i~v~d~~ 67 (193)
||+|++ ...+ |+.+.++....+.+ +| ..+.+|||+|...+... ...+++++|++++|||++
T Consensus 218 SLiN~L~~~~~aivs~~-pgtTrd~~~~~i~~-~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s 293 (442)
T TIGR00450 218 SLLNALLKQDRAIVSDI-KGTTRDVVEGDFEL-NG--ILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDAS 293 (442)
T ss_pred HHHHHHhCCCCcccCCC-CCcEEEEEEEEEEE-CC--EEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECC
Confidence 677777 2334 34457888888888 77 45689999998655432 246788999999999999
Q ss_pred ChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 68 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
++.+++.. |+..+.. ...|+++|+||.|+... ....++...+.+++++||++ .||+++|+.+.+
T Consensus 294 ~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~---------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~ 357 (442)
T TIGR00450 294 QPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN---------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQ 357 (442)
T ss_pred CCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc---------chhhhhhhcCCceEEEEEec-CCHHHHHHHHHH
Confidence 98877765 7666543 24788899999998541 12345666778899999997 699999999999
Q ss_pred HHHHHhc
Q psy38 148 EIYNRVQ 154 (193)
Q Consensus 148 ~i~~~~~ 154 (193)
.+.+...
T Consensus 358 ~i~~~~~ 364 (442)
T TIGR00450 358 KINAFYS 364 (442)
T ss_pred HHHHHhc
Confidence 8877653
No 157
>PRK04213 GTP-binding protein; Provisional
Probab=99.61 E-value=8.4e-16 Score=114.29 Aligned_cols=133 Identities=19% Similarity=0.179 Sum_probs=82.4
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCC-----------ccccccchhhhcc----CccEEE
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAG-----------QERFRSITKSYYR----NSVGAL 61 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g-----------~~~~~~~~~~~~~----~~d~~i 61 (193)
+||++++ ...+.|++ ++....+.+ + .+.+|||+| ++.++.++..++. .+++++
T Consensus 23 SsLin~l~~~~~~~~~~~~~--t~~~~~~~~-~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 95 (201)
T PRK04213 23 STLVRELTGKKVRVGKRPGV--TRKPNHYDW-G----DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAV 95 (201)
T ss_pred HHHHHHHhCCCCccCCCCce--eeCceEEee-c----ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEE
Confidence 3677777 22334433 444444444 2 489999999 5667666666664 356788
Q ss_pred EEEeCCChhHHhhHHHHH--------HHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC--------
Q psy38 62 LVYDITSRASFEHIPVWM--------MEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-------- 125 (193)
Q Consensus 62 ~v~d~~~~~s~~~~~~~~--------~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-------- 125 (193)
+|+|.++...+. ..|. ..+.......+.|+++|+||+|+... . .+...+++...++
T Consensus 96 ~v~d~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~---~---~~~~~~~~~~~~~~~~~~~~~ 167 (201)
T PRK04213 96 LVVDGKSFIEII--ERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKN---R---DEVLDEIAERLGLYPPWRQWQ 167 (201)
T ss_pred EEEeCccccccc--cccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCc---H---HHHHHHHHHHhcCCccccccC
Confidence 888875422110 1221 11111111235788999999998652 1 3345556665554
Q ss_pred -cEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 126 -LHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 126 -~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
+++++||++| |++++|++|.+.+.
T Consensus 168 ~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 168 DIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred CcEEEEecccC-CHHHHHHHHHHhhc
Confidence 4799999999 99999999988653
No 158
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.59 E-value=1.4e-14 Score=122.79 Aligned_cols=130 Identities=18% Similarity=0.133 Sum_probs=90.2
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh---hHHh
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR---ASFE 73 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~ 73 (193)
+||+++| ...+.+++..++....+.+ ++. ..+.||||||++.|..++...+..+|++|+|+|+++. ++++
T Consensus 101 TSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~-~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e 178 (587)
T TIGR00487 101 TSLLDSIRKTKVAQGEAGGITQHIGAYHVEN-EDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIE 178 (587)
T ss_pred HHHHHHHHhCCcccccCCceeecceEEEEEE-CCC-cEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHH
Confidence 4677776 3334444555566566666 332 2688999999999999998899999999999999863 3333
Q ss_pred hHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC-------C--CcEEEecCCCCcCHHHHHHH
Q psy38 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-------D--ILHFETSSRSGFQVENAFTA 144 (193)
Q Consensus 74 ~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~-------~--~~~~~~Sa~~~~~i~e~f~~ 144 (193)
.+ .... ..+.|+++++||+|+.+. ..+...+..... + .+++++||++|.|++++|++
T Consensus 179 ~i----~~~~----~~~vPiIVviNKiDl~~~------~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~ 244 (587)
T TIGR00487 179 AI----SHAK----AANVPIIVAINKIDKPEA------NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDM 244 (587)
T ss_pred HH----HHHH----HcCCCEEEEEECcccccC------CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHh
Confidence 22 2222 234789999999998542 223333333222 2 47999999999999999999
Q ss_pred HHH
Q psy38 145 VTQ 147 (193)
Q Consensus 145 i~~ 147 (193)
+..
T Consensus 245 I~~ 247 (587)
T TIGR00487 245 ILL 247 (587)
T ss_pred hhh
Confidence 875
No 159
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.58 E-value=1.4e-14 Score=120.67 Aligned_cols=133 Identities=20% Similarity=0.152 Sum_probs=89.6
Q ss_pred eeeeecc------CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccc--------cccchhhhccCccEEEEEEeCCC
Q psy38 3 TLLYLYI------QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQER--------FRSITKSYYRNSVGALLVYDITS 68 (193)
Q Consensus 3 sll~r~~------~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~--------~~~~~~~~~~~~d~~i~v~d~~~ 68 (193)
||+||+. ....|++..+.....+.+ ++. .+.+|||+|.+. +......+++++|++|+|+|+++
T Consensus 53 SL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~-~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~ 129 (472)
T PRK03003 53 TLVNRILGRREAVVEDVPGVTRDRVSYDAEW-NGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATV 129 (472)
T ss_pred HHHHHHhCcCcccccCCCCCCEeeEEEEEEE-CCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 6777771 233444445666666666 664 578999999763 33345668899999999999998
Q ss_pred hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHH
Q psy38 69 RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 69 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
..++.. ..|...+.. ...|+++|+||+|+... ..+....+ ..++ ..+++||++|.|++++|++++.
T Consensus 130 ~~s~~~-~~i~~~l~~----~~~piilV~NK~Dl~~~------~~~~~~~~--~~g~~~~~~iSA~~g~gi~eL~~~i~~ 196 (472)
T PRK03003 130 GATATD-EAVARVLRR----SGKPVILAANKVDDERG------EADAAALW--SLGLGEPHPVSALHGRGVGDLLDAVLA 196 (472)
T ss_pred CCCHHH-HHHHHHHHH----cCCCEEEEEECccCCcc------chhhHHHH--hcCCCCeEEEEcCCCCCcHHHHHHHHh
Confidence 755432 233333332 24799999999998541 11222222 2344 4578999999999999999998
Q ss_pred HHHH
Q psy38 148 EIYN 151 (193)
Q Consensus 148 ~i~~ 151 (193)
.+.+
T Consensus 197 ~l~~ 200 (472)
T PRK03003 197 ALPE 200 (472)
T ss_pred hccc
Confidence 8744
No 160
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.57 E-value=3.6e-14 Score=100.86 Aligned_cols=116 Identities=16% Similarity=0.068 Sum_probs=79.8
Q ss_pred eeEEEEEEEecCCcEEEEEEeeCCCcccccc--------chhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCC
Q psy38 18 VDFFARLVTMRDGARIKLQLWDTAGQERFRS--------ITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPH 89 (193)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~--------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 89 (193)
.+.....+.. ++ ..+.+|||+|...+.. .....++++|++++++|..+..+.... ++..+... .
T Consensus 33 ~~~~~~~~~~-~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~--~~~~~~~~---~ 104 (157)
T cd01894 33 RDRIYGEAEW-GG--REFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE--EIAKYLRK---S 104 (157)
T ss_pred eCceeEEEEE-CC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH--HHHHHHHh---c
Confidence 4555555555 44 6789999999987544 234567889999999999875443332 22222222 2
Q ss_pred CCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHH
Q psy38 90 RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 90 ~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
..|+++|+||+|+... ... .......+. +++++|++++.|++++|+++++++
T Consensus 105 ~~piiiv~nK~D~~~~---~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 105 KKPVILVVNKVDNIKE---EDE-----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred CCCEEEEEECcccCCh---HHH-----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence 3789999999998652 111 223334566 789999999999999999998753
No 161
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.57 E-value=2.9e-14 Score=114.29 Aligned_cols=131 Identities=21% Similarity=0.158 Sum_probs=88.9
Q ss_pred eeeeecc-------CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcc---------ccccchhhhccCccEEEEEEeC
Q psy38 3 TLLYLYI-------QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQE---------RFRSITKSYYRNSVGALLVYDI 66 (193)
Q Consensus 3 sll~r~~-------~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~---------~~~~~~~~~~~~~d~~i~v~d~ 66 (193)
||+|++. +...+|. |.....+.++++ ..+.||||+|.. .|.... ..+.++|++++|+|+
T Consensus 204 SLln~L~~~~~~v~~~~~tT~--d~~~~~i~~~~~--~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~ 278 (351)
T TIGR03156 204 TLFNALTGADVYAADQLFATL--DPTTRRLDLPDG--GEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDA 278 (351)
T ss_pred HHHHHHhCCceeeccCCcccc--CCEEEEEEeCCC--ceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEEC
Confidence 5677771 1223443 566677777444 468899999972 222222 247799999999999
Q ss_pred CChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHH
Q psy38 67 TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVT 146 (193)
Q Consensus 67 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~ 146 (193)
+++.+++.+..|...+... ...+.|+++|+||+|+... ..+ ... .....+++.+||++|.|+++++.+|.
T Consensus 279 s~~~~~~~~~~~~~~L~~l-~~~~~piIlV~NK~Dl~~~---~~v-----~~~-~~~~~~~i~iSAktg~GI~eL~~~I~ 348 (351)
T TIGR03156 279 SDPDREEQIEAVEKVLEEL-GAEDIPQLLVYNKIDLLDE---PRI-----ERL-EEGYPEAVFVSAKTGEGLDLLLEAIA 348 (351)
T ss_pred CCCchHHHHHHHHHHHHHh-ccCCCCEEEEEEeecCCCh---HhH-----HHH-HhCCCCEEEEEccCCCCHHHHHHHHH
Confidence 9988887776666555443 2345789999999998541 111 111 11234689999999999999999987
Q ss_pred HH
Q psy38 147 QE 148 (193)
Q Consensus 147 ~~ 148 (193)
+.
T Consensus 349 ~~ 350 (351)
T TIGR03156 349 ER 350 (351)
T ss_pred hh
Confidence 64
No 162
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.56 E-value=2.5e-14 Score=118.28 Aligned_cols=128 Identities=20% Similarity=0.202 Sum_probs=91.7
Q ss_pred eeeeecc------CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccc--------hhhhccCccEEEEEEeCCC
Q psy38 3 TLLYLYI------QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSI--------TKSYYRNSVGALLVYDITS 68 (193)
Q Consensus 3 sll~r~~------~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~--------~~~~~~~~d~~i~v~d~~~ 68 (193)
||+|++. ....|....++....+.+ +| ..+.+|||+|.+++... ...+++++|++++|+|+++
T Consensus 230 SLln~L~~~~~a~v~~~~gtT~d~~~~~i~~-~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~ 306 (449)
T PRK05291 230 SLLNALLGEERAIVTDIAGTTRDVIEEHINL-DG--IPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASE 306 (449)
T ss_pred HHHHHHhCCCCcccCCCCCcccccEEEEEEE-CC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCC
Confidence 5677761 112233335777777887 76 55789999998765432 2246889999999999999
Q ss_pred hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 69 RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 69 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
+.++++...|.. ....|+++|+||+|+... .... ...+.+++++||++|.|++++++++.+.
T Consensus 307 ~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~~---~~~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~ 368 (449)
T PRK05291 307 PLTEEDDEILEE-------LKDKPVIVVLNKADLTGE---IDLE--------EENGKPVIRISAKTGEGIDELREAIKEL 368 (449)
T ss_pred CCChhHHHHHHh-------cCCCCcEEEEEhhhcccc---chhh--------hccCCceEEEEeeCCCCHHHHHHHHHHH
Confidence 887776544433 234788999999999652 1111 2345689999999999999999999987
Q ss_pred HHH
Q psy38 149 IYN 151 (193)
Q Consensus 149 i~~ 151 (193)
+..
T Consensus 369 l~~ 371 (449)
T PRK05291 369 AFG 371 (449)
T ss_pred Hhh
Confidence 754
No 163
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.55 E-value=5.2e-14 Score=119.79 Aligned_cols=134 Identities=14% Similarity=0.120 Sum_probs=95.8
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccc------hhhhc--cCccEEEEEEeCCC
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSI------TKSYY--RNSVGALLVYDITS 68 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~------~~~~~--~~~d~~i~v~d~~~ 68 (193)
+||+|++ .....|++..+.....+.+ ++ ..+++|||+|+.++... .+.++ +++|++++|+|.++
T Consensus 8 SSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~-~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ 84 (591)
T TIGR00437 8 STLFNALTGANQTVGNWPGVTVEKKEGKLGF-QG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASN 84 (591)
T ss_pred HHHHHHHhCCCCeecCCCCeEEEEEEEEEEE-CC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCc
Confidence 3677777 1233455556777777777 65 45789999999877553 34444 37899999999987
Q ss_pred hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 69 RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 69 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
.+. ...+..++.+ .+.|+++|+||.|+.+ .+.+. .+...+++..+++++++||++|.|++++|+++.+.
T Consensus 85 ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~---~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 85 LER---NLYLTLQLLE----LGIPMILALNLVDEAE---KKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred chh---hHHHHHHHHh----cCCCEEEEEehhHHHH---hCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 432 2334444433 2479999999999865 23333 34567888889999999999999999999999875
Q ss_pred H
Q psy38 149 I 149 (193)
Q Consensus 149 i 149 (193)
.
T Consensus 154 ~ 154 (591)
T TIGR00437 154 I 154 (591)
T ss_pred h
Confidence 3
No 164
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.55 E-value=1.9e-14 Score=98.12 Aligned_cols=96 Identities=27% Similarity=0.514 Sum_probs=71.6
Q ss_pred eeeeecc-C------CCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH
Q psy38 3 TLLYLYI-Q------ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI 75 (193)
Q Consensus 3 sll~r~~-~------~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 75 (193)
|||++|. . .+.++.+.++......+ .+....+++||++|++.+...+..++.++|++|+|||++++.||+.+
T Consensus 14 sLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~ 92 (119)
T PF08477_consen 14 SLIRRLCGGEFPDNSVPEETSEITIGVDVIVV-DGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYL 92 (119)
T ss_dssp HHHHHHHHSS--------SSTTSCEEEEEEEE-TTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHH
T ss_pred HHHHHHhcCCCcccccccccCCCcEEEEEEEe-cCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHH
Confidence 5677771 1 23344455566556666 77777799999999999888888889999999999999999999997
Q ss_pred HH---HHHHHHHhcCCCCCeEEEEeeCCC
Q psy38 76 PV---WMMEAKRHIEPHRPVFALVGCKLD 101 (193)
Q Consensus 76 ~~---~~~~i~~~~~~~~~piilv~nK~D 101 (193)
.. |+..+... ..+.|+++||||.|
T Consensus 93 ~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 93 SQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred HHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 44 56666553 23499999999998
No 165
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.55 E-value=4.4e-14 Score=120.05 Aligned_cols=129 Identities=19% Similarity=0.169 Sum_probs=95.1
Q ss_pred cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC---hhHHhhHHHHHHHHHHh
Q psy38 9 IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS---RASFEHIPVWMMEAKRH 85 (193)
Q Consensus 9 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~ 85 (193)
.+++.+++.+++....+.. ++ ..+.|||++|+++|......++.++|++++|+|+++ +++++.+. -+. .
T Consensus 29 ~eE~~rGiTid~~~~~~~~-~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~----il~-~ 100 (581)
T TIGR00475 29 PEEKKRGMTIDLGFAYFPL-PD--YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLA----VLD-L 100 (581)
T ss_pred hhHhcCCceEEeEEEEEEe-CC--EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHH----HHH-H
Confidence 3456677777888777877 55 789999999999998888888999999999999987 44554432 122 2
Q ss_pred cCCCCCe-EEEEeeCCCCCCCCCCCcc--CHHHHHHHHHhC----CCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 86 IEPHRPV-FALVGCKLDLLQSGVPREV--SEAEAKAFASQN----DILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 86 ~~~~~~p-iilv~nK~Dl~~~~~~~~v--~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
. ..| +++|+||+|+.+. ..+ ..++..++.... +++++++||++|.|+++++.++...+-.
T Consensus 101 l---gi~~iIVVlNK~Dlv~~---~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 101 L---GIPHTIVVITKADRVNE---EEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred c---CCCeEEEEEECCCCCCH---HHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 1 245 8899999999652 211 233455555543 4789999999999999999988775543
No 166
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.54 E-value=2.8e-14 Score=117.75 Aligned_cols=122 Identities=21% Similarity=0.153 Sum_probs=82.8
Q ss_pred eeEEEEEEEecCCcEEEEEEeeCCCccccccch-----------hhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhc
Q psy38 18 VDFFARLVTMRDGARIKLQLWDTAGQERFRSIT-----------KSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHI 86 (193)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~-----------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 86 (193)
.+.....+.. ++. .+.+|||+|..++.... ..+++.+|++|+|+|++++.+.++.. ++..+..
T Consensus 208 ~~~~~~~~~~-~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~-- 281 (429)
T TIGR03594 208 RDSIDIPFER-NGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE-- 281 (429)
T ss_pred ECcEeEEEEE-CCc--EEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH--
Confidence 4565566666 664 68899999976544321 24678999999999999876666542 3333333
Q ss_pred CCCCCeEEEEeeCCCCCCCCCCCccCHHHHH-HHHHh----CCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 87 EPHRPVFALVGCKLDLLQSGVPREVSEAEAK-AFASQ----NDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 87 ~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~-~~~~~----~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
...|+++|+||+|+.+. . ...++.. .+... .+++++++||++|.|++++|.++.+....
T Consensus 282 --~~~~iiiv~NK~Dl~~~---~-~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 282 --AGKALVIVVNKWDLVKD---E-KTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred --cCCcEEEEEECcccCCC---H-HHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 24789999999999621 1 1111111 12222 34799999999999999999999986554
No 167
>PRK15494 era GTPase Era; Provisional
Probab=99.54 E-value=5.3e-14 Score=112.50 Aligned_cols=133 Identities=23% Similarity=0.257 Sum_probs=87.7
Q ss_pred eeeeeec--------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccc-cccchh-------hhccCccEEEEEEe
Q psy38 2 VTLLYLY--------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQER-FRSITK-------SYYRNSVGALLVYD 65 (193)
Q Consensus 2 ~sll~r~--------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-~~~~~~-------~~~~~~d~~i~v~d 65 (193)
+||+|+| .+.+.+|. +.....+.. ++ ..+.||||+|..+ +..+.. ..+.++|++++|+|
T Consensus 66 STLin~l~~~k~~ivs~k~~tTr--~~~~~~~~~-~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD 140 (339)
T PRK15494 66 STLLNRIIGEKLSIVTPKVQTTR--SIITGIITL-KD--TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIID 140 (339)
T ss_pred HHHHHHHhCCceeeccCCCCCcc--CcEEEEEEe-CC--eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEE
Confidence 3677777 12333342 445555666 55 4679999999843 333222 34779999999999
Q ss_pred CCChhHHhhHHH-HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC--CcEEEecCCCCcCHHHHH
Q psy38 66 ITSRASFEHIPV-WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND--ILHFETSSRSGFQVENAF 142 (193)
Q Consensus 66 ~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~e~f 142 (193)
.++ +|..... |+..+... ..|.++|+||+|+.. . ...+..+++...+ ..++++||++|.|++++|
T Consensus 141 ~~~--s~~~~~~~il~~l~~~----~~p~IlViNKiDl~~----~--~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~ 208 (339)
T PRK15494 141 SLK--SFDDITHNILDKLRSL----NIVPIFLLNKIDIES----K--YLNDIKAFLTENHPDSLLFPISALSGKNIDGLL 208 (339)
T ss_pred CCC--CCCHHHHHHHHHHHhc----CCCEEEEEEhhcCcc----c--cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHH
Confidence 765 5666644 55555432 234568999999854 1 2345555655544 579999999999999999
Q ss_pred HHHHHHHHH
Q psy38 143 TAVTQEIYN 151 (193)
Q Consensus 143 ~~i~~~i~~ 151 (193)
++|...+.+
T Consensus 209 ~~L~~~l~~ 217 (339)
T PRK15494 209 EYITSKAKI 217 (339)
T ss_pred HHHHHhCCC
Confidence 999886543
No 168
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.54 E-value=1.2e-13 Score=98.02 Aligned_cols=116 Identities=19% Similarity=0.211 Sum_probs=83.3
Q ss_pred CcceeeEEEEEEEecCCcEEEEEEeeCCCccccccc--------hhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHh
Q psy38 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSI--------TKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRH 85 (193)
Q Consensus 14 pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~--------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 85 (193)
|+...++....+.. ++ ..+.+|||+|...+... ....+..+|++++|+|++++.+......|..
T Consensus 33 ~~~~~~~~~~~~~~-~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~----- 104 (157)
T cd04164 33 AGTTRDVIEESIDI-GG--IPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL----- 104 (157)
T ss_pred CCCccceEEEEEEe-CC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh-----
Confidence 33345666666665 54 67899999997655322 2346779999999999998777666544332
Q ss_pred cCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 86 IEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 86 ~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
....|+++|+||+|+... ... .....+.+++++||+++.|+.+++.+|...+
T Consensus 105 --~~~~~vi~v~nK~D~~~~---~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 105 --PADKPIIVVLNKSDLLPD---SEL-------LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred --hcCCCEEEEEEchhcCCc---ccc-------ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 235788999999998652 111 3344567899999999999999999988753
No 169
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.53 E-value=2.6e-13 Score=110.90 Aligned_cols=113 Identities=16% Similarity=0.124 Sum_probs=86.0
Q ss_pred EEEEEeeCCCccc----cccchhhh---ccCccEEEEEEeCCCh---hHHhhHHHHHHHHHHhcC-CCCCeEEEEeeCCC
Q psy38 33 IKLQLWDTAGQER----FRSITKSY---YRNSVGALLVYDITSR---ASFEHIPVWMMEAKRHIE-PHRPVFALVGCKLD 101 (193)
Q Consensus 33 ~~l~l~D~~g~~~----~~~~~~~~---~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~D 101 (193)
..+.+||+||... ...+...| ++.++++|+|+|+++. +++++...|.+++..+.. ....|+++|+||+|
T Consensus 206 ~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~D 285 (424)
T PRK12297 206 RSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMD 285 (424)
T ss_pred ceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCC
Confidence 5689999999643 22244444 4469999999999864 678888888888887643 23679999999999
Q ss_pred CCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 102 LLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 102 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
+.. ..+....+++..+.+++.+||+++.|+++++.+|.+.+...
T Consensus 286 L~~-------~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 286 LPE-------AEENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred CcC-------CHHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 843 23445566666668899999999999999999999877654
No 170
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.52 E-value=1.1e-13 Score=119.30 Aligned_cols=107 Identities=15% Similarity=0.144 Sum_probs=79.5
Q ss_pred CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh---hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCC
Q psy38 29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR---ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQS 105 (193)
Q Consensus 29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 105 (193)
++....+.||||||++.|..++..++..+|++|+|+|+++. .+++.+. .+. ....|+++|+||+|+...
T Consensus 291 ~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~----~~k----~~~iPiIVViNKiDl~~~ 362 (742)
T CHL00189 291 KDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAIN----YIQ----AANVPIIVAINKIDKANA 362 (742)
T ss_pred cCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHH----HHH----hcCceEEEEEECCCcccc
Confidence 45668899999999999999999999999999999999874 3333322 122 235789999999998652
Q ss_pred CCCCccCHHHHHHH-------HHhCC--CcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 106 GVPREVSEAEAKAF-------ASQND--ILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 106 ~~~~~v~~~~~~~~-------~~~~~--~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
..+...+. ...++ ++++++||++|.|++++|.++....
T Consensus 363 ------~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 363 ------NTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred ------CHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 12222111 22233 6899999999999999999998753
No 171
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.52 E-value=7.7e-14 Score=100.07 Aligned_cols=101 Identities=13% Similarity=0.061 Sum_probs=74.6
Q ss_pred EeeCCCcc-----ccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc
Q psy38 37 LWDTAGQE-----RFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV 111 (193)
Q Consensus 37 l~D~~g~~-----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v 111 (193)
+|||||.. .+..+ ...++++|++++|+|+++..++.. .|+..+. ...|+++++||.|+.. .
T Consensus 41 ~iDtpG~~~~~~~~~~~~-~~~~~~ad~il~v~d~~~~~s~~~--~~~~~~~-----~~~~ii~v~nK~Dl~~------~ 106 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHAL-ITTLQDVDMLIYVHGANDPESRLP--AGLLDIG-----VSKRQIAVISKTDMPD------A 106 (158)
T ss_pred cccCCccccCCHHHHHHH-HHHHhcCCEEEEEEeCCCcccccC--HHHHhcc-----CCCCeEEEEEccccCc------c
Confidence 69999973 22222 234789999999999998876633 3544431 2468889999999854 2
Q ss_pred CHHHHHHHHHhCCC--cEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 112 SEAEAKAFASQNDI--LHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 112 ~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
..+...+++...++ +++++||++|.|++++|.++.+.+-+
T Consensus 107 ~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 107 DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchh
Confidence 34556677777775 89999999999999999999775544
No 172
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.51 E-value=1.7e-13 Score=119.04 Aligned_cols=135 Identities=18% Similarity=0.172 Sum_probs=89.7
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh---hHHh
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR---ASFE 73 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~ 73 (193)
+||++++ ...+.+.+..+.....+.+ ++ ..+.||||+|++.|..++...+..+|++|+|+|+++. ++++
T Consensus 304 TSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~-~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e 380 (787)
T PRK05306 304 TSLLDAIRKTNVAAGEAGGITQHIGAYQVET-NG--GKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIE 380 (787)
T ss_pred HHHHHHHHhCCccccccCceeeeccEEEEEE-CC--EEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHH
Confidence 4677776 2233344434455455666 54 5688999999999999999899999999999999873 3333
Q ss_pred hHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHH--HHHHHhCC--CcEEEecCCCCcCHHHHHHHHHHH
Q psy38 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEA--KAFASQND--ILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 74 ~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~--~~~~~~~~--~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
.+ ..+. ....|+|+++||+|+.+.. ...+..+.. ..++..++ ++++++||++|.|++++|++|...
T Consensus 381 ~i----~~a~----~~~vPiIVviNKiDl~~a~-~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 381 AI----NHAK----AAGVPIIVAINKIDKPGAN-PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred HH----HHHH----hcCCcEEEEEECccccccC-HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 22 1122 2347899999999996521 011111100 01222333 689999999999999999999864
No 173
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.51 E-value=2.2e-13 Score=105.92 Aligned_cols=107 Identities=15% Similarity=0.067 Sum_probs=75.7
Q ss_pred EEEEEeeCCCccccc-cc-------hhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 33 IKLQLWDTAGQERFR-SI-------TKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~-~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
..+.||||||..... .+ ...+++++|++++|+|+++..+.+ ..++..+.. ...|+++|+||+|+..
T Consensus 48 ~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~----~~~p~ilV~NK~Dl~~ 121 (270)
T TIGR00436 48 SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN----LKRPVVLTRNKLDNKF 121 (270)
T ss_pred cEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh----cCCCEEEEEECeeCCC
Confidence 568999999975421 11 245678999999999999876554 334444433 2478999999999854
Q ss_pred CCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHH
Q psy38 105 SGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 105 ~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
.....+....++...+. +++++||++|.|++++++++.+.+
T Consensus 122 ----~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l 163 (270)
T TIGR00436 122 ----KDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHL 163 (270)
T ss_pred ----HHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 11122334455554555 899999999999999999998765
No 174
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.50 E-value=1.2e-13 Score=105.67 Aligned_cols=96 Identities=17% Similarity=0.194 Sum_probs=78.2
Q ss_pred cccccchhhhccCccEEEEEEeCCChh-HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh
Q psy38 44 ERFRSITKSYYRNSVGALLVYDITSRA-SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ 122 (193)
Q Consensus 44 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~ 122 (193)
++|..+.+.+++++|++++|||++++. +|+.+.+|+..+.. .++|+++|+||+||.. ...+..+....+. +
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~---~~~~~~~~~~~~~-~ 95 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLD---DEDMEKEQLDIYR-N 95 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCC---CHHHHHHHHHHHH-H
Confidence 678888899999999999999999877 89999999986654 3477889999999965 2334444454444 5
Q ss_pred CCCcEEEecCCCCcCHHHHHHHHHH
Q psy38 123 NDILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 123 ~~~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
.+++++++||++|.|++++|..+..
T Consensus 96 ~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 96 IGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred CCCeEEEEecCCchhHHHHHhhhcC
Confidence 7889999999999999999998864
No 175
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.50 E-value=4e-13 Score=114.54 Aligned_cols=112 Identities=22% Similarity=0.250 Sum_probs=85.6
Q ss_pred CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCC
Q psy38 29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP 108 (193)
Q Consensus 29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~ 108 (193)
++..+.+.||||+|+.+|...+..++..+|++|+|+|+++....+....|..... .+.|+++|+||.|+...
T Consensus 70 dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~-----~~lpiIvViNKiDl~~a--- 141 (600)
T PRK05433 70 DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NDLEIIPVLNKIDLPAA--- 141 (600)
T ss_pred CCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEEEECCCCCcc---
Confidence 5667999999999999999889999999999999999998655555555543322 24688899999998542
Q ss_pred CccCHHHHHHHHHhCCC---cEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 109 REVSEAEAKAFASQNDI---LHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 109 ~~v~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
. ......++....++ .++.+||++|.|++++|++|.+.+-
T Consensus 142 ~--~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 142 D--PERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred c--HHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 1 12223344444555 3899999999999999999988653
No 176
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.50 E-value=2.5e-13 Score=100.33 Aligned_cols=116 Identities=16% Similarity=0.065 Sum_probs=75.3
Q ss_pred CcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCC
Q psy38 30 GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPR 109 (193)
Q Consensus 30 ~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~ 109 (193)
+....+.+|||+|+..+..........+|++++|+|+++.........|. +.... ..|+++|+||+|+.... ..
T Consensus 65 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~---~~~~iiv~NK~Dl~~~~-~~ 138 (192)
T cd01889 65 EENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL---CKKLIVVLNKIDLIPEE-ER 138 (192)
T ss_pred ccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc---CCCEEEEEECcccCCHH-HH
Confidence 34678999999999765333333456789999999998754433333332 12211 35888999999986411 01
Q ss_pred ccCHHHHHHH-HH------hCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 110 EVSEAEAKAF-AS------QNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 110 ~v~~~~~~~~-~~------~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
....++..+. .. ..+++++.+||++|.|+++++.++.++|..
T Consensus 139 ~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 139 ERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 1112222221 11 235789999999999999999999988753
No 177
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.49 E-value=1.7e-13 Score=102.21 Aligned_cols=113 Identities=14% Similarity=0.137 Sum_probs=75.6
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS 112 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~ 112 (193)
.++.||||+|++.+.......+..+|++++|+|++++.........+..+... ...|+++|+||.|+..+. .....
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~-~~~~~ 158 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEE-QALEN 158 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHH-HHHHH
Confidence 67899999999988777777788899999999998731111111222222221 125788999999985410 00111
Q ss_pred HHHHHHHHHh---CCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 113 EAEAKAFASQ---NDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 113 ~~~~~~~~~~---~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
.+...++... .+++++.+||++|.|++++|+++.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 2333344433 257899999999999999999998643
No 178
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.47 E-value=7.5e-13 Score=109.69 Aligned_cols=126 Identities=14% Similarity=0.058 Sum_probs=85.6
Q ss_pred EEEEEEecCCcEEEEEEeeCCCcccc----ccch---hhhccCccEEEEEEeCCC----hhHHhhHHHHHHHHHHhcC--
Q psy38 21 FARLVTMRDGARIKLQLWDTAGQERF----RSIT---KSYYRNSVGALLVYDITS----RASFEHIPVWMMEAKRHIE-- 87 (193)
Q Consensus 21 ~~~~~~~~~~~~~~l~l~D~~g~~~~----~~~~---~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~-- 87 (193)
..-.+.+ ++ ..+.|||++|.... ..+. -..++.++++|+|+|+++ ++.+.++..|..++..+..
T Consensus 197 ~lGvv~~-~~--~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l 273 (500)
T PRK12296 197 NLGVVQA-GD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPAL 273 (500)
T ss_pred eEEEEEE-CC--eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcc
Confidence 3334555 33 67899999996321 1111 224578999999999985 3456666667767765542
Q ss_pred --------CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 88 --------PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 88 --------~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
....|+|+|+||+|+.+. ..+ .+.........+++++.+||+++.|+++++.+|.+.+....
T Consensus 274 ~~~~~~~~l~~kP~IVVlNKiDL~da---~el-~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 274 DGDLGLGDLAERPRLVVLNKIDVPDA---REL-AEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred cccchhhhhcCCCEEEEEECccchhh---HHH-HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 235789999999999652 222 12222333445789999999999999999999998876644
No 179
>PRK11058 GTPase HflX; Provisional
Probab=99.46 E-value=8.6e-13 Score=108.27 Aligned_cols=126 Identities=20% Similarity=0.148 Sum_probs=83.2
Q ss_pred eeEEEEEEEecCCcEEEEEEeeCCCcccc--ccchh------hhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCC
Q psy38 18 VDFFARLVTMRDGARIKLQLWDTAGQERF--RSITK------SYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPH 89 (193)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~--~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 89 (193)
.|.....+.+ .+. ..+.+|||+|..+. ..++. ..++++|++++|+|++++.+++.+..|..-+... ...
T Consensus 232 ld~~~~~i~l-~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el-~~~ 308 (426)
T PRK11058 232 LDPTLRRIDV-ADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEI-DAH 308 (426)
T ss_pred cCCceEEEEe-CCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh-ccC
Confidence 3555556666 332 25679999997432 22222 2367899999999999988877765544433333 233
Q ss_pred CCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCc-EEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38 90 RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL-HFETSSRSGFQVENAFTAVTQEIYNRVQ 154 (193)
Q Consensus 90 ~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~e~f~~i~~~i~~~~~ 154 (193)
..|+++|+||+|+... . .... .. ...+.+ ++.+||++|.|++++|+++.+.+.....
T Consensus 309 ~~pvIiV~NKiDL~~~---~-~~~~---~~-~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~~~~ 366 (426)
T PRK11058 309 EIPTLLVMNKIDMLDD---F-EPRI---DR-DEENKPIRVWLSAQTGAGIPLLFQALTERLSGEVA 366 (426)
T ss_pred CCCEEEEEEcccCCCc---h-hHHH---HH-HhcCCCceEEEeCCCCCCHHHHHHHHHHHhhhccE
Confidence 5788999999998541 1 1111 11 123444 5889999999999999999998865433
No 180
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.44 E-value=1.3e-12 Score=95.64 Aligned_cols=112 Identities=21% Similarity=0.164 Sum_probs=81.0
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV 111 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v 111 (193)
...+.||||+|..++...+..+++.+|++++|+|++++.+... ..++..+.. ...|+++|+||+|+.... ....
T Consensus 61 ~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~-~~~~ 134 (189)
T cd00881 61 DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEE-DLEE 134 (189)
T ss_pred CEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchh-cHHH
Confidence 4789999999999888888899999999999999987654332 233333332 357899999999986410 0111
Q ss_pred CHHHHHHHHHh--------------CCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 112 SEAEAKAFASQ--------------NDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 112 ~~~~~~~~~~~--------------~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
......+.... ...+++++||++|.|++++|.++...+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 135 VLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred HHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 12233333332 346899999999999999999998864
No 181
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.44 E-value=3.5e-13 Score=111.11 Aligned_cols=129 Identities=12% Similarity=0.043 Sum_probs=84.7
Q ss_pred CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH-HHHHHHHhcCC
Q psy38 10 QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV-WMMEAKRHIEP 88 (193)
Q Consensus 10 ~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~ 88 (193)
++....+.++.....+.. ..+.+.||||+|+++|.......+.++|++|+|+|+++.+++..... +...+....
T Consensus 65 ~e~~rg~Tid~~~~~~~~---~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-- 139 (426)
T TIGR00483 65 EERERGVTIDVAHWKFET---DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-- 139 (426)
T ss_pred HHhhcCceEEEEEEEEcc---CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--
Confidence 344455556666666555 44789999999999887666667789999999999998754322111 111222222
Q ss_pred CCCeEEEEeeCCCCCCCCC-CCccCHHHHHHHHHhCC-----CcEEEecCCCCcCHHHHHH
Q psy38 89 HRPVFALVGCKLDLLQSGV-PREVSEAEAKAFASQND-----ILHFETSSRSGFQVENAFT 143 (193)
Q Consensus 89 ~~~piilv~nK~Dl~~~~~-~~~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~e~f~ 143 (193)
...++++|+||+|+.+... ......++..++++..+ ++++++||++|.|+.+.+.
T Consensus 140 ~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 140 GINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred CCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 2367889999999954100 00112345556666654 5799999999999997553
No 182
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.43 E-value=1.3e-12 Score=107.98 Aligned_cols=116 Identities=22% Similarity=0.171 Sum_probs=81.1
Q ss_pred CcceeeEEEEEEEecCCcEEEEEEeeCCCccc--------cccchhhhccCccEEEEEEeCCChhHHh--hHHHHHHHHH
Q psy38 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQER--------FRSITKSYYRNSVGALLVYDITSRASFE--HIPVWMMEAK 83 (193)
Q Consensus 14 pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~ 83 (193)
|.+..+.....+.+ ++ ..+.+|||+|.+. +......++.++|++|+|+|+++..+.. .+..|+..
T Consensus 33 ~~~t~d~~~~~~~~-~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~-- 107 (435)
T PRK00093 33 PGVTRDRIYGEAEW-LG--REFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK-- 107 (435)
T ss_pred CCCcccceEEEEEE-CC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--
Confidence 33345667677777 66 7789999999876 2233456788999999999998753322 23334332
Q ss_pred HhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHH
Q psy38 84 RHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 84 ~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
. ..|+++|+||+|+.+ ......++ ...++ .++++||.+|.|++++|++++.
T Consensus 108 --~---~~piilv~NK~D~~~-------~~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 108 --S---NKPVILVVNKVDGPD-------EEADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred --c---CCcEEEEEECccCcc-------chhhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 1 478999999999643 11222233 34566 4899999999999999999987
No 183
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.42 E-value=4.8e-12 Score=90.37 Aligned_cols=122 Identities=19% Similarity=0.255 Sum_probs=94.6
Q ss_pred CcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeE
Q psy38 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVF 93 (193)
Q Consensus 14 pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 93 (193)
.|+..||....+. ++ ..+++++||||++|..+|..+.+++.++|++.|.+.+..+ +....+.-+.... .+|+
T Consensus 53 tTva~D~g~~~~~--~~--~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~---~ip~ 124 (187)
T COG2229 53 TTVAMDFGSIELD--ED--TGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN---PIPV 124 (187)
T ss_pred eeEeecccceEEc--Cc--ceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc---CCCE
Confidence 4667777766543 33 6688999999999999999999999999999999998888 4444444443322 2899
Q ss_pred EEEeeCCCCCCCCCCCccCHHHHHHHHHhC--CCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 94 ALVGCKLDLLQSGVPREVSEAEAKAFASQN--DILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 94 ilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
++++||.||... .+.+...++.... .++.++.+|.++.+..+.+..+...
T Consensus 125 vVa~NK~DL~~a-----~ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 125 VVAINKQDLFDA-----LPPEKIREALKLELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred EEEeeccccCCC-----CCHHHHHHHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence 999999999763 3445555555443 7899999999999999998888765
No 184
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.42 E-value=7.8e-13 Score=115.18 Aligned_cols=135 Identities=21% Similarity=0.253 Sum_probs=90.0
Q ss_pred eeeeec-------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccc----------cccch-hhhccCccEEEEEE
Q psy38 3 TLLYLY-------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQER----------FRSIT-KSYYRNSVGALLVY 64 (193)
Q Consensus 3 sll~r~-------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----------~~~~~-~~~~~~~d~~i~v~ 64 (193)
||+|++ ...+.+|. .+.....+.+ ++.. +.+|||+|..+ |..+. ..+++.+|++++|+
T Consensus 465 SLin~l~~~~~~~v~~~~gtT-~d~~~~~~~~-~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilVi 540 (712)
T PRK09518 465 SLLNQLTHEERAVVNDLAGTT-RDPVDEIVEI-DGED--WLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLF 540 (712)
T ss_pred HHHHHHhCccccccCCCCCCC-cCcceeEEEE-CCCE--EEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEE
Confidence 677777 22334443 6777777777 7755 55999999642 22111 23478899999999
Q ss_pred eCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHH-HHHHh----CCCcEEEecCCCCcCHH
Q psy38 65 DITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAK-AFASQ----NDILHFETSSRSGFQVE 139 (193)
Q Consensus 65 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~-~~~~~----~~~~~~~~Sa~~~~~i~ 139 (193)
|+++..+++++. ++..+.. .+.|+++|+||+|+.+. . ..+... .+... ...+++.+||++|.|++
T Consensus 541 Dat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~---~--~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~ 610 (712)
T PRK09518 541 DASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDE---F--RRQRLERLWKTEFDRVTWARRVNLSAKTGWHTN 610 (712)
T ss_pred ECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCCh---h--HHHHHHHHHHHhccCCCCCCEEEEECCCCCCHH
Confidence 999887777664 3344433 24789999999999542 1 111111 12221 13477899999999999
Q ss_pred HHHHHHHHHHHH
Q psy38 140 NAFTAVTQEIYN 151 (193)
Q Consensus 140 e~f~~i~~~i~~ 151 (193)
++|..+.+.+..
T Consensus 611 ~L~~~i~~~~~~ 622 (712)
T PRK09518 611 RLAPAMQEALES 622 (712)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 185
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.42 E-value=2.1e-12 Score=102.46 Aligned_cols=143 Identities=17% Similarity=0.138 Sum_probs=105.0
Q ss_pred cCCCCCcceeeEEEEEEEecCC--------cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh----------h
Q psy38 9 IQISDPTVGVDFFARLVTMRDG--------ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR----------A 70 (193)
Q Consensus 9 ~~~~~pt~~~~~~~~~~~~~~~--------~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~ 70 (193)
.++|.||.. |.....+.. .| ..+.+.+||++|+...+..|..++.+++++|+|.|+++. .
T Consensus 131 ~~~y~Pt~~-Dil~~r~~T-~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~n 208 (317)
T cd00066 131 DPDYIPTEQ-DILRARVKT-TGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTN 208 (317)
T ss_pred CCCCCCChh-Hheeeeccc-CCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcch
Confidence 678888863 554444332 22 357889999999999999999999999999999999873 5
Q ss_pred HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC-------------CCCccCHHHHHHHHHh----------CCCcE
Q psy38 71 SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG-------------VPREVSEAEAKAFASQ----------NDILH 127 (193)
Q Consensus 71 s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-------------~~~~v~~~~~~~~~~~----------~~~~~ 127 (193)
.+.+....+..+.......+.|++|++||.|+...- .......+.+..|... ..+.+
T Consensus 209 rl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~ 288 (317)
T cd00066 209 RMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYP 288 (317)
T ss_pred HHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEE
Confidence 677777777777776555678999999999963310 1112234445444333 23566
Q ss_pred EEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 128 FETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 128 ~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
+.++|.+..++..+|..+.+.|+...
T Consensus 289 ~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 289 HFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred EeccccchHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999988754
No 186
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.40 E-value=9.4e-13 Score=98.21 Aligned_cols=76 Identities=20% Similarity=0.332 Sum_probs=62.9
Q ss_pred CcEEEEEEeeCCCccccccchhhhccCc-cEEEEEEeCCCh-hHHhhHHHHHHHHHHhcC--CCCCeEEEEeeCCCCCCC
Q psy38 30 GARIKLQLWDTAGQERFRSITKSYYRNS-VGALLVYDITSR-ASFEHIPVWMMEAKRHIE--PHRPVFALVGCKLDLLQS 105 (193)
Q Consensus 30 ~~~~~l~l~D~~g~~~~~~~~~~~~~~~-d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~ 105 (193)
+....+.+||+||+.+++..+..+++++ +++|+|+|+++. .++..+..|+..+..... ....|+++|+||.|+..+
T Consensus 45 ~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 45 GKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred CCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 4457899999999999998888999999 999999999987 688888777776654322 246899999999998653
No 187
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.39 E-value=2.1e-12 Score=92.95 Aligned_cols=120 Identities=23% Similarity=0.160 Sum_probs=77.4
Q ss_pred eeEEEEEEEecCCcEEEEEEeeCCCcccccc----------c-hhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhc
Q psy38 18 VDFFARLVTMRDGARIKLQLWDTAGQERFRS----------I-TKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHI 86 (193)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~----------~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 86 (193)
.+.....+.. ++. .+.+|||+|..+... . ....+.++|++++|+|++++.+.... .++..+..
T Consensus 38 ~~~~~~~~~~-~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~-- 111 (174)
T cd01895 38 RDSIDVPFEY-DGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL-RIAGLILE-- 111 (174)
T ss_pred cCceeeEEEE-CCe--eEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh--
Confidence 3455555555 554 467999999753311 1 12356789999999999987665543 23333332
Q ss_pred CCCCCeEEEEeeCCCCCCCCCCCccCHHHHH-HHHHhC----CCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 87 EPHRPVFALVGCKLDLLQSGVPREVSEAEAK-AFASQN----DILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 87 ~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~-~~~~~~----~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
...|+++++||+|+... .....+... .+.... +.+++++||+++.|++++|.++.+.
T Consensus 112 --~~~~~iiv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 112 --EGKALVIVVNKWDLVEK---DSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred --cCCCEEEEEeccccCCc---cHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 24788899999998652 112222212 222222 3689999999999999999998763
No 188
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.39 E-value=2.5e-12 Score=90.87 Aligned_cols=109 Identities=19% Similarity=0.129 Sum_probs=76.9
Q ss_pred EEEEEEeeCCCccccccc-------hhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 32 RIKLQLWDTAGQERFRSI-------TKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
...+.+||++|...+... ...++..+|++++++|.++..+..... |..... ....|+++|+||.|+..
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKIDLLP 118 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEccccCC
Confidence 467899999998765433 345788999999999999876555543 333333 23578999999999865
Q ss_pred CCCCCccCHH---HHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 105 SGVPREVSEA---EAKAFASQNDILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 105 ~~~~~~v~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
. ...... .........+.+++++||.++.|+.++++++.+.
T Consensus 119 ~---~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 119 E---EEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred h---hhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 2 111111 1122333356799999999999999999999875
No 189
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.39 E-value=2.4e-12 Score=109.21 Aligned_cols=108 Identities=18% Similarity=0.176 Sum_probs=74.8
Q ss_pred EEEEeeCCCccccccchhhhccCccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCC-
Q psy38 34 KLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS---RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPR- 109 (193)
Q Consensus 34 ~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~- 109 (193)
.+.||||+|++.|..++..+++.+|++++|+|+++ +.+++.+.. +.. .+.|+++++||+|+.......
T Consensus 70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~----~~vpiIVv~NK~Dl~~~~~~~~ 141 (590)
T TIGR00491 70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM----YKTPFVVAANKIDRIPGWRSHE 141 (590)
T ss_pred cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HHH----cCCCEEEEEECCCccchhhhcc
Confidence 38899999999999999999999999999999987 455554432 121 247899999999996421000
Q ss_pred ccC--------HH------------HHHHHHH------------hC--CCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 110 EVS--------EA------------EAKAFAS------------QN--DILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 110 ~v~--------~~------------~~~~~~~------------~~--~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
..+ .. ...+++. .+ .++++.+||++|.|++++..++....
T Consensus 142 ~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 142 GRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred CchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 000 00 0011111 11 35899999999999999999887543
No 190
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.38 E-value=5.7e-12 Score=109.86 Aligned_cols=132 Identities=19% Similarity=0.127 Sum_probs=85.2
Q ss_pred eeeeecc------CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccc--------cccchhhhccCccEEEEEEeCCC
Q psy38 3 TLLYLYI------QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQER--------FRSITKSYYRNSVGALLVYDITS 68 (193)
Q Consensus 3 sll~r~~------~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~--------~~~~~~~~~~~~d~~i~v~d~~~ 68 (193)
||+|++. ....|++..+.......+ ++ ..+.+|||+|.+. +......+++.+|++|+|+|+++
T Consensus 290 SL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~-~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~ 366 (712)
T PRK09518 290 TLVNRILGRREAVVEDTPGVTRDRVSYDAEW-AG--TDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQV 366 (712)
T ss_pred HHHHHHhCCCceeecCCCCeeEEEEEEEEEE-CC--EEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 5667761 122344444555444455 44 5688999999763 23334567889999999999976
Q ss_pred hhHHhhHH-HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38 69 RASFEHIP-VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT 146 (193)
Q Consensus 69 ~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~ 146 (193)
. +.... .|...+.. ...|+++|+||+|+... .....++.. .+. ..+++||++|.||+++|++++
T Consensus 367 ~--~~~~d~~i~~~Lr~----~~~pvIlV~NK~D~~~~-------~~~~~~~~~-lg~~~~~~iSA~~g~GI~eLl~~i~ 432 (712)
T PRK09518 367 G--LTSTDERIVRMLRR----AGKPVVLAVNKIDDQAS-------EYDAAEFWK-LGLGEPYPISAMHGRGVGDLLDEAL 432 (712)
T ss_pred C--CCHHHHHHHHHHHh----cCCCEEEEEECcccccc-------hhhHHHHHH-cCCCCeEEEECCCCCCchHHHHHHH
Confidence 3 22222 34444432 35799999999998541 111222222 333 467899999999999999999
Q ss_pred HHHHH
Q psy38 147 QEIYN 151 (193)
Q Consensus 147 ~~i~~ 151 (193)
+.+..
T Consensus 433 ~~l~~ 437 (712)
T PRK09518 433 DSLKV 437 (712)
T ss_pred Hhccc
Confidence 87643
No 191
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.37 E-value=3.1e-12 Score=105.82 Aligned_cols=126 Identities=21% Similarity=0.146 Sum_probs=79.7
Q ss_pred eeEEEEEEEecCCcEEEEEEeeCCCccccccc-----------hhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhc
Q psy38 18 VDFFARLVTMRDGARIKLQLWDTAGQERFRSI-----------TKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHI 86 (193)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~-----------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 86 (193)
.+.....+.. ++ ..+.+|||+|..+.... ...+++.+|++|+|+|++++.+.++. .++..+..
T Consensus 209 ~~~~~~~~~~-~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~-- 282 (435)
T PRK00093 209 RDSIDTPFER-DG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDL-RIAGLALE-- 282 (435)
T ss_pred EEEEEEEEEE-CC--eeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH--
Confidence 4555555555 55 45679999996432211 12367889999999999987665554 23333333
Q ss_pred CCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 87 EPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 87 ~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
...|+++|+||+|+.+......+.......+.....++++++||++|.|++++|..+.+....
T Consensus 283 --~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 283 --AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred --cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 247888999999986410000111111111222234699999999999999999998875543
No 192
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.36 E-value=7.9e-12 Score=106.85 Aligned_cols=129 Identities=19% Similarity=0.142 Sum_probs=84.4
Q ss_pred CCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcC
Q psy38 11 ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS---RASFEHIPVWMMEAKRHIE 87 (193)
Q Consensus 11 ~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~ 87 (193)
+....+.+++....+..+++. .+.||||||+++|.......+.++|++++|+|+++ +.+.+.+ . +....
T Consensus 31 E~~rGiTI~l~~~~~~~~~g~--~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl----~-il~~l- 102 (614)
T PRK10512 31 EKKRGMTIDLGYAYWPQPDGR--VLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHL----A-ILQLT- 102 (614)
T ss_pred cccCCceEEeeeEEEecCCCc--EEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHH----H-HHHHc-
Confidence 433333345554455443443 47899999999997777777899999999999987 3333333 2 22222
Q ss_pred CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC---CcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 88 PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND---ILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 88 ~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
..+++++|+||+|+.+.. ......++..++....+ .+++.+||++|.|++++++.|....
T Consensus 103 -gi~~iIVVlNKiDlv~~~-~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 103 -GNPMLTVALTKADRVDEA-RIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLP 165 (614)
T ss_pred -CCCeEEEEEECCccCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence 224467999999985410 00111234445554443 6899999999999999999998654
No 193
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.35 E-value=5.9e-12 Score=93.03 Aligned_cols=137 Identities=19% Similarity=0.192 Sum_probs=82.9
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCc----------cccccchhhhccCc---cEEEEEE
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQ----------ERFRSITKSYYRNS---VGALLVY 64 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~----------~~~~~~~~~~~~~~---d~~i~v~ 64 (193)
||++++ ...+.++.|.......... ...+.+|||+|. +.+..+...+++.+ +++++++
T Consensus 39 sli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 114 (196)
T PRK00454 39 SLINALTNRKNLARTSKTPGRTQLINFFEV----NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLI 114 (196)
T ss_pred HHHHHHhCCCCcccccCCCCceeEEEEEec----CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEE
Confidence 566666 2345566654433333332 267899999994 33444445556544 6788889
Q ss_pred eCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHH
Q psy38 65 DITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTA 144 (193)
Q Consensus 65 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~ 144 (193)
|.+++.+..+ .++...... ...|+++++||.|+.+.. ......+....+.......++++||+++.|++++|+.
T Consensus 115 d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~-~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~ 188 (196)
T PRK00454 115 DSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKG-ERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAA 188 (196)
T ss_pred ecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHH-HHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHH
Confidence 8876543322 122222221 247888999999985420 0111122233444444678999999999999999999
Q ss_pred HHHHH
Q psy38 145 VTQEI 149 (193)
Q Consensus 145 i~~~i 149 (193)
|...+
T Consensus 189 i~~~~ 193 (196)
T PRK00454 189 IAKWL 193 (196)
T ss_pred HHHHh
Confidence 87755
No 194
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.34 E-value=6.2e-12 Score=103.85 Aligned_cols=117 Identities=20% Similarity=0.151 Sum_probs=81.4
Q ss_pred ceeeEEEEEEEecCCcEEEEEEeeCCCcc--------ccccchhhhccCccEEEEEEeCCChhHHhh--HHHHHHHHHHh
Q psy38 16 VGVDFFARLVTMRDGARIKLQLWDTAGQE--------RFRSITKSYYRNSVGALLVYDITSRASFEH--IPVWMMEAKRH 85 (193)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~l~D~~g~~--------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~ 85 (193)
+..+.....+.+ ++ ..+.+|||+|.. .+......+++.+|++++|+|..+..+..+ +..|+. .
T Consensus 33 ~t~d~~~~~~~~-~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~---~- 105 (429)
T TIGR03594 33 VTRDRKYGDAEW-GG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLR---K- 105 (429)
T ss_pred cccCceEEEEEE-CC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHH---H-
Confidence 334666666676 66 458999999963 334445667899999999999987433222 233332 2
Q ss_pred cCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 86 IEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 86 ~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
...|+++|+||+|+... .. ...+ ....++ +++++||.+|.|++++++++...+-
T Consensus 106 ---~~~piilVvNK~D~~~~---~~----~~~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 106 ---SGKPVILVANKIDGKKE---DA----VAAE-FYSLGFGEPIPISAEHGRGIGDLLDAILELLP 160 (429)
T ss_pred ---hCCCEEEEEECccCCcc---cc----cHHH-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhcC
Confidence 24689999999998652 11 1122 335666 7999999999999999999987663
No 195
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.34 E-value=5.4e-12 Score=107.38 Aligned_cols=126 Identities=20% Similarity=0.221 Sum_probs=89.2
Q ss_pred ceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEE
Q psy38 16 VGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFAL 95 (193)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 95 (193)
.|+++..+...+ ....+.+.||||+|+.+|......++..+|++++|+|+++. .+.....|+..+... +.|+++
T Consensus 48 rGiTI~~~~~~v-~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~----~ip~IV 121 (594)
T TIGR01394 48 RGITILAKNTAI-RYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL----GLKPIV 121 (594)
T ss_pred CCccEEeeeEEE-EECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC----CCCEEE
Confidence 345555555455 44568899999999999988889999999999999999863 234455666666553 367789
Q ss_pred EeeCCCCCCCCCCCccCHHHHHHHHH-------hCCCcEEEecCCCCc----------CHHHHHHHHHHHH
Q psy38 96 VGCKLDLLQSGVPREVSEAEAKAFAS-------QNDILHFETSSRSGF----------QVENAFTAVTQEI 149 (193)
Q Consensus 96 v~nK~Dl~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~Sa~~~~----------~i~e~f~~i~~~i 149 (193)
|+||+|+..... ..+ .++..++.. ...++++.+||++|. |+..+|+.+++.+
T Consensus 122 viNKiD~~~a~~-~~v-~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 122 VINKIDRPSARP-DEV-VDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred EEECCCCCCcCH-HHH-HHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 999999865210 111 233333332 235789999999996 7989998888765
No 196
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.34 E-value=1.9e-11 Score=99.36 Aligned_cols=116 Identities=21% Similarity=0.113 Sum_probs=83.0
Q ss_pred EEEEEeeCCCcccccc----ch---hhhccCccEEEEEEeCC---ChhHHhhHHHHHHHHHHhcC-CCCCeEEEEeeCCC
Q psy38 33 IKLQLWDTAGQERFRS----IT---KSYYRNSVGALLVYDIT---SRASFEHIPVWMMEAKRHIE-PHRPVFALVGCKLD 101 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~----~~---~~~~~~~d~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~D 101 (193)
..+.|+||||..+-.. +. ...++.++++++|+|++ +.+.++++..|+.++..+.. ....|+++|+||+|
T Consensus 207 ~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiD 286 (390)
T PRK12298 207 RSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKID 286 (390)
T ss_pred cEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCc
Confidence 4588999999743111 11 23477899999999998 45677778888888877532 23578889999999
Q ss_pred CCCCCCCCccCHHHHHHHHHhCC--CcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 102 LLQSGVPREVSEAEAKAFASQND--ILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 102 l~~~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
+... ..+ .+...++.+..+ .+++.+||+++.|+++++++|.+.+.+.
T Consensus 287 l~~~---~el-~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 287 LLDE---EEA-EERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred cCCh---HHH-HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 8641 222 233444555444 4789999999999999999999877553
No 197
>PRK10218 GTP-binding protein; Provisional
Probab=99.34 E-value=1.9e-11 Score=104.06 Aligned_cols=129 Identities=15% Similarity=0.103 Sum_probs=90.8
Q ss_pred CCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe
Q psy38 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV 92 (193)
Q Consensus 13 ~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 92 (193)
+++.|+++..+...+ +...+.+.+|||+|+.+|...+..+++.+|++|+|+|+++....+ ...++..+... ..|
T Consensus 49 E~erGiTi~~~~~~i-~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~~----gip 122 (607)
T PRK10218 49 EKERGITILAKNTAI-KWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFAY----GLK 122 (607)
T ss_pred cccCceEEEEEEEEE-ecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHHc----CCC
Confidence 456677787777777 667799999999999999999999999999999999998753222 23333333332 367
Q ss_pred EEEEeeCCCCCCCCCCCccCHHHHHHHHH-------hCCCcEEEecCCCCc----------CHHHHHHHHHHHH
Q psy38 93 FALVGCKLDLLQSGVPREVSEAEAKAFAS-------QNDILHFETSSRSGF----------QVENAFTAVTQEI 149 (193)
Q Consensus 93 iilv~nK~Dl~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~Sa~~~~----------~i~e~f~~i~~~i 149 (193)
+++|+||+|+....... ..++..++.. ...++++.+||.+|. ++..+|+.|++.+
T Consensus 123 ~IVviNKiD~~~a~~~~--vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 123 PIVVINKVDRPGARPDW--VVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred EEEEEECcCCCCCchhH--HHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 78999999986532111 1233333321 134789999999998 4777777666554
No 198
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.33 E-value=1.7e-11 Score=87.41 Aligned_cols=109 Identities=17% Similarity=0.155 Sum_probs=74.3
Q ss_pred cEEEEEEeeCCCcccccc--------chhhhccCccEEEEEEeCCChhHHhhHHHH-HHHHHHhcCCCCCeEEEEeeCCC
Q psy38 31 ARIKLQLWDTAGQERFRS--------ITKSYYRNSVGALLVYDITSRASFEHIPVW-MMEAKRHIEPHRPVFALVGCKLD 101 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~~--------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~-~~~i~~~~~~~~~piilv~nK~D 101 (193)
....+.+|||+|...... .....+..+|++++|+|++++ +.....+ ...+... ..|+++|+||+|
T Consensus 49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~--~~~~~~~~~~~~~~~----~~~~iiv~nK~D 122 (168)
T cd04163 49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEP--IGEGDEFILELLKKS----KTPVILVLNKID 122 (168)
T ss_pred CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCc--cCchHHHHHHHHHHh----CCCEEEEEEchh
Confidence 357789999999754322 234467889999999999986 2233233 3333332 468889999999
Q ss_pred CCCCCCCCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHHHHH
Q psy38 102 LLQSGVPREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 102 l~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
+... .....+....+....+ .+++++|++++.|++++|.+|.+.
T Consensus 123 l~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 123 LVKD---KEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred cccc---HHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 8631 2222333334444443 589999999999999999999764
No 199
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.31 E-value=5e-11 Score=90.71 Aligned_cols=117 Identities=20% Similarity=0.138 Sum_probs=76.4
Q ss_pred EEEEEEEecCCcEEEEEEeeCCCcccccc-------chhhhccCccEEEEEEeCCChh-HHhhHHHHHHH----------
Q psy38 20 FFARLVTMRDGARIKLQLWDTAGQERFRS-------ITKSYYRNSVGALLVYDITSRA-SFEHIPVWMME---------- 81 (193)
Q Consensus 20 ~~~~~~~~~~~~~~~l~l~D~~g~~~~~~-------~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~---------- 81 (193)
.....+.+ ++ ..+++||++|..+... ....+++++|++++|+|+++++ ..+.+...++.
T Consensus 37 ~~~g~~~~-~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~ 113 (233)
T cd01896 37 CVPGVLEY-KG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPP 113 (233)
T ss_pred ceEEEEEE-CC--eEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCC
Confidence 33444555 55 6789999999754321 2245788999999999998755 33333222211
Q ss_pred ------------------------------HHHhcC------------------------CCCCeEEEEeeCCCCCCCCC
Q psy38 82 ------------------------------AKRHIE------------------------PHRPVFALVGCKLDLLQSGV 107 (193)
Q Consensus 82 ------------------------------i~~~~~------------------------~~~~piilv~nK~Dl~~~~~ 107 (193)
+....+ ..-.|+++|+||+|+.
T Consensus 114 ~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~---- 189 (233)
T cd01896 114 NITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLI---- 189 (233)
T ss_pred eEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCC----
Confidence 111100 1125889999999984
Q ss_pred CCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 108 PREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 108 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
..++...++.. ..++++||+++.|++++|+.+.+.+
T Consensus 190 ----~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 190 ----SIEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred ----CHHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 33444455543 4689999999999999999998753
No 200
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.30 E-value=7.4e-11 Score=94.45 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=92.2
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCC----------hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS----------RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL 102 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 102 (193)
+.+.+||++|+...++.|..++.+++++|||.|+++ ...+.+....+..+.......+.|++|++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 678999999999999999999999999999999996 2467777777788887655567899999999998
Q ss_pred CCCC-CC-----------CccCHHHHHHHHHh-----------CCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38 103 LQSG-VP-----------REVSEAEAKAFASQ-----------NDILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154 (193)
Q Consensus 103 ~~~~-~~-----------~~v~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~ 154 (193)
...- .. .....+.+.+|... ..+.++.++|.+..++..+|..+.+.|+....
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l 338 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL 338 (342)
T ss_pred HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence 4310 00 00123344443322 22566789999999999999999998887653
No 201
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.30 E-value=6.8e-12 Score=91.66 Aligned_cols=128 Identities=14% Similarity=0.131 Sum_probs=77.0
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcc----------ccccchhhhccC---ccEEEEE
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQE----------RFRSITKSYYRN---SVGALLV 63 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~----------~~~~~~~~~~~~---~d~~i~v 63 (193)
+||+|++ ...+.++.|.+.....+.. ++ .+.+|||+|.. .+..+...+++. ++++++|
T Consensus 32 Stlin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~v 107 (179)
T TIGR03598 32 SSLINALTNRKKLARTSKTPGRTQLINFFEV-ND---GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLL 107 (179)
T ss_pred HHHHHHHhCCCCcccccCCCCcceEEEEEEe-CC---cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEE
Confidence 3667776 1234556654444444444 32 58899999952 233344455553 5799999
Q ss_pred EeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC--CcEEEecCCCCcCHH
Q psy38 64 YDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND--ILHFETSSRSGFQVE 139 (193)
Q Consensus 64 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~ 139 (193)
+|.+++.+..+. .++..+.. ...|+++|+||+|+.... ......++..+.....+ ..++++||++|.|++
T Consensus 108 vd~~~~~~~~~~-~~~~~~~~----~~~pviiv~nK~D~~~~~-~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 108 MDIRHPLKELDL-EMLEWLRE----RGIPVLIVLTKADKLKKS-ELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred ecCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECcccCCHH-HHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 999875444433 22222322 247899999999985411 01112344444555543 489999999999974
No 202
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.30 E-value=2.3e-11 Score=100.31 Aligned_cols=126 Identities=14% Similarity=0.080 Sum_probs=79.2
Q ss_pred CCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe
Q psy38 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV 92 (193)
Q Consensus 13 ~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 92 (193)
.+.+.++.....+.. ..+.+.||||+|+++|.......+..+|++++|+|++++.++.....+...+.... ...+
T Consensus 67 ~rG~T~d~~~~~~~~---~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~ 141 (425)
T PRK12317 67 ERGVTIDLAHKKFET---DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQ 141 (425)
T ss_pred hcCccceeeeEEEec---CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCe
Confidence 344444555555544 45789999999998876655556789999999999987322322222222222222 2357
Q ss_pred EEEEeeCCCCCCCCCCC-ccCHHHHHHHHHhCC-----CcEEEecCCCCcCHHHHHH
Q psy38 93 FALVGCKLDLLQSGVPR-EVSEAEAKAFASQND-----ILHFETSSRSGFQVENAFT 143 (193)
Q Consensus 93 iilv~nK~Dl~~~~~~~-~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~e~f~ 143 (193)
+++|+||+|+......+ ....++..++....+ ++++.+||++|.|+++.+.
T Consensus 142 iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 142 LIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred EEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 88999999986410000 112244555555544 4799999999999998654
No 203
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.29 E-value=4.4e-11 Score=104.52 Aligned_cols=135 Identities=14% Similarity=0.077 Sum_probs=92.5
Q ss_pred eeeeec---cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccc----------hhhhc--cCccEEEEEEeCC
Q psy38 3 TLLYLY---IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSI----------TKSYY--RNSVGALLVYDIT 67 (193)
Q Consensus 3 sll~r~---~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~----------~~~~~--~~~d~~i~v~d~~ 67 (193)
||+|++ .....+..|.+...+.-.+ ......+.+||+||..++... ...++ ..+|++++|+|.+
T Consensus 18 TLfN~Ltg~~~~vgn~pGvTve~k~g~~-~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat 96 (772)
T PRK09554 18 TLFNQLTGARQRVGNWAGVTVERKEGQF-STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDAS 96 (772)
T ss_pred HHHHHHhCCCCccCCCCCceEeeEEEEE-EcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCC
Confidence 566666 2222233344444444344 445578899999998766431 22343 4799999999998
Q ss_pred ChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 68 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
+.+. ..+|..++.+. +.|+++|+||.|+.+ .+.+ ..+..++.+..+++++.+||.++.|++++.+.+.+
T Consensus 97 ~ler---~l~l~~ql~e~----giPvIvVlNK~Dl~~---~~~i-~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~ 165 (772)
T PRK09554 97 NLER---NLYLTLQLLEL----GIPCIVALNMLDIAE---KQNI-RIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDR 165 (772)
T ss_pred cchh---hHHHHHHHHHc----CCCEEEEEEchhhhh---ccCc-HHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHH
Confidence 7543 23455555543 478999999999864 2333 34566788889999999999999999999998877
Q ss_pred HH
Q psy38 148 EI 149 (193)
Q Consensus 148 ~i 149 (193)
..
T Consensus 166 ~~ 167 (772)
T PRK09554 166 HQ 167 (772)
T ss_pred hh
Confidence 54
No 204
>KOG0462|consensus
Probab=99.29 E-value=4.4e-11 Score=98.07 Aligned_cols=125 Identities=20% Similarity=0.230 Sum_probs=90.5
Q ss_pred eeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEe
Q psy38 18 VDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVG 97 (193)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 97 (193)
+...+..+-+.+|+.+.+.++||||+.+|..-....+.-|+++|++.|++...--+.+..++..+.. +..+|.|.
T Consensus 110 IkaQtasify~~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~-----~L~iIpVl 184 (650)
T KOG0462|consen 110 IKAQTASIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA-----GLAIIPVL 184 (650)
T ss_pred EEeeeeEEEEEcCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc-----CCeEEEee
Confidence 3444445555478889999999999999988888889999999999999886544555554444443 35677999
Q ss_pred eCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 98 CKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 98 nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
||+|++.+.+ +-...+..++......+++.+||++|.|+.+++++|++.+
T Consensus 185 NKIDlp~adp--e~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 185 NKIDLPSADP--ERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred eccCCCCCCH--HHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhC
Confidence 9999987421 1112233333333445899999999999999988888754
No 205
>PRK00089 era GTPase Era; Reviewed
Probab=99.28 E-value=2.5e-11 Score=95.39 Aligned_cols=110 Identities=16% Similarity=0.167 Sum_probs=74.9
Q ss_pred EEEEEeeCCCccccc--------cchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 33 IKLQLWDTAGQERFR--------SITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~--------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
..+.||||+|..... ......+.++|++++|+|+++. +.....++..... ....|+++|+||+|+..
T Consensus 53 ~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~--~~~~~~~i~~~l~---~~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 53 AQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEK--IGPGDEFILEKLK---KVKTPVILVLNKIDLVK 127 (292)
T ss_pred ceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCC--CChhHHHHHHHHh---hcCCCEEEEEECCcCCC
Confidence 789999999975422 1223467899999999999872 2223333322222 22478899999999963
Q ss_pred CCCCCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 105 SGVPREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 105 ~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
. ..........+....+ ..++.+||+++.|++++++++.+.+.
T Consensus 128 ~---~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 128 D---KEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred C---HHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence 1 2222334445555444 58999999999999999999988753
No 206
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.27 E-value=1.3e-10 Score=93.97 Aligned_cols=113 Identities=22% Similarity=0.262 Sum_probs=86.3
Q ss_pred cCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCC
Q psy38 28 RDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGV 107 (193)
Q Consensus 28 ~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 107 (193)
.+|..+.++++||||+.+|.--....+.-|.+++++.|++..-.-+.+.+.+..+.. +.-|+.|.||+||+.+.
T Consensus 71 ~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~-----~LeIiPViNKIDLP~Ad- 144 (603)
T COG0481 71 KDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPAAD- 144 (603)
T ss_pred CCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc-----CcEEEEeeecccCCCCC-
Confidence 367899999999999999887777888899999999999986555555555554544 46788999999997741
Q ss_pred CCccCHHHHHHHHHhCCC---cEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 108 PREVSEAEAKAFASQNDI---LHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 108 ~~~v~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
+..-..+...-.|+ ..+.+||++|.||++++++|++.+-
T Consensus 145 ----pervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 145 ----PERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred ----HHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCC
Confidence 22223344444554 5788999999999999998887653
No 207
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.25 E-value=4.5e-11 Score=88.06 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=78.1
Q ss_pred CcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCC
Q psy38 30 GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPR 109 (193)
Q Consensus 30 ~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~ 109 (193)
.....+.|+||||+..|.......+..+|++|+|+|+.+..... ....+..+... ..|+++|.||+|+.... ..
T Consensus 67 ~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~----~~p~ivvlNK~D~~~~~-~~ 140 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILREL----GIPIIVVLNKMDLIEKE-LE 140 (188)
T ss_dssp ESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHT----T-SEEEEEETCTSSHHH-HH
T ss_pred ccccceeecccccccceeecccceecccccceeeeecccccccc-ccccccccccc----ccceEEeeeeccchhhh-HH
Confidence 45588999999999998888888899999999999998753322 23333334433 36788999999985310 00
Q ss_pred ccCHHHHHHHHHhC------CCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 110 EVSEAEAKAFASQN------DILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 110 ~v~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
.+..+....+.+.. .++++.+||.+|.|++++++.+.+.+
T Consensus 141 ~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 141 EIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred HHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 01111111333332 24799999999999999999988753
No 208
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.24 E-value=4.6e-11 Score=97.93 Aligned_cols=114 Identities=18% Similarity=0.137 Sum_probs=77.8
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV 111 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v 111 (193)
...+.+||++|+++|...+...+..+|++++|+|+++..........+..+.. ....++++|+||+|+.+... ...
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~---~gi~~iIVvvNK~Dl~~~~~-~~~ 154 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI---IGIKNIVIVQNKIDLVSKEK-ALE 154 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH---cCCCeEEEEEEccccCCHHH-HHH
Confidence 36789999999999988777788889999999999864211222222222222 12356889999999864200 011
Q ss_pred CHHHHHHHHHhC---CCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 112 SEAEAKAFASQN---DILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 112 ~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
..++..++.... +++++.+||++|.|+++++++|...+
T Consensus 155 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 155 NYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 123334444432 57899999999999999999998754
No 209
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.20 E-value=1e-10 Score=95.98 Aligned_cols=109 Identities=18% Similarity=0.183 Sum_probs=73.0
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh----hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR----ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP 108 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~ 108 (193)
..+.||||+|+++|..........+|++++|+|++++ ++.+.+. .+.. ....|+++|+||+|+.+.. .
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l~~---~~i~~iiVVlNK~Dl~~~~-~ 156 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----ALDI---IGIKNIVIVQNKIDLVSKE-R 156 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HHHH---cCCCcEEEEEEeeccccch-h
Confidence 6789999999988765444445567999999999864 2333222 1221 1224678999999986520 0
Q ss_pred CccCHHHHHHHHHh---CCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 109 REVSEAEAKAFASQ---NDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 109 ~~v~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
.....++...+++. .+++++.+||++|.|++++|++|...+
T Consensus 157 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 157 ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 00112334444433 247899999999999999999988765
No 210
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.19 E-value=1.8e-10 Score=86.19 Aligned_cols=121 Identities=18% Similarity=0.109 Sum_probs=74.2
Q ss_pred CcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeE
Q psy38 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVF 93 (193)
Q Consensus 14 pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 93 (193)
+.+..+.....+.. ++ ..+.||||+|+++|.......++.+|++|+|+|+++...-+ ...++. +.... ..+++
T Consensus 61 rg~T~~~~~~~~~~-~~--~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~-~~~~~--~~~~i 133 (208)
T cd04166 61 QGITIDVAYRYFST-PK--RKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSY-ILSLL--GIRHV 133 (208)
T ss_pred CCcCeecceeEEec-CC--ceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHH-HHHHc--CCCcE
Confidence 33334444445544 44 56789999999887665666789999999999998753111 112112 22221 22467
Q ss_pred EEEeeCCCCCCCCCCC-ccCHHHHHHHHHhCCC---cEEEecCCCCcCHHHH
Q psy38 94 ALVGCKLDLLQSGVPR-EVSEAEAKAFASQNDI---LHFETSSRSGFQVENA 141 (193)
Q Consensus 94 ilv~nK~Dl~~~~~~~-~v~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~e~ 141 (193)
++|+||.|+....... .....+..++....++ +++.+||++|.|+.+.
T Consensus 134 IvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 134 VVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred EEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 7899999986410000 0112334455555553 5899999999999753
No 211
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.16 E-value=7.9e-10 Score=84.35 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=58.9
Q ss_pred EEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeC
Q psy38 20 FFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCK 99 (193)
Q Consensus 20 ~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 99 (193)
+......+ ......+.+|||+|+.+|...+..+++.+|++++|+|+++.... ....|+..+... ..|+++|+||
T Consensus 52 i~~~~~~~-~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~----~~P~iivvNK 125 (237)
T cd04168 52 IFSAVASF-QWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL----NIPTIIFVNK 125 (237)
T ss_pred eeeeeEEE-EECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc----CCCEEEEEEC
Confidence 33344444 44568899999999999988888999999999999999875432 234455544432 4788899999
Q ss_pred CCCCC
Q psy38 100 LDLLQ 104 (193)
Q Consensus 100 ~Dl~~ 104 (193)
.|+..
T Consensus 126 ~D~~~ 130 (237)
T cd04168 126 IDRAG 130 (237)
T ss_pred ccccC
Confidence 99874
No 212
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.15 E-value=1.6e-10 Score=82.57 Aligned_cols=127 Identities=19% Similarity=0.172 Sum_probs=76.4
Q ss_pred CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccc----------cccchhhhcc---CccEEEEEEeCCChh--HHhh
Q psy38 10 QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQER----------FRSITKSYYR---NSVGALLVYDITSRA--SFEH 74 (193)
Q Consensus 10 ~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----------~~~~~~~~~~---~~d~~i~v~d~~~~~--s~~~ 74 (193)
..+.++.+.+.....+.. ++ .+.+|||+|... +......++. +.+++++++|.+... ....
T Consensus 26 ~~~~~~~~~t~~~~~~~~-~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~ 101 (170)
T cd01876 26 ARTSKTPGKTQLINFFNV-ND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLE 101 (170)
T ss_pred eeecCCCCcceeEEEEEc-cC---eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHH
Confidence 345555555444444444 33 789999999432 3333444444 457888999987652 2222
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH--hCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS--QNDILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 75 ~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
+..|+... ..|+++|+||+|+.... .............. ....+++.+||+++.++.+++++|.+.
T Consensus 102 ~~~~l~~~-------~~~vi~v~nK~D~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 102 MLDWLEEL-------GIPFLVVLTKADKLKKS-ELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHc-------CCCEEEEEEchhcCChH-HHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 33443322 36888999999985411 01111122222222 234689999999999999999999874
No 213
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.15 E-value=2.5e-10 Score=86.12 Aligned_cols=116 Identities=17% Similarity=0.152 Sum_probs=71.4
Q ss_pred eeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhH---Hh---hHHHHHHHHHHhcCCCCC
Q psy38 18 VDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS---FE---HIPVWMMEAKRHIEPHRP 91 (193)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~ 91 (193)
.+.....+.. + ...+.+|||+|+..|.......+..+|++|+|+|+++... |. .....+... .. ....
T Consensus 65 ~d~~~~~~~~-~--~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~ 138 (219)
T cd01883 65 IDVGLAKFET-E--KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RT--LGVK 138 (219)
T ss_pred eecceEEEee-C--CeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HH--cCCC
Confidence 3444455555 4 4778999999998877666667788999999999987421 11 122222222 22 2236
Q ss_pred eEEEEeeCCCCCCCCCCCc---cCHHHHHHHHHhC-----CCcEEEecCCCCcCHH
Q psy38 92 VFALVGCKLDLLQSGVPRE---VSEAEAKAFASQN-----DILHFETSSRSGFQVE 139 (193)
Q Consensus 92 piilv~nK~Dl~~~~~~~~---v~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~ 139 (193)
|+++|+||.|+........ -..++...+.... +++++.+||++|.|++
T Consensus 139 ~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 139 QLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred eEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 8889999999963100000 0011222233333 3579999999999987
No 214
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.15 E-value=1.3e-10 Score=98.95 Aligned_cols=100 Identities=24% Similarity=0.346 Sum_probs=78.8
Q ss_pred EEEeeCCCccccccchhhhccCccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc
Q psy38 35 LQLWDTAGQERFRSITKSYYRNSVGALLVYDITS---RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV 111 (193)
Q Consensus 35 l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v 111 (193)
+.||||||++.|..++...+..+|++|+|+|+++ ++++..+.. +.. ...|+++++||+|+..
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~----~~vpiIvviNK~D~~~------- 137 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR----RKTPFVVAANKIDRIP------- 137 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH----cCCCEEEEEECcCCch-------
Confidence 6899999999999988888999999999999987 566655432 221 2478999999999732
Q ss_pred CHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcC
Q psy38 112 SEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQS 155 (193)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~ 155 (193)
.++...+.+++++++.++.++.+.|.+++..+......
T Consensus 138 ------~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~ 175 (586)
T PRK04004 138 ------GWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSE 175 (586)
T ss_pred ------hhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 24444577888999999999999999998887666543
No 215
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.13 E-value=6.7e-10 Score=99.11 Aligned_cols=106 Identities=22% Similarity=0.240 Sum_probs=72.2
Q ss_pred EEEeeCCCccccccchhhhccCccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCC-C-
Q psy38 35 LQLWDTAGQERFRSITKSYYRNSVGALLVYDITS---RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP-R- 109 (193)
Q Consensus 35 l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~-~- 109 (193)
+.||||+|++.|..+....+..+|++++|+|+++ +.+++.+. .+.. .+.|+++|+||+|+...... .
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~----~~iPiIVViNKiDL~~~~~~~~~ 599 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ----YKTPFVVAANKIDLIPGWNISED 599 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH----cCCCEEEEEECCCCccccccccc
Confidence 7999999999998888888889999999999986 44554432 2222 14689999999998532110 0
Q ss_pred -c----cC------HHHHH--------HHHH------------h--CCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 110 -E----VS------EAEAK--------AFAS------------Q--NDILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 110 -~----v~------~~~~~--------~~~~------------~--~~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
. +. ..+.. +++. . ..++++.+||++|.|++++..++...
T Consensus 600 ~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 600 EPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 0 00 00000 0111 1 13589999999999999999887654
No 216
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.12 E-value=2.7e-10 Score=80.95 Aligned_cols=114 Identities=15% Similarity=0.183 Sum_probs=76.6
Q ss_pred eeEEEEEEEecCCcEEEEEEeeCCCcccccc------chhhhc--cCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCC
Q psy38 18 VDFFARLVTMRDGARIKLQLWDTAGQERFRS------ITKSYY--RNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPH 89 (193)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 89 (193)
++...-.+.+ ++ ..+.++|+||.-.... ....++ ...|++|.|.|+++.+ .-.+...++.+.
T Consensus 35 v~~~~g~~~~-~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~---r~l~l~~ql~e~---- 104 (156)
T PF02421_consen 35 VEKKEGIFKL-GD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLE---RNLYLTLQLLEL---- 104 (156)
T ss_dssp SEEEEEEEEE-TT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHH---HHHHHHHHHHHT----
T ss_pred eeeeeEEEEe-cC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHH---HHHHHHHHHHHc----
Confidence 5677777777 55 6788999999533222 223343 5899999999998743 233445555654
Q ss_pred CCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHH
Q psy38 90 RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAV 145 (193)
Q Consensus 90 ~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i 145 (193)
..|+++|.||+|+... +.+.. ....+.+..+++++.+||.++.|+++++++|
T Consensus 105 g~P~vvvlN~~D~a~~---~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 105 GIPVVVVLNKMDEAER---KGIEI-DAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp TSSEEEEEETHHHHHH---TTEEE--HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred CCCEEEEEeCHHHHHH---cCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 3789999999998541 22222 2456777789999999999999999999875
No 217
>KOG0082|consensus
Probab=99.09 E-value=6.3e-10 Score=88.10 Aligned_cols=125 Identities=15% Similarity=0.125 Sum_probs=94.1
Q ss_pred cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh----------hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCC
Q psy38 31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR----------ASFEHIPVWMMEAKRHIEPHRPVFALVGCKL 100 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 100 (193)
+...++++|+|||..-+..|.+.+.+++++|||.++++- ..+.+....++.|.+..-..+.++||+.||.
T Consensus 193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~ 272 (354)
T KOG0082|consen 193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKK 272 (354)
T ss_pred CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecH
Confidence 337889999999999999999999999999999999862 2344556677888877667789999999999
Q ss_pred CCCCC-CCC-----------CccCHHHHHHHHHh----------CCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcC
Q psy38 101 DLLQS-GVP-----------REVSEAEAKAFASQ----------NDILHFETSSRSGFQVENAFTAVTQEIYNRVQS 155 (193)
Q Consensus 101 Dl~~~-~~~-----------~~v~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~ 155 (193)
||-++ ... ..-..+++..+... ..+.+..++|.+..+|+.+|.++.+.|+....+
T Consensus 273 DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nlk 349 (354)
T KOG0082|consen 273 DLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNLK 349 (354)
T ss_pred HHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHHH
Confidence 98432 100 11234444444332 235677889999999999999999999886543
No 218
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=2.8e-09 Score=87.67 Aligned_cols=119 Identities=14% Similarity=0.108 Sum_probs=83.2
Q ss_pred eEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcCCCCCeEEE
Q psy38 19 DFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS---RASFEHIPVWMMEAKRHIEPHRPVFAL 95 (193)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piil 95 (193)
.+.-..+....+..-.+.|.|||||+-|..|+..-..=+|++|+|.++++ |++.+.+ ... ...+.|+++
T Consensus 41 hIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI-------~ha-k~a~vP~iV 112 (509)
T COG0532 41 HIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAI-------NHA-KAAGVPIVV 112 (509)
T ss_pred EeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHH-------HHH-HHCCCCEEE
Confidence 34444445411233568899999999999999888889999999999998 4454443 222 234689999
Q ss_pred EeeCCCCCCCCCCCccCHHHHHHHHHhCC---------CcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 96 VGCKLDLLQSGVPREVSEAEAKAFASQND---------ILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 96 v~nK~Dl~~~~~~~~v~~~~~~~~~~~~~---------~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
+.||+|..+. .......-..++| ..++.+||++|.|+++++..++-..-.
T Consensus 113 AiNKiDk~~~------np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev 171 (509)
T COG0532 113 AINKIDKPEA------NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAEV 171 (509)
T ss_pred EEecccCCCC------CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHHH
Confidence 9999998752 2222222222222 468899999999999999988765433
No 219
>KOG0077|consensus
Probab=99.07 E-value=1.3e-10 Score=81.65 Aligned_cols=136 Identities=18% Similarity=0.245 Sum_probs=100.4
Q ss_pred eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38 3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW 78 (193)
Q Consensus 3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 78 (193)
+|+|.+ ...+.||.- -.+..+.+ .| +.++.+|.+|+..-+..|+.|+..+|++++.+|+-+.+.|.+.+.-
T Consensus 35 TLLHMLKdDrl~qhvPTlH--PTSE~l~I-g~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~e 109 (193)
T KOG0077|consen 35 TLLHMLKDDRLGQHVPTLH--PTSEELSI-GG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKE 109 (193)
T ss_pred hHHHHHccccccccCCCcC--CChHHhee-cC--ceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHH
Confidence 455555 234555542 11234455 55 8899999999999999999999999999999999999999999888
Q ss_pred HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHH------HHHHhCC-----------CcEEEecCCCCcCHHHH
Q psy38 79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAK------AFASQND-----------ILHFETSSRSGFQVENA 141 (193)
Q Consensus 79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~------~~~~~~~-----------~~~~~~Sa~~~~~i~e~ 141 (193)
++.+.........|+++.+||+|.+.. +++++.+ +++...+ +..|.||...+.+-.+.
T Consensus 110 ld~ll~~e~la~vp~lilgnKId~p~a-----~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~ 184 (193)
T KOG0077|consen 110 LDALLSDESLATVPFLILGNKIDIPYA-----ASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEG 184 (193)
T ss_pred HHHHHhHHHHhcCcceeecccccCCCc-----ccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCcccee
Confidence 888877665677999999999999763 2333322 1222111 35788999999999999
Q ss_pred HHHHHHH
Q psy38 142 FTAVTQE 148 (193)
Q Consensus 142 f~~i~~~ 148 (193)
|.|+...
T Consensus 185 fkwl~qy 191 (193)
T KOG0077|consen 185 FKWLSQY 191 (193)
T ss_pred eeehhhh
Confidence 9988654
No 220
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.06 E-value=1.6e-09 Score=87.90 Aligned_cols=132 Identities=20% Similarity=0.187 Sum_probs=92.3
Q ss_pred eeeeec-------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccch--------hhhccCccEEEEEEeCC
Q psy38 3 TLLYLY-------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSIT--------KSYYRNSVGALLVYDIT 67 (193)
Q Consensus 3 sll~r~-------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~--------~~~~~~~d~~i~v~d~~ 67 (193)
||||.+ ..+..-|. .|.....+.+ +| +.+++.||+|.++..... ...++++|.+++|+|.+
T Consensus 232 SLLNaL~~~d~AIVTdI~GTT-RDviee~i~i-~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~ 307 (454)
T COG0486 232 SLLNALLGRDRAIVTDIAGTT-RDVIEEDINL-NG--IPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDAS 307 (454)
T ss_pred HHHHHHhcCCceEecCCCCCc-cceEEEEEEE-CC--EEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 566666 44555555 6899999999 88 778899999987644332 45678999999999999
Q ss_pred ChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 68 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
.+.+-.+. . +.. ..+.+.|+++|.||.||..... . . .+....+.+++.+|++++.|++.+.+.|..
T Consensus 308 ~~~~~~d~-~----~~~-~~~~~~~~i~v~NK~DL~~~~~---~--~---~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~ 373 (454)
T COG0486 308 QPLDKEDL-A----LIE-LLPKKKPIIVVLNKADLVSKIE---L--E---SEKLANGDAIISISAKTGEGLDALREAIKQ 373 (454)
T ss_pred CCCchhhH-H----HHH-hcccCCCEEEEEechhcccccc---c--c---hhhccCCCceEEEEecCccCHHHHHHHHHH
Confidence 85222221 1 111 2344678899999999976311 1 1 111123447899999999999999999988
Q ss_pred HHHHH
Q psy38 148 EIYNR 152 (193)
Q Consensus 148 ~i~~~ 152 (193)
.+...
T Consensus 374 ~~~~~ 378 (454)
T COG0486 374 LFGKG 378 (454)
T ss_pred HHhhc
Confidence 77766
No 221
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.06 E-value=1.5e-09 Score=88.83 Aligned_cols=108 Identities=17% Similarity=0.135 Sum_probs=66.9
Q ss_pred EEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38 24 LVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL 103 (193)
Q Consensus 24 ~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 103 (193)
.+.+ +.....+.||||+|+++|..........+|++++|+|+++...-+. ...+..+... ..+++++++||+|+.
T Consensus 67 ~~~~-~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~---gi~~iIvvvNK~Dl~ 141 (394)
T TIGR00485 67 HVEY-ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQV---GVPYIVVFLNKCDMV 141 (394)
T ss_pred EEEE-cCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCEEEEEEEecccC
Confidence 3444 4455778899999999886655555677899999999987322221 2222223322 224455789999986
Q ss_pred CCCCCCccCHHHHHHHHHhCC-----CcEEEecCCCCc
Q psy38 104 QSGVPREVSEAEAKAFASQND-----ILHFETSSRSGF 136 (193)
Q Consensus 104 ~~~~~~~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~ 136 (193)
+.........++..+++...+ ++++.+||.++.
T Consensus 142 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 142 DDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 420000111234556666554 689999999875
No 222
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.04 E-value=1.3e-09 Score=81.77 Aligned_cols=70 Identities=24% Similarity=0.245 Sum_probs=54.8
Q ss_pred CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38 29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL 103 (193)
Q Consensus 29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 103 (193)
++..+.+.+|||+|+.+|......++..+|++++|+|+++..++.. ..|+..... ...|+++|+||+|+.
T Consensus 67 ~~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 67 KGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred CCCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 3567899999999999998888889999999999999987655432 344444432 237888999999974
No 223
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.02 E-value=1.8e-09 Score=79.61 Aligned_cols=93 Identities=18% Similarity=0.186 Sum_probs=64.6
Q ss_pred cccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHH-----
Q psy38 46 FRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFA----- 120 (193)
Q Consensus 46 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~----- 120 (193)
+..++..+++++|++++|+|++++.. .|...+... ....|+++|+||+|+.. ..........+.
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~--~~~~~~ilV~NK~Dl~~----~~~~~~~~~~~~~~~~~ 92 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF--GGNNPVILVGNKIDLLP----KDKNLVRIKNWLRAKAA 92 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh--cCCCcEEEEEEchhcCC----CCCCHHHHHHHHHHHHH
Confidence 46778889999999999999987531 122233222 23478889999999864 222333333333
Q ss_pred HhCCC---cEEEecCCCCcCHHHHHHHHHHHH
Q psy38 121 SQNDI---LHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 121 ~~~~~---~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
...+. .++.+||+++.|+++++.++.+.+
T Consensus 93 ~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 93 AGLGLKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred hhcCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 22333 689999999999999999998865
No 224
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.00 E-value=1.4e-09 Score=90.04 Aligned_cols=108 Identities=15% Similarity=0.097 Sum_probs=73.7
Q ss_pred CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHh-------hHHHHHHHHHHhcCCCCCeEEEEeeCCC
Q psy38 29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE-------HIPVWMMEAKRHIEPHRPVFALVGCKLD 101 (193)
Q Consensus 29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~i~~~~~~~~~piilv~nK~D 101 (193)
......+.+.|++|+++|.......+..+|++|+|+|+++. .|+ .....+..+.. ...+++++++||.|
T Consensus 81 ~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD 156 (447)
T PLN00043 81 ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMD 156 (447)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEccc
Confidence 44567889999999999988888889999999999999862 232 23332222222 22346788999999
Q ss_pred CCCCCCCCc---cCHHHHHHHHHhCC-----CcEEEecCCCCcCHHH
Q psy38 102 LLQSGVPRE---VSEAEAKAFASQND-----ILHFETSSRSGFQVEN 140 (193)
Q Consensus 102 l~~~~~~~~---v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~e 140 (193)
+........ -..++...++++.+ ++++.+||.+|.|+.+
T Consensus 157 ~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 157 ATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 852100000 11345666777665 5799999999999864
No 225
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.97 E-value=6.6e-09 Score=87.63 Aligned_cols=82 Identities=20% Similarity=0.137 Sum_probs=58.0
Q ss_pred eeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEE
Q psy38 17 GVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALV 96 (193)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv 96 (193)
|+.+......+ +...+.+.+|||+|+.+|......++..+|++|+|+|+++...- ....++.... ..+.|++++
T Consensus 64 giSi~~~~~~~-~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~----~~~iPiiv~ 137 (526)
T PRK00741 64 GISVTSSVMQF-PYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCR----LRDTPIFTF 137 (526)
T ss_pred CCceeeeeEEE-EECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHH----hcCCCEEEE
Confidence 33444444444 44558899999999999887777788999999999999874211 2234443333 235789999
Q ss_pred eeCCCCCC
Q psy38 97 GCKLDLLQ 104 (193)
Q Consensus 97 ~nK~Dl~~ 104 (193)
+||.|+..
T Consensus 138 iNK~D~~~ 145 (526)
T PRK00741 138 INKLDRDG 145 (526)
T ss_pred EECCcccc
Confidence 99999864
No 226
>PRK12736 elongation factor Tu; Reviewed
Probab=98.97 E-value=6.1e-09 Score=85.17 Aligned_cols=100 Identities=18% Similarity=0.176 Sum_probs=64.4
Q ss_pred CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe-EEEEeeCCCCCCCCC
Q psy38 29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV-FALVGCKLDLLQSGV 107 (193)
Q Consensus 29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~ 107 (193)
+.....+.|+||+|+++|..........+|++++|+|++....-+ ...++..+... ..| +|++.||+|+.++
T Consensus 71 ~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~----g~~~~IvviNK~D~~~~-- 143 (394)
T PRK12736 71 ETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV----GVPYLVVFLNKVDLVDD-- 143 (394)
T ss_pred cCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc----CCCEEEEEEEecCCcch--
Confidence 334467789999999988765566667899999999998632111 22233333332 245 6789999998641
Q ss_pred CCccC---HHHHHHHHHhCC-----CcEEEecCCCCc
Q psy38 108 PREVS---EAEAKAFASQND-----ILHFETSSRSGF 136 (193)
Q Consensus 108 ~~~v~---~~~~~~~~~~~~-----~~~~~~Sa~~~~ 136 (193)
.... .++..++....+ ++++.+||.+|.
T Consensus 144 -~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 144 -EELLELVEMEVRELLSEYDFPGDDIPVIRGSALKAL 179 (394)
T ss_pred -HHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccc
Confidence 1111 234445554443 589999999984
No 227
>KOG1145|consensus
Probab=98.97 E-value=9.3e-09 Score=84.76 Aligned_cols=115 Identities=16% Similarity=0.091 Sum_probs=83.5
Q ss_pred EEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh---hHHhhHHHHHHHHHHhcCCCCCeEEEE
Q psy38 20 FFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR---ASFEHIPVWMMEAKRHIEPHRPVFALV 96 (193)
Q Consensus 20 ~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~piilv 96 (193)
+.--.+.+++|+ .+.|.||||+.-|..|+..-..-+|++++|..++|. ++.+. |.. ....+.|++++
T Consensus 190 IGAF~V~~p~G~--~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~Ea-------Ikh-Ak~A~VpiVvA 259 (683)
T KOG1145|consen 190 IGAFTVTLPSGK--SITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEA-------IKH-AKSANVPIVVA 259 (683)
T ss_pred eceEEEecCCCC--EEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHH-------HHH-HHhcCCCEEEE
Confidence 333455565774 467999999999999999888999999999999883 33333 332 23567999999
Q ss_pred eeCCCCCCCCCCCccCHHHHHHHHHh-------CC--CcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 97 GCKLDLLQSGVPREVSEAEAKAFASQ-------ND--ILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 97 ~nK~Dl~~~~~~~~v~~~~~~~~~~~-------~~--~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
.||+|.++. +.+....-... +| ++++.+||++|.|++.+-++++-++-
T Consensus 260 inKiDkp~a------~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 260 INKIDKPGA------NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAE 316 (683)
T ss_pred EeccCCCCC------CHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHH
Confidence 999997653 33333222222 22 57999999999999999998877643
No 228
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.96 E-value=3.9e-09 Score=79.68 Aligned_cols=69 Identities=28% Similarity=0.290 Sum_probs=53.9
Q ss_pred CcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38 30 GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL 103 (193)
Q Consensus 30 ~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 103 (193)
++.+.+.+|||+|+++|......+++.+|++++|+|+++..+.+.. ..+..... ...|+++|+||.|+.
T Consensus 70 ~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 70 GNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCCcc
Confidence 5578999999999999999899999999999999999886554432 22222222 236788999999985
No 229
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.96 E-value=1.4e-08 Score=79.72 Aligned_cols=86 Identities=14% Similarity=0.052 Sum_probs=66.7
Q ss_pred hccCccEEEEEEeCCChh-HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEec
Q psy38 53 YYRNSVGALLVYDITSRA-SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131 (193)
Q Consensus 53 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~S 131 (193)
.+.++|.+++|+|+.++. ++..+.+|+..+... +.|+++|+||+||..+ ........+....+.+++.+|
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~----~ip~iIVlNK~DL~~~-----~~~~~~~~~~~~~g~~v~~vS 145 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA----GIEPVIVLTKADLLDD-----EEEELELVEALALGYPVLAVS 145 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc----CCCEEEEEEHHHCCCh-----HHHHHHHHHHHhCCCeEEEEE
Confidence 488999999999999887 888888898877653 3677799999999541 111222334455788999999
Q ss_pred CCCCcCHHHHHHHHHH
Q psy38 132 SRSGFQVENAFTAVTQ 147 (193)
Q Consensus 132 a~~~~~i~e~f~~i~~ 147 (193)
|+++.|+++++..+..
T Consensus 146 A~~g~gi~~L~~~L~~ 161 (287)
T cd01854 146 AKTGEGLDELREYLKG 161 (287)
T ss_pred CCCCccHHHHHhhhcc
Confidence 9999999999988764
No 230
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.95 E-value=1e-08 Score=76.01 Aligned_cols=111 Identities=16% Similarity=0.121 Sum_probs=69.8
Q ss_pred EEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38 24 LVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL 103 (193)
Q Consensus 24 ~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 103 (193)
...+ .....++.|.||+|+..|.......+..+|++++|+|+.....-+ ....+..+.... .+++++|.||.|+.
T Consensus 57 ~~~~-~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~~---~~~iIvviNK~D~~ 131 (195)
T cd01884 57 HVEY-ETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQVG---VPYIVVFLNKADMV 131 (195)
T ss_pred eeEe-cCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHcC---CCcEEEEEeCCCCC
Confidence 3344 344567889999999888776677788999999999997642211 223333333321 23477899999985
Q ss_pred CCCCCCccCHHHHHHHHHhC-----CCcEEEecCCCCcCHH
Q psy38 104 QSGVPREVSEAEAKAFASQN-----DILHFETSSRSGFQVE 139 (193)
Q Consensus 104 ~~~~~~~v~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~ 139 (193)
.+........++..++.... +++++.+||.+|.|+.
T Consensus 132 ~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 132 DDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred CcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence 31000011123344554443 3689999999999863
No 231
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.93 E-value=1.4e-08 Score=76.90 Aligned_cols=106 Identities=17% Similarity=0.088 Sum_probs=68.2
Q ss_pred EEEEEeeCCCccccccchhhhcc--CccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCc
Q psy38 33 IKLQLWDTAGQERFRSITKSYYR--NSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPRE 110 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~ 110 (193)
..+.+.||||+++|.......+. .+|++++|+|+..... .....++..+... ..|+++|.||+|+.+. ..
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~----~ip~ivvvNK~D~~~~---~~ 155 (224)
T cd04165 84 KLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL----NIPVFVVVTKIDLAPA---NI 155 (224)
T ss_pred cEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCEEEEEECccccCH---HH
Confidence 56889999999988654333343 6899999999876432 2223344444433 3678899999998541 11
Q ss_pred c--CHHHHHHHHH--------------------------hCCCcEEEecCCCCcCHHHHHHHHH
Q psy38 111 V--SEAEAKAFAS--------------------------QNDILHFETSSRSGFQVENAFTAVT 146 (193)
Q Consensus 111 v--~~~~~~~~~~--------------------------~~~~~~~~~Sa~~~~~i~e~f~~i~ 146 (193)
. ...+..++.. ...+++|.+||.+|.|++++...|.
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 1 1112222222 1124899999999999999887664
No 232
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.93 E-value=5.4e-09 Score=74.61 Aligned_cols=94 Identities=12% Similarity=0.021 Sum_probs=63.5
Q ss_pred ccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCc
Q psy38 47 RSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126 (193)
Q Consensus 47 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~ 126 (193)
+.+.+..++++|++++|+|++++....+. .+...+. ..+.|+++|+||+|+... ... .....+....+.+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~----~~~~p~iiv~NK~Dl~~~---~~~--~~~~~~~~~~~~~ 72 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL----ELGKKLLIVLNKADLVPK---EVL--EKWKSIKESEGIP 72 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH----hCCCcEEEEEEhHHhCCH---HHH--HHHHHHHHhCCCc
Confidence 45677888899999999999876433321 2222121 224688899999998431 111 1111333445678
Q ss_pred EEEecCCCCcCHHHHHHHHHHHHH
Q psy38 127 HFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 127 ~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
++.+||+++.|+++++..+.+.+-
T Consensus 73 ~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 73 VVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEEEEccccccHHHHHHHHHHHHh
Confidence 999999999999999999987653
No 233
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.92 E-value=2.3e-08 Score=81.06 Aligned_cols=122 Identities=25% Similarity=0.160 Sum_probs=81.9
Q ss_pred eeEEEEEEEecCCcEEEEEEeeCCCccccccc-----------hhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhc
Q psy38 18 VDFFARLVTMRDGARIKLQLWDTAGQERFRSI-----------TKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHI 86 (193)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~-----------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 86 (193)
.|.....+.+ ++++ +.+.||+|-.+-... .-..+..+|++++|.|++.+.+-++. .+..+.
T Consensus 214 RD~I~~~~e~-~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~-----~ia~~i 285 (444)
T COG1160 214 RDSIDIEFER-DGRK--YVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDL-----RIAGLI 285 (444)
T ss_pred ccceeeeEEE-CCeE--EEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHH-----HHHHHH
Confidence 5777777777 7755 669999996542211 12356689999999999987655543 222222
Q ss_pred CCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh----C-CCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 87 EPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ----N-DILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 87 ~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~----~-~~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
.....++++|.||+|+.+. ...+.++.+..... . ..+.+.+||+++.+++++|.++....-
T Consensus 286 ~~~g~~~vIvvNKWDl~~~---~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 286 EEAGRGIVIVVNKWDLVEE---DEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred HHcCCCeEEEEEccccCCc---hhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence 2335788899999998662 22333333322222 2 358999999999999999999877543
No 234
>PRK00098 GTPase RsgA; Reviewed
Probab=98.92 E-value=4.5e-09 Score=82.86 Aligned_cols=86 Identities=19% Similarity=0.127 Sum_probs=63.8
Q ss_pred ccCccEEEEEEeCCChhHHhh-HHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecC
Q psy38 54 YRNSVGALLVYDITSRASFEH-IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132 (193)
Q Consensus 54 ~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa 132 (193)
..++|++++|+|++++.++.. +.+|+..+... +.|+++|+||+||..+ .. ............+++++.+||
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~----~ip~iIVlNK~DL~~~---~~-~~~~~~~~~~~~g~~v~~vSA 149 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN----GIKPIIVLNKIDLLDD---LE-EARELLALYRAIGYDVLELSA 149 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC----CCCEEEEEEhHHcCCC---HH-HHHHHHHHHHHCCCeEEEEeC
Confidence 489999999999988765544 46787766542 4677899999999531 11 122334555667889999999
Q ss_pred CCCcCHHHHHHHHHH
Q psy38 133 RSGFQVENAFTAVTQ 147 (193)
Q Consensus 133 ~~~~~i~e~f~~i~~ 147 (193)
+++.|+++++..+..
T Consensus 150 ~~g~gi~~L~~~l~g 164 (298)
T PRK00098 150 KEGEGLDELKPLLAG 164 (298)
T ss_pred CCCccHHHHHhhccC
Confidence 999999999988753
No 235
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.92 E-value=8.5e-09 Score=71.91 Aligned_cols=99 Identities=21% Similarity=0.149 Sum_probs=70.7
Q ss_pred EEeeCCCc----cccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc
Q psy38 36 QLWDTAGQ----ERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV 111 (193)
Q Consensus 36 ~l~D~~g~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v 111 (193)
.+.||||. ..+.........++|.++++.|++++.+.-.- .+... -..|+|-|.||+|+.. ...
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP-----~fa~~---f~~pvIGVITK~Dl~~----~~~ 106 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPP-----GFASM---FNKPVIGVITKIDLPS----DDA 106 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCc-----hhhcc---cCCCEEEEEECccCcc----chh
Confidence 46899984 23333334455689999999999986432110 11111 1368989999999973 234
Q ss_pred CHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38 112 SEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT 146 (193)
Q Consensus 112 ~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~ 146 (193)
..+.++++.+..|+ .+|++|+.+|+||+++.+.|-
T Consensus 107 ~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 107 NIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred hHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 66778888888888 789999999999999998863
No 236
>PRK12735 elongation factor Tu; Reviewed
Probab=98.91 E-value=1.2e-08 Score=83.44 Aligned_cols=114 Identities=16% Similarity=0.127 Sum_probs=70.9
Q ss_pred CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe-EEEEeeCCCCCCCCC
Q psy38 29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV-FALVGCKLDLLQSGV 107 (193)
Q Consensus 29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~ 107 (193)
+.....+.|+||||+++|.......+..+|++++|+|+.+...- ....++..+... ..| ++++.||+|+.++..
T Consensus 71 ~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~~----gi~~iivvvNK~Dl~~~~~ 145 (396)
T PRK12735 71 ETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV----GVPYIVVFLNKCDMVDDEE 145 (396)
T ss_pred cCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHHc----CCCeEEEEEEecCCcchHH
Confidence 33446788999999988876666777889999999999864222 222333333322 245 546899999864110
Q ss_pred CCccCHHHHHHHHHhCC-----CcEEEecCCCCc----------CHHHHHHHHHH
Q psy38 108 PREVSEAEAKAFASQND-----ILHFETSSRSGF----------QVENAFTAVTQ 147 (193)
Q Consensus 108 ~~~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~----------~i~e~f~~i~~ 147 (193)
......++...+....+ ++++.+||.+|. ++.++++.|..
T Consensus 146 ~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~ 200 (396)
T PRK12735 146 LLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDS 200 (396)
T ss_pred HHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHh
Confidence 01111234555555543 678999999985 45555555554
No 237
>PRK12289 GTPase RsgA; Reviewed
Probab=98.91 E-value=1e-08 Score=82.34 Aligned_cols=92 Identities=15% Similarity=0.171 Sum_probs=67.1
Q ss_pred cchhhhccCccEEEEEEeCCChh-HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCc
Q psy38 48 SITKSYYRNSVGALLVYDITSRA-SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126 (193)
Q Consensus 48 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~ 126 (193)
.+.+..+.++|.+++|+|+.++. +...+.+|+..+.. .+.|+++|+||+||... .. .....+.....++.
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----~~ip~ILVlNK~DLv~~---~~--~~~~~~~~~~~g~~ 151 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----TGLEIVLCLNKADLVSP---TE--QQQWQDRLQQWGYQ 151 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEchhcCCh---HH--HHHHHHHHHhcCCe
Confidence 44566789999999999998765 44456778776633 24677899999999531 11 12222334567889
Q ss_pred EEEecCCCCcCHHHHHHHHHHH
Q psy38 127 HFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 127 ~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
++.+||.++.|+++++..+...
T Consensus 152 v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 152 PLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEEEEcCCCCCHHHHhhhhccc
Confidence 9999999999999999988754
No 238
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.91 E-value=1.3e-08 Score=78.94 Aligned_cols=79 Identities=16% Similarity=0.092 Sum_probs=56.5
Q ss_pred EEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeC
Q psy38 20 FFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCK 99 (193)
Q Consensus 20 ~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 99 (193)
+......+ ......+.+|||+|+.+|.......++.+|++|+|+|+++.... ....++..... .+.|+++++||
T Consensus 59 i~~~~~~~-~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~----~~~P~iivvNK 132 (267)
T cd04169 59 VTSSVMQF-EYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL----RGIPIITFINK 132 (267)
T ss_pred eEEEEEEE-eeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh----cCCCEEEEEEC
Confidence 34444444 55668899999999998887677788999999999999874321 22334333322 34789999999
Q ss_pred CCCCC
Q psy38 100 LDLLQ 104 (193)
Q Consensus 100 ~Dl~~ 104 (193)
+|+..
T Consensus 133 ~D~~~ 137 (267)
T cd04169 133 LDREG 137 (267)
T ss_pred CccCC
Confidence 99865
No 239
>KOG0705|consensus
Probab=98.91 E-value=1.5e-08 Score=83.45 Aligned_cols=146 Identities=21% Similarity=0.343 Sum_probs=112.5
Q ss_pred eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
++|++|| ....+.+.| ..+.+++-+ +|....+.+.|.+|... ..|-.++|++||||.+.+.++|+.+..
T Consensus 44 talvhr~ltgty~~~e~~e~-~~~kkE~vv-~gqs~lLlirdeg~~~~-----aQft~wvdavIfvf~~~d~~s~q~v~~ 116 (749)
T KOG0705|consen 44 TALVHRYLTGTYTQDESPEG-GRFKKEVVV-DGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFVFSVEDEQSFQAVQA 116 (749)
T ss_pred eeeeeeeccceeccccCCcC-ccceeeEEe-eccceEeeeecccCCch-----hhhhhhccceEEEEEeccccCHHHHHH
Confidence 5899999 222333444 344555556 89999999999998432 567788999999999999999999988
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh-CCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcC
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDILHFETSSRSGFQVENAFTAVTQEIYNRVQS 155 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~ 155 (193)
+.-.+..+.....+|+++++++ |.......+.+.++.+++++.. ..+.||++++..|.+++.+|..+...++...+.
T Consensus 117 l~~~l~~~r~r~~i~l~lvgtq-d~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k~i~~~~~ 194 (749)
T KOG0705|consen 117 LAHEMSSYRNISDLPLILVGTQ-DHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQKIVQLRKY 194 (749)
T ss_pred HHhhcccccccccchHHhhcCc-chhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHHHHHHHhh
Confidence 8878877777778899899988 5544433566777777776655 567999999999999999999999988876433
No 240
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.90 E-value=7.2e-09 Score=78.42 Aligned_cols=141 Identities=18% Similarity=0.254 Sum_probs=84.9
Q ss_pred CCcceeeEEEEEEEecCCcEEEEEEeeCCCcccccc-----chhhhccCccEEEEEEeCCChh---HHhhHHHHHHHHHH
Q psy38 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRS-----ITKSYYRNSVGALLVYDITSRA---SFEHIPVWMMEAKR 84 (193)
Q Consensus 13 ~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~-----~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~ 84 (193)
.||+.++ ...+.. ...+.+++||+||+..+.. .....++++.++|+|+|+.+.+ .+..+...+..+.+
T Consensus 32 ~~T~~ve--~~~v~~--~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~ 107 (232)
T PF04670_consen 32 EPTIDVE--KSHVRF--LSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQ 107 (232)
T ss_dssp ----SEE--EEEEEC--TTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHH
T ss_pred CCcCCce--EEEEec--CCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHH
Confidence 4666433 333332 3457899999999976543 3577899999999999998443 33334445555555
Q ss_pred hcCCCCCeEEEEeeCCCCCCCCCCCccC---HHHHHHHHHhCC---CcEEEecCCCCcCHHHHHHHHHHHHHHHhcCCCc
Q psy38 85 HIEPHRPVFALVGCKLDLLQSGVPREVS---EAEAKAFASQND---ILHFETSSRSGFQVENAFTAVTQEIYNRVQSGDY 158 (193)
Q Consensus 85 ~~~~~~~piilv~nK~Dl~~~~~~~~v~---~~~~~~~~~~~~---~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~~~ 158 (193)
+ .++..+-++.+|.|+..+.....+. .+...+.+...+ +.++.+|.-+ ..+-+.|..+++.++++...-+.
T Consensus 108 ~--sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP~~~~le~ 184 (232)
T PF04670_consen 108 Y--SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLIPNLSTLEN 184 (232)
T ss_dssp H--STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTSTTHCCCCC
T ss_pred h--CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHcccHHHHHH
Confidence 4 3467888999999985421111111 122223344455 6788888887 69999999999998877665544
Q ss_pred cc
Q psy38 159 KV 160 (193)
Q Consensus 159 ~~ 160 (193)
..
T Consensus 185 ~L 186 (232)
T PF04670_consen 185 LL 186 (232)
T ss_dssp CC
T ss_pred HH
Confidence 33
No 241
>KOG1489|consensus
Probab=98.89 E-value=1.5e-08 Score=78.47 Aligned_cols=108 Identities=15% Similarity=0.208 Sum_probs=79.8
Q ss_pred EEEEeeCCCcccccc----chhhh---ccCccEEEEEEeCCCh---hHHhhHHHHHHHHHHhcC-CCCCeEEEEeeCCCC
Q psy38 34 KLQLWDTAGQERFRS----ITKSY---YRNSVGALLVYDITSR---ASFEHIPVWMMEAKRHIE-PHRPVFALVGCKLDL 102 (193)
Q Consensus 34 ~l~l~D~~g~~~~~~----~~~~~---~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl 102 (193)
.+.+-|+||.-+-.. +...| ++.|+.++||.|++.. +.|+.+...+.++..+.. ....|.++|+||+|+
T Consensus 245 q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~ 324 (366)
T KOG1489|consen 245 QITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDL 324 (366)
T ss_pred eeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCc
Confidence 388999999654322 22333 4579999999999998 888888887777777654 456889999999998
Q ss_pred CCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHH
Q psy38 103 LQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 103 ~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
.+ -......++++...- .++.+||++++++.++...|-+
T Consensus 325 ~e------ae~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 325 PE------AEKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred hh------HHHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence 53 122224566666543 5999999999999999887654
No 242
>KOG1707|consensus
Probab=98.88 E-value=1.5e-09 Score=89.75 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=89.4
Q ss_pred cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH-HHHHHHHHHhcC-CCCCeEEEEeeCCCCCCCCCC
Q psy38 31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI-PVWMMEAKRHIE-PHRPVFALVGCKLDLLQSGVP 108 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~ 108 (193)
..+...+.|++....-+.....-++.+|++.++|+++++++++.+ .+|+..+.+..+ ....|||+||||.|+......
T Consensus 54 e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 54 ENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred CcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 446689999986655455557778999999999999999999999 559999998764 247899999999998764222
Q ss_pred CccCHHH-HHHHHHhC-CC-cEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 109 REVSEAE-AKAFASQN-DI-LHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 109 ~~v~~~~-~~~~~~~~-~~-~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
+.+. ..-+...+ .+ .+++|||++..++.|+|-..-+.++..
T Consensus 134 ---s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKaVihP 177 (625)
T KOG1707|consen 134 ---SDEVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQKAVIHP 177 (625)
T ss_pred ---chhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheeecc
Confidence 1121 22233322 24 689999999999999998887776653
No 243
>PRK13351 elongation factor G; Reviewed
Probab=98.86 E-value=1.2e-08 Score=89.11 Aligned_cols=69 Identities=23% Similarity=0.289 Sum_probs=55.2
Q ss_pred cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
....+.+|||+|+.+|...+..+++.+|++|+|+|+++.........| ..+.. ...|+++|+||.|+..
T Consensus 71 ~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~----~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 71 DNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR----YGIPRLIFINKMDRVG 139 (687)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh----cCCCEEEEEECCCCCC
Confidence 357899999999999988889999999999999999987666554444 33332 2478889999999875
No 244
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.86 E-value=2.5e-08 Score=81.86 Aligned_cols=115 Identities=21% Similarity=0.160 Sum_probs=72.6
Q ss_pred eeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEe
Q psy38 18 VDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVG 97 (193)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 97 (193)
++.....+.. + ..++.|+||+|+++|.......+..+|++++|+|+.....-+....|. +.... ...++++|.
T Consensus 68 id~~~~~~~~-~--~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~--~~~~~--~~~~iivvi 140 (406)
T TIGR02034 68 IDVAYRYFST-D--KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY--IASLL--GIRHVVLAV 140 (406)
T ss_pred eEeeeEEEcc-C--CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH--HHHHc--CCCcEEEEE
Confidence 4455555544 3 457889999999998766666788999999999997643222222222 22221 134688999
Q ss_pred eCCCCCCCCCCCccC---HHHHHHHHHhCC---CcEEEecCCCCcCHHHH
Q psy38 98 CKLDLLQSGVPREVS---EAEAKAFASQND---ILHFETSSRSGFQVENA 141 (193)
Q Consensus 98 nK~Dl~~~~~~~~v~---~~~~~~~~~~~~---~~~~~~Sa~~~~~i~e~ 141 (193)
||+|+.... .... .++...+.+..+ ++++.+||.+|.|+++.
T Consensus 141 NK~D~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 141 NKMDLVDYD--EEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred Eecccccch--HHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 999986421 1110 122223344433 47999999999999863
No 245
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.85 E-value=2e-08 Score=81.50 Aligned_cols=124 Identities=18% Similarity=0.093 Sum_probs=81.5
Q ss_pred cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccc--cc-------hhhhccCccEEEEEEeCCChhHHhhHHHHH
Q psy38 9 IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFR--SI-------TKSYYRNSVGALLVYDITSRASFEHIPVWM 79 (193)
Q Consensus 9 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~--~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 79 (193)
.+++.-+. .|..+....+ .+.. +.+.||+|-+... .+ ....+..||++|||+|....-+ .....+
T Consensus 31 V~D~pGvT-RDr~y~~~~~-~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git--~~D~~i 104 (444)
T COG1160 31 VSDTPGVT-RDRIYGDAEW-LGRE--FILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGIT--PADEEI 104 (444)
T ss_pred eecCCCCc-cCCccceeEE-cCce--EEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCC--HHHHHH
Confidence 33443333 5677777777 6644 8899999976433 12 2456778999999999876321 122222
Q ss_pred HHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHH
Q psy38 80 MEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 80 ~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
..+.. ....|+++|.||+|-.. ..+..-+| .++|+ ..+.+||..|.|++++.++++..+
T Consensus 105 a~~Lr---~~~kpviLvvNK~D~~~-------~e~~~~ef-yslG~g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 105 AKILR---RSKKPVILVVNKIDNLK-------AEELAYEF-YSLGFGEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred HHHHH---hcCCCEEEEEEcccCch-------hhhhHHHH-HhcCCCCceEeehhhccCHHHHHHHHHhhc
Confidence 22232 22478999999999532 22223333 34666 889999999999999999999876
No 246
>PRK12288 GTPase RsgA; Reviewed
Probab=98.84 E-value=2e-08 Score=80.57 Aligned_cols=89 Identities=18% Similarity=0.101 Sum_probs=66.0
Q ss_pred ccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCC
Q psy38 54 YRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133 (193)
Q Consensus 54 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 133 (193)
..++|.+++|++.+...++..+.+|+..+.. ...|+++|+||+||... ................+++++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----~~i~~VIVlNK~DL~~~--~~~~~~~~~~~~y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET----LGIEPLIVLNKIDLLDD--EGRAFVNEQLDIYRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCc--HHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3569999999999888899999999875543 23667799999999542 00011122333445678899999999
Q ss_pred CCcCHHHHHHHHHHH
Q psy38 134 SGFQVENAFTAVTQE 148 (193)
Q Consensus 134 ~~~~i~e~f~~i~~~ 148 (193)
++.|+++++..+...
T Consensus 192 tg~GideL~~~L~~k 206 (347)
T PRK12288 192 TGEGLEELEAALTGR 206 (347)
T ss_pred CCcCHHHHHHHHhhC
Confidence 999999999998753
No 247
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.83 E-value=1.6e-08 Score=81.69 Aligned_cols=95 Identities=21% Similarity=0.251 Sum_probs=70.1
Q ss_pred ccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHH----H
Q psy38 43 QERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAK----A 118 (193)
Q Consensus 43 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~----~ 118 (193)
.++|..+...+++.++++++|+|+.+.. ..|...+.+... ..|+++|+||+|+.. +.+..+... +
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~--~~piilV~NK~DLl~----k~~~~~~~~~~l~~ 118 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG--GNPVLLVGNKIDLLP----KSVNLSKIKEWMKK 118 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC--CCCEEEEEEchhhCC----CCCCHHHHHHHHHH
Confidence 4578888888999999999999987643 335555655532 468889999999864 233333433 3
Q ss_pred HHHhCCC---cEEEecCCCCcCHHHHHHHHHHH
Q psy38 119 FASQNDI---LHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 119 ~~~~~~~---~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
+++..++ .++.+||+++.|++++|..+.+.
T Consensus 119 ~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 119 RAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 4566676 48999999999999999998653
No 248
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.81 E-value=2.5e-08 Score=83.34 Aligned_cols=114 Identities=19% Similarity=0.138 Sum_probs=70.8
Q ss_pred eeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEe
Q psy38 18 VDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVG 97 (193)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 97 (193)
++.....+.. ...++.|+||||+++|.......+..+|++++|+|++....-+....|. +..... ..++++|.
T Consensus 95 id~~~~~~~~---~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~--l~~~lg--~~~iIvvv 167 (474)
T PRK05124 95 IDVAYRYFST---EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF--IATLLG--IKHLVVAV 167 (474)
T ss_pred eEeeEEEecc---CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH--HHHHhC--CCceEEEE
Confidence 3444444444 3467889999999988665555678999999999997642211112221 222211 24788999
Q ss_pred eCCCCCCCCCCCccCH----HHHHHHHHhC----CCcEEEecCCCCcCHHHH
Q psy38 98 CKLDLLQSGVPREVSE----AEAKAFASQN----DILHFETSSRSGFQVENA 141 (193)
Q Consensus 98 nK~Dl~~~~~~~~v~~----~~~~~~~~~~----~~~~~~~Sa~~~~~i~e~ 141 (193)
||+|+.+. ..... ++...+.... .++++.+||++|.|++++
T Consensus 168 NKiD~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 168 NKMDLVDY---SEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred Eeeccccc---hhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 99998641 11111 1222333333 368999999999999865
No 249
>COG1159 Era GTPase [General function prediction only]
Probab=98.80 E-value=4.5e-08 Score=75.44 Aligned_cols=113 Identities=14% Similarity=0.140 Sum_probs=73.8
Q ss_pred cEEEEEEeeCCCccccc--------cchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38 31 ARIKLQLWDTAGQERFR--------SITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL 102 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~--------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 102 (193)
.+.++.|.||||..+-. ......+.++|+++||.|++.. +..-..|+-+.... ...|++++.||+|.
T Consensus 52 ~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~--~~~~d~~il~~lk~---~~~pvil~iNKID~ 126 (298)
T COG1159 52 DNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEG--WGPGDEFILEQLKK---TKTPVILVVNKIDK 126 (298)
T ss_pred CCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEecccc--CCccHHHHHHHHhh---cCCCeEEEEEcccc
Confidence 46889999999954321 1234568899999999999873 22233333333322 34688899999998
Q ss_pred CCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 103 LQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 103 ~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
... ...-......+...... .++.+||++|.|++.+.+.+...+-+
T Consensus 127 ~~~---~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 127 VKP---KTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred CCc---HHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 652 22112333333333444 89999999999999988877765433
No 250
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.79 E-value=3.7e-08 Score=81.70 Aligned_cols=112 Identities=11% Similarity=0.140 Sum_probs=73.3
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS 112 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~ 112 (193)
..+.|.|+||++.|..........+|++++|.|+++..........+. +.... ...++++|.||+|+.+.. ...-.
T Consensus 117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~l--gi~~iIVvlNKiDlv~~~-~~~~~ 192 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIM--KLKHIIILQNKIDLVKEA-QAQDQ 192 (460)
T ss_pred ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHc--CCCcEEEEEecccccCHH-HHHHH
Confidence 367899999999987766677789999999999986311111122222 22222 235788999999986410 00011
Q ss_pred HHHHHHHHHh---CCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 113 EAEAKAFASQ---NDILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 113 ~~~~~~~~~~---~~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
.++..++... .+.+++.+||.+|.|++++++.|.+.
T Consensus 193 ~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~ 231 (460)
T PTZ00327 193 YEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQ 231 (460)
T ss_pred HHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhh
Confidence 2233333332 35689999999999999998888763
No 251
>PRK12740 elongation factor G; Reviewed
Probab=98.78 E-value=7.7e-08 Score=83.82 Aligned_cols=78 Identities=21% Similarity=0.163 Sum_probs=57.2
Q ss_pred eEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEee
Q psy38 19 DFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGC 98 (193)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 98 (193)
+.....+.+ + .+.+.+|||+|+.++...+..++..+|++++++|++..........| ..+.. .+.|+++|+|
T Consensus 49 ~~~~~~~~~-~--~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~----~~~p~iiv~N 120 (668)
T PRK12740 49 TSAATTCEW-K--GHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK----YGVPRIIFVN 120 (668)
T ss_pred eeceEEEEE-C--CEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH----cCCCEEEEEE
Confidence 344445555 4 47899999999998877788889999999999999886555444333 23332 2478889999
Q ss_pred CCCCCC
Q psy38 99 KLDLLQ 104 (193)
Q Consensus 99 K~Dl~~ 104 (193)
|+|+..
T Consensus 121 K~D~~~ 126 (668)
T PRK12740 121 KMDRAG 126 (668)
T ss_pred CCCCCC
Confidence 999864
No 252
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.78 E-value=9.4e-08 Score=75.83 Aligned_cols=53 Identities=11% Similarity=0.131 Sum_probs=36.1
Q ss_pred CCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC-CCcEEEecCCCCcCHHHHHH-HHHHHH
Q psy38 90 RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-DILHFETSSRSGFQVENAFT-AVTQEI 149 (193)
Q Consensus 90 ~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~e~f~-~i~~~i 149 (193)
..|+|+|+||.|+... .. ....+.... ...++.+||+.+.++.++.+ .+++.+
T Consensus 214 ~KPvI~VlNK~Dl~~~---~~----~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~l 268 (318)
T cd01899 214 SKPMVIAANKADIPDA---EN----NISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYD 268 (318)
T ss_pred CCcEEEEEEHHHccCh---HH----HHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhC
Confidence 3699999999997431 11 111222233 45799999999999999887 466654
No 253
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.72 E-value=4.4e-08 Score=84.74 Aligned_cols=115 Identities=18% Similarity=0.117 Sum_probs=70.8
Q ss_pred eeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEe
Q psy38 18 VDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVG 97 (193)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 97 (193)
++.....+.. ++ .++.|+||+|+++|.......+..+|++++|+|++....-+....+ ..+... ...++++|.
T Consensus 92 id~~~~~~~~-~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~-~~~~~~---~~~~iivvv 164 (632)
T PRK05506 92 IDVAYRYFAT-PK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHS-FIASLL---GIRHVVLAV 164 (632)
T ss_pred ceeeeeEEcc-CC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHH-HHHHHh---CCCeEEEEE
Confidence 3444445444 43 5677999999998866555678899999999999764322222222 112221 235788999
Q ss_pred eCCCCCCCCCCCcc--CHHHHHHHHHhCC---CcEEEecCCCCcCHHH
Q psy38 98 CKLDLLQSGVPREV--SEAEAKAFASQND---ILHFETSSRSGFQVEN 140 (193)
Q Consensus 98 nK~Dl~~~~~~~~v--~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~e 140 (193)
||+|+.+.. .... ...+..++....+ ++++.+||++|.|+++
T Consensus 165 NK~D~~~~~-~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 165 NKMDLVDYD-QEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred Eecccccch-hHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 999985410 0100 1122333444544 4689999999999984
No 254
>PRK13768 GTPase; Provisional
Probab=98.68 E-value=1e-07 Score=73.46 Aligned_cols=114 Identities=13% Similarity=0.098 Sum_probs=68.0
Q ss_pred EEEEeeCCCcccc---ccchhhhccC-----ccEEEEEEeCCChhHHhhH--HHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38 34 KLQLWDTAGQERF---RSITKSYYRN-----SVGALLVYDITSRASFEHI--PVWMMEAKRHIEPHRPVFALVGCKLDLL 103 (193)
Q Consensus 34 ~l~l~D~~g~~~~---~~~~~~~~~~-----~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~~piilv~nK~Dl~ 103 (193)
.+.+||++|+.+. +..++.+++. .+++++++|+....+..+. ..|+....... .+.|+++|.||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~--~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR--LGLPQIPVLNKADLL 175 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH--cCCCEEEEEEhHhhc
Confidence 5789999998663 3334333332 8999999999654332222 22332222211 247888999999986
Q ss_pred CCCCCCccCH--H------------------HHH---HHHHhCC--CcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 104 QSGVPREVSE--A------------------EAK---AFASQND--ILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 104 ~~~~~~~v~~--~------------------~~~---~~~~~~~--~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
.......... . ... +..+..+ .+++.+|++++.|++++..+|.+.+
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 5211000000 0 000 1122223 4889999999999999999997755
No 255
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.66 E-value=1.6e-07 Score=76.79 Aligned_cols=119 Identities=17% Similarity=0.155 Sum_probs=86.6
Q ss_pred cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC----------hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCC
Q psy38 31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS----------RASFEHIPVWMMEAKRHIEPHRPVFALVGCKL 100 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 100 (193)
....+.++|++|+...++.|..++.+++++|||.++++ ...+.+....++.+.........|++|+.||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 34678999999999999999999999999999999864 13466667777888776555688999999999
Q ss_pred CCCCC----CC----------CC-ccCHHHHHHHHHh------------CCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 101 DLLQS----GV----------PR-EVSEAEAKAFASQ------------NDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 101 Dl~~~----~~----------~~-~v~~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
|+-.. .+ +. .-..+.+..|... ..+.++.++|.+..++..+|..+.+.|
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 97321 11 01 1234555555443 113566899999999999999887654
No 256
>KOG0090|consensus
Probab=98.66 E-value=4.5e-07 Score=66.70 Aligned_cols=113 Identities=15% Similarity=0.322 Sum_probs=78.9
Q ss_pred EEEeeCCCccccccchhhhcc---CccEEEEEEeCCC-hhHHhhHHHHHHHHHHhc--CCCCCeEEEEeeCCCCCCCCCC
Q psy38 35 LQLWDTAGQERFRSITKSYYR---NSVGALLVYDITS-RASFEHIPVWMMEAKRHI--EPHRPVFALVGCKLDLLQSGVP 108 (193)
Q Consensus 35 l~l~D~~g~~~~~~~~~~~~~---~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~~~~~ 108 (193)
+++.|.||+.+.+.....+++ .+-++|||.|... .....++..++-++.... ..+.+|++++.||.|+..+.+.
T Consensus 84 ~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~ 163 (238)
T KOG0090|consen 84 VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTA 163 (238)
T ss_pred eEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcH
Confidence 789999999998887777777 7899999999864 334566666666666655 3678999999999999654322
Q ss_pred CccCH-------------------------------HHHHHH--H--HhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 109 REVSE-------------------------------AEAKAF--A--SQNDILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 109 ~~v~~-------------------------------~~~~~~--~--~~~~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
..+.. .++..| . ....+.+.++|++++ +++++-+|+.+.
T Consensus 164 ~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 164 EKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 22211 111111 1 112245888999988 999999998764
No 257
>COG2262 HflX GTPases [General function prediction only]
Probab=98.65 E-value=6.4e-07 Score=71.90 Aligned_cols=131 Identities=19% Similarity=0.145 Sum_probs=83.5
Q ss_pred eEEEEEEEecCCcEEEEEEeeCCCccc---------cccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCC
Q psy38 19 DFFARLVTMRDGARIKLQLWDTAGQER---------FRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPH 89 (193)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~l~D~~g~~~---------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 89 (193)
|-.++.+.+++|. .+-+-||-|--+ |++... -...+|.++.|.|++++...+.+..-..-+.+ .+-.
T Consensus 228 dpttR~~~l~~g~--~vlLtDTVGFI~~LP~~LV~AFksTLE-E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~e-l~~~ 303 (411)
T COG2262 228 DPTTRRIELGDGR--KVLLTDTVGFIRDLPHPLVEAFKSTLE-EVKEADLLLHVVDASDPEILEKLEAVEDVLAE-IGAD 303 (411)
T ss_pred cCceeEEEeCCCc--eEEEecCccCcccCChHHHHHHHHHHH-HhhcCCEEEEEeecCChhHHHHHHHHHHHHHH-cCCC
Confidence 3444566664554 466899988533 222111 13479999999999998655555443333333 3344
Q ss_pred CCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCCCcccc
Q psy38 90 RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVE 161 (193)
Q Consensus 90 ~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~~~~~~ 161 (193)
.+|+|+|.||+|+..+ . . ....+..... ..+.+||++|.|++.++..|.+.+-..........+
T Consensus 304 ~~p~i~v~NKiD~~~~---~-~---~~~~~~~~~~-~~v~iSA~~~~gl~~L~~~i~~~l~~~~~~~~l~lp 367 (411)
T COG2262 304 EIPIILVLNKIDLLED---E-E---ILAELERGSP-NPVFISAKTGEGLDLLRERIIELLSGLRTEVTLELP 367 (411)
T ss_pred CCCEEEEEecccccCc---h-h---hhhhhhhcCC-CeEEEEeccCcCHHHHHHHHHHHhhhcccceEEEcC
Confidence 5899999999997542 1 1 1111111112 578899999999999999999988876655544444
No 258
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.64 E-value=3.6e-07 Score=71.09 Aligned_cols=79 Identities=18% Similarity=0.118 Sum_probs=55.8
Q ss_pred eeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEe
Q psy38 18 VDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVG 97 (193)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 97 (193)
++.....+.+ + ..++.+|||||+.++...+..+++.+|++|+|+|+.+...-. ...++..+... +.|++++.
T Consensus 52 i~~~~~~~~~-~--~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~~----~~p~ivvi 123 (270)
T cd01886 52 IQSAATTCFW-K--DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADRY----NVPRIAFV 123 (270)
T ss_pred eeccEEEEEE-C--CEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHHc----CCCEEEEE
Confidence 3444444444 3 478899999999888888888999999999999997742211 12333333332 36888999
Q ss_pred eCCCCCC
Q psy38 98 CKLDLLQ 104 (193)
Q Consensus 98 nK~Dl~~ 104 (193)
||.|+.+
T Consensus 124 NK~D~~~ 130 (270)
T cd01886 124 NKMDRTG 130 (270)
T ss_pred ECCCCCC
Confidence 9999865
No 259
>PRK09866 hypothetical protein; Provisional
Probab=98.63 E-value=4.4e-07 Score=77.06 Aligned_cols=110 Identities=17% Similarity=0.125 Sum_probs=71.4
Q ss_pred EEEEEEeeCCCcccc-----ccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC
Q psy38 32 RIKLQLWDTAGQERF-----RSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG 106 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 106 (193)
...+.|.||||...- .......+..+|+++||+|.+...+..+ ....+.+... ....|+++|.||+|+.+.
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~--~K~~PVILVVNKIDl~dr- 304 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV--GQSVPLYVLVNKFDQQDR- 304 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc--CCCCCEEEEEEcccCCCc-
Confidence 356789999997542 2233457889999999999987433332 1223333322 112589999999998531
Q ss_pred CCCccCHHHHHHHHH----hCC---CcEEEecCCCCcCHHHHHHHHHH
Q psy38 107 VPREVSEAEAKAFAS----QND---ILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 107 ~~~~v~~~~~~~~~~----~~~---~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
.....+....+.. ... ..+|.+||+.|.|+++++..|..
T Consensus 305 --eeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 305 --NSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred --ccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 1112334444422 112 26999999999999999999887
No 260
>PRK00049 elongation factor Tu; Reviewed
Probab=98.60 E-value=7.1e-07 Score=73.14 Aligned_cols=101 Identities=15% Similarity=0.165 Sum_probs=64.3
Q ss_pred CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEE-EEeeCCCCCCCCC
Q psy38 29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFA-LVGCKLDLLQSGV 107 (193)
Q Consensus 29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~ 107 (193)
+.....+.|.||||+.+|.......+..+|++++|+|+..... .....++..+... ..|++ ++.||.|+.+.
T Consensus 71 ~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~----g~p~iiVvvNK~D~~~~-- 143 (396)
T PRK00049 71 ETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV----GVPYIVVFLNKCDMVDD-- 143 (396)
T ss_pred cCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc----CCCEEEEEEeecCCcch--
Confidence 3344677899999998876666677889999999999976422 2223333333332 35654 68999998541
Q ss_pred CCcc---CHHHHHHHHHhC-----CCcEEEecCCCCcC
Q psy38 108 PREV---SEAEAKAFASQN-----DILHFETSSRSGFQ 137 (193)
Q Consensus 108 ~~~v---~~~~~~~~~~~~-----~~~~~~~Sa~~~~~ 137 (193)
... ...+...+.... .++++.+||.++.+
T Consensus 144 -~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 144 -EELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred -HHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccC
Confidence 111 112333444332 36899999998753
No 261
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.59 E-value=2.8e-07 Score=77.91 Aligned_cols=82 Identities=18% Similarity=0.124 Sum_probs=58.3
Q ss_pred eeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEE
Q psy38 17 GVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALV 96 (193)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv 96 (193)
|+.+......+ +...+.+.+|||+|+..|......++..+|++|+|+|+++.. ......++..... ...|++++
T Consensus 65 gisi~~~~~~~-~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~----~~~Piivv 138 (527)
T TIGR00503 65 GISITTSVMQF-PYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL----RDTPIFTF 138 (527)
T ss_pred CCcEEEEEEEE-eeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh----cCCCEEEE
Confidence 44455555555 556689999999999988776677889999999999998731 1122344433322 34789999
Q ss_pred eeCCCCCC
Q psy38 97 GCKLDLLQ 104 (193)
Q Consensus 97 ~nK~Dl~~ 104 (193)
+||+|+..
T Consensus 139 iNKiD~~~ 146 (527)
T TIGR00503 139 MNKLDRDI 146 (527)
T ss_pred EECccccC
Confidence 99999864
No 262
>PLN03126 Elongation factor Tu; Provisional
Probab=98.59 E-value=2.5e-07 Score=77.27 Aligned_cols=103 Identities=17% Similarity=0.084 Sum_probs=66.1
Q ss_pred cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe-EEEEeeCCCCCCCCCCC
Q psy38 31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV-FALVGCKLDLLQSGVPR 109 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~ 109 (193)
....+.|+|++|+++|.......+..+|++++|+|+.+...-+ ...++..+... ..| ++++.||.|+.+.....
T Consensus 142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~----gi~~iIvvvNK~Dl~~~~~~~ 216 (478)
T PLN03126 142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV----GVPNMVVFLNKQDQVDDEELL 216 (478)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc----CCCeEEEEEecccccCHHHHH
Confidence 3457889999999998776677778899999999988643222 23333333332 245 77899999985410000
Q ss_pred ccCHHHHHHHHHhC-----CCcEEEecCCCCcCH
Q psy38 110 EVSEAEAKAFASQN-----DILHFETSSRSGFQV 138 (193)
Q Consensus 110 ~v~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i 138 (193)
....++...+.+.. +++++.+|+.++.++
T Consensus 217 ~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 217 ELVELEVRELLSSYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred HHHHHHHHHHHHhcCCCcCcceEEEEEccccccc
Confidence 11122444555443 468999999988543
No 263
>CHL00071 tufA elongation factor Tu
Probab=98.58 E-value=4.2e-07 Score=74.79 Aligned_cols=103 Identities=17% Similarity=0.101 Sum_probs=65.7
Q ss_pred cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe-EEEEeeCCCCCCCCCCC
Q psy38 31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV-FALVGCKLDLLQSGVPR 109 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~ 109 (193)
...++.|.||||+.+|.......+..+|++++|+|+..... ......+..+... ..| ++++.||.|+.+.....
T Consensus 73 ~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~----g~~~iIvvvNK~D~~~~~~~~ 147 (409)
T CHL00071 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV----GVPNIVVFLNKEDQVDDEELL 147 (409)
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCEEEEEEEccCCCCHHHHH
Confidence 44577899999998887666677889999999999976422 1222333333322 246 77899999986421000
Q ss_pred ccCHHHHHHHHHhCC-----CcEEEecCCCCcCH
Q psy38 110 EVSEAEAKAFASQND-----ILHFETSSRSGFQV 138 (193)
Q Consensus 110 ~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i 138 (193)
....++...+.+..+ ++++.+||.+|.|+
T Consensus 148 ~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 148 ELVELEVRELLSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHHHHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence 111234445554433 68999999998754
No 264
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.56 E-value=3.9e-07 Score=67.61 Aligned_cols=113 Identities=12% Similarity=0.091 Sum_probs=67.9
Q ss_pred EEEEEeeCCCccccccchhh-----hccCccEEEEEEeCCChhHHhhHH-HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC
Q psy38 33 IKLQLWDTAGQERFRSITKS-----YYRNSVGALLVYDITSRASFEHIP-VWMMEAKRHIEPHRPVFALVGCKLDLLQSG 106 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 106 (193)
..+.+|||+|.......... .+.++|+++++.+. +|.... .|+..+... ..|+++|+||+|+....
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~----~~~~~d~~~~~~l~~~----~~~~ilV~nK~D~~~~~ 123 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST----RFSSNDVKLAKAIQCM----GKKFYFVRTKVDRDLSN 123 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC----CCCHHHHHHHHHHHHh----CCCEEEEEecccchhhh
Confidence 36899999997543222222 36778998887432 344443 455555543 36888999999984310
Q ss_pred CC-Ccc---CH----HHHHHHH----HhCC---CcEEEecCC--CCcCHHHHHHHHHHHHHHHh
Q psy38 107 VP-REV---SE----AEAKAFA----SQND---ILHFETSSR--SGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 107 ~~-~~v---~~----~~~~~~~----~~~~---~~~~~~Sa~--~~~~i~e~f~~i~~~i~~~~ 153 (193)
.. ... .. ++.++.+ ...+ .++|.+|+. .+.++..+.+.++..+-+..
T Consensus 124 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 124 EQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred hhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 00 000 11 1111222 2222 378999998 57899999999988776643
No 265
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.55 E-value=3.6e-07 Score=71.32 Aligned_cols=114 Identities=16% Similarity=0.123 Sum_probs=70.4
Q ss_pred CCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccc--------------------------cchhhhcc--CccEEEEE
Q psy38 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFR--------------------------SITKSYYR--NSVGALLV 63 (193)
Q Consensus 12 ~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~--------------------------~~~~~~~~--~~d~~i~v 63 (193)
+.+|++.+.....+.. +|..+.+.+|||+|..... ..+...+. .+|+++++
T Consensus 43 ~~~T~~i~~~~~~i~~-~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~ 121 (276)
T cd01850 43 IDKTVEIKSSKAEIEE-NGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYF 121 (276)
T ss_pred cCCceEEEEEEEEEEE-CCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEE
Confidence 5677777777777777 8888999999999942211 11113344 36777777
Q ss_pred EeCCChhHHhhH-HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCC
Q psy38 64 YDITSRASFEHI-PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133 (193)
Q Consensus 64 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 133 (193)
++.+.. .+... ...+..+.. ..|+++|+||+|+.... ..........+.+..+++.+|.....
T Consensus 122 i~~~~~-~l~~~D~~~lk~l~~-----~v~vi~VinK~D~l~~~-e~~~~k~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 122 IEPTGH-GLKPLDIEFMKRLSK-----RVNIIPVIAKADTLTPE-ELKEFKQRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred EeCCCC-CCCHHHHHHHHHHhc-----cCCEEEEEECCCcCCHH-HHHHHHHHHHHHHHHcCCceECCCCC
Confidence 776541 12111 222333322 47899999999985410 11233455667777789998876654
No 266
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.53 E-value=8.9e-07 Score=73.56 Aligned_cols=109 Identities=13% Similarity=0.058 Sum_probs=68.6
Q ss_pred CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChh---HH---hhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38 29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA---SF---EHIPVWMMEAKRHIEPHRPVFALVGCKLDL 102 (193)
Q Consensus 29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 102 (193)
......+.|+||||+.+|.......+..+|++++|+|++... .| ....+.+..+... ..+.+|++.||.|.
T Consensus 81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDD 157 (446)
T ss_pred ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEcccc
Confidence 334578899999999999877777788999999999998642 11 1222222223322 22457799999995
Q ss_pred CCC-CCCC--ccCHHHHHHHHHhC-----CCcEEEecCCCCcCHHH
Q psy38 103 LQS-GVPR--EVSEAEAKAFASQN-----DILHFETSSRSGFQVEN 140 (193)
Q Consensus 103 ~~~-~~~~--~v~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~e 140 (193)
... .... .-..++..++.... .++++.+|+.+|.|+.+
T Consensus 158 ~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 158 KTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred ccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 320 0000 01123333343333 36799999999999964
No 267
>PLN03127 Elongation factor Tu; Provisional
Probab=98.53 E-value=9.2e-07 Score=73.43 Aligned_cols=126 Identities=14% Similarity=0.113 Sum_probs=72.0
Q ss_pred CCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCC
Q psy38 11 ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHR 90 (193)
Q Consensus 11 ~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 90 (193)
+..+.+.++.....+ +....++.|.||||+.+|..........+|++++|+|+++...-+ ....+..+... .
T Consensus 105 E~~rGiTi~~~~~~~---~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~~----g 176 (447)
T PLN03127 105 EKARGITIATAHVEY---ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV----G 176 (447)
T ss_pred HhhcCceeeeeEEEE---cCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc----C
Confidence 333444444444443 334467889999999887665555667899999999987642211 22223333322 3
Q ss_pred Ce-EEEEeeCCCCCCCCCCCccC---HHHHHHHHHhC-----CCcEEEecCC---CCcC-------HHHHHHHHHH
Q psy38 91 PV-FALVGCKLDLLQSGVPREVS---EAEAKAFASQN-----DILHFETSSR---SGFQ-------VENAFTAVTQ 147 (193)
Q Consensus 91 ~p-iilv~nK~Dl~~~~~~~~v~---~~~~~~~~~~~-----~~~~~~~Sa~---~~~~-------i~e~f~~i~~ 147 (193)
.| ++++.||+|+.++ .... ..+..++.... .++++.+|+. ++.| +.++++++..
T Consensus 177 ip~iIvviNKiDlv~~---~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~ 249 (447)
T PLN03127 177 VPSLVVFLNKVDVVDD---EELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDE 249 (447)
T ss_pred CCeEEEEEEeeccCCH---HHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHH
Confidence 56 5688999998641 1111 11222333322 3578888876 4444 4555555544
No 268
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.51 E-value=2.4e-07 Score=67.45 Aligned_cols=75 Identities=24% Similarity=0.415 Sum_probs=52.7
Q ss_pred cEEEEEEeeCCCccccccchhh---hccCccEEEEEEeCCC-hhHHhhHHHHHHHHHHhcC--CCCCeEEEEeeCCCCCC
Q psy38 31 ARIKLQLWDTAGQERFRSITKS---YYRNSVGALLVYDITS-RASFEHIPVWMMEAKRHIE--PHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~~~~~~---~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~ 104 (193)
..-.+.+.|+||+.+.+..... +..++-++|||.|.+. ...+.++..++-++..... ...+|++|++||.|+..
T Consensus 47 ~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 47 KGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp CGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred CCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 3456889999999987764333 5788999999999975 4466677666666655443 56799999999999966
Q ss_pred C
Q psy38 105 S 105 (193)
Q Consensus 105 ~ 105 (193)
+
T Consensus 127 A 127 (181)
T PF09439_consen 127 A 127 (181)
T ss_dssp -
T ss_pred c
Confidence 4
No 269
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.48 E-value=1.8e-06 Score=70.40 Aligned_cols=126 Identities=16% Similarity=0.183 Sum_probs=82.9
Q ss_pred ceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEE
Q psy38 16 VGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFAL 95 (193)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 95 (193)
-|+.+..+.-.+ +.+.+++.+.||+|+..|.--.+..+.=+|+++++.|+.+.. +-..+-.+..... ..-.|| +
T Consensus 52 RGITILaKnTav-~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~---~gL~PI-V 125 (603)
T COG1217 52 RGITILAKNTAV-NYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA---LGLKPI-V 125 (603)
T ss_pred cCcEEEecccee-ecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHH---cCCCcE-E
Confidence 355566565555 556699999999999999888888888899999999998732 2222222222332 223576 8
Q ss_pred EeeCCCCCCCCCCCccCHHHHHHHHHh-------CCCcEEEecCCCCc----------CHHHHHHHHHHHH
Q psy38 96 VGCKLDLLQSGVPREVSEAEAKAFASQ-------NDILHFETSSRSGF----------QVENAFTAVTQEI 149 (193)
Q Consensus 96 v~nK~Dl~~~~~~~~v~~~~~~~~~~~-------~~~~~~~~Sa~~~~----------~i~e~f~~i~~~i 149 (193)
|.||+|.+.+.+.. -.++...+.-. ++++++..|+..|. +...+|+.|++++
T Consensus 126 VvNKiDrp~Arp~~--Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 126 VINKIDRPDARPDE--VVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred EEeCCCCCCCCHHH--HHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 99999997753222 12333333322 56789999988764 5666777666654
No 270
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.47 E-value=4.2e-07 Score=61.75 Aligned_cols=80 Identities=18% Similarity=0.096 Sum_probs=57.8
Q ss_pred cccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC
Q psy38 46 FRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI 125 (193)
Q Consensus 46 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~ 125 (193)
+......++++++++++||+.++.++++.+ |...+.... ..+.|+++++||.|+.+. ..+..+++..
T Consensus 36 ~~~~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~-k~dl~~~~~~nk~dl~~~---~~~~~~~~~~------- 102 (124)
T smart00010 36 IDVYDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGN-KSDLPILVGGNRDVLEEE---RQVATEEGLE------- 102 (124)
T ss_pred hhhccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcC-CCCCcEEEEeechhhHhh---CcCCHHHHHH-------
Confidence 334456678889999999999999998766 877776543 446788899999998542 2344444444
Q ss_pred cEEEecCCCCcCHH
Q psy38 126 LHFETSSRSGFQVE 139 (193)
Q Consensus 126 ~~~~~Sa~~~~~i~ 139 (193)
++++|++++.|+.
T Consensus 103 -~~~~s~~~~~~~~ 115 (124)
T smart00010 103 -FAETSAKTPEEGE 115 (124)
T ss_pred -HHHHhCCCcchhh
Confidence 3457899999884
No 271
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=1.5e-06 Score=69.91 Aligned_cols=131 Identities=15% Similarity=0.028 Sum_probs=80.2
Q ss_pred eeeccCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChh---HHhhHHHHHHH
Q psy38 5 LYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA---SFEHIPVWMME 81 (193)
Q Consensus 5 l~r~~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~ 81 (193)
+++..++-..-+.++.....+ ....+.+.+.|++|+..|.........++|++|+|.|+.+.+ .|.--....+.
T Consensus 60 lD~tkeERerGvTi~~~~~~f---et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH 136 (428)
T COG5256 60 LDKTKEERERGVTIDVAHSKF---ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREH 136 (428)
T ss_pred ecCChhHHhcceEEEEEEEEe---ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHH
Confidence 333333333333334444444 445678999999999999887788888999999999998753 22111111111
Q ss_pred HHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHH----HHHHhCC-----CcEEEecCCCCcCHHHH
Q psy38 82 AKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAK----AFASQND-----ILHFETSSRSGFQVENA 141 (193)
Q Consensus 82 i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~----~~~~~~~-----~~~~~~Sa~~~~~i~e~ 141 (193)
+.-.....-.-+|++.||.|+.+ .++-..++.. .+.+..| ++|+.+|+..|.|+.+.
T Consensus 137 ~~La~tlGi~~lIVavNKMD~v~---wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 137 AFLARTLGIKQLIVAVNKMDLVS---WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHhcCCceEEEEEEcccccc---cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 11111223456779999999976 3333333322 2444433 56999999999998754
No 272
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.44 E-value=1.8e-06 Score=67.15 Aligned_cols=100 Identities=18% Similarity=0.121 Sum_probs=64.1
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV 111 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v 111 (193)
...+.+|||+|+.++......++..+|++++|+|+++.........| ..+.. ...|+++|+||.|+... .
T Consensus 63 ~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~----~~~p~iivvNK~D~~~~-----~ 132 (268)
T cd04170 63 GHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE----AGIPRIIFINKMDRERA-----D 132 (268)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEECCccCCC-----C
Confidence 46789999999988877788889999999999999876544333333 22332 24688899999998652 1
Q ss_pred CHHHHHHHHHhCCCcEE--EecCCCCcCHHHH
Q psy38 112 SEAEAKAFASQNDILHF--ETSSRSGFQVENA 141 (193)
Q Consensus 112 ~~~~~~~~~~~~~~~~~--~~Sa~~~~~i~e~ 141 (193)
..+...++....+..++ .++..++.++..+
T Consensus 133 ~~~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~ 164 (268)
T cd04170 133 FDKTLAALQEAFGRPVVPLQLPIGEGDDFKGV 164 (268)
T ss_pred HHHHHHHHHHHhCCCeEEEEecccCCCceeEE
Confidence 22223334444454433 3344554444333
No 273
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.44 E-value=1.1e-06 Score=76.80 Aligned_cols=79 Identities=19% Similarity=0.099 Sum_probs=57.5
Q ss_pred eeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEe
Q psy38 18 VDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVG 97 (193)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 97 (193)
++.....+.+ + ..++.||||+|+.++......+++.+|++++|+|+++....+.. .++..+... ..|+++|+
T Consensus 63 i~~~~~~~~~-~--~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~----~~p~ivvi 134 (689)
T TIGR00484 63 ITSAATTVFW-K--GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANRY----EVPRIAFV 134 (689)
T ss_pred EecceEEEEE-C--CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHHc----CCCEEEEE
Confidence 3444455555 4 47889999999998877788899999999999999875444433 233333322 46888999
Q ss_pred eCCCCCC
Q psy38 98 CKLDLLQ 104 (193)
Q Consensus 98 nK~Dl~~ 104 (193)
||+|+..
T Consensus 135 NK~D~~~ 141 (689)
T TIGR00484 135 NKMDKTG 141 (689)
T ss_pred ECCCCCC
Confidence 9999865
No 274
>PRK12739 elongation factor G; Reviewed
Probab=98.43 E-value=3.3e-06 Score=73.92 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=58.4
Q ss_pred CCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe
Q psy38 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV 92 (193)
Q Consensus 13 ~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 92 (193)
.+.+.++.....+.+ ++ .++.|+||+|+.+|...+...+..+|++|+|+|+.+...-++. ..+..+... ..|
T Consensus 56 ~rgiti~~~~~~~~~-~~--~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~~----~~p 127 (691)
T PRK12739 56 ERGITITSAATTCFW-KG--HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADKY----GVP 127 (691)
T ss_pred hcCCCccceeEEEEE-CC--EEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHHc----CCC
Confidence 333444555555655 44 6788999999988877788889999999999999875332222 223333322 367
Q ss_pred EEEEeeCCCCCC
Q psy38 93 FALVGCKLDLLQ 104 (193)
Q Consensus 93 iilv~nK~Dl~~ 104 (193)
++++.||+|+..
T Consensus 128 ~iv~iNK~D~~~ 139 (691)
T PRK12739 128 RIVFVNKMDRIG 139 (691)
T ss_pred EEEEEECCCCCC
Confidence 889999999864
No 275
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.42 E-value=1.7e-06 Score=61.68 Aligned_cols=85 Identities=18% Similarity=0.092 Sum_probs=54.6
Q ss_pred cEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcC
Q psy38 58 VGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQ 137 (193)
Q Consensus 58 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 137 (193)
|++++|+|+.++.+... .|+.. ......+.|+++|.||+|+... ..+ ......+....+..++.+||+++.|
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~--~~~~~~~~p~IiVlNK~Dl~~~---~~~-~~~~~~~~~~~~~~ii~vSa~~~~g 72 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER--VLIKEKGKKLILVLNKADLVPK---EVL-RKWLAYLRHSYPTIPFKISATNGQG 72 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH--HHHhcCCCCEEEEEechhcCCH---HHH-HHHHHHHHhhCCceEEEEeccCCcC
Confidence 68999999988765443 23331 1112234788899999998431 111 1111123333455788999999999
Q ss_pred HHHHHHHHHHHHH
Q psy38 138 VENAFTAVTQEIY 150 (193)
Q Consensus 138 i~e~f~~i~~~i~ 150 (193)
++++++.+.+...
T Consensus 73 i~~L~~~i~~~~~ 85 (155)
T cd01849 73 IEKKESAFTKQTN 85 (155)
T ss_pred hhhHHHHHHHHhH
Confidence 9999999987654
No 276
>KOG1707|consensus
Probab=98.42 E-value=1.8e-06 Score=71.97 Aligned_cols=142 Identities=18% Similarity=0.106 Sum_probs=97.5
Q ss_pred eeeeeec-cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHH
Q psy38 2 VTLLYLY-IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMM 80 (193)
Q Consensus 2 ~sll~r~-~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~ 80 (193)
.|++.|- .+.+..+....+....+.+ .|..-.+.+-|.+-. ...-+...- ..||+++++||.+++.+|.-+...++
T Consensus 443 ~sflgr~~~~~~~~~~~~~~avn~v~~-~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~ 519 (625)
T KOG1707|consen 443 QSFLGRSMSDNNTGTTKPRYAVNSVEV-KGQQKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSNPRSFEYLAEVYN 519 (625)
T ss_pred HHHhccccccccccCCCCceeeeeeee-ccccceEEEeecCcc-ccccccCcc-ceeeeEEEecccCCchHHHHHHHHHH
Confidence 3445553 4467677777777888888 677778888887754 222222222 77999999999999999998766544
Q ss_pred HHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 81 EAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 81 ~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
.-.. ....|+++|++|+|+.+. ........ .+++.++++ +-...|.+.... .++|..|+..+..-.
T Consensus 520 ~~~~---~~~~Pc~~va~K~dlDe~--~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 520 KYFD---LYKIPCLMVATKADLDEV--PQRYSIQP-DEFCRQLGLPPPIHISSKTLSS-NELFIKLATMAQYPH 586 (625)
T ss_pred Hhhh---ccCCceEEEeeccccchh--hhccCCCh-HHHHHhcCCCCCeeeccCCCCC-chHHHHHHHhhhCCC
Confidence 3332 356899999999999763 11122222 689999998 455566664334 899999998776544
No 277
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.36 E-value=2.3e-06 Score=61.09 Aligned_cols=88 Identities=15% Similarity=0.134 Sum_probs=54.9
Q ss_pred hccCccEEEEEEeCCChhH--HhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEe
Q psy38 53 YYRNSVGALLVYDITSRAS--FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130 (193)
Q Consensus 53 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (193)
.++++|++++|.|+.++.. ...+.+++. . . ..+.|+++|.||+|+... .. .......+.+......+.+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~-~-~~~~p~ilVlNKiDl~~~---~~-~~~~~~~~~~~~~~~~~~i 75 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---K-E-KPHKHLIFVLNKCDLVPT---WV-TARWVKILSKEYPTIAFHA 75 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHH---h-c-cCCCCEEEEEEchhcCCH---HH-HHHHHHHHhcCCcEEEEEe
Confidence 4678999999999988632 222233222 2 1 223678899999998531 11 1111222222222345779
Q ss_pred cCCCCcCHHHHHHHHHHHH
Q psy38 131 SSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 131 Sa~~~~~i~e~f~~i~~~i 149 (193)
||+.+.|++++.+.+.+..
T Consensus 76 Sa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 76 SINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred eccccccHHHHHHHHHHHH
Confidence 9999999999999987653
No 278
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.35 E-value=6.2e-06 Score=64.93 Aligned_cols=117 Identities=16% Similarity=0.059 Sum_probs=78.9
Q ss_pred EEEEEeeCCCcccccc----chhhh---ccCccEEEEEEeCCChh---HHhhHHHHHHHHHHhcC-CCCCeEEEEeeCCC
Q psy38 33 IKLQLWDTAGQERFRS----ITKSY---YRNSVGALLVYDITSRA---SFEHIPVWMMEAKRHIE-PHRPVFALVGCKLD 101 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~----~~~~~---~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~-~~~~piilv~nK~D 101 (193)
-.+.+-|+||.-+-.+ +...| ++.|-+++++.|++..+ ..++......++..+.. ....|.++|+||+|
T Consensus 207 ~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD 286 (369)
T COG0536 207 ESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKID 286 (369)
T ss_pred CcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccC
Confidence 3477899998643222 22333 45789999999998643 46666677777777643 44678889999999
Q ss_pred CCCCCCCCccCHHHHHHHHHhCCCc--EEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 102 LLQSGVPREVSEAEAKAFASQNDIL--HFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 102 l~~~~~~~~v~~~~~~~~~~~~~~~--~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
+..+ .+-.......+....+.. ++ +||.++.|++++...+.+.+....
T Consensus 287 ~~~~---~e~~~~~~~~l~~~~~~~~~~~-ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 287 LPLD---EEELEELKKALAEALGWEVFYL-ISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred CCcC---HHHHHHHHHHHHHhcCCCccee-eehhcccCHHHHHHHHHHHHHHhh
Confidence 6541 222223333444444443 33 999999999999999998877765
No 279
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.34 E-value=4.2e-06 Score=69.64 Aligned_cols=150 Identities=16% Similarity=0.227 Sum_probs=100.2
Q ss_pred eeeeec--cCCCCCcceeeEEEEEEEecC-CcEEEEEEeeCCCccccccchhhhccC----ccEEEEEEeCCChhH-Hhh
Q psy38 3 TLLYLY--IQISDPTVGVDFFARLVTMRD-GARIKLQLWDTAGQERFRSITKSYYRN----SVGALLVYDITSRAS-FEH 74 (193)
Q Consensus 3 sll~r~--~~~~~pt~~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~~~~----~d~~i~v~d~~~~~s-~~~ 74 (193)
+||.+| .+++.++.|.+|.+-.+.-.+ ....++.+|..+|...+..+....+.. --.+|||.|++.|-. +++
T Consensus 40 tli~~L~~~e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~es 119 (472)
T PF05783_consen 40 TLIARLQGIEDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMES 119 (472)
T ss_pred HHHHHhhccCCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEEEEEecCCChHHHHHH
Confidence 577777 677888888888776655311 133578999998877777776555542 356889999998743 334
Q ss_pred HHHHHHHHHHhc-------------------------C----C--------------------------------CCCeE
Q psy38 75 IPVWMMEAKRHI-------------------------E----P--------------------------------HRPVF 93 (193)
Q Consensus 75 ~~~~~~~i~~~~-------------------------~----~--------------------------------~~~pi 93 (193)
+..|+.-+..+. . . -.+||
T Consensus 120 L~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi 199 (472)
T PF05783_consen 120 LEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPI 199 (472)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccccCCCCCcccccccCcce
Confidence 444443331111 0 0 02799
Q ss_pred EEEeeCCCCCCCC----CCCc----cCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 94 ALVGCKLDLLQSG----VPRE----VSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 94 ilv~nK~Dl~~~~----~~~~----v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
+||.+|+|..... ...+ .-....+.+|-++|+.++.||++...+++-++..|.+.++..
T Consensus 200 ~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~ 266 (472)
T PF05783_consen 200 VVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGF 266 (472)
T ss_pred EEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccC
Confidence 9999999963211 0011 112446678888999999999999999999999988887664
No 280
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.34 E-value=5.4e-06 Score=65.50 Aligned_cols=114 Identities=22% Similarity=0.215 Sum_probs=77.2
Q ss_pred cceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH--HHHHHHHhcCCCCCe
Q psy38 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV--WMMEAKRHIEPHRPV 92 (193)
Q Consensus 15 t~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~--~~~~i~~~~~~~~~p 92 (193)
.|.+|..++.+.. .+-.+.+-||||++.|.+....-...||++|++.|+-.. -++..++ ++..+.. -.-
T Consensus 71 GITIDVAYRyFsT---~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTrRHs~I~sLLG-----Irh 141 (431)
T COG2895 71 GITIDVAYRYFST---EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTRRHSFIASLLG-----IRH 141 (431)
T ss_pred CceEEEEeeeccc---ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhHHHHHHHHHhC-----CcE
Confidence 3445666666655 446688999999999988877788889999999998532 1222211 3333332 256
Q ss_pred EEEEeeCCCCCCCCCCCccCH---HHHHHHHHhCCC---cEEEecCCCCcCHH
Q psy38 93 FALVGCKLDLLQSGVPREVSE---AEAKAFASQNDI---LHFETSSRSGFQVE 139 (193)
Q Consensus 93 iilv~nK~Dl~~~~~~~~v~~---~~~~~~~~~~~~---~~~~~Sa~~~~~i~ 139 (193)
+++..||+||.+- .+.... .+-..|+.++++ .++..||..|.||-
T Consensus 142 vvvAVNKmDLvdy--~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 142 VVVAVNKMDLVDY--SEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred EEEEEeeeccccc--CHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 7799999999762 111211 233457777775 68899999999885
No 281
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.31 E-value=4.1e-06 Score=61.39 Aligned_cols=108 Identities=16% Similarity=0.091 Sum_probs=66.9
Q ss_pred EEEeeCCCc----------cccccchhhhccC---ccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCC
Q psy38 35 LQLWDTAGQ----------ERFRSITKSYYRN---SVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLD 101 (193)
Q Consensus 35 l~l~D~~g~----------~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 101 (193)
+.+.|.||- +.+..+...|++. -.++++++|...+..-.+. ..++-+.. .+.|+++|.||+|
T Consensus 72 ~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~----~~i~~~vv~tK~D 146 (200)
T COG0218 72 LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE----LGIPVIVVLTKAD 146 (200)
T ss_pred EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH----cCCCeEEEEEccc
Confidence 789999982 3445555666663 5778899998765433222 22232332 3578999999999
Q ss_pred CCCCCCCCccCHHHHHHHHHh----CCCc--EEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 102 LLQSGVPREVSEAEAKAFASQ----NDIL--HFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 102 l~~~~~~~~v~~~~~~~~~~~----~~~~--~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
.... ... .......+.. .... ++..|+..+.|++++...|.+.+..
T Consensus 147 Ki~~---~~~-~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 147 KLKK---SER-NKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred cCCh---hHH-HHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 7541 111 1111222222 2222 7789999999999999988876543
No 282
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.31 E-value=1.8e-06 Score=75.81 Aligned_cols=87 Identities=20% Similarity=0.142 Sum_probs=60.3
Q ss_pred CCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCC
Q psy38 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRP 91 (193)
Q Consensus 12 ~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 91 (193)
+..|+...+....... ++..+.+.+|||+|+.+|.......+..+|++|+|+|+.+.-..+....| ..+.. ...
T Consensus 66 rg~Ti~~~~~~~~~~~-~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~----~~~ 139 (720)
T TIGR00490 66 RGITINAANVSMVHEY-EGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK----ENV 139 (720)
T ss_pred hcchhhcccceeEEee-cCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH----cCC
Confidence 3446655555544455 67789999999999999887788899999999999999764222222222 22222 134
Q ss_pred eEEEEeeCCCCCC
Q psy38 92 VFALVGCKLDLLQ 104 (193)
Q Consensus 92 piilv~nK~Dl~~ 104 (193)
|+++|+||.|...
T Consensus 140 p~ivviNKiD~~~ 152 (720)
T TIGR00490 140 KPVLFINKVDRLI 152 (720)
T ss_pred CEEEEEEChhccc
Confidence 6679999999853
No 283
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.29 E-value=3.1e-06 Score=59.40 Aligned_cols=77 Identities=16% Similarity=0.088 Sum_probs=52.1
Q ss_pred hhhccCccEEEEEEeCCChhHHh--hHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEE
Q psy38 51 KSYYRNSVGALLVYDITSRASFE--HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHF 128 (193)
Q Consensus 51 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~ 128 (193)
...++.+|++++|+|+.++.+.. .+..|+... . .+.|+++|+||+|+..+ . ......++....+..++
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~-~~k~~iivlNK~DL~~~---~--~~~~~~~~~~~~~~~ii 75 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----D-PRKKNILLLNKADLLTE---E--QRKAWAEYFKKEGIVVV 75 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----c-CCCcEEEEEechhcCCH---H--HHHHHHHHHHhcCCeEE
Confidence 45678899999999998876544 334444332 1 24688899999998541 1 12234455556678899
Q ss_pred EecCCCCcC
Q psy38 129 ETSSRSGFQ 137 (193)
Q Consensus 129 ~~Sa~~~~~ 137 (193)
.+||.++.+
T Consensus 76 ~iSa~~~~~ 84 (141)
T cd01857 76 FFSALKENA 84 (141)
T ss_pred EEEecCCCc
Confidence 999998764
No 284
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=5.3e-06 Score=64.82 Aligned_cols=114 Identities=17% Similarity=0.133 Sum_probs=74.2
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS 112 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~ 112 (193)
-++.|.|.+|++-.-...-.-..=+|++++|.+++.+..--.....+..+.- ..-.-+++|.||.||.... ...-.
T Consensus 86 R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleI---igik~iiIvQNKIDlV~~E-~AlE~ 161 (415)
T COG5257 86 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEI---IGIKNIIIVQNKIDLVSRE-RALEN 161 (415)
T ss_pred EEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhh---hccceEEEEecccceecHH-HHHHH
Confidence 4678999999986433222223336999999999875332223222222221 1224678999999995521 11234
Q ss_pred HHHHHHHHHh---CCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 113 EAEAKAFASQ---NDILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 113 ~~~~~~~~~~---~~~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
+++.++|.+- .+.+++.+||..+.||+.+++.|.+.|-
T Consensus 162 y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 162 YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 5566666655 4579999999999999999988877654
No 285
>PRK13796 GTPase YqeH; Provisional
Probab=98.28 E-value=5.9e-06 Score=67.02 Aligned_cols=83 Identities=23% Similarity=0.265 Sum_probs=56.6
Q ss_pred cCcc-EEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHH----HHHHhCCC---c
Q psy38 55 RNSV-GALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAK----AFASQNDI---L 126 (193)
Q Consensus 55 ~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~----~~~~~~~~---~ 126 (193)
...+ .+++|+|+.+.. ..|...+..... +.|+++|+||+||.. +....+... .+++..++ .
T Consensus 67 ~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~--~kpviLViNK~DLl~----~~~~~~~i~~~l~~~~k~~g~~~~~ 135 (365)
T PRK13796 67 GDSDALVVNVVDIFDFN-----GSWIPGLHRFVG--NNPVLLVGNKADLLP----KSVKKNKVKNWLRQEAKELGLRPVD 135 (365)
T ss_pred cccCcEEEEEEECccCC-----CchhHHHHHHhC--CCCEEEEEEchhhCC----CccCHHHHHHHHHHHHHhcCCCcCc
Confidence 3444 889999987632 234555554432 467889999999954 223333333 34555665 5
Q ss_pred EEEecCCCCcCHHHHHHHHHHH
Q psy38 127 HFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 127 ~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
++.+||+++.|+++++..+.+.
T Consensus 136 v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 136 VVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8899999999999999999654
No 286
>KOG0099|consensus
Probab=98.26 E-value=4.8e-06 Score=63.33 Aligned_cols=140 Identities=13% Similarity=0.103 Sum_probs=94.3
Q ss_pred cCCCCCcce---------eeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC----------h
Q psy38 9 IQISDPTVG---------VDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS----------R 69 (193)
Q Consensus 9 ~~~~~pt~~---------~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~ 69 (193)
..+|.|+.. ..++...+.+ ..+.++.+|.+|+..-+..|...+.++.++|||.+.+. .
T Consensus 172 ~~~Y~Ps~qDiLrcRvlTsGIfet~FqV---dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~q 248 (379)
T KOG0099|consen 172 QADYVPSDQDILRCRVLTSGIFETKFQV---DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQ 248 (379)
T ss_pred ccCCCCcHHHHHHhhhhccceeeEEEec---cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCch
Confidence 557777641 1234444555 34779999999999999999999999999999998874 2
Q ss_pred hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCC------C--------------CC---------CccCH------H
Q psy38 70 ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQS------G--------------VP---------REVSE------A 114 (193)
Q Consensus 70 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------~--------------~~---------~~v~~------~ 114 (193)
..+.+....+..++++.-...+.+|++.||.|+... . +. +.+.. +
T Consensus 249 NRL~EaL~LFksiWnNRwL~tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird 328 (379)
T KOG0099|consen 249 NRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRD 328 (379)
T ss_pred hHHHHHHHHHHHHHhhhHHhhhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhh
Confidence 345566667777877765667889999999998321 0 00 00000 1
Q ss_pred HHHHHHHh-----CCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 115 EAKAFASQ-----NDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 115 ~~~~~~~~-----~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
+-...... +.+.+..++|.+.++|..+|...-+.|..
T Consensus 329 ~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrVFnDcrdiIqr 370 (379)
T KOG0099|consen 329 EFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR 370 (379)
T ss_pred hHhhhccccCCCceecccceeEeechHHHHHHHHHHHHHHHH
Confidence 11111111 23556679999999999999987665554
No 287
>KOG1144|consensus
Probab=98.25 E-value=8.7e-06 Score=69.78 Aligned_cols=112 Identities=22% Similarity=0.185 Sum_probs=76.8
Q ss_pred EEEEeeCCCccccccchhhhccCccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCC---
Q psy38 34 KLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS---RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGV--- 107 (193)
Q Consensus 34 ~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--- 107 (193)
-+.++||+|++.|..++......||.+|+|.|+.. +++.+.+. .+. ....|+|++.||+|....+.
T Consensus 541 g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~----lLR----~rktpFivALNKiDRLYgwk~~p 612 (1064)
T KOG1144|consen 541 GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN----LLR----MRKTPFIVALNKIDRLYGWKSCP 612 (1064)
T ss_pred eeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHH----HHH----hcCCCeEEeehhhhhhcccccCC
Confidence 46889999999999999999999999999999975 34444331 122 34589999999999754321
Q ss_pred CCccC------------------HHHHHHHHHh-C-------------CCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 108 PREVS------------------EAEAKAFASQ-N-------------DILHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 108 ~~~v~------------------~~~~~~~~~~-~-------------~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
...+. .....+|+.. + .+.++.+||.+|.||-+++.+|++..-..+
T Consensus 613 ~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m 690 (1064)
T KOG1144|consen 613 NAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM 690 (1064)
T ss_pred CchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence 11110 0112233332 1 135778999999999999999988755443
No 288
>KOG1423|consensus
Probab=98.25 E-value=1.6e-05 Score=61.84 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=69.8
Q ss_pred CcEEEEEEeeCCCccccc------------cchhhhccCccEEEEEEeCCChhHHhhH-HHHHHHHHHhcCCCCCeEEEE
Q psy38 30 GARIKLQLWDTAGQERFR------------SITKSYYRNSVGALLVYDITSRASFEHI-PVWMMEAKRHIEPHRPVFALV 96 (193)
Q Consensus 30 ~~~~~l~l~D~~g~~~~~------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv 96 (193)
....++.|+||+|.-.-. +.....+.++|++++++|+++.- ..+ .+.+..+..+. .+|-++|
T Consensus 117 s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr--~~l~p~vl~~l~~ys---~ips~lv 191 (379)
T KOG1423|consen 117 SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATR--TPLHPRVLHMLEEYS---KIPSILV 191 (379)
T ss_pred cCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCc--CccChHHHHHHHHHh---cCCceee
Confidence 356889999999953211 11234566899999999999621 112 22333344443 3566699
Q ss_pred eeCCCCCCCC----------CCCccCHHHHHHHHHh-CCC----------------cEEEecCCCCcCHHHHHHHHHHHH
Q psy38 97 GCKLDLLQSG----------VPREVSEAEAKAFASQ-NDI----------------LHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 97 ~nK~Dl~~~~----------~~~~v~~~~~~~~~~~-~~~----------------~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
.||.|....- ....++. ...+...+ ... .+|.+||++|.||+++-++++.++
T Consensus 192 mnkid~~k~k~~Ll~l~~~Lt~g~l~~-~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 192 MNKIDKLKQKRLLLNLKDLLTNGELAK-LKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred ccchhcchhhhHHhhhHHhccccccch-hhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 9999974310 0111111 01111111 111 389999999999999999999865
Q ss_pred HH
Q psy38 150 YN 151 (193)
Q Consensus 150 ~~ 151 (193)
-.
T Consensus 271 ~~ 272 (379)
T KOG1423|consen 271 PP 272 (379)
T ss_pred CC
Confidence 43
No 289
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.23 E-value=5.7e-06 Score=55.92 Aligned_cols=98 Identities=17% Similarity=0.053 Sum_probs=68.2
Q ss_pred EeeCCCc----cccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38 37 LWDTAGQ----ERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS 112 (193)
Q Consensus 37 l~D~~g~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~ 112 (193)
.+||+|. ..+....-....++|+++++-+++++.|.-.- .+. .....|+|-|.+|+||.++ -.
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p-----~f~---~~~~k~vIgvVTK~DLaed-----~d 107 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPP-----GFL---DIGVKKVIGVVTKADLAED-----AD 107 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCc-----ccc---cccccceEEEEecccccch-----Hh
Confidence 4678874 22222234456789999999999987542211 111 2334568899999999652 34
Q ss_pred HHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHH
Q psy38 113 EAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 113 ~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
.+..+.+....|. ++|++|+.++.|++++++.+..
T Consensus 108 I~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 108 ISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred HHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 4566677777887 8999999999999999998765
No 290
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.23 E-value=1.1e-05 Score=63.30 Aligned_cols=112 Identities=17% Similarity=0.168 Sum_probs=75.7
Q ss_pred EEEEEeeCCCccc--cccc------hhhhcc-CccEEEEEEeCCCh--hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCC
Q psy38 33 IKLQLWDTAGQER--FRSI------TKSYYR-NSVGALLVYDITSR--ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLD 101 (193)
Q Consensus 33 ~~l~l~D~~g~~~--~~~~------~~~~~~-~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 101 (193)
.++|+.||||.-+ ...+ .-..++ =.++++|+||.+.. .+.+.-..++.++..... .|+++|.||+|
T Consensus 215 ~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~---~p~v~V~nK~D 291 (346)
T COG1084 215 LRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK---APIVVVINKID 291 (346)
T ss_pred ceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC---CCeEEEEeccc
Confidence 5899999999632 1111 111222 25889999999864 466666778888988763 78999999999
Q ss_pred CCCCCCCCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 102 LLQSGVPREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 102 l~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
+.. .. ..+++.......+ .....+++..+.+++.+-..+...+.+.
T Consensus 292 ~~~---~e--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 292 IAD---EE--KLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred ccc---hh--HHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHHhhch
Confidence 854 12 2233333333333 4577889999999998888887766554
No 291
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=3.4e-06 Score=65.12 Aligned_cols=110 Identities=19% Similarity=0.166 Sum_probs=75.8
Q ss_pred eeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh---hHHhhHHHHHHHHHHhcCCCCCeE
Q psy38 17 GVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR---ASFEHIPVWMMEAKRHIEPHRPVF 93 (193)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~pi 93 (193)
|+.+....+.+ .-.+-++-..|++|+.+|-+.......++|+.|+|.++++. ++.+++ +-...-..+.+
T Consensus 60 GITIntahvey-et~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi-------LlarqvGvp~i 131 (394)
T COG0050 60 GITINTAHVEY-ETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI-------LLARQVGVPYI 131 (394)
T ss_pred CceeccceeEE-ecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh-------hhhhhcCCcEE
Confidence 44555555566 55667788999999999988777778899999999999983 343332 21112334678
Q ss_pred EEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-----cEEEecCCC
Q psy38 94 ALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-----LHFETSSRS 134 (193)
Q Consensus 94 ilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~Sa~~ 134 (193)
+++.||+|+.++...-..-..+.+++...+++ +++.-||..
T Consensus 132 vvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ 177 (394)
T COG0050 132 VVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALK 177 (394)
T ss_pred EEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhh
Confidence 88999999977432233345667777777664 577777664
No 292
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.22 E-value=1.9e-05 Score=61.79 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=36.9
Q ss_pred CeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 91 PVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 91 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
.|.|.|.||.|+.. .++...+.+.. .++.+||..+.|++++.+.|.+.+
T Consensus 240 ~p~l~v~NKiD~~~--------~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 240 KPALYVVNKIDLPG--------LEELERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred eeeEEEEecccccC--------HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 68889999999843 33333344333 788999999999999999888764
No 293
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.21 E-value=1.1e-05 Score=60.07 Aligned_cols=102 Identities=11% Similarity=0.059 Sum_probs=60.6
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS 112 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~ 112 (193)
....+.++.|..-.....+ .+ ++.+|.|+|+.+.++... .+..++.. .- ++++||+|+... ....
T Consensus 92 ~D~iiIEt~G~~l~~~~~~-~l--~~~~i~vvD~~~~~~~~~--~~~~qi~~------ad-~~~~~k~d~~~~---~~~~ 156 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP-EL--ADLTIFVIDVAAGDKIPR--KGGPGITR------SD-LLVINKIDLAPM---VGAD 156 (199)
T ss_pred CCEEEEECCCCCcccccch-hh--hCcEEEEEEcchhhhhhh--hhHhHhhh------cc-EEEEEhhhcccc---cccc
Confidence 3445677777321111111 11 578999999987554321 11112210 12 589999999641 1112
Q ss_pred HHHHHHHHHh--CCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 113 EAEAKAFASQ--NDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 113 ~~~~~~~~~~--~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
.+...+..+. .+.+++++||++|.|++++|+++.+..
T Consensus 157 ~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 157 LGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 2333333333 457999999999999999999998754
No 294
>KOG1191|consensus
Probab=98.18 E-value=7.7e-06 Score=67.13 Aligned_cols=132 Identities=21% Similarity=0.153 Sum_probs=82.7
Q ss_pred eeeEEEEEEEecCCcEEEEEEeeCCCccc-ccc--------chhhhccCccEEEEEEeC--CChhHHhhHHHHHHHHHHh
Q psy38 17 GVDFFARLVTMRDGARIKLQLWDTAGQER-FRS--------ITKSYYRNSVGALLVYDI--TSRASFEHIPVWMMEAKRH 85 (193)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-~~~--------~~~~~~~~~d~~i~v~d~--~~~~s~~~~~~~~~~i~~~ 85 (193)
..|-....+++ +| +.+.+.||+|..+ -.. ..+..++.+|++++|+|+ ++-++-..+.+.++....-
T Consensus 303 TRDaiea~v~~-~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g 379 (531)
T KOG1191|consen 303 TRDAIEAQVTV-NG--VPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVG 379 (531)
T ss_pred chhhheeEeec-CC--eEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccc
Confidence 35777888888 88 6678999999765 111 124567789999999999 3323322333333333322
Q ss_pred cC-----CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC---CCc-EEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38 86 IE-----PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN---DIL-HFETSSRSGFQVENAFTAVTQEIYNRVQ 154 (193)
Q Consensus 86 ~~-----~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~---~~~-~~~~Sa~~~~~i~e~f~~i~~~i~~~~~ 154 (193)
.. ...-+++++.||.|+..+.+ ..+.. ...+.... ..+ ..++|+++++|++++...+.........
T Consensus 380 ~~~~~~~~~~~~~i~~~nk~D~~s~~~--~~~~~-~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 380 LVVIVNKMEKQRIILVANKSDLVSKIP--EMTKI-PVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred eEEEeccccccceEEEechhhccCccc--cccCC-ceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 11 12367889999999976411 11110 00111111 133 4469999999999999999998877655
No 295
>KOG3905|consensus
Probab=98.16 E-value=2.8e-05 Score=60.99 Aligned_cols=150 Identities=13% Similarity=0.186 Sum_probs=100.0
Q ss_pred eeeeeec--cCCCCCcceeeEEEEEEEecCC--cEEEEEEeeCCCccccccchhhhccCc----cEEEEEEeCCCh-hHH
Q psy38 2 VTLLYLY--IQISDPTVGVDFFARLVTMRDG--ARIKLQLWDTAGQERFRSITKSYYRNS----VGALLVYDITSR-ASF 72 (193)
Q Consensus 2 ~sll~r~--~~~~~pt~~~~~~~~~~~~~~~--~~~~l~l~D~~g~~~~~~~~~~~~~~~----d~~i~v~d~~~~-~s~ 72 (193)
+|||.++ .+++.+.-|.+|.+-.+.- +. ...++.+|-..|..-...+....+.-. ..+|++.|++++ .-+
T Consensus 66 tsLi~klqg~e~~KkgsgLeY~yl~V~d-e~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlviltasms~Pw~~l 144 (473)
T KOG3905|consen 66 TSLISKLQGSETVKKGSGLEYLYLHVHD-EDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVILTASMSNPWTLL 144 (473)
T ss_pred hHHHHHhhcccccCCCCCcceEEEeccc-ccchhhhhcceEEecCchhhhhHHhhcccccCccceEEEEEEecCCcHHHH
Confidence 4667777 6677777676666555543 22 235778898877654444444433322 468899999998 556
Q ss_pred hhHHHHHHHHHHhcCC------------------------------------------------------------CCCe
Q psy38 73 EHIPVWMMEAKRHIEP------------------------------------------------------------HRPV 92 (193)
Q Consensus 73 ~~~~~~~~~i~~~~~~------------------------------------------------------------~~~p 92 (193)
+.+.+|..-+.++... -.+|
T Consensus 145 esLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~ 224 (473)
T KOG3905|consen 145 ESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIP 224 (473)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccccccCCcchhhcCCCc
Confidence 6677777655443310 0289
Q ss_pred EEEEeeCCCCCC----CCCCCcc----CHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 93 FALVGCKLDLLQ----SGVPREV----SEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 93 iilv~nK~Dl~~----~~~~~~v----~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
+++|.||+|... ...-+.. -....+.||-++|...+.+|++...|++-+...|++.++--
T Consensus 225 vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG~ 292 (473)
T KOG3905|consen 225 VLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYGF 292 (473)
T ss_pred EEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcCc
Confidence 999999999832 1000111 12446688888999999999999999999999999987653
No 296
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.15 E-value=3.5e-05 Score=65.76 Aligned_cols=119 Identities=12% Similarity=0.088 Sum_probs=81.0
Q ss_pred eeEEEEEEEecCCcEEEEEEeeCCCccccc------cchhhhcc--CccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCC
Q psy38 18 VDFFARLVTMRDGARIKLQLWDTAGQERFR------SITKSYYR--NSVGALLVYDITSRASFEHIPVWMMEAKRHIEPH 89 (193)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 89 (193)
++...-.+.. .| -.+++.|.||-=... ...+.|+. ..|++|-+.|+++.+. --+.--++.+.
T Consensus 38 VEkkeg~~~~-~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeR---nLyltlQLlE~---- 107 (653)
T COG0370 38 VEKKEGKLKY-KG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLER---NLYLTLQLLEL---- 107 (653)
T ss_pred EEEEEEEEEe-cC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHH---HHHHHHHHHHc----
Confidence 4555555555 55 348899999852211 12234443 5699999999998542 22222344544
Q ss_pred CCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 90 RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 90 ~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
+.|++++.|+.|..+ .+.+ .-+...+.+..|++++.+||++|.|++++..++++..-
T Consensus 108 g~p~ilaLNm~D~A~---~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 108 GIPMILALNMIDEAK---KRGI-RIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAE 164 (653)
T ss_pred CCCeEEEeccHhhHH---hcCC-cccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhcc
Confidence 378999999999865 2333 23345788889999999999999999999999886433
No 297
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.14 E-value=7.6e-06 Score=59.28 Aligned_cols=91 Identities=13% Similarity=0.040 Sum_probs=59.5
Q ss_pred cchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcE
Q psy38 48 SITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127 (193)
Q Consensus 48 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~ 127 (193)
......++++|.+++++|++++..-... .+ .... ...|+++|.||+|+... .. .....++.+..+..+
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i----~~~~--~~k~~ilVlNK~Dl~~~---~~--~~~~~~~~~~~~~~v 78 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-LL----EKIL--GNKPRIIVLNKADLADP---KK--TKKWLKYFESKGEKV 78 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCCh-hh----HhHh--cCCCEEEEEehhhcCCh---HH--HHHHHHHHHhcCCeE
Confidence 3446678899999999999875432221 12 2211 12567799999998531 11 112223333445578
Q ss_pred EEecCCCCcCHHHHHHHHHHHHH
Q psy38 128 FETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 128 ~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
+.+||+++.|++++...+...+.
T Consensus 79 i~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 79 LFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred EEEECCCcccHHHHHHHHHHHHH
Confidence 89999999999999999888753
No 298
>PRK00007 elongation factor G; Reviewed
Probab=98.13 E-value=1.9e-05 Score=69.21 Aligned_cols=81 Identities=19% Similarity=0.200 Sum_probs=55.2
Q ss_pred ceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEE
Q psy38 16 VGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFAL 95 (193)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 95 (193)
+.++.....+.+ ++ ..+.|.||+|+.+|.......+..+|++++|+|+.....-++...| ..+... ..|+++
T Consensus 61 ~ti~~~~~~~~~-~~--~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~~----~~p~iv 132 (693)
T PRK00007 61 ITITSAATTCFW-KD--HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADKY----KVPRIA 132 (693)
T ss_pred CCEeccEEEEEE-CC--eEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHHc----CCCEEE
Confidence 334444455555 44 6789999999988766566778899999999998765333332222 233332 367789
Q ss_pred EeeCCCCCC
Q psy38 96 VGCKLDLLQ 104 (193)
Q Consensus 96 v~nK~Dl~~ 104 (193)
+.||+|+..
T Consensus 133 ~vNK~D~~~ 141 (693)
T PRK00007 133 FVNKMDRTG 141 (693)
T ss_pred EEECCCCCC
Confidence 999999863
No 299
>KOG0458|consensus
Probab=98.11 E-value=2.9e-05 Score=64.94 Aligned_cols=121 Identities=18% Similarity=0.115 Sum_probs=80.4
Q ss_pred cceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh---hHHhhHH--HHHHHHHHhcCCC
Q psy38 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR---ASFEHIP--VWMMEAKRHIEPH 89 (193)
Q Consensus 15 t~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~--~~~~~i~~~~~~~ 89 (193)
--|+........+ +-....+.+.|.||+..|.........++|++|+|.|++-. ..|+.-. +-...+.... +
T Consensus 238 erGvTm~v~~~~f-es~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L--g 314 (603)
T KOG0458|consen 238 ERGVTMDVKTTWF-ESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL--G 314 (603)
T ss_pred hcceeEEeeeEEE-ecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc--C
Confidence 3345555555556 66778899999999999988777888899999999999752 1333211 1222233332 2
Q ss_pred CCeEEEEeeCCCCCCCCCCCccCHHHHH----HHH-HhCC-----CcEEEecCCCCcCHHHH
Q psy38 90 RPVFALVGCKLDLLQSGVPREVSEAEAK----AFA-SQND-----ILHFETSSRSGFQVENA 141 (193)
Q Consensus 90 ~~piilv~nK~Dl~~~~~~~~v~~~~~~----~~~-~~~~-----~~~~~~Sa~~~~~i~e~ 141 (193)
..-++++.||.|+.+ +.+-..+++. .|. +..| +.++.||+.+|+|+...
T Consensus 315 i~qlivaiNKmD~V~---Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 315 ISQLIVAINKMDLVS---WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cceEEEEeecccccC---ccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 456779999999876 4333333333 334 3333 57999999999998654
No 300
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=4.5e-05 Score=61.98 Aligned_cols=119 Identities=18% Similarity=0.104 Sum_probs=80.0
Q ss_pred eeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcCCCCCeEE
Q psy38 18 VDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS---RASFEHIPVWMMEAKRHIEPHRPVFA 94 (193)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~pii 94 (193)
+|+...+... +. ..+.|.|.+|++++-...-..+...|.+++|.+.++ +++.+.+ .+....+ ..-.+
T Consensus 38 iDlg~~y~~~-~d--~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL-----~iLdllg--i~~gi 107 (447)
T COG3276 38 IDLGFYYRKL-ED--GVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHL-----LILDLLG--IKNGI 107 (447)
T ss_pred EeeeeEeccC-CC--CceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHH-----HHHHhcC--CCceE
Confidence 4555555555 22 378999999999987766667778999999999965 3343333 2233222 24556
Q ss_pred EEeeCCCCCCCCCCCccCHHHHHHHHHh---CCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 95 LVGCKLDLLQSGVPREVSEAEAKAFASQ---NDILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 95 lv~nK~Dl~~~~~~~~v~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
+|.||.|+.+. . -..+...+.... .+.+++.+|+.+|.||+++-..|.+..-
T Consensus 108 ivltk~D~~d~---~-r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 108 IVLTKADRVDE---A-RIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred EEEeccccccH---H-HHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 99999998652 1 111222222222 3457899999999999999999999874
No 301
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.08 E-value=2.4e-05 Score=61.13 Aligned_cols=90 Identities=16% Similarity=0.099 Sum_probs=59.9
Q ss_pred hhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEE
Q psy38 50 TKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129 (193)
Q Consensus 50 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~ 129 (193)
....++.+|++++|.|+..+.+-.+ .++..+. .+.|+++|.||+|+.. ... ...-.++....+..++.
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~---~~~--~~~~~~~~~~~~~~vi~ 82 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLAD---PAV--TKQWLKYFEEKGIKALA 82 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCC---HHH--HHHHHHHHHHcCCeEEE
Confidence 4567889999999999977644322 1222222 1368889999999843 111 11112223335667899
Q ss_pred ecCCCCcCHHHHHHHHHHHHHH
Q psy38 130 TSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 130 ~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
+||+++.|++++...+.+.+-.
T Consensus 83 iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 83 INAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred EECCCcccHHHHHHHHHHHHHH
Confidence 9999999999999888776643
No 302
>PRK01889 GTPase RsgA; Reviewed
Probab=98.05 E-value=2.4e-05 Score=63.26 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=56.9
Q ss_pred ccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH-hCCCcEEEecC
Q psy38 54 YRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS-QNDILHFETSS 132 (193)
Q Consensus 54 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-~~~~~~~~~Sa 132 (193)
..++|.+++|+++..+.+...+.+++..+... +.+.+||.||+||..+ ..+....+.. ..+++++.+|+
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~----~i~piIVLNK~DL~~~------~~~~~~~~~~~~~g~~Vi~vSa 179 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES----GAEPVIVLTKADLCED------AEEKIAEVEALAPGVPVLAVSA 179 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc----CCCEEEEEEChhcCCC------HHHHHHHHHHhCCCCcEEEEEC
Confidence 57899999999997444444556666655543 2344689999999641 1111122222 35679999999
Q ss_pred CCCcCHHHHHHHHH
Q psy38 133 RSGFQVENAFTAVT 146 (193)
Q Consensus 133 ~~~~~i~e~f~~i~ 146 (193)
+++.|++++..++.
T Consensus 180 ~~g~gl~~L~~~L~ 193 (356)
T PRK01889 180 LDGEGLDVLAAWLS 193 (356)
T ss_pred CCCccHHHHHHHhh
Confidence 99999999888874
No 303
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.04 E-value=3.6e-05 Score=57.52 Aligned_cols=55 Identities=16% Similarity=0.058 Sum_probs=39.4
Q ss_pred CeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC--CCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 91 PVFALVGCKLDLLQSGVPREVSEAEAKAFASQN--DILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 91 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
.|.++++||+|+.+. .........+..++. ..+++++||+++.|++++|+++.+.
T Consensus 149 ~a~iiv~NK~Dl~~~---~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 149 EADLIVINKADLAEA---VGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hCCEEEEEHHHcccc---chhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 456799999999641 122233343444433 3789999999999999999999874
No 304
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.01 E-value=6.8e-05 Score=61.44 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=28.0
Q ss_pred EEEEEEeeCCCcc----ccccchhhh---ccCccEEEEEEeCC
Q psy38 32 RIKLQLWDTAGQE----RFRSITKSY---YRNSVGALLVYDIT 67 (193)
Q Consensus 32 ~~~l~l~D~~g~~----~~~~~~~~~---~~~~d~~i~v~d~~ 67 (193)
.+.+++||++|.. ....+...+ ++++|++++|+|+.
T Consensus 71 ~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 71 FIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred eeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 3789999999953 333455566 88999999999996
No 305
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.98 E-value=5.5e-05 Score=59.46 Aligned_cols=91 Identities=15% Similarity=0.091 Sum_probs=61.0
Q ss_pred hhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEE
Q psy38 50 TKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129 (193)
Q Consensus 50 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~ 129 (193)
....++.+|++++|.|+.++.+... .++..+.. ..|+++|.||+|+.. .. ......++....+..++.
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~-----~kp~iiVlNK~DL~~----~~-~~~~~~~~~~~~~~~vi~ 85 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG-----NKPRLLILNKSDLAD----PE-VTKKWIEYFEEQGIKALA 85 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC-----CCCEEEEEEchhcCC----HH-HHHHHHHHHHHcCCeEEE
Confidence 4567889999999999977644332 22222222 367889999999843 11 112222333344677899
Q ss_pred ecCCCCcCHHHHHHHHHHHHHHH
Q psy38 130 TSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 130 ~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
+||.++.|++++...+...+-..
T Consensus 86 vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 86 INAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred EECCCcccHHHHHHHHHHHHHHH
Confidence 99999999999999887766443
No 306
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.98 E-value=0.0001 Score=58.85 Aligned_cols=111 Identities=14% Similarity=-0.002 Sum_probs=67.4
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS 112 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~ 112 (193)
+.+.|.||+|...-. ......+|.++++.+....+.+.... ..+.+.. -++|.||+|+..... ..-.
T Consensus 149 ~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E~a------DIiVVNKaDl~~~~~-a~~~ 215 (332)
T PRK09435 149 YDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIK---KGIMELA------DLIVINKADGDNKTA-ARRA 215 (332)
T ss_pred CCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHH---hhhhhhh------heEEeehhcccchhH-HHHH
Confidence 667899999975322 22466799999997644444443322 2233321 259999999865210 0001
Q ss_pred HHHHHHHHHh-------CCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38 113 EAEAKAFASQ-------NDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG 156 (193)
Q Consensus 113 ~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~ 156 (193)
..+....... +..+++.+||.++.||+++++++.+..-...+.+
T Consensus 216 ~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~sg 266 (332)
T PRK09435 216 AAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTASG 266 (332)
T ss_pred HHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccCC
Confidence 1111111111 2258999999999999999999999766544444
No 307
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=6.3e-05 Score=61.19 Aligned_cols=101 Identities=16% Similarity=0.029 Sum_probs=66.6
Q ss_pred eeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEe
Q psy38 18 VDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVG 97 (193)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 97 (193)
+...+..++. +-....+.+.||||+++|..-.-..+.-+|.+++|.|+...-.-+ ..+ +.+.+...++||+-+.
T Consensus 67 ISVtsSVMqF-~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~q-T~K----LfeVcrlR~iPI~TFi 140 (528)
T COG4108 67 ISVTSSVMQF-DYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQ-TLK----LFEVCRLRDIPIFTFI 140 (528)
T ss_pred ceEEeeEEEe-ccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHH-HHH----HHHHHhhcCCceEEEe
Confidence 3444444444 445688999999999998876666677799999999997632111 122 2333445579999999
Q ss_pred eCCCCCCCCCCCccCHHHHHHHHHhCCCcEEE
Q psy38 98 CKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129 (193)
Q Consensus 98 nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~ 129 (193)
||.|.... -+.+...+....+++.++.
T Consensus 141 NKlDR~~r-----dP~ELLdEiE~~L~i~~~P 167 (528)
T COG4108 141 NKLDREGR-----DPLELLDEIEEELGIQCAP 167 (528)
T ss_pred eccccccC-----ChHHHHHHHHHHhCcceec
Confidence 99998652 3455555565665554443
No 308
>KOG3886|consensus
Probab=97.93 E-value=2.1e-05 Score=58.85 Aligned_cols=101 Identities=21% Similarity=0.307 Sum_probs=62.3
Q ss_pred EEEEEEeeCCCcccccc-----chhhhccCccEEEEEEeCCChhHHhhHHH---HHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38 32 RIKLQLWDTAGQERFRS-----ITKSYYRNSVGALLVYDITSRASFEHIPV---WMMEAKRHIEPHRPVFALVGCKLDLL 103 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~-----~~~~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~i~~~~~~~~~piilv~nK~Dl~ 103 (193)
++.+.+||++|++.+-+ .....+++.+++|++||++..+--.++.+ -++.+.++ .+...+.+..+|.||.
T Consensus 52 nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv 129 (295)
T KOG3886|consen 52 NLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLV 129 (295)
T ss_pred hheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhc
Confidence 37889999999985322 34567889999999999987653333333 34444443 4456777899999996
Q ss_pred CCCCCCccC---HHHHHHHHHhCCCcEEEecCCC
Q psy38 104 QSGVPREVS---EAEAKAFASQNDILHFETSSRS 134 (193)
Q Consensus 104 ~~~~~~~v~---~~~~~~~~~~~~~~~~~~Sa~~ 134 (193)
.......+. .+....+....++.++.+|.-+
T Consensus 130 ~~d~r~~if~~r~~~l~~~s~~~~~~~f~TsiwD 163 (295)
T KOG3886|consen 130 QEDARELIFQRRKEDLRRLSRPLECKCFPTSIWD 163 (295)
T ss_pred ccchHHHHHHHHHHHHHHhcccccccccccchhh
Confidence 521111111 1222233333456777776553
No 309
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.90 E-value=0.00012 Score=57.25 Aligned_cols=95 Identities=15% Similarity=0.117 Sum_probs=68.0
Q ss_pred ccchhhhccCccEEEEEEeCCChh-HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC
Q psy38 47 RSITKSYYRNSVGALLVYDITSRA-SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI 125 (193)
Q Consensus 47 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~ 125 (193)
..+.+.-+.+.|-+++++++.+|+ +..-+.+++--.... .-.|+ ++.||+||.++ .....++........++
T Consensus 70 n~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pv-IvlnK~DL~~~---~~~~~~~~~~~y~~~gy 142 (301)
T COG1162 70 NVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPV-IVLNKIDLLDD---EEAAVKELLREYEDIGY 142 (301)
T ss_pred CceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEE-EEEEccccCcc---hHHHHHHHHHHHHhCCe
Confidence 344555566788888888888875 666677776655543 23566 88999999763 11111445567777899
Q ss_pred cEEEecCCCCcCHHHHHHHHHHH
Q psy38 126 LHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 126 ~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
+.+.+|++++.+++++...+...
T Consensus 143 ~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 143 PVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred eEEEecCcCcccHHHHHHHhcCC
Confidence 99999999999999998887654
No 310
>KOG1490|consensus
Probab=97.89 E-value=6.6e-05 Score=62.02 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=79.9
Q ss_pred EEEEEeeCCCcccccc----chh-----hhccCccEEEEEEeCCCh--hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCC
Q psy38 33 IKLQLWDTAGQERFRS----ITK-----SYYRNSVGALLVYDITSR--ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLD 101 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~----~~~-----~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 101 (193)
...++.||||.-+... .++ ...+=-.+|+|++|++.. .|..+-...+..|+... .+.|.|+|.||+|
T Consensus 215 lrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF--aNK~~IlvlNK~D 292 (620)
T KOG1490|consen 215 LRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF--ANKVTILVLNKID 292 (620)
T ss_pred eeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh--cCCceEEEeeccc
Confidence 5678889999643111 111 111223678999999874 45666566777777764 4578889999999
Q ss_pred CCCCCCCCccCHHH---HHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 102 LLQSGVPREVSEAE---AKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 102 l~~~~~~~~v~~~~---~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
+.. ...++.+. ...+....+++++++|..+.+||.++-....+.++...
T Consensus 293 ~m~---~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~R 344 (620)
T KOG1490|consen 293 AMR---PEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALLAAR 344 (620)
T ss_pred ccC---ccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHHHHHH
Confidence 866 33444433 33444445689999999999999999999988888764
No 311
>KOG0085|consensus
Probab=97.82 E-value=1.6e-05 Score=59.50 Aligned_cols=144 Identities=17% Similarity=0.123 Sum_probs=95.8
Q ss_pred cCCCCCcceeeEEEEEEEec-------CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC----------hhH
Q psy38 9 IQISDPTVGVDFFARLVTMR-------DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS----------RAS 71 (193)
Q Consensus 9 ~~~~~pt~~~~~~~~~~~~~-------~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s 71 (193)
.+.|.||- .|.....+... +-.++.+++.|.+|+..-+..|.+.++++..++|+..++. .+.
T Consensus 169 ~~~ylPTq-QDvLRvRvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENR 247 (359)
T KOG0085|consen 169 TPGYLPTQ-QDVLRVRVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENR 247 (359)
T ss_pred CcccCcch-hhhheeecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhh
Confidence 56677764 23333333220 2245778899999999999999999999888888776643 344
Q ss_pred HhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC-------------CCCccCHHHHHHHHHh----CC------CcEE
Q psy38 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG-------------VPREVSEAEAKAFASQ----ND------ILHF 128 (193)
Q Consensus 72 ~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-------------~~~~v~~~~~~~~~~~----~~------~~~~ 128 (193)
+++....+..|..+-=..+.++|++.||.|+.++- ....-....+++|.-+ ++ +.-.
T Consensus 248 MeESkALFrTIi~yPWF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SH 327 (359)
T KOG0085|consen 248 MEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSH 327 (359)
T ss_pred HHHHHHHHHHHhccccccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeee
Confidence 55555566666665445578899999999986531 0112223444455443 22 2344
Q ss_pred EecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 129 ETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 129 ~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
.++|.+..||.-+|.++-+.++...
T Consensus 328 fTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 328 FTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred eeecccchhHHHHHHHHHHHHHHhh
Confidence 6889999999999999998888754
No 312
>KOG0460|consensus
Probab=97.77 E-value=6.7e-05 Score=59.23 Aligned_cols=109 Identities=20% Similarity=0.170 Sum_probs=75.4
Q ss_pred eeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh---hHHhhHHHHHHHHHHhcCCCCCeE
Q psy38 17 GVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR---ASFEHIPVWMMEAKRHIEPHRPVF 93 (193)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~pi 93 (193)
|+.+....+.+ ...+-++--.|++|+.+|-.....-..+.|++|+|.+++|. ++-+++ --.++ -...-+
T Consensus 102 GITIn~aHveY-eTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHl----LLArQ---VGV~~i 173 (449)
T KOG0460|consen 102 GITINAAHVEY-ETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHL----LLARQ---VGVKHI 173 (449)
T ss_pred cceEeeeeeee-eccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHH----HHHHH---cCCceE
Confidence 55666666666 65666777899999999988777777889999999999984 333332 11122 234567
Q ss_pred EEEeeCCCCCCCCCCCccCHHHHHHHHHhCC-----CcEEEecCC
Q psy38 94 ALVGCKLDLLQSGVPREVSEAEAKAFASQND-----ILHFETSSR 133 (193)
Q Consensus 94 ilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~Sa~ 133 (193)
+++.||.|+.++....++-+-+.+++...++ +|++.-||.
T Consensus 174 vvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 174 VVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSAL 218 (449)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchh
Confidence 8999999997543233344566778888766 467766544
No 313
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.75 E-value=0.00072 Score=51.69 Aligned_cols=113 Identities=17% Similarity=0.144 Sum_probs=56.6
Q ss_pred EEEEeeCCCccccccchhhhc--------cCccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38 34 KLQLWDTAGQERFRSITKSYY--------RNSVGALLVYDITS---RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL 102 (193)
Q Consensus 34 ~l~l~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 102 (193)
.+.++|||||.++-..+.... ...-+++++.|..- +..|-.. ++-.+.... .-..|.+.|.||+|+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~--~L~s~s~~~-~~~lP~vnvlsK~Dl 168 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSS--LLLSLSIML-RLELPHVNVLSKIDL 168 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHH--HHHHHHHHH-HHTSEEEEEE--GGG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHH--HHHHHHHHh-hCCCCEEEeeeccCc
Confidence 578999999987655544333 44567888888753 3334332 222211111 124799999999999
Q ss_pred CCCCCCCcc----------------CHHHHHHHHHh---CC-C-cEEEecCCCCcCHHHHHHHHHHHH
Q psy38 103 LQSGVPREV----------------SEAEAKAFASQ---ND-I-LHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 103 ~~~~~~~~v----------------~~~~~~~~~~~---~~-~-~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
......... ......+++.- .+ . .++.+|+.++.++++++..+-+.+
T Consensus 169 ~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 169 LSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp S-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 651100000 01111122222 33 3 688999999999999998876643
No 314
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.73 E-value=0.00023 Score=56.32 Aligned_cols=107 Identities=9% Similarity=-0.072 Sum_probs=63.1
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV 111 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v 111 (193)
.+.+.|.||+|..... ......+|.++++-... +-+++......+. ..|.++|.||+|+........+
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~------~~~~ivv~NK~Dl~~~~~~~~~ 193 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGLM------EIADIYVVNKADGEGATNVTIA 193 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHHh------hhccEEEEEcccccchhHHHHH
Confidence 3677899999854211 23456678888775433 3344444433333 2456799999998652100000
Q ss_pred CHH---HHHHHHHh---CCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 112 SEA---EAKAFASQ---NDILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 112 ~~~---~~~~~~~~---~~~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
... ....+... +..+++.+||+++.|+++++.++.+..-
T Consensus 194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 000 00111111 2246899999999999999999998744
No 315
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.70 E-value=0.00011 Score=64.79 Aligned_cols=71 Identities=27% Similarity=0.244 Sum_probs=51.4
Q ss_pred CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
++....+.|+||||+.+|.......+..+|++|+|+|+.....-+....|. ..... ..|.+++.||.|+..
T Consensus 83 ~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~~----~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 83 EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALRE----RVKPVLFINKVDRLI 153 (731)
T ss_pred cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHHc----CCCeEEEEECchhhc
Confidence 556788999999999998877788889999999999987653333223333 23322 235579999999753
No 316
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.67 E-value=0.00046 Score=46.45 Aligned_cols=71 Identities=18% Similarity=0.055 Sum_probs=42.6
Q ss_pred EEEEEEEecCCcEEEEEEeeCCCccccc---------cchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCC
Q psy38 20 FFARLVTMRDGARIKLQLWDTAGQERFR---------SITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHR 90 (193)
Q Consensus 20 ~~~~~~~~~~~~~~~l~l~D~~g~~~~~---------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 90 (193)
.....+.+ ++.. +.++||+|...-. ......+..+|++++|+|.+++.. +....++..+. ..
T Consensus 37 ~~~~~~~~-~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~-----~~ 107 (116)
T PF01926_consen 37 PVYGQFEY-NNKK--FILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPIT-EDDKNILRELK-----NK 107 (116)
T ss_dssp EEEEEEEE-TTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSH-HHHHHHHHHHH-----TT
T ss_pred eeeeeeee-ceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCC-HHHHHHHHHHh-----cC
Confidence 34445556 6644 4699999964311 112223478999999999877321 12223333332 34
Q ss_pred CeEEEEeeC
Q psy38 91 PVFALVGCK 99 (193)
Q Consensus 91 ~piilv~nK 99 (193)
.|+++|.||
T Consensus 108 ~~~i~v~NK 116 (116)
T PF01926_consen 108 KPIILVLNK 116 (116)
T ss_dssp SEEEEEEES
T ss_pred CCEEEEEcC
Confidence 789999998
No 317
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.59 E-value=0.00013 Score=65.38 Aligned_cols=68 Identities=25% Similarity=0.218 Sum_probs=51.6
Q ss_pred cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38 31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL 103 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 103 (193)
....+.|+||+|+.+|.......++.+|++|+|+|+...-.......|. .+... ..|++++.||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~-~~~~~----~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALGE----RIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHH-HHHHC----CCCEEEEEECCccc
Confidence 4678899999999999877788889999999999998754333333333 33332 36888999999985
No 318
>KOG0461|consensus
Probab=97.56 E-value=0.00057 Score=54.27 Aligned_cols=113 Identities=18% Similarity=0.224 Sum_probs=67.0
Q ss_pred CCcEEEEEEeeCCCccccccchhhhccC---ccEEEEEEeCCChhHHhhHHH-HHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 29 DGARIKLQLWDTAGQERFRSITKSYYRN---SVGALLVYDITSRASFEHIPV-WMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
.|...++.+.|++|+... ++..+.. .|..+++.|+.....-+.+.- .+.++.. ...++|.||+|+..
T Consensus 66 q~e~lq~tlvDCPGHasL---IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c------~klvvvinkid~lp 136 (522)
T KOG0461|consen 66 QGEQLQFTLVDCPGHASL---IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC------KKLVVVINKIDVLP 136 (522)
T ss_pred ccccceeEEEeCCCcHHH---HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc------cceEEEEecccccc
Confidence 456678899999999764 4444444 477899999976432233322 2223322 34568899999743
Q ss_pred CCCCCccCHHH-HHHHHHh---C----CCcEEEecCCCC----cCHHHHHHHHHHHHHH
Q psy38 105 SGVPREVSEAE-AKAFASQ---N----DILHFETSSRSG----FQVENAFTAVTQEIYN 151 (193)
Q Consensus 105 ~~~~~~v~~~~-~~~~~~~---~----~~~~~~~Sa~~~----~~i~e~f~~i~~~i~~ 151 (193)
+. .+....++ +....+. . +.+++++||..| ++|.|+...+-.++..
T Consensus 137 E~-qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 137 EN-QRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred ch-hhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 10 12222221 2222222 1 268999999999 6666666666666554
No 319
>KOG0468|consensus
Probab=97.56 E-value=0.00013 Score=62.27 Aligned_cols=69 Identities=25% Similarity=0.284 Sum_probs=55.4
Q ss_pred CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38 29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL 102 (193)
Q Consensus 29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 102 (193)
+++.+.+.+.||+|+-+|..-....++-+|++++++|+.+.-.++.- +.+.... ....|+++|+||.|.
T Consensus 193 ~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhai----q~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 193 KGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAI----QNRLPIVVVINKVDR 261 (971)
T ss_pred cCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHH----hccCcEEEEEehhHH
Confidence 67889999999999999988888899999999999999876655533 3333333 335789999999996
No 320
>PTZ00416 elongation factor 2; Provisional
Probab=97.49 E-value=0.0002 Score=64.14 Aligned_cols=68 Identities=24% Similarity=0.227 Sum_probs=51.2
Q ss_pred cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38 31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL 103 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 103 (193)
+...+.|.||+|+.+|.......++.+|++|+|+|+.+.-.-+. ...+..+... ..|++++.||+|+.
T Consensus 90 ~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~~----~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 90 QPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQE----RIRPVLFINKVDRA 157 (836)
T ss_pred CceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHHc----CCCEEEEEEChhhh
Confidence 35778999999999887777888899999999999987533332 2333344432 36888999999985
No 321
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00029 Score=61.48 Aligned_cols=68 Identities=25% Similarity=0.250 Sum_probs=53.3
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
...+.++|||||-+|..-....++-+|++|+|+|+...-..+.-.-|.+.... ..|.+++.||.|...
T Consensus 75 ~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~-----~vp~i~fiNKmDR~~ 142 (697)
T COG0480 75 DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY-----GVPRILFVNKMDRLG 142 (697)
T ss_pred ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc-----CCCeEEEEECccccc
Confidence 58899999999999998888899999999999999875444444445443332 367779999999754
No 322
>KOG1532|consensus
Probab=97.24 E-value=0.0047 Score=47.79 Aligned_cols=117 Identities=21% Similarity=0.178 Sum_probs=66.3
Q ss_pred EEEEEeeCCCccccc------cchhhhcc--CccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCC
Q psy38 33 IKLQLWDTAGQERFR------SITKSYYR--NSVGALLVYDITS---RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLD 101 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~------~~~~~~~~--~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 101 (193)
....+.|||||-+.- ..+...+. ...+++++.|... +.+|-.-.-+.-.|.- ....|+|+|.||+|
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSily---ktklp~ivvfNK~D 192 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILY---KTKLPFIVVFNKTD 192 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHH---hccCCeEEEEeccc
Confidence 556788999985421 12222233 2356667777633 4444433223333333 23589999999999
Q ss_pred CCCCCCC-CccCH----HHHHH---------HHHh---------CCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 102 LLQSGVP-REVSE----AEAKA---------FASQ---------NDILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 102 l~~~~~~-~~v~~----~~~~~---------~~~~---------~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
+.+.... ...++ +++.+ +... .++..+-|||.+|.|.+++|.++-..+-+.
T Consensus 193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 9662100 00111 11111 0000 235788999999999999999988776554
No 323
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.23 E-value=0.0015 Score=38.04 Aligned_cols=43 Identities=21% Similarity=0.164 Sum_probs=29.0
Q ss_pred ccEEEEEEeCCCh--hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCC
Q psy38 57 SVGALLVYDITSR--ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLD 101 (193)
Q Consensus 57 ~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 101 (193)
.++++|++|++.. .+.++-...+.+++... .+.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 5889999999874 46677677888888864 3589999999998
No 324
>COG3596 Predicted GTPase [General function prediction only]
Probab=97.17 E-value=0.0049 Score=47.63 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=73.8
Q ss_pred EEEEEeeCCCccc-------cccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCC
Q psy38 33 IKLQLWDTAGQER-------FRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQS 105 (193)
Q Consensus 33 ~~l~l~D~~g~~~-------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 105 (193)
-.+.+||++|-.+ ++.+...++...|.++.+.+..|+.---+ .+++.++..... ..+++++.|.+|....
T Consensus 87 ~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~~--~~~~i~~VtQ~D~a~p 163 (296)
T COG3596 87 ENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTD-EDFLRDVIILGL--DKRVLFVVTQADRAEP 163 (296)
T ss_pred cceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCC-HHHHHHHHHhcc--CceeEEEEehhhhhcc
Confidence 3478999999654 66667788889999999999988642222 344555555432 2688899999997542
Q ss_pred C-----CCCccCH-------HHHHHHHHhC-CC-cEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 106 G-----VPREVSE-------AEAKAFASQN-DI-LHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 106 ~-----~~~~v~~-------~~~~~~~~~~-~~-~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
. .....+. ..+....+.. .+ +++.++...+-|++++...+++.+-
T Consensus 164 ~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 164 GREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred ccccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 1 0111111 1111111111 13 7888888999999999999988654
No 325
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.16 E-value=0.0073 Score=44.58 Aligned_cols=125 Identities=14% Similarity=0.026 Sum_probs=66.9
Q ss_pred EEEEEecCCcEEEEEEeeCCCcccccc--------ch---hhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCC-C
Q psy38 22 ARLVTMRDGARIKLQLWDTAGQERFRS--------IT---KSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEP-H 89 (193)
Q Consensus 22 ~~~~~~~~~~~~~l~l~D~~g~~~~~~--------~~---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~ 89 (193)
.....+ +| ..+.++||||-.+... +. .....+.|++++|.++.. .+-. ....++.+.+..+. .
T Consensus 41 ~~~~~~-~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~ 115 (196)
T cd01852 41 KESAVW-DG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEKV 115 (196)
T ss_pred eeeEEE-CC--eEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChHh
Confidence 333444 55 4688999999654321 11 123467899999999876 2211 12233344433221 1
Q ss_pred CCeEEEEeeCCCCCCCCC-CCcc--CHHHHHHHHHhCCCcEEEec-----CCCCcCHHHHHHHHHHHHHH
Q psy38 90 RPVFALVGCKLDLLQSGV-PREV--SEAEAKAFASQNDILHFETS-----SRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 90 ~~piilv~nK~Dl~~~~~-~~~v--~~~~~~~~~~~~~~~~~~~S-----a~~~~~i~e~f~~i~~~i~~ 151 (193)
-.++++|.|+.|...... ...+ .....+.+....+-.|+..+ +..+.++.++++.+-+.+.+
T Consensus 116 ~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 116 LDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred HhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 246668899988644210 0000 11334444555454444443 44566888888777776655
No 326
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.09 E-value=0.012 Score=48.45 Aligned_cols=113 Identities=17% Similarity=0.202 Sum_probs=69.2
Q ss_pred EEEecCCcEEEEEEeeCCCccc--------ccc--c-------------------hhhhcc-CccEEEEEE-eCC----C
Q psy38 24 LVTMRDGARIKLQLWDTAGQER--------FRS--I-------------------TKSYYR-NSVGALLVY-DIT----S 68 (193)
Q Consensus 24 ~~~~~~~~~~~l~l~D~~g~~~--------~~~--~-------------------~~~~~~-~~d~~i~v~-d~~----~ 68 (193)
.+...++-...+.+.||+|-.. ... + .+..+. .+++.|+|. |.+ .
T Consensus 82 EI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~ 161 (492)
T TIGR02836 82 EININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIP 161 (492)
T ss_pred EEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccc
Confidence 3344366778899999998432 111 0 123344 789998888 653 1
Q ss_pred hhHHhhH-HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCC--CcCHHHHHHHH
Q psy38 69 RASFEHI-PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS--GFQVENAFTAV 145 (193)
Q Consensus 69 ~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~e~f~~i 145 (193)
++.+.+. .+|++++++. +.|+++|.|+.|-.. ..+.+...++..+++++++.+|..+ ...|..++..+
T Consensus 162 Re~y~~aEe~~i~eLk~~----~kPfiivlN~~dp~~-----~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~v 232 (492)
T TIGR02836 162 REDYVEAEERVIEELKEL----NKPFIILLNSTHPYH-----PETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEV 232 (492)
T ss_pred cccchHHHHHHHHHHHhc----CCCEEEEEECcCCCC-----chhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHH
Confidence 2345555 5688888765 478999999999322 1245555567677788877666542 33444444443
No 327
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.06 E-value=0.0048 Score=46.73 Aligned_cols=99 Identities=14% Similarity=0.063 Sum_probs=55.2
Q ss_pred cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe-EEEEeeCCCCCCCCCCC
Q psy38 31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV-FALVGCKLDLLQSGVPR 109 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~ 109 (193)
....+.++||+|.- ..+ ....+.+|++++++|.+....... ..++..+... ..| +++|.||.|+.++....
T Consensus 81 ~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllviDa~~~~~~~~-~~i~~~l~~~----g~p~vi~VvnK~D~~~~~~~~ 152 (225)
T cd01882 81 KKRRLTFIECPNDI--NAM-IDIAKVADLVLLLIDASFGFEMET-FEFLNILQVH----GFPRVMGVLTHLDLFKKNKTL 152 (225)
T ss_pred CCceEEEEeCCchH--HHH-HHHHHhcCEEEEEEecCcCCCHHH-HHHHHHHHHc----CCCeEEEEEeccccCCcHHHH
Confidence 44667899999853 222 234678999999999976432222 2233333322 244 55699999985421000
Q ss_pred ccCHHHHHH-HHHh--CCCcEEEecCCCCcC
Q psy38 110 EVSEAEAKA-FASQ--NDILHFETSSRSGFQ 137 (193)
Q Consensus 110 ~v~~~~~~~-~~~~--~~~~~~~~Sa~~~~~ 137 (193)
.-.....++ +..+ .+.+++.+||++...
T Consensus 153 ~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 153 RKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 001112222 3322 245899999998753
No 328
>KOG3887|consensus
Probab=97.01 E-value=0.01 Score=45.14 Aligned_cols=124 Identities=20% Similarity=0.286 Sum_probs=75.7
Q ss_pred cEEEEEEeeCCCccccccc---hhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcC-CCCCeEEEEeeCCCCCCCC
Q psy38 31 ARIKLQLWDTAGQERFRSI---TKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIE-PHRPVFALVGCKLDLLQSG 106 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~~~---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~ 106 (193)
.-+.+++||.|||-.+-.- ....++++-++|++.|+-+. =.+.+.++..-+....+ .+++.+=++.+|.|-..+.
T Consensus 73 sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 73 SFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred hhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 3467899999999664322 36778999999999998542 23333333333333322 4567777899999965432
Q ss_pred C----CCccCHHHHHHHHHh----CCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38 107 V----PREVSEAEAKAFASQ----NDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG 156 (193)
Q Consensus 107 ~----~~~v~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~ 156 (193)
. ++.+...-..+++.. ..+.|+.+|.- .-.|-|.|..+++.+++..+.-
T Consensus 152 ~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIy-DHSIfEAFSkvVQkLipqLptL 208 (347)
T KOG3887|consen 152 FKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIY-DHSIFEAFSKVVQKLIPQLPTL 208 (347)
T ss_pred hhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeec-chHHHHHHHHHHHHHhhhchhH
Confidence 1 111211112223322 22467777765 4678899999999888765543
No 329
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.90 E-value=0.002 Score=47.19 Aligned_cols=99 Identities=14% Similarity=0.037 Sum_probs=60.7
Q ss_pred EEEEEeeCCCccccccchhhhccCcc-EEEEEEeCCChhHHhhHHHHHHHHHHhcC--CCCCeEEEEeeCCCCCCCCCCC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSV-GALLVYDITSRASFEHIPVWMMEAKRHIE--PHRPVFALVGCKLDLLQSGVPR 109 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~ 109 (193)
..+-|.+.+|.- ..+..+.=.| .-|+|+|++..+. +-.... ... .=++|+||.||.. ..
T Consensus 97 ~Dll~iEs~GNL----~~~~sp~L~d~~~v~VidvteGe~----------~P~K~gP~i~~-aDllVInK~DLa~---~v 158 (202)
T COG0378 97 LDLLFIESVGNL----VCPFSPDLGDHLRVVVIDVTEGED----------IPRKGGPGIFK-ADLLVINKTDLAP---YV 158 (202)
T ss_pred CCEEEEecCcce----ecccCcchhhceEEEEEECCCCCC----------CcccCCCceeE-eeEEEEehHHhHH---Hh
Confidence 456667777721 1122222234 7888999886431 111101 111 2348999999965 23
Q ss_pred ccCHHHHHHHHHhC--CCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 110 EVSEAEAKAFASQN--DILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 110 ~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
....+...+-+++. +.+++++|.++|.|+++++.|+....
T Consensus 159 ~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 159 GADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred CccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 34445555555553 47999999999999999999987654
No 330
>KOG0466|consensus
Probab=96.87 E-value=0.0021 Score=50.40 Aligned_cols=109 Identities=13% Similarity=0.170 Sum_probs=67.5
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCC----hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS----RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP 108 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~ 108 (193)
-++.|.|++|++-.-...-.-..=.|+++++...+. +++-+++.. -+|.+. .-++++.||.||..+. .
T Consensus 125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~L-----khiiilQNKiDli~e~-~ 196 (466)
T KOG0466|consen 125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMKL-----KHIIILQNKIDLIKES-Q 196 (466)
T ss_pred EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhhh-----ceEEEEechhhhhhHH-H
Confidence 367899999998643222222223588888887765 333333321 123322 2467899999996521 1
Q ss_pred CccCHHHHHHHHHh---CCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 109 REVSEAEAKAFASQ---NDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 109 ~~v~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
..-..++...|.+. .+.+++.+||.-+.||+-+.+.|+..|
T Consensus 197 A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 197 ALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred HHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 11233445556554 356999999999999998888877654
No 331
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=96.73 E-value=0.0031 Score=45.12 Aligned_cols=64 Identities=19% Similarity=0.163 Sum_probs=42.4
Q ss_pred EEEEEeeCCCccc----cccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCC
Q psy38 33 IKLQLWDTAGQER----FRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKL 100 (193)
Q Consensus 33 ~~l~l~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 100 (193)
..+.|+||||... ...+...+++.+|++|+|.+++..-+-.+...|.+.... ....+++|.||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~----~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP----DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT----TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC----CCCeEEEEEcCC
Confidence 4578999999643 335577888999999999999885443343344333332 233477899984
No 332
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.63 E-value=0.022 Score=41.31 Aligned_cols=85 Identities=15% Similarity=0.089 Sum_probs=59.4
Q ss_pred cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCc
Q psy38 31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPRE 110 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~ 110 (193)
..+.+.++|+++... ......+..+|.++++...+ ..+...+..+++.+... +.++.+|.|+.|...
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~----~~~~~vV~N~~~~~~------ 157 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF----GIPVGVVINKYDLND------ 157 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc----CCCEEEEEeCCCCCc------
Confidence 457789999997643 23345678899999999876 44666677777666543 245679999998643
Q ss_pred cCHHHHHHHHHhCCCcEE
Q psy38 111 VSEAEAKAFASQNDILHF 128 (193)
Q Consensus 111 v~~~~~~~~~~~~~~~~~ 128 (193)
-...+..++.+..+++++
T Consensus 158 ~~~~~~~~~~~~~~~~vl 175 (179)
T cd03110 158 EIAEEIEDYCEEEGIPIL 175 (179)
T ss_pred chHHHHHHHHHHcCCCeE
Confidence 234566778888888765
No 333
>KOG0467|consensus
Probab=96.62 E-value=0.0049 Score=53.58 Aligned_cols=82 Identities=23% Similarity=0.314 Sum_probs=57.2
Q ss_pred CCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh---hHHhhHHH-HHHHHHHhc
Q psy38 11 ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR---ASFEHIPV-WMMEAKRHI 86 (193)
Q Consensus 11 ~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~-~~~~i~~~~ 86 (193)
+.+.|-|+....--+.. -.+.+.+.++|++|+-+|.+.......-+|+++++.|+... .+..-++. |++
T Consensus 51 edeq~rgitmkss~is~-~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~------ 123 (887)
T KOG0467|consen 51 EDEQTRGITMKSSAISL-LHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE------ 123 (887)
T ss_pred chhhhhceeeecccccc-ccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc------
Confidence 33444455555555554 55678999999999999999888888889999999999763 23322222 322
Q ss_pred CCCCCeEEEEeeCCCC
Q psy38 87 EPHRPVFALVGCKLDL 102 (193)
Q Consensus 87 ~~~~~piilv~nK~Dl 102 (193)
.-.|+ +|+||+|.
T Consensus 124 --~~~~~-lvinkidr 136 (887)
T KOG0467|consen 124 --GLKPI-LVINKIDR 136 (887)
T ss_pred --cCceE-EEEehhhh
Confidence 12455 99999993
No 334
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.60 E-value=0.0051 Score=48.20 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=38.2
Q ss_pred CeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh--CCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 91 PVFALVGCKLDLLQSGVPREVSEAEAKAFASQ--NDILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 91 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
.+-++|.||+|+... .....+...+..+. ...+++.+||++|.|++++..||..+
T Consensus 231 ~ADIVVLNKiDLl~~---~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPY---LNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcc---cHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 344699999999541 11123333333333 34699999999999999999999774
No 335
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=96.53 E-value=0.016 Score=45.94 Aligned_cols=70 Identities=13% Similarity=0.024 Sum_probs=39.7
Q ss_pred EEEEEeeCCCccccccc-------hhhhcc--CccEEEEEEeCCChhHHhhH-HHHHHHHHHhcCC-CCCeEEEEeeCCC
Q psy38 33 IKLQLWDTAGQERFRSI-------TKSYYR--NSVGALLVYDITSRASFEHI-PVWMMEAKRHIEP-HRPVFALVGCKLD 101 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~-------~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~-~~~piilv~nK~D 101 (193)
..+.+|||+|..+.... ...++. ..|++++|..++.. .+... ...++.+....+. --.+.++|.|+.|
T Consensus 86 ~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d 164 (313)
T TIGR00991 86 FTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQ 164 (313)
T ss_pred eEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCc
Confidence 67899999997643221 122221 58999999765432 22222 2234444443321 1235779999999
Q ss_pred CC
Q psy38 102 LL 103 (193)
Q Consensus 102 l~ 103 (193)
..
T Consensus 165 ~~ 166 (313)
T TIGR00991 165 FS 166 (313)
T ss_pred cC
Confidence 65
No 336
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=96.52 E-value=0.028 Score=45.61 Aligned_cols=108 Identities=17% Similarity=0.090 Sum_probs=62.2
Q ss_pred EEEEeeCCCccccccc--hhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc
Q psy38 34 KLQLWDTAGQERFRSI--TKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV 111 (193)
Q Consensus 34 ~l~l~D~~g~~~~~~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v 111 (193)
.+.|.||.|++.|-+. +..+=...|..+++..+++..+--. ...+- |.- --..|+++|.||+|+..+..-+.+
T Consensus 202 lVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLg-i~~---a~~lPviVvvTK~D~~~ddr~~~v 276 (527)
T COG5258 202 LVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLG-IAL---AMELPVIVVVTKIDMVPDDRFQGV 276 (527)
T ss_pred EEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhh-hhh---hhcCCEEEEEEecccCcHHHHHHH
Confidence 4678999999987542 2334446899999999887432211 11111 111 124799999999999653210000
Q ss_pred -------------------CHHHHH--HHHHh--CC-CcEEEecCCCCcCHHHHHHHHHH
Q psy38 112 -------------------SEAEAK--AFASQ--ND-ILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 112 -------------------~~~~~~--~~~~~--~~-~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
...... ..+-+ .+ +|+|.+|+.+|.|++ ++..+..
T Consensus 277 ~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gld-lL~e~f~ 335 (527)
T COG5258 277 VEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLD-LLDEFFL 335 (527)
T ss_pred HHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHH-HHHHHHH
Confidence 001111 11111 22 489999999999995 3444433
No 337
>KOG0464|consensus
Probab=96.48 E-value=0.0012 Score=53.69 Aligned_cols=82 Identities=23% Similarity=0.311 Sum_probs=63.5
Q ss_pred eeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEE
Q psy38 17 GVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALV 96 (193)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv 96 (193)
|+.+...-+.+ +.+-.++.++||+|+..|+-..+..++--|+++.|||.+..-.-+.+..|.+.= ..++|-..+
T Consensus 87 gitiqsaav~f-dwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqad-----k~~ip~~~f 160 (753)
T KOG0464|consen 87 GITIQSAAVNF-DWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD-----KFKIPAHCF 160 (753)
T ss_pred Cceeeeeeeec-ccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhcc-----ccCCchhhh
Confidence 45566666777 777789999999999999888888888889999999998755555566675432 234777899
Q ss_pred eeCCCCCC
Q psy38 97 GCKLDLLQ 104 (193)
Q Consensus 97 ~nK~Dl~~ 104 (193)
.||.|...
T Consensus 161 inkmdk~~ 168 (753)
T KOG0464|consen 161 INKMDKLA 168 (753)
T ss_pred hhhhhhhh
Confidence 99999644
No 338
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.45 E-value=0.017 Score=44.14 Aligned_cols=69 Identities=20% Similarity=0.196 Sum_probs=42.3
Q ss_pred EEEEEEeeCCCccc-------------cccchhhhccC-ccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEe
Q psy38 32 RIKLQLWDTAGQER-------------FRSITKSYYRN-SVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVG 97 (193)
Q Consensus 32 ~~~l~l~D~~g~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 97 (193)
...+.+.|+||-.. ...+...|+++ .+++++|.|+...-.-.+...+...+. +...++++|.
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld----~~~~rti~Vi 199 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD----PQGERTIGVI 199 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH----HcCCcEEEEE
Confidence 36789999999742 11234567774 458888888764222112222222232 3346888999
Q ss_pred eCCCCCC
Q psy38 98 CKLDLLQ 104 (193)
Q Consensus 98 nK~Dl~~ 104 (193)
||.|..+
T Consensus 200 TK~D~~~ 206 (240)
T smart00053 200 TKLDLMD 206 (240)
T ss_pred ECCCCCC
Confidence 9999865
No 339
>KOG0465|consensus
Probab=96.43 E-value=0.043 Score=46.94 Aligned_cols=70 Identities=23% Similarity=0.258 Sum_probs=50.9
Q ss_pred cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCC
Q psy38 31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQS 105 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 105 (193)
++..+.++||+|+-.|.--.+..++--|++|++++....-.-+....|. ++..+ +.|.+.+.||.|.-..
T Consensus 102 ~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~r-Q~~ry----~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 102 RDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWR-QMKRY----NVPRICFINKMDRMGA 171 (721)
T ss_pred ccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHH-HHHhc----CCCeEEEEehhhhcCC
Confidence 4788999999999988777777888889999999886542222233343 34444 3788899999997543
No 340
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.12 E-value=0.019 Score=41.65 Aligned_cols=44 Identities=20% Similarity=0.068 Sum_probs=27.0
Q ss_pred cEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 58 VGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 58 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
|+++++.|+.++.+-.+ ..+.+.+. ....+.|+++|.||+|+..
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~--l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL--QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH--hccCCCCEEEEEehhhcCC
Confidence 78999999987633221 12222221 1123478899999999943
No 341
>PTZ00258 GTP-binding protein; Provisional
Probab=96.00 E-value=0.082 Score=43.38 Aligned_cols=44 Identities=9% Similarity=-0.024 Sum_probs=28.5
Q ss_pred CCeEEEEeeCC--CCCCCCCCCccCHHHHHHHHHhC-CCcEEEecCCCCc
Q psy38 90 RPVFALVGCKL--DLLQSGVPREVSEAEAKAFASQN-DILHFETSSRSGF 136 (193)
Q Consensus 90 ~~piilv~nK~--Dl~~~~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~ 136 (193)
..|+++|+|+. |+... ..-..+...+++... +.+++.+||+-..
T Consensus 220 ~KP~iyv~N~~E~D~~~~---~~~~~~~l~~~~~~~~~~~~v~~sa~~E~ 266 (390)
T PTZ00258 220 AKPMIYLVNMSEKDFIRQ---KNKWLAKIKEWVGEKGGGPIIPYSAEFEE 266 (390)
T ss_pred cCCEEEEEECchhhhccc---chHHHHHHHHHHHhcCCCeEEEeeHHHHH
Confidence 37899999999 75211 111344555666666 4789999986544
No 342
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.92 E-value=0.016 Score=44.58 Aligned_cols=106 Identities=16% Similarity=0.111 Sum_probs=61.1
Q ss_pred EEEEEeeCCC--ccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCc
Q psy38 33 IKLQLWDTAG--QERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPRE 110 (193)
Q Consensus 33 ~~l~l~D~~g--~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~ 110 (193)
+.+.|.+|.| |.+ -....-+|.+++|....-.+..+-+..=+.++- -+ +|.||.|+... .
T Consensus 122 ~D~IiiETVGvGQsE-----~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia--------Di-~vVNKaD~~gA----~ 183 (266)
T PF03308_consen 122 FDVIIIETVGVGQSE-----VDIADMADTVVLVLVPGLGDEIQAIKAGIMEIA--------DI-FVVNKADRPGA----D 183 (266)
T ss_dssp -SEEEEEEESSSTHH-----HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SE-EEEE--SHHHH----H
T ss_pred CCEEEEeCCCCCccH-----HHHHHhcCeEEEEecCCCccHHHHHhhhhhhhc--------cE-EEEeCCChHHH----H
Confidence 3455667654 332 123445799999998876666555544333332 24 89999996441 1
Q ss_pred cCHHH---HHHHHHh----CCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38 111 VSEAE---AKAFASQ----NDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG 156 (193)
Q Consensus 111 v~~~~---~~~~~~~----~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~ 156 (193)
-...+ ...+... +..+++.+||.++.||++++++|.+.--.....+
T Consensus 184 ~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~sg 236 (266)
T PF03308_consen 184 RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKESG 236 (266)
T ss_dssp HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHcc
Confidence 12222 2222221 2358999999999999999999988655554443
No 343
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=95.80 E-value=0.061 Score=41.45 Aligned_cols=70 Identities=16% Similarity=0.094 Sum_probs=39.2
Q ss_pred EEEEEeeCCCcccccc---c-------hhhhcc--CccEEEEEEeCCCh-hHHhhHHHHHHHHHHhcCC-CCCeEEEEee
Q psy38 33 IKLQLWDTAGQERFRS---I-------TKSYYR--NSVGALLVYDITSR-ASFEHIPVWMMEAKRHIEP-HRPVFALVGC 98 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~---~-------~~~~~~--~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~-~~~piilv~n 98 (193)
..+.+|||+|...... . ...+++ ..++++++..++.. .+..+ ...+..|....+. --.++++|.|
T Consensus 79 ~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T 157 (249)
T cd01853 79 FKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLT 157 (249)
T ss_pred eEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEe
Confidence 5689999999754410 1 122333 56888888766542 12221 2334444443221 1145789999
Q ss_pred CCCCC
Q psy38 99 KLDLL 103 (193)
Q Consensus 99 K~Dl~ 103 (193)
|+|..
T Consensus 158 ~~d~~ 162 (249)
T cd01853 158 HAASS 162 (249)
T ss_pred CCccC
Confidence 99974
No 344
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.77 E-value=0.065 Score=42.11 Aligned_cols=109 Identities=14% Similarity=0.046 Sum_probs=63.0
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS 112 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~ 112 (193)
+.+.|.+|.|--... -...+-+|.++++.-..-.+..+-+.. .+.+.. - |+|.||.|.... ...-
T Consensus 144 ~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~---GimEia-----D-i~vINKaD~~~A---~~a~ 208 (323)
T COG1703 144 YDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKA---GIMEIA-----D-IIVINKADRKGA---EKAA 208 (323)
T ss_pred CCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHh---hhhhhh-----h-eeeEeccChhhH---HHHH
Confidence 345566665532111 123345788888876655454444433 333321 2 389999997542 1111
Q ss_pred H--HHHHHHHH----h--CCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38 113 E--AEAKAFAS----Q--NDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG 156 (193)
Q Consensus 113 ~--~~~~~~~~----~--~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~ 156 (193)
. ..+..+.. . +..+++.+||..|+|+++++.++.++.-.....+
T Consensus 209 r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg 260 (323)
T COG1703 209 RELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESG 260 (323)
T ss_pred HHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhcc
Confidence 1 11112221 1 2348999999999999999999998776655554
No 345
>KOG1143|consensus
Probab=95.60 E-value=0.17 Score=41.06 Aligned_cols=103 Identities=18% Similarity=0.153 Sum_probs=64.4
Q ss_pred EEEEEeeCCCccccccchhhhcc--CccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC----
Q psy38 33 IKLQLWDTAGQERFRSITKSYYR--NSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG---- 106 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---- 106 (193)
-.+.|.|.+|+.+|.......+. ..|.+.++.+++..-.+.. +..+.-+... +.|+.++.+|.|+....
T Consensus 249 KlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL----~iPfFvlvtK~Dl~~~~~~~~ 323 (591)
T KOG1143|consen 249 KLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAAL----NIPFFVLVTKMDLVDRQGLKK 323 (591)
T ss_pred ceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHh----CCCeEEEEEeeccccchhHHH
Confidence 46789999999998765433332 2477888888765432221 2233333332 47899999999996531
Q ss_pred -----------------CCCccCHHHHHHHHHh---CC-CcEEEecCCCCcCHHH
Q psy38 107 -----------------VPREVSEAEAKAFASQ---ND-ILHFETSSRSGFQVEN 140 (193)
Q Consensus 107 -----------------~~~~v~~~~~~~~~~~---~~-~~~~~~Sa~~~~~i~e 140 (193)
+.+.-+.+++...+++ -+ .|+|.+|+.+|+|++-
T Consensus 324 tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l 378 (591)
T KOG1143|consen 324 TVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL 378 (591)
T ss_pred HHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH
Confidence 0112234455444444 23 4899999999999853
No 346
>KOG4273|consensus
Probab=95.52 E-value=0.074 Score=40.76 Aligned_cols=96 Identities=13% Similarity=0.254 Sum_probs=64.8
Q ss_pred ccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------------CC----------
Q psy38 54 YRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------------VP---------- 108 (193)
Q Consensus 54 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------------~~---------- 108 (193)
.+...+++++||++....+..+..|+..-.-+. - -..+.+|||.|...-. +.
T Consensus 76 a~pl~a~vmvfdlse~s~l~alqdwl~htdins--f-dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~df 152 (418)
T KOG4273|consen 76 AEPLQAFVMVFDLSEKSGLDALQDWLPHTDINS--F-DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDF 152 (418)
T ss_pred ccceeeEEEEEeccchhhhHHHHhhcccccccc--c-hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhc
Confidence 344678999999999999999999987433221 1 1344689999853210 00
Q ss_pred ----------------CccCHHHHHHHHHhCCCcEEEecCC------------CCcCHHHHHHHHHHHHHHH
Q psy38 109 ----------------REVSEAEAKAFASQNDILHFETSSR------------SGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 109 ----------------~~v~~~~~~~~~~~~~~~~~~~Sa~------------~~~~i~e~f~~i~~~i~~~ 152 (193)
.......+.+++.++++.+++.++. +..||+.+|.++...+-..
T Consensus 153 gisetegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpg 224 (418)
T KOG4273|consen 153 GISETEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPG 224 (418)
T ss_pred cccccccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCcc
Confidence 0012345678899999999999884 2348999999888765443
No 347
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=94.74 E-value=0.085 Score=42.98 Aligned_cols=109 Identities=17% Similarity=0.211 Sum_probs=50.3
Q ss_pred EEEEeeCCCccccccchhhh-----ccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC--CCC-
Q psy38 34 KLQLWDTAGQERFRSITKSY-----YRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL--LQS- 105 (193)
Q Consensus 34 ~l~l~D~~g~~~~~~~~~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl--~~~- 105 (193)
.+.+||.||...-.-....| +...|.+|++.+- .|.....|+..-.... +.|+++|-+|.|. .+.
T Consensus 87 nv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~----rf~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~ 159 (376)
T PF05049_consen 87 NVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSE----RFTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNER 159 (376)
T ss_dssp TEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESS----S--HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHH
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCC----CCchhhHHHHHHHHHc---CCcEEEEEecccccHhhhh
Confidence 47899999864322223333 3456888887753 3544444444433332 4689999999995 111
Q ss_pred -CCCCccCH----HHHHHHHHh----CCC---cEEEecCCCCc--CHHHHHHHHHHHH
Q psy38 106 -GVPREVSE----AEAKAFASQ----NDI---LHFETSSRSGF--QVENAFTAVTQEI 149 (193)
Q Consensus 106 -~~~~~v~~----~~~~~~~~~----~~~---~~~~~Sa~~~~--~i~e~f~~i~~~i 149 (193)
..++.... ++.++.+.. .++ ++|.+|+.+-. +.-.+.+.+.+.+
T Consensus 160 ~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dL 217 (376)
T PF05049_consen 160 RRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDL 217 (376)
T ss_dssp CC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS
T ss_pred ccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHh
Confidence 00122222 222222222 343 78999988744 4555666665543
No 348
>KOG0469|consensus
Probab=94.69 E-value=0.055 Score=45.46 Aligned_cols=69 Identities=28% Similarity=0.290 Sum_probs=51.2
Q ss_pred CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38 29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL 102 (193)
Q Consensus 29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 102 (193)
++..+.+.++|.+|+..|.+.....++=.|+++.|.|.-+.--.+.-..+.+.+.++ -.|+ +|.||.|.
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER----IkPv-lv~NK~DR 162 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER----IKPV-LVMNKMDR 162 (842)
T ss_pred CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh----ccce-EEeehhhH
Confidence 345688999999999999998889999999999999987643222222233344443 3687 89999994
No 349
>COG1161 Predicted GTPases [General function prediction only]
Probab=94.57 E-value=0.11 Score=41.55 Aligned_cols=92 Identities=20% Similarity=0.132 Sum_probs=57.4
Q ss_pred CCc-cccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHH
Q psy38 41 AGQ-ERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAF 119 (193)
Q Consensus 41 ~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~ 119 (193)
+|+ .++.......+..+|+++-+.|+-++.+.... .+...... .+.++|+||.||.. ..+..+=...+
T Consensus 18 ~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~-----~l~~~v~~--k~~i~vlNK~DL~~----~~~~~~W~~~~ 86 (322)
T COG1161 18 PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP-----ELERIVKE--KPKLLVLNKADLAP----KEVTKKWKKYF 86 (322)
T ss_pred CCchHHHHHHHHHhcccCCEEEEEEeccccccccCc-----cHHHHHcc--CCcEEEEehhhcCC----HHHHHHHHHHH
Confidence 454 44555667888899999999999987643322 22222222 23369999999965 23333333344
Q ss_pred HHhCCCcEEEecCCCCcCHHHHHH
Q psy38 120 ASQNDILHFETSSRSGFQVENAFT 143 (193)
Q Consensus 120 ~~~~~~~~~~~Sa~~~~~i~e~f~ 143 (193)
....+...+.+++..+.+...+..
T Consensus 87 ~~~~~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 87 KKEEGIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred HhcCCCccEEEEeecccCccchHH
Confidence 444466667777777776666554
No 350
>KOG3929|consensus
Probab=93.81 E-value=0.13 Score=39.62 Aligned_cols=69 Identities=12% Similarity=0.225 Sum_probs=40.1
Q ss_pred eeeeeec----cCCCCCcceeeEEEEEEEecCC-cEEEEEEeeCCCccccccchhhhcc----CccEEEEEEeCCChhH
Q psy38 2 VTLLYLY----IQISDPTVGVDFFARLVTMRDG-ARIKLQLWDTAGQERFRSITKSYYR----NSVGALLVYDITSRAS 71 (193)
Q Consensus 2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~-~~~~l~l~D~~g~~~~~~~~~~~~~----~~d~~i~v~d~~~~~s 71 (193)
+.+|+++ .....||...+|.+-.-.- .+ .+-...+|+.+|......+...-+. ..-.+|++.|+++++.
T Consensus 57 tt~I~~~FdR~e~~~~ptlaLEYtygRR~~-g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~~slIL~LDls~p~~ 134 (363)
T KOG3929|consen 57 TTIILRCFDRDEPPKPPTLALEYTYGRRAK-GHNPKDIANFWELGGGTSLLDLLSVPITGDTLRTFSLILVLDLSKPND 134 (363)
T ss_pred eEeehhhcCcccCCCCCceeeeeehhhhcc-CCCchhHHHHHHhcCCccHHHHhcCcccccchhhhhheeeeecCChHH
Confidence 4577776 3345566655555444333 22 2334589999998765544322111 2345788999998653
No 351
>KOG0447|consensus
Probab=93.65 E-value=1.5 Score=37.70 Aligned_cols=97 Identities=20% Similarity=0.240 Sum_probs=61.3
Q ss_pred EEEEEeeCCCcc-------------ccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeC
Q psy38 33 IKLQLWDTAGQE-------------RFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCK 99 (193)
Q Consensus 33 ~~l~l~D~~g~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 99 (193)
-++.+.|.||.- ...++...|..+.+++|+|+.-.. .+.-+....++...+.+.+..-|+|.||
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS---VDAERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS---VDAERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC---cchhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 466788888742 234556789999999999996443 3333344555666666666777799999
Q ss_pred CCCCCCCCCCccCHHHHHHHHHhC-----CCcEEEecCCCC
Q psy38 100 LDLLQSGVPREVSEAEAKAFASQN-----DILHFETSSRSG 135 (193)
Q Consensus 100 ~Dl~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~Sa~~~ 135 (193)
.||.+ ....+...++++..-. .+.||.+-...|
T Consensus 489 VDlAE---knlA~PdRI~kIleGKLFPMKALGYfaVVTGrG 526 (980)
T KOG0447|consen 489 VDLAE---KNVASPSRIQQIIEGKLFPMKALGYFAVVTGKG 526 (980)
T ss_pred cchhh---hccCCHHHHHHHHhcCccchhhcceeEEEecCC
Confidence 99977 2344555555544331 236776544433
No 352
>KOG1424|consensus
Probab=93.55 E-value=0.15 Score=42.81 Aligned_cols=77 Identities=18% Similarity=0.140 Sum_probs=48.8
Q ss_pred ccchhhhccCccEEEEEEeCCChhHHh--hHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC
Q psy38 47 RSITKSYYRNSVGALLVYDITSRASFE--HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND 124 (193)
Q Consensus 47 ~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~ 124 (193)
+.+|+ .++.+|++|.+.|+-++--|. ++..|+.++... .-.+|+.||+||.. .-....-.++....+
T Consensus 166 RQLWR-VlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~-----K~~~LLvNKaDLl~-----~~qr~aWa~YF~~~n 234 (562)
T KOG1424|consen 166 RQLWR-VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPS-----KANVLLVNKADLLP-----PEQRVAWAEYFRQNN 234 (562)
T ss_pred HHHHH-HHhhcceEEEEeecCCccccCChhHHHHHhccccc-----cceEEEEehhhcCC-----HHHHHHHHHHHHhcC
Confidence 34443 366799999999999874433 344455444432 34568999999943 111222234455577
Q ss_pred CcEEEecCCC
Q psy38 125 ILHFETSSRS 134 (193)
Q Consensus 125 ~~~~~~Sa~~ 134 (193)
++++.-||..
T Consensus 235 i~~vf~SA~~ 244 (562)
T KOG1424|consen 235 IPVVFFSALA 244 (562)
T ss_pred ceEEEEeccc
Confidence 9999989886
No 353
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.46 E-value=1 Score=34.41 Aligned_cols=63 Identities=21% Similarity=0.155 Sum_probs=42.5
Q ss_pred EEEEEeeC-CCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38 33 IKLQLWDT-AGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL 102 (193)
Q Consensus 33 ~~l~l~D~-~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 102 (193)
..+.+.|| +|.+.|. +...+++|.+|.|.|.+- .|+....+. .++.+... -.++.+|.||.|-
T Consensus 134 ~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri-~~L~~elg--~k~i~~V~NKv~e 197 (255)
T COG3640 134 YEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERI-KELAEELG--IKRIFVVLNKVDE 197 (255)
T ss_pred CcEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHH-HHHHHHhC--CceEEEEEeeccc
Confidence 45678887 6777754 566889999999999874 355544442 22332222 3678899999984
No 354
>KOG1954|consensus
Probab=93.41 E-value=0.13 Score=41.78 Aligned_cols=67 Identities=15% Similarity=0.128 Sum_probs=41.6
Q ss_pred EEEEeeCCCccccc-----------cchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38 34 KLQLWDTAGQERFR-----------SITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL 102 (193)
Q Consensus 34 ~l~l~D~~g~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 102 (193)
.+.+.||+|.-+-. ....=|...+|.+|++||....+--++....+..++.+ .-.+-+|.||+|.
T Consensus 148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----EdkiRVVLNKADq 223 (532)
T KOG1954|consen 148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----EDKIRVVLNKADQ 223 (532)
T ss_pred heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----cceeEEEeccccc
Confidence 56789999953322 22344677899999999986543222333334444432 2334479999998
Q ss_pred CC
Q psy38 103 LQ 104 (193)
Q Consensus 103 ~~ 104 (193)
.+
T Consensus 224 Vd 225 (532)
T KOG1954|consen 224 VD 225 (532)
T ss_pred cC
Confidence 55
No 355
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=93.38 E-value=1.6 Score=35.60 Aligned_cols=41 Identities=5% Similarity=-0.101 Sum_probs=26.9
Q ss_pred CeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCC
Q psy38 91 PVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133 (193)
Q Consensus 91 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 133 (193)
.|+++|+|+.|..-. ...-..+...+++...+.+++.+||.
T Consensus 200 KP~i~v~N~~e~~~~--~~~~~~~~i~~~~~~~~~~~i~~sa~ 240 (364)
T PRK09601 200 KPVLYVANVDEDDLA--DGNPYVKKVREIAAKEGAEVVVICAK 240 (364)
T ss_pred CCeEEEEECCccccc--cccHHHHHHHHHHHHcCCeEEEEEHH
Confidence 799999999884210 11112345556666678888999975
No 356
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=93.35 E-value=1.3 Score=33.07 Aligned_cols=128 Identities=12% Similarity=0.019 Sum_probs=62.6
Q ss_pred EEEEEEEecCCcEEEEEEeeCCCcccccc----c---h----hhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCC
Q psy38 20 FFARLVTMRDGARIKLQLWDTAGQERFRS----I---T----KSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEP 88 (193)
Q Consensus 20 ~~~~~~~~~~~~~~~l~l~D~~g~~~~~~----~---~----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 88 (193)
.......+ +| ..+.++||||-.+... . . .....+.++++||+.++. -+-.+ ...++.+....+.
T Consensus 39 ~~~~~~~~-~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r-~t~~~-~~~l~~l~~~FG~ 113 (212)
T PF04548_consen 39 CQKYSGEV-DG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGR-FTEED-REVLELLQEIFGE 113 (212)
T ss_dssp -EEEEEEE-TT--EEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCG
T ss_pred cceeeeee-cc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCc-chHHH-HHHHHHHHHHccH
Confidence 33344455 77 5578999999432111 1 1 123457899999999883 22111 2223333333321
Q ss_pred C-CCeEEEEeeCCCCCCCCC-CCccC---HHHHHHHHHhCCCcEEEecCC------CCcCHHHHHHHHHHHHHHH
Q psy38 89 H-RPVFALVGCKLDLLQSGV-PREVS---EAEAKAFASQNDILHFETSSR------SGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 89 ~-~~piilv~nK~Dl~~~~~-~~~v~---~~~~~~~~~~~~~~~~~~Sa~------~~~~i~e~f~~i~~~i~~~ 152 (193)
. -.-++||.|..|...... ...+. .....++.+..+-.|+..+.. ....+.+++..+-+.+.++
T Consensus 114 ~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 114 EIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp GGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 1 123557777777544210 00111 122445666677777776666 2345666666666555554
No 357
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.33 E-value=0.39 Score=37.53 Aligned_cols=101 Identities=18% Similarity=0.110 Sum_probs=59.5
Q ss_pred EEEEEEeeCCCccccccch----hh---hc-----cCccEEEEEEeCCCh-hHHhhHHHHHHHHHHhcCCCCCeEEEEee
Q psy38 32 RIKLQLWDTAGQERFRSIT----KS---YY-----RNSVGALLVYDITSR-ASFEHIPVWMMEAKRHIEPHRPVFALVGC 98 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~----~~---~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~n 98 (193)
.+.+.+.||+|........ .. .. ...|..++|.|++.. +.+..+ ..+.+.. + +--+|.|
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~---~-~~g~IlT 225 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV---G-LTGIILT 225 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC---C-CCEEEEE
Confidence 3678899999975432221 11 11 137899999999753 233322 2333222 1 2337899
Q ss_pred CCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 99 KLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 99 K~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
|.|... ..-.+.......++|+..++ +|++++++-..-.+.+
T Consensus 226 KlDe~~-------~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~~~~~~ 267 (272)
T TIGR00064 226 KLDGTA-------KGGIILSIAYELKLPIKFIG--VGEKIDDLAPFDADWF 267 (272)
T ss_pred ccCCCC-------CccHHHHHHHHHCcCEEEEe--CCCChHhCccCCHHHH
Confidence 999643 33345556666788888877 6677877654444433
No 358
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=93.31 E-value=1.4 Score=31.88 Aligned_cols=90 Identities=11% Similarity=0.063 Sum_probs=63.1
Q ss_pred CccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCC
Q psy38 56 NSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSG 135 (193)
Q Consensus 56 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 135 (193)
..|.++|++|.....|+..+..=+..+....-. +.-+ ++.+-....+ .-.+..++..+++..+.++++.+.-.+.
T Consensus 64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~ffl-GKVC-fl~t~a~~~~---~~sv~~~~V~kla~~y~~plL~~~le~~ 138 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFFL-GKVC-FLATNAGRES---HCSVHPNEVRKLAATYNSPLLFADLENE 138 (176)
T ss_pred eeEEEEEEEecCCcccHHHHHHHHhhCChhhhc-cceE-EEEcCCCccc---ccccCHHHHHHHHHHhCCCEEEeecccc
Confidence 469999999999999999887766666544322 3444 5555555444 3568899999999999999998776665
Q ss_pred cCHHHHHHHHHHHHHHHhc
Q psy38 136 FQVENAFTAVTQEIYNRVQ 154 (193)
Q Consensus 136 ~~i~e~f~~i~~~i~~~~~ 154 (193)
.+. ..+.++++...+
T Consensus 139 ~~~----~~lAqRLL~~lq 153 (176)
T PF11111_consen 139 EGR----TSLAQRLLRMLQ 153 (176)
T ss_pred hHH----HHHHHHHHHHHH
Confidence 444 455555555443
No 359
>KOG0459|consensus
Probab=92.87 E-value=0.69 Score=38.04 Aligned_cols=112 Identities=15% Similarity=0.072 Sum_probs=67.2
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh---hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCC
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR---ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP 108 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~ 108 (193)
.-++.+.|.+|+..|......-..++|..+++.++-.. ..|+.=..-.+...........-.|++.||.|-+...+.
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs 235 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 235 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcc
Confidence 35788999999999887666667788999999987321 123322111222222222333456789999997552211
Q ss_pred CccC---HHHHHHHHHhC------CCcEEEecCCCCcCHHHHHH
Q psy38 109 REVS---EAEAKAFASQN------DILHFETSSRSGFQVENAFT 143 (193)
Q Consensus 109 ~~v~---~~~~~~~~~~~------~~~~~~~Sa~~~~~i~e~f~ 143 (193)
..-. .+....|.+.. ...++.+|..+|.++.+.-.
T Consensus 236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 1111 12233344432 24688999999999987653
No 360
>PHA02518 ParA-like protein; Provisional
Probab=91.49 E-value=1.7 Score=32.02 Aligned_cols=68 Identities=12% Similarity=0.051 Sum_probs=41.6
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh--hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR--ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL 102 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 102 (193)
.+.+.|+|++|... ......+..+|.+|++...+.. .....+..++..+... ......+.++.|+.+-
T Consensus 76 ~~d~viiD~p~~~~--~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 76 GYDYVVVDGAPQDS--ELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEV-TDGLPKFAFIISRAIK 145 (211)
T ss_pred cCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhh-CCCCceEEEEEeccCC
Confidence 36789999998743 4566778889999999987632 2333444444444332 2222344467777653
No 361
>KOG0463|consensus
Probab=91.12 E-value=0.99 Score=36.89 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=19.9
Q ss_pred HHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 119 FASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 119 ~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
|..+.-|++|.+|..+|.|+. ++..++..+
T Consensus 327 F~Ser~CPIFQvSNVtG~NL~-LLkmFLNll 356 (641)
T KOG0463|consen 327 FPSERVCPIFQVSNVTGTNLP-LLKMFLNLL 356 (641)
T ss_pred CccccccceEEeccccCCChH-HHHHHHhhc
Confidence 333344789999999999994 444444433
No 362
>KOG0448|consensus
Probab=90.73 E-value=1.5 Score=38.44 Aligned_cols=66 Identities=15% Similarity=0.254 Sum_probs=43.5
Q ss_pred EEEEeeCCCcc---ccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 34 KLQLWDTAGQE---RFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 34 ~l~l~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
.+.+.|.||.. ...+....+..++|++|+|..+.+..+..+ ..++...- ...+-|.++-||.|...
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs----~~KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVS----EEKPNIFILNNKWDASA 275 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhh----ccCCcEEEEechhhhhc
Confidence 46788999864 344455778889999999998876443322 22333222 23466778889999865
No 363
>PRK14974 cell division protein FtsY; Provisional
Probab=90.61 E-value=1.9 Score=34.75 Aligned_cols=103 Identities=15% Similarity=0.011 Sum_probs=59.5
Q ss_pred EEEEEeeCCCcccccc-ch---hhh--ccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC
Q psy38 33 IKLQLWDTAGQERFRS-IT---KSY--YRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG 106 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 106 (193)
+.+.+.||+|...... +. ... .-+.|..++|.|++... +.......+.... ...- ++.||.|...
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~~---~~~g-iIlTKlD~~~-- 293 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEAV---GIDG-VILTKVDADA-- 293 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhcC---CCCE-EEEeeecCCC--
Confidence 4588999999754221 11 111 22578889999987543 2222122222211 2344 7899999743
Q ss_pred CCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 107 VPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 107 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
..-.+...+...+.|+..++ +|++++++...=.+.+.+
T Consensus 294 -----~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~~~~~~v~ 331 (336)
T PRK14974 294 -----KGGAALSIAYVIGKPILFLG--VGQGYDDLIPFDPDWFVD 331 (336)
T ss_pred -----CccHHHHHHHHHCcCEEEEe--CCCChhhcccCCHHHHHH
Confidence 22334455666788888877 688888876544444433
No 364
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=90.55 E-value=1.8 Score=33.69 Aligned_cols=79 Identities=15% Similarity=0.114 Sum_probs=53.2
Q ss_pred EEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCH
Q psy38 34 KLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113 (193)
Q Consensus 34 ~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~ 113 (193)
.+-+.|++-.-. --.-..+.++|.+|+|=..| +..+.++...++-.... .+|..+|.||.++.. +
T Consensus 165 ~~~IIDsaaG~g--CpVi~sl~~aD~ai~VTEPT-p~glhD~kr~~el~~~f----~ip~~iViNr~~~g~-------s- 229 (284)
T COG1149 165 DLLIIDSAAGTG--CPVIASLKGADLAILVTEPT-PFGLHDLKRALELVEHF----GIPTGIVINRYNLGD-------S- 229 (284)
T ss_pred ceeEEecCCCCC--ChHHHhhccCCEEEEEecCC-ccchhHHHHHHHHHHHh----CCceEEEEecCCCCc-------h-
Confidence 455666643211 11245678899999887765 56788887766655554 478889999996532 2
Q ss_pred HHHHHHHHhCCCcEE
Q psy38 114 AEAKAFASQNDILHF 128 (193)
Q Consensus 114 ~~~~~~~~~~~~~~~ 128 (193)
+..+++.+.+++++
T Consensus 230 -~ie~~~~e~gi~il 243 (284)
T COG1149 230 -EIEEYCEEEGIPIL 243 (284)
T ss_pred -HHHHHHHHcCCCee
Confidence 66778888877655
No 365
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=90.32 E-value=4.5 Score=31.78 Aligned_cols=106 Identities=20% Similarity=0.239 Sum_probs=50.7
Q ss_pred CcceeeEEEEEEEecCCcEEEEEEeeCCCcccc-------ccch-------hhhc-------------cCccEEEEEEeC
Q psy38 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERF-------RSIT-------KSYY-------------RNSVGALLVYDI 66 (193)
Q Consensus 14 pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~-------~~~~-------~~~~-------------~~~d~~i~v~d~ 66 (193)
++..+......+.- ++..+.+.++||+|-... ..+. ..++ ..+|+++++.+.
T Consensus 45 ~~~~i~~~~~~l~e-~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~p 123 (281)
T PF00735_consen 45 RTLEIEERTVELEE-NGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPP 123 (281)
T ss_dssp SCEEEEEEEEEEEE-TCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-T
T ss_pred cccceeeEEEEecc-CCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcC
Confidence 34444444445554 778899999999983210 0000 0011 137999999998
Q ss_pred CChhHHhhH-HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc--CHHHHHHHHHhCCCcEEE
Q psy38 67 TSRASFEHI-PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV--SEAEAKAFASQNDILHFE 129 (193)
Q Consensus 67 ~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v--~~~~~~~~~~~~~~~~~~ 129 (193)
+.. .+..+ ...+..+.. ..++|.|+.|+|.... .++ ......+-....++.+|.
T Consensus 124 t~~-~L~~~Di~~mk~Ls~-----~vNvIPvIaKaD~lt~---~el~~~k~~i~~~l~~~~I~~f~ 180 (281)
T PF00735_consen 124 TGH-GLKPLDIEFMKRLSK-----RVNVIPVIAKADTLTP---EELQAFKQRIREDLEENNIKIFD 180 (281)
T ss_dssp TSS-SS-HHHHHHHHHHTT-----TSEEEEEESTGGGS-H---HHHHHHHHHHHHHHHHTT--S--
T ss_pred CCc-cchHHHHHHHHHhcc-----cccEEeEEecccccCH---HHHHHHHHHHHHHHHHcCceeec
Confidence 652 11111 122233332 3688899999997431 111 122233334456776664
No 366
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=90.30 E-value=1.3 Score=35.44 Aligned_cols=102 Identities=19% Similarity=0.130 Sum_probs=58.6
Q ss_pred EEEEEEeeCCCccccccc----hhhh--------ccCccEEEEEEeCCCh-hHHhhHHHHHHHHHHhcCCCCCeEEEEee
Q psy38 32 RIKLQLWDTAGQERFRSI----TKSY--------YRNSVGALLVYDITSR-ASFEHIPVWMMEAKRHIEPHRPVFALVGC 98 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~n 98 (193)
.+.+.+.||+|....... ...+ -...+..++|.|++.. +.+..+.. ..... .+--+|.|
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~----f~~~~----~~~giIlT 267 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKA----FHEAV----GLTGIILT 267 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHH----HHhhC----CCCEEEEE
Confidence 367899999997542221 1111 1246778899998853 23333222 22211 22348899
Q ss_pred CCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 99 KLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 99 K~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
|.|... ..-.+...+...++|+..++ +|++++++-..-.+.+.
T Consensus 268 KlD~t~-------~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~~~~~~~~ 310 (318)
T PRK10416 268 KLDGTA-------KGGVVFAIADELGIPIKFIG--VGEGIDDLQPFDAEEFV 310 (318)
T ss_pred CCCCCC-------CccHHHHHHHHHCCCEEEEe--CCCChhhCccCCHHHHH
Confidence 999432 23344566677789988888 66778776544333333
No 367
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=90.16 E-value=0.71 Score=35.94 Aligned_cols=95 Identities=19% Similarity=0.153 Sum_probs=51.1
Q ss_pred CccEEEEEEeCCCh-----h--HHhh----HHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCC--CCccCHHHHHHHHHh
Q psy38 56 NSVGALLVYDITSR-----A--SFEH----IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGV--PREVSEAEAKAFASQ 122 (193)
Q Consensus 56 ~~d~~i~v~d~~~~-----~--s~~~----~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--~~~v~~~~~~~~~~~ 122 (193)
..+|+|+++|+.+- + .+.. ++.-+.++.... .-..||.+|.||+|+..-.. -...+.+ ...+-
T Consensus 25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~l-g~~~PVYvv~Tk~D~l~GF~ef~~~L~~~---~r~q~ 100 (266)
T PF14331_consen 25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTL-GVRLPVYVVFTKCDLLPGFDEFFSDLSEE---EREQV 100 (266)
T ss_pred CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHh-CCCCCeEeeeECCCcccCHHHHHHhCCHH---HHhCC
Confidence 46999999998641 1 1222 233444444443 33689999999999854210 0111111 12233
Q ss_pred CCCcEEEecCCCCcC---HHHHHHHHHHHHHHHhc
Q psy38 123 NDILHFETSSRSGFQ---VENAFTAVTQEIYNRVQ 154 (193)
Q Consensus 123 ~~~~~~~~Sa~~~~~---i~e~f~~i~~~i~~~~~ 154 (193)
+|+.+=.-....+.. +++.|+.+...+.....
T Consensus 101 lG~t~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 135 (266)
T PF14331_consen 101 LGFTFPYDEDADGDAWAWFDEEFDELVARLNARVL 135 (266)
T ss_pred cccccCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 454322222333334 77778877777766543
No 368
>KOG2484|consensus
Probab=90.15 E-value=0.56 Score=38.36 Aligned_cols=54 Identities=19% Similarity=0.137 Sum_probs=35.8
Q ss_pred ccccchhhhccCccEEEEEEeCCChhHHh--hHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38 45 RFRSITKSYYRNSVGALLVYDITSRASFE--HIPVWMMEAKRHIEPHRPVFALVGCKLDLL 103 (193)
Q Consensus 45 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 103 (193)
.|..-....++.+|++|.|.|+-||.+-. ++..|+.+- .++...|+|.||+||.
T Consensus 135 aY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~-----~gnKkLILVLNK~DLV 190 (435)
T KOG2484|consen 135 AYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQA-----HGNKKLILVLNKIDLV 190 (435)
T ss_pred HHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhc-----cCCceEEEEeehhccC
Confidence 34444556677899999999999986433 234443211 2335677999999993
No 369
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=90.04 E-value=5.7 Score=28.72 Aligned_cols=85 Identities=11% Similarity=0.096 Sum_probs=57.6
Q ss_pred ccCccEEEEEEeCCC-------hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCc
Q psy38 54 YRNSVGALLVYDITS-------RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126 (193)
Q Consensus 54 ~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~ 126 (193)
++...+=.+++|.+| .+-..++..|+.++...... ..++||.|-+-.. .......+..+.+..+++
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~--~~v~IvSNsaGs~-----~d~~~~~a~~~~~~lgIp 108 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGK--DRVLIVSNSAGSS-----DDPDGERAEALEKALGIP 108 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCC--CeEEEEECCCCcc-----cCccHHHHHHHHHhhCCc
Confidence 445555566777765 12344678899999976421 2477899876432 235678888899999999
Q ss_pred EEEecCCCCcCHHHHHHHH
Q psy38 127 HFETSSRSGFQVENAFTAV 145 (193)
Q Consensus 127 ~~~~Sa~~~~~i~e~f~~i 145 (193)
++.-+++...+..++...+
T Consensus 109 vl~h~~kKP~~~~~i~~~~ 127 (168)
T PF09419_consen 109 VLRHRAKKPGCFREILKYF 127 (168)
T ss_pred EEEeCCCCCccHHHHHHHH
Confidence 9877787776666655544
No 370
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=89.36 E-value=1.9 Score=29.84 Aligned_cols=65 Identities=9% Similarity=0.088 Sum_probs=44.5
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL 102 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 102 (193)
+.+.++|+++... ......+..+|.++++.+.+ ..++..+...++.+.... ...++.+|.|+.+-
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 5678999987532 33456788999999999875 455666555555555432 23456689999874
No 371
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=89.25 E-value=9.3 Score=31.14 Aligned_cols=110 Identities=18% Similarity=0.211 Sum_probs=62.1
Q ss_pred CCCcceeeEEEEEEEecCCcEEEEEEeeCCCcccc---ccch-----------hhh------------cc--CccEEEEE
Q psy38 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERF---RSIT-----------KSY------------YR--NSVGALLV 63 (193)
Q Consensus 12 ~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~---~~~~-----------~~~------------~~--~~d~~i~v 63 (193)
..||+.+.+....+.- +|..+.|.+.||+|--++ ..-| ..| +. .++++++.
T Consensus 62 ~~~~~~i~~~~~~l~e-~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYF 140 (373)
T COG5019 62 TSPTLEIKITKAELEE-DGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYF 140 (373)
T ss_pred CCcceEEEeeeeeeec-CCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEE
Confidence 5678877888777777 888999999999984221 1111 111 11 36899999
Q ss_pred EeCCChhHHhhH-HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEE
Q psy38 64 YDITSRASFEHI-PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129 (193)
Q Consensus 64 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~ 129 (193)
...+.. .+..+ ...+..+... ..+|-|+.|+|...... .....+...+-....++++|.
T Consensus 141 I~Ptgh-~l~~~DIe~Mk~ls~~-----vNlIPVI~KaD~lT~~E-l~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 141 IRPTGH-GLKPLDIEAMKRLSKR-----VNLIPVIAKADTLTDDE-LAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred ecCCCC-CCCHHHHHHHHHHhcc-----cCeeeeeeccccCCHHH-HHHHHHHHHHHHHHhCCceeC
Confidence 987642 22222 1223334333 46778899999744210 011122333344446676663
No 372
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=89.18 E-value=6.2 Score=28.03 Aligned_cols=84 Identities=10% Similarity=-0.107 Sum_probs=51.2
Q ss_pred EEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCH
Q psy38 34 KLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113 (193)
Q Consensus 34 ~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~ 113 (193)
.+.++|+++.... .....+..+|.+|++.+.+. .++..+..+++.+... ....+.+|.|+.+-.. ....
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~-----~~~~ 132 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDM-----VEGG 132 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCcccc-----cchh
Confidence 5889999876432 23455678999999998753 4566666666655542 2245668999988533 1122
Q ss_pred HHHHHHHHhCCCcEE
Q psy38 114 AEAKAFASQNDILHF 128 (193)
Q Consensus 114 ~~~~~~~~~~~~~~~ 128 (193)
+....+.+..+.+++
T Consensus 133 ~~~~~~~~~~~~~v~ 147 (179)
T cd02036 133 DMVEDIEEILGVPLL 147 (179)
T ss_pred hHHHHHHHHhCCCEE
Confidence 223345555566554
No 373
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=89.06 E-value=4.5 Score=32.94 Aligned_cols=70 Identities=16% Similarity=0.129 Sum_probs=53.6
Q ss_pred cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
..+.+.++|.+ .........++.++|-+++|.+.+ -.++....+.+..+++.......|. +|.|+.+...
T Consensus 216 ~~~~~vV~Dlp--~~~~~~t~~vL~~Sd~iviv~e~s-l~slR~ak~lld~l~~~r~~~~~p~-lv~n~~~~~~ 285 (366)
T COG4963 216 GSFDFVVVDLP--NIWTDWTRQVLSGSDEIVIVAEPS-LASLRNAKELLDELKRLRPNDPKPI-LVLNRVGVPK 285 (366)
T ss_pred ccCCeEEEcCC--CccchHHHHHHhcCCeEEEEeccc-HHHHHHHHHHHHHHHHhCCCCCCce-EEeeecCCCC
Confidence 34667889988 334456688999999999999875 4577778888888888765555555 9999998644
No 374
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=88.18 E-value=2.9 Score=36.94 Aligned_cols=74 Identities=14% Similarity=0.092 Sum_probs=42.7
Q ss_pred CCcEEEEEEeeCCCccccc-------cc---hhhhcc--CccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCC-CCeEEE
Q psy38 29 DGARIKLQLWDTAGQERFR-------SI---TKSYYR--NSVGALLVYDITSRASFEHIPVWMMEAKRHIEPH-RPVFAL 95 (193)
Q Consensus 29 ~~~~~~l~l~D~~g~~~~~-------~~---~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piil 95 (193)
+| ..+.|+||+|..... .. ...++. ..|++++|.+++......+-..++..|....+.. -.-+||
T Consensus 164 dG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIV 241 (763)
T TIGR00993 164 QG--VKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIV 241 (763)
T ss_pred CC--ceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEE
Confidence 55 568999999975431 11 122333 5899999998764322212234555555544421 134568
Q ss_pred EeeCCCCCC
Q psy38 96 VGCKLDLLQ 104 (193)
Q Consensus 96 v~nK~Dl~~ 104 (193)
|.|..|...
T Consensus 242 VFThgD~lp 250 (763)
T TIGR00993 242 TLTHAASAP 250 (763)
T ss_pred EEeCCccCC
Confidence 889988753
No 375
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=87.69 E-value=3.7 Score=26.95 Aligned_cols=63 Identities=10% Similarity=-0.056 Sum_probs=42.2
Q ss_pred EEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeC
Q psy38 34 KLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCK 99 (193)
Q Consensus 34 ~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 99 (193)
.+.+.|+++.... .....+..+|.++++.+.+ ..++..+..+++.+.+........+.+|+|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 6789999876432 2345678899999998764 5677777777777766543312345577764
No 376
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=87.31 E-value=5.3 Score=34.39 Aligned_cols=71 Identities=10% Similarity=0.024 Sum_probs=51.1
Q ss_pred HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEec--CCCCcCHHHHHHHHHHH
Q psy38 71 SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS--SRSGFQVENAFTAVTQE 148 (193)
Q Consensus 71 s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~S--a~~~~~i~e~f~~i~~~ 148 (193)
.+.++.+.++.+..+ ..|+++++||.|... +-..+..+++|.+.++++..+. ++-|.|-.++-+.+++.
T Consensus 357 Gl~NL~RHIenvr~F----GvPvVVAINKFd~DT-----e~Ei~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA 427 (557)
T PRK13505 357 GFANLERHIENIRKF----GVPVVVAINKFVTDT-----DAEIAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVEL 427 (557)
T ss_pred HHHHHHHHHHHHHHc----CCCEEEEEeCCCCCC-----HHHHHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHH
Confidence 456677777767654 478889999999854 1245667789999999877443 55677888887777776
Q ss_pred HH
Q psy38 149 IY 150 (193)
Q Consensus 149 i~ 150 (193)
+.
T Consensus 428 ~~ 429 (557)
T PRK13505 428 IE 429 (557)
T ss_pred Hh
Confidence 54
No 377
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=86.82 E-value=1.3 Score=41.77 Aligned_cols=69 Identities=23% Similarity=0.189 Sum_probs=45.4
Q ss_pred EEEeeCCCcc--------ccccchhhhcc---------CccEEEEEEeCCCh-----hH----HhhHHHHHHHHHHhcCC
Q psy38 35 LQLWDTAGQE--------RFRSITKSYYR---------NSVGALLVYDITSR-----AS----FEHIPVWMMEAKRHIEP 88 (193)
Q Consensus 35 l~l~D~~g~~--------~~~~~~~~~~~---------~~d~~i~v~d~~~~-----~s----~~~~~~~~~~i~~~~~~ 88 (193)
-.++||+|.- .....|..++. ..+++|+++|+.+- +. -..++..+.++....+
T Consensus 163 avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg- 241 (1169)
T TIGR03348 163 AVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG- 241 (1169)
T ss_pred EEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 4588999831 12233444433 58999999999752 11 1244666777776654
Q ss_pred CCCeEEEEeeCCCCCC
Q psy38 89 HRPVFALVGCKLDLLQ 104 (193)
Q Consensus 89 ~~~piilv~nK~Dl~~ 104 (193)
-..||.+|.||+|+..
T Consensus 242 ~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 242 ARFPVYLVLTKADLLA 257 (1169)
T ss_pred CCCCEEEEEecchhhc
Confidence 3689999999999853
No 378
>KOG2423|consensus
Probab=83.73 E-value=5.5 Score=33.01 Aligned_cols=95 Identities=16% Similarity=0.144 Sum_probs=51.5
Q ss_pred chhhhc---cCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC
Q psy38 49 ITKSYY---RNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI 125 (193)
Q Consensus 49 ~~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~ 125 (193)
.|...| ..+|++|-|.|+-||.. .--..++.......+ ..-+|+|.||+||.- -.++..=...+.+.+--
T Consensus 203 IW~ELyKViDSSDVvvqVlDARDPmG--Trc~~ve~ylkke~p-hKHli~vLNKvDLVP----twvt~~Wv~~lSkeyPT 275 (572)
T KOG2423|consen 203 IWGELYKVIDSSDVVVQVLDARDPMG--TRCKHVEEYLKKEKP-HKHLIYVLNKVDLVP----TWVTAKWVRHLSKEYPT 275 (572)
T ss_pred HHHHHHHhhcccceeEEeeeccCCcc--cccHHHHHHHhhcCC-cceeEEEeecccccc----HHHHHHHHHHHhhhCcc
Confidence 454444 47899999999988642 111223333333323 344569999999954 33444444455555443
Q ss_pred cEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 126 LHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 126 ~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
--|..|..+..|=..+. .++++.-+
T Consensus 276 iAfHAsi~nsfGKgalI-~llRQf~k 300 (572)
T KOG2423|consen 276 IAFHASINNSFGKGALI-QLLRQFAK 300 (572)
T ss_pred eeeehhhcCccchhHHH-HHHHHHHh
Confidence 44555655555543332 33344433
No 379
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=81.61 E-value=9.8 Score=31.98 Aligned_cols=85 Identities=16% Similarity=0.028 Sum_probs=48.6
Q ss_pred EEEEeeCCCccccccch----h--hhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCC
Q psy38 34 KLQLWDTAGQERFRSIT----K--SYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGV 107 (193)
Q Consensus 34 ~l~l~D~~g~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 107 (193)
.+.+.||+|........ . ..+..+|.+++|.|++... +.......+.... .. --+|.||.|-..
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i-~gvIlTKlD~~a--- 246 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GI-GGIIITKLDGTA--- 246 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CC-CEEEEecccCCC---
Confidence 68899999976533211 1 1133578899999987642 2222222222221 12 236789999643
Q ss_pred CCccCHHHHHHHHHhCCCcEEEecC
Q psy38 108 PREVSEAEAKAFASQNDILHFETSS 132 (193)
Q Consensus 108 ~~~v~~~~~~~~~~~~~~~~~~~Sa 132 (193)
..-.+...+...+.|+..++.
T Consensus 247 ----~~G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 247 ----KGGGALSAVAETGAPIKFIGT 267 (437)
T ss_pred ----cccHHHHHHHHHCcCEEEEec
Confidence 234455666667777666554
No 380
>KOG2486|consensus
Probab=81.46 E-value=0.82 Score=35.77 Aligned_cols=109 Identities=14% Similarity=0.028 Sum_probs=57.5
Q ss_pred EEEEeeCCCc----------cccccchhhhccCcc---EEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCC
Q psy38 34 KLQLWDTAGQ----------ERFRSITKSYYRNSV---GALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKL 100 (193)
Q Consensus 34 ~l~l~D~~g~----------~~~~~~~~~~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 100 (193)
.+.+.|.+|- +.+..+...|+.+-+ -++++.|++-+ ++.... .+.+.....+.|+.+|.||+
T Consensus 184 ~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~--i~~~D~---~~i~~~ge~~VP~t~vfTK~ 258 (320)
T KOG2486|consen 184 SWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVP--IQPTDN---PEIAWLGENNVPMTSVFTKC 258 (320)
T ss_pred eEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCC--CCCCCh---HHHHHHhhcCCCeEEeeehh
Confidence 4667888881 223333344444322 24445555432 222222 12222334568999999999
Q ss_pred CCCCCCC---CCccCH-----HHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38 101 DLLQSGV---PREVSE-----AEAKAFASQNDILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 101 Dl~~~~~---~~~v~~-----~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
|...+.. .+.... ......+.....+++.+|+.++.|++++.--|..
T Consensus 259 DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 259 DKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred hhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence 9754321 111111 1111122223457888999999999988766654
No 381
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=80.89 E-value=21 Score=27.45 Aligned_cols=68 Identities=10% Similarity=0.012 Sum_probs=40.2
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeE-EEEeeCCC
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVF-ALVGCKLD 101 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~D 101 (193)
.+.+.|+||+|.-.... ....+.-+|.+|++... +..++..+...+..+.........++ -+|.|+.+
T Consensus 117 ~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~-~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 117 DYDVILFDVLGDVVCGG-FAAPLQYADYALIVTAN-DFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred cCCEEEEecCCCcccCc-ccchhhhCcEEEEEecC-chhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence 46788999976533221 22346678999998865 45556666555554443222233443 37888865
No 382
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=80.68 E-value=11 Score=31.54 Aligned_cols=86 Identities=17% Similarity=0.012 Sum_probs=50.3
Q ss_pred EEEEEeeCCCccccccc-hh---h--hccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC
Q psy38 33 IKLQLWDTAGQERFRSI-TK---S--YYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG 106 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~-~~---~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 106 (193)
+.+.|.||+|....... .. . ..-..+.+++|.|.+.. +++..+...+..... +-- +|.||.|-..
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v~---i~g-iIlTKlD~~~-- 253 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERLG---LTG-VVLTKLDGDA-- 253 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhCC---CCE-EEEeCccCcc--
Confidence 56889999996443221 11 1 12246888999998753 334444444443321 223 6799999532
Q ss_pred CCCccCHHHHHHHHHhCCCcEEEecC
Q psy38 107 VPREVSEAEAKAFASQNDILHFETSS 132 (193)
Q Consensus 107 ~~~~v~~~~~~~~~~~~~~~~~~~Sa 132 (193)
..-.+...+...++|+..++.
T Consensus 254 -----~~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 254 -----RGGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred -----cccHHHHHHHHHCcCEEEEeC
Confidence 223366777777887776554
No 383
>KOG1547|consensus
Probab=80.05 E-value=26 Score=27.21 Aligned_cols=115 Identities=16% Similarity=0.128 Sum_probs=60.9
Q ss_pred CCCcceeeEEEEEEEecCCcEEEEEEeeCCCcccc---ccch-----------hhh------------cc--CccEEEEE
Q psy38 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERF---RSIT-----------KSY------------YR--NSVGALLV 63 (193)
Q Consensus 12 ~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~---~~~~-----------~~~------------~~--~~d~~i~v 63 (193)
+..|+.+...+..+.- +|-...+.+.||+|--+. ..-| ..| +. .++++++.
T Consensus 84 ~pkT~eik~~thvieE-~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyF 162 (336)
T KOG1547|consen 84 IPKTTEIKSITHVIEE-KGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYF 162 (336)
T ss_pred ccceEEEEeeeeeeee-cceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEE
Confidence 4445556666666665 777888999999984211 1111 112 22 36788888
Q ss_pred EeCCChhHHhhH-HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCC
Q psy38 64 YDITSRASFEHI-PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134 (193)
Q Consensus 64 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 134 (193)
...+.- ++.-+ ..+++.+.+. ..++-|+-|+|-..- ..+....+..++-...+++.+|.--+.+
T Consensus 163 i~ptGh-sLrplDieflkrLt~v-----vNvvPVIakaDtlTl-eEr~~FkqrI~~el~~~~i~vYPq~~fd 227 (336)
T KOG1547|consen 163 IPPTGH-SLRPLDIEFLKRLTEV-----VNVVPVIAKADTLTL-EERSAFKQRIRKELEKHGIDVYPQDSFD 227 (336)
T ss_pred eCCCCC-ccCcccHHHHHHHhhh-----heeeeeEeecccccH-HHHHHHHHHHHHHHHhcCcccccccccc
Confidence 877642 23323 2233333332 456678899995220 0122223334444445777766544443
No 384
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=79.57 E-value=3.8 Score=32.12 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=23.4
Q ss_pred EEEEeeCCCccccc----cchhh---hccCccEEEEEEeCC
Q psy38 34 KLQLWDTAGQERFR----SITKS---YYRNSVGALLVYDIT 67 (193)
Q Consensus 34 ~l~l~D~~g~~~~~----~~~~~---~~~~~d~~i~v~d~~ 67 (193)
.++++|++|..+-. .+... .++++|++++|+|+.
T Consensus 63 ~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 63 TIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred EEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 58999999954311 12222 356799999999874
No 385
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=79.52 E-value=22 Score=26.79 Aligned_cols=66 Identities=14% Similarity=0.026 Sum_probs=41.7
Q ss_pred EEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38 34 KLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL 103 (193)
Q Consensus 34 ~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 103 (193)
.+.++|+++.. .......+..+|.+|++...+ ..++..+...+..+.... ....++-+|.|+.|..
T Consensus 116 D~viiD~pp~~--~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~~-~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 116 DWVLIDVPRGP--SPITRQALAAADLVLVVVNAD-AACYATLHQQALALFAGS-GPRIGPHFLINQFDPA 181 (246)
T ss_pred CEEEEECCCCc--hHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhcc-cccccceEEeeccCcc
Confidence 58899999853 234566778899999999875 445555553333333321 1223456889998853
No 386
>KOG1486|consensus
Probab=78.03 E-value=31 Score=26.99 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=28.8
Q ss_pred EEecCCcEEEEEEeeCCCcccccc-------chhhhccCccEEEEEEeCCChh
Q psy38 25 VTMRDGARIKLQLWDTAGQERFRS-------ITKSYYRNSVGALLVYDITSRA 70 (193)
Q Consensus 25 ~~~~~~~~~~l~l~D~~g~~~~~~-------~~~~~~~~~d~~i~v~d~~~~~ 70 (193)
+.+ +| ..+++.|.||.-+-.+ ......+.+|.+++|.|++..+
T Consensus 104 i~y-~g--a~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e 153 (364)
T KOG1486|consen 104 IHY-NG--ANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSE 153 (364)
T ss_pred EEe-cC--ceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcch
Confidence 344 55 4578999988543222 2234566899999999998754
No 387
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=77.59 E-value=7.2 Score=27.64 Aligned_cols=63 Identities=11% Similarity=0.027 Sum_probs=36.9
Q ss_pred EEEEEeeCCCccccccchhh--------hccCccEEEEEEeCCChhH-HhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38 33 IKLQLWDTAGQERFRSITKS--------YYRNSVGALLVYDITSRAS-FEHIPVWMMEAKRHIEPHRPVFALVGCKLDL 102 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 102 (193)
...-+.|++|-.+-..+... ..-..+.++.+.|+.+... +.....+..++.. .-+ +|.||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~------ad~-ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF------ADR-ILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH------CCE-EEEecccC
Confidence 45678899997542222221 2335789999999865332 2222334444443 234 78999996
No 388
>KOG0410|consensus
Probab=76.85 E-value=2.5 Score=33.97 Aligned_cols=116 Identities=20% Similarity=0.149 Sum_probs=68.8
Q ss_pred EEEEecCCcEEEEEEeeCCCccc---------cccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCC---CC
Q psy38 23 RLVTMRDGARIKLQLWDTAGQER---------FRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEP---HR 90 (193)
Q Consensus 23 ~~~~~~~~~~~~l~l~D~~g~~~---------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~ 90 (193)
+...+++|.. +-+.||-|--. |+... .-+..+|.++.|.|+++|+--......+.-+.+..-+ ..
T Consensus 218 h~a~Lpsg~~--vlltDTvGFisdLP~~LvaAF~ATL-eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl 294 (410)
T KOG0410|consen 218 HSAHLPSGNF--VLLTDTVGFISDLPIQLVAAFQATL-EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKL 294 (410)
T ss_pred hhccCCCCcE--EEEeechhhhhhCcHHHHHHHHHHH-HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHH
Confidence 3455657755 55889988432 22111 2245799999999999986443333333333332211 11
Q ss_pred CeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38 91 PVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154 (193)
Q Consensus 91 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~ 154 (193)
..++=|-||.|.... .++. .+.+ .+-+|+++|.|.+++..++-........
T Consensus 295 ~~mieVdnkiD~e~~----~~e~-------E~n~--~v~isaltgdgl~el~~a~~~kv~~~t~ 345 (410)
T KOG0410|consen 295 QNMIEVDNKIDYEED----EVEE-------EKNL--DVGISALTGDGLEELLKAEETKVASETT 345 (410)
T ss_pred hHHHhhccccccccc----cCcc-------ccCC--ccccccccCccHHHHHHHHHHHhhhhhe
Confidence 234457888887552 1111 1111 4568999999999999988887766543
No 389
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=76.83 E-value=22 Score=27.00 Aligned_cols=67 Identities=13% Similarity=0.041 Sum_probs=43.4
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhc--CCCCCeEEEEeeCCC
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHI--EPHRPVFALVGCKLD 101 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~piilv~nK~D 101 (193)
.+.+.|.|++|... ......+..+|.+|+-+..+ +.++..+..++..+.... .....+..++.|..+
T Consensus 83 ~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps-~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 83 GFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLT-PLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCc-HHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 47889999999764 34456677899999888764 444555544444443321 123456668999876
No 390
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=76.58 E-value=28 Score=25.75 Aligned_cols=89 Identities=9% Similarity=-0.028 Sum_probs=51.8
Q ss_pred EEEEEEeeCCCccccccch-hhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCC-CCCeEEEEeeCCCCCCCCCCC
Q psy38 32 RIKLQLWDTAGQERFRSIT-KSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEP-HRPVFALVGCKLDLLQSGVPR 109 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~ 109 (193)
.+.+.++|++|......+. ....+-+|.+|++...+ ..++..+...+..+...... ......+|.|+.+..
T Consensus 116 ~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~------ 188 (212)
T cd02117 116 DLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD------ 188 (212)
T ss_pred CCCEEEEecCCCceecccccccccccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc------
Confidence 4678889997654322221 11224689999999764 45665555555555544322 223345899998842
Q ss_pred ccCHHHHHHHHHhCCCcEE
Q psy38 110 EVSEAEAKAFASQNDILHF 128 (193)
Q Consensus 110 ~v~~~~~~~~~~~~~~~~~ 128 (193)
...+...++.+.++.+++
T Consensus 189 -~~~~~~~~~~~~~~~~vl 206 (212)
T cd02117 189 -RETELIDAFAERLGTQVI 206 (212)
T ss_pred -cHHHHHHHHHHHcCCCEE
Confidence 234455667777776555
No 391
>KOG2655|consensus
Probab=75.26 E-value=44 Score=27.39 Aligned_cols=128 Identities=15% Similarity=0.224 Sum_probs=70.5
Q ss_pred cceeeEEEEEEEecCCcEEEEEEeeCCCccc-------ccc------------------chhhhcc--CccEEEEEEeCC
Q psy38 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQER-------FRS------------------ITKSYYR--NSVGALLVYDIT 67 (193)
Q Consensus 15 t~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-------~~~------------------~~~~~~~--~~d~~i~v~d~~ 67 (193)
|+.++.....+.- +|..+.|.+.||+|--+ ++. +.+..+. .++++++....+
T Consensus 62 t~~i~~~~~~iee-~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ 140 (366)
T KOG2655|consen 62 TVEIESTKVEIEE-NGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPT 140 (366)
T ss_pred cceeeeeeeeecC-CCeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCC
Confidence 5555666555555 78889999999998421 111 0111222 479999999876
Q ss_pred ChhHHhhH-HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHH
Q psy38 68 SRASFEHI-PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVT 146 (193)
Q Consensus 68 ~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~ 146 (193)
.. .+..+ ......+.. ...+|-|+.|+|..... ........+.+-....++.+|.-..... ++.+....
T Consensus 141 gh-gL~p~Di~~Mk~l~~-----~vNiIPVI~KaD~lT~~-El~~~K~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~ 210 (366)
T KOG2655|consen 141 GH-GLKPLDIEFMKKLSK-----KVNLIPVIAKADTLTKD-ELNQFKKRIRQDIEEHNIKVFDFPTDES---DEELKEEE 210 (366)
T ss_pred CC-CCcHhhHHHHHHHhc-----cccccceeeccccCCHH-HHHHHHHHHHHHHHHcCcceecCCCCcc---hhhhHHHH
Confidence 42 12222 112222222 36677889999974410 0111223344445557777776555543 66666666
Q ss_pred HHHHHHh
Q psy38 147 QEIYNRV 153 (193)
Q Consensus 147 ~~i~~~~ 153 (193)
+.+....
T Consensus 211 ~~l~~~~ 217 (366)
T KOG2655|consen 211 QDLKSSI 217 (366)
T ss_pred HHHhhcC
Confidence 6666543
No 392
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=75.09 E-value=7.6 Score=27.87 Aligned_cols=33 Identities=15% Similarity=0.040 Sum_probs=24.5
Q ss_pred HHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38 115 EAKAFASQNDILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 115 ~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
+..+...+.|++++.+|+.++.+++++...+-.
T Consensus 3 ~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~ 35 (161)
T PF03193_consen 3 ELLEQYEKLGYPVFFISAKTGEGIEELKELLKG 35 (161)
T ss_dssp HHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT
T ss_pred HHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC
Confidence 345666778888889999999999888876643
No 393
>PRK10867 signal recognition particle protein; Provisional
Probab=72.68 E-value=27 Score=29.39 Aligned_cols=86 Identities=15% Similarity=0.019 Sum_probs=48.2
Q ss_pred EEEEEeeCCCcccccc-chh---h--hccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC
Q psy38 33 IKLQLWDTAGQERFRS-ITK---S--YYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG 106 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~-~~~---~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 106 (193)
+.+.|.||+|...... +.. . ..-..+.+++|.|.... +++......+.... ..-- +|.||.|-..
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~---~i~g-iIlTKlD~~~-- 254 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL---GLTG-VILTKLDGDA-- 254 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC---CCCE-EEEeCccCcc--
Confidence 5688999999653221 111 1 11246778999998653 23333333333322 1223 6779999533
Q ss_pred CCCccCHHHHHHHHHhCCCcEEEecC
Q psy38 107 VPREVSEAEAKAFASQNDILHFETSS 132 (193)
Q Consensus 107 ~~~~v~~~~~~~~~~~~~~~~~~~Sa 132 (193)
..-.+...+...++|+..++.
T Consensus 255 -----rgG~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 255 -----RGGAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred -----cccHHHHHHHHHCcCEEEEeC
Confidence 222356667777787776654
No 394
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=71.80 E-value=17 Score=28.00 Aligned_cols=69 Identities=14% Similarity=0.058 Sum_probs=39.3
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe-EEEEeeCCCC
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV-FALVGCKLDL 102 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 102 (193)
.+.+.|.||+|...... ....+..+|.+|++...+ ..++..+...+..+.........+ ..+|.|+.+.
T Consensus 115 ~yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCGG-FAAPLNYADYALIVTDND-FDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCccccc-chhhhhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 36678999977543211 223367789999988764 344555544444443322122343 3368899873
No 395
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=71.23 E-value=34 Score=24.26 Aligned_cols=82 Identities=16% Similarity=0.056 Sum_probs=43.5
Q ss_pred EEEEEeeCCCcccccc-c---hhhh--ccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC
Q psy38 33 IKLQLWDTAGQERFRS-I---TKSY--YRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG 106 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~-~---~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 106 (193)
..+.+.|++|...+.. . ...+ ....+.+++|.+..... +...+...+.+... . .-+|.||.|...
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~~---~-~~viltk~D~~~-- 153 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEALG---I-TGVILTKLDGDA-- 153 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhCC---C-CEEEEECCcCCC--
Confidence 4567899999743211 1 1111 12489999999986533 22234444443322 2 346779999644
Q ss_pred CCCccCHHHHHHHHHhCCCcEE
Q psy38 107 VPREVSEAEAKAFASQNDILHF 128 (193)
Q Consensus 107 ~~~~v~~~~~~~~~~~~~~~~~ 128 (193)
......+.+...++|+.
T Consensus 154 -----~~g~~~~~~~~~~~p~~ 170 (173)
T cd03115 154 -----RGGAALSIRAVTGKPIK 170 (173)
T ss_pred -----CcchhhhhHHHHCcCeE
Confidence 22223345555555543
No 396
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=70.20 E-value=26 Score=25.84 Aligned_cols=88 Identities=19% Similarity=0.073 Sum_probs=49.7
Q ss_pred EEEEEeeCCCccccccc----hhhhcc--CccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC
Q psy38 33 IKLQLWDTAGQERFRSI----TKSYYR--NSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG 106 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 106 (193)
+.+.++||+|...+... ...++. ..+-+++|.+++... +.+. .......... +.- ++.||.|-..
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~-~~~~~~~~~~---~~~-lIlTKlDet~-- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLE-QALAFYEAFG---IDG-LILTKLDETA-- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHH-HHHHHHHHSS---TCE-EEEESTTSSS--
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHH-HHHHHhhccc---Cce-EEEEeecCCC--
Confidence 56889999996543221 111111 467788999987643 2222 2222333221 233 6799999533
Q ss_pred CCCccCHHHHHHHHHhCCCcEEEecCCC
Q psy38 107 VPREVSEAEAKAFASQNDILHFETSSRS 134 (193)
Q Consensus 107 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 134 (193)
..-.+..++...+.|+-.++.-.
T Consensus 155 -----~~G~~l~~~~~~~~Pi~~it~Gq 177 (196)
T PF00448_consen 155 -----RLGALLSLAYESGLPISYITTGQ 177 (196)
T ss_dssp -----TTHHHHHHHHHHTSEEEEEESSS
T ss_pred -----CcccceeHHHHhCCCeEEEECCC
Confidence 44556677777888777666443
No 397
>KOG0781|consensus
Probab=69.96 E-value=32 Score=29.37 Aligned_cols=106 Identities=13% Similarity=0.089 Sum_probs=63.7
Q ss_pred EEEEEeeCCCcccccc-chh-----hhccCccEEEEEEeCC-ChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCC
Q psy38 33 IKLQLWDTAGQERFRS-ITK-----SYYRNSVGALLVYDIT-SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQS 105 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 105 (193)
+.+.+.||+|...-.. +.. .-....|.+++|-.+- .-++.+.+.++-..+.....+..+-- ++.+|.|-.++
T Consensus 467 fDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~-~~ltk~dtv~d 545 (587)
T KOG0781|consen 467 FDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDG-ILLTKFDTVDD 545 (587)
T ss_pred CCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccce-EEEEeccchhh
Confidence 6678999999754322 221 1234679999888653 34678888887777777655555555 78999996542
Q ss_pred CCCCccCHHHHHHHHHhCCCcEEEecC------CCCcCHHHHHHHH
Q psy38 106 GVPREVSEAEAKAFASQNDILHFETSS------RSGFQVENAFTAV 145 (193)
Q Consensus 106 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa------~~~~~i~e~f~~i 145 (193)
..-.+..+...-+.|++.+-. ....+++.+...+
T Consensus 546 ------~vg~~~~m~y~~~~pi~fvg~gqtysdlr~l~v~~vv~~l 585 (587)
T KOG0781|consen 546 ------KVGAAVSMVYITGKPILFVGVGQTYSDLRKLNVKAVVATL 585 (587)
T ss_pred ------HHHHHhhheeecCCceEEEecCcchhhhhhccHHHHHHHh
Confidence 222233444445667666532 2334555555444
No 398
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=69.84 E-value=17 Score=26.09 Aligned_cols=68 Identities=12% Similarity=-0.008 Sum_probs=48.4
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
+.+.+.|+++..... ....+..+|.+|++.+.+. .+...+..+++.+...... ...+-+|.|+.+..+
T Consensus 95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~~~-~~~~~vv~N~v~~~~ 162 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLGKK-LKIIGVVINRVDPGN 162 (195)
T ss_dssp SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHTHT-EEEEEEEEEEETSCC
T ss_pred ccceeecccccccHH--HHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhccc-cceEEEEEeeeCCCc
Confidence 567899998764432 5667778999999999764 5577777777777765322 225568999998643
No 399
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=69.64 E-value=53 Score=25.86 Aligned_cols=118 Identities=11% Similarity=0.078 Sum_probs=64.0
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCC-eEEEEeeCCCCCCCC----
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRP-VFALVGCKLDLLQSG---- 106 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-piilv~nK~Dl~~~~---- 106 (193)
.+.+.++||+|.-....+ ...+..+|.+|++.+.+ ..++..+...++.+......... ..-+|.|+.+.....
T Consensus 115 ~yD~IiIDt~~~l~~~a~-~aal~~AD~viIp~~p~-~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~~~~~~~~~ 192 (290)
T CHL00072 115 EYDIILFDVLGDVVCGGF-AAPLNYADYCIIITDNG-FDALFAANRIAASVREKARTHPLRLAGLVGNRTSKRDLIDKYV 192 (290)
T ss_pred cCCEEEEecCCcceechh-hhhhhcCCEEEEEecCC-HHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCchhHHHHHH
Confidence 366889999765321111 23356789999988764 55666555544444432211222 333788988732100
Q ss_pred ------CCCccCHHHHHHHHHhCCCcEEEecCCCCcC---HHHHHHHHHHHHHHH
Q psy38 107 ------VPREVSEAEAKAFASQNDILHFETSSRSGFQ---VENAFTAVTQEIYNR 152 (193)
Q Consensus 107 ------~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~---i~e~f~~i~~~i~~~ 152 (193)
.-..++.......+...+.++++.... ..+ ....|..+++.++.+
T Consensus 193 ~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p~-s~~~~~~a~~y~~La~ell~~ 246 (290)
T CHL00072 193 EACPMPVLEVLPLIEDIRVSRVKGKTLFEMVES-EPSLNYVCDYYLNIADQLLSQ 246 (290)
T ss_pred HHcCCceEEECCCChHHHHHHhCCCceEEeCCC-CcchhHHHHHHHHHHHHHHhC
Confidence 001233344444455566677765443 222 466788888887664
No 400
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=68.67 E-value=36 Score=26.01 Aligned_cols=102 Identities=9% Similarity=0.034 Sum_probs=60.3
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhH--HhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCc
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS--FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPRE 110 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~ 110 (193)
+.+.|.|+.|... .+....+..+|.+|+=.-.+..+. -.....|+.++.... ...+|.-++.|+..-.. ..
T Consensus 84 ~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~-~~~ip~~Vl~Tr~~~~~----~~ 156 (231)
T PF07015_consen 84 FDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAE-RRDIPAAVLFTRVPAAR----LT 156 (231)
T ss_pred CCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhh-CCCCCeeEEEecCCcch----hh
Confidence 5688999988754 234566778999998887764332 223345666666433 44578889999976321 00
Q ss_pred cCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHH
Q psy38 111 VSEAEAKAFASQNDILHFETSSRSGFQVENAFT 143 (193)
Q Consensus 111 v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~ 143 (193)
.......++.. ++++|.+.-.......++|.
T Consensus 157 ~~~~~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 157 RAQRIISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHHHHHh--cCCccccccccHHHHHHHHH
Confidence 11112223333 48888777666554444444
No 401
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=68.33 E-value=39 Score=23.87 Aligned_cols=91 Identities=10% Similarity=0.076 Sum_probs=54.4
Q ss_pred EEEEEEeeCCCccccccchhhhc--cCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCC--CC
Q psy38 32 RIKLQLWDTAGQERFRSITKSYY--RNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQS--GV 107 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--~~ 107 (193)
.+.+.+.|+++... ......+ ..+|.+|++...+ +.++..+..++..+.+.. ...+-+|.|+.+-... ..
T Consensus 67 ~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~~---~~~~gvv~N~~~~~~~~~~~ 140 (169)
T cd02037 67 ELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKVN---IPILGVVENMSYFVCPHCGK 140 (169)
T ss_pred CCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhcC---CCeEEEEEcCCcccCCCCCC
Confidence 46688999987632 1112222 5789999998765 567777777777777652 2344478999875211 00
Q ss_pred CCcc-CHHHHHHHHHhCCCcEE
Q psy38 108 PREV-SEAEAKAFASQNDILHF 128 (193)
Q Consensus 108 ~~~v-~~~~~~~~~~~~~~~~~ 128 (193)
.... .......+++..+.+++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~ 162 (169)
T cd02037 141 KIYIFGKGGGEKLAEELGVPLL 162 (169)
T ss_pred cccccCCccHHHHHHHcCCCEE
Confidence 1111 22355667777666544
No 402
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=68.14 E-value=41 Score=25.44 Aligned_cols=64 Identities=8% Similarity=-0.083 Sum_probs=42.8
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL 102 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 102 (193)
+.+.|+|+++.... .....+..+|.+|++...+ ..++..+...+..+.... ..++.++.|+.+-
T Consensus 112 ~D~viiD~p~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~iviN~~~~ 175 (261)
T TIGR01968 112 FDYVIIDCPAGIES--GFRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAKG---IEKIHLIVNRLRP 175 (261)
T ss_pred CCEEEEeCCCCcCH--HHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHcC---CCceEEEEeCcCc
Confidence 66788999876432 2345567889999988764 556777766666665432 2345688898874
No 403
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=66.11 E-value=32 Score=21.97 Aligned_cols=45 Identities=9% Similarity=0.069 Sum_probs=32.0
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHH
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMM 80 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~ 80 (193)
+.+.++|+++.... .....+..+|.+|++.+.+ ..++..+..+++
T Consensus 40 ~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~~-~~s~~~~~~~~~ 84 (104)
T cd02042 40 YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQPS-PLDLDGLEKLLE 84 (104)
T ss_pred CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccCC-HHHHHHHHHHHH
Confidence 66789999886532 2346677899999999764 556777766655
No 404
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=65.26 E-value=30 Score=29.07 Aligned_cols=86 Identities=13% Similarity=0.040 Sum_probs=45.7
Q ss_pred EEEEEEeeCCCcccccc-ch---hh--hccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCC
Q psy38 32 RIKLQLWDTAGQERFRS-IT---KS--YYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQS 105 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~-~~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 105 (193)
.+.+.|.||+|...... +. .. ...+.+-+++|.|++-... .......+.+.. .+--+|.||.|-..
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~---a~~~a~~F~~~~----~~~g~IlTKlD~~a- 253 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQA---AEAQAKAFKDSV----DVGSVIITKLDGHA- 253 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChh---HHHHHHHHHhcc----CCcEEEEECccCCC-
Confidence 46789999999754322 11 11 1225678999999865322 122222233221 23348899999643
Q ss_pred CCCCccCHHHHHHHHHhCCCcEEEec
Q psy38 106 GVPREVSEAEAKAFASQNDILHFETS 131 (193)
Q Consensus 106 ~~~~~v~~~~~~~~~~~~~~~~~~~S 131 (193)
..-.+.......+.|+..++
T Consensus 254 ------rgG~aLs~~~~t~~PI~fig 273 (429)
T TIGR01425 254 ------KGGGALSAVAATKSPIIFIG 273 (429)
T ss_pred ------CccHHhhhHHHHCCCeEEEc
Confidence 22223344455555555544
No 405
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=64.70 E-value=61 Score=24.75 Aligned_cols=67 Identities=6% Similarity=-0.021 Sum_probs=37.4
Q ss_pred EEEEEEeeCCCccccccch-hhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEE-EEeeC
Q psy38 32 RIKLQLWDTAGQERFRSIT-KSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFA-LVGCK 99 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK 99 (193)
.+.+.|+|++|......+. .....-+|.+|++...+ +.++..+...+..+.......+.++. ++.|+
T Consensus 116 ~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~-~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~ 184 (270)
T cd02040 116 DLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGE-MMALYAANNICKGILKYAKSGGVRLGGLICNS 184 (270)
T ss_pred CCCEEEEecccCcccCCcccccccccccEEEEEecCc-hHHHHHHHHHHHHHHHhCccCCCceEEEEEec
Confidence 4678899998754322221 22223589999998764 55666666555555444322234443 44454
No 406
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=64.37 E-value=25 Score=24.60 Aligned_cols=58 Identities=10% Similarity=0.011 Sum_probs=34.9
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCC
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLD 101 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 101 (193)
.+.+-|.||+|.... ...++..+|-+|++...+-.+.+.- ....+... .-+ ++.||.|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~---~k~~~~~~-----~~~-~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQA---IKAGIMEI-----ADI-VVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHH---hhhhHhhh-----cCE-EEEeCCC
Confidence 467889999886532 2348888998988887662222211 11122222 234 8899987
No 407
>KOG2485|consensus
Probab=62.21 E-value=36 Score=27.34 Aligned_cols=92 Identities=13% Similarity=-0.058 Sum_probs=48.6
Q ss_pred hhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEE
Q psy38 50 TKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129 (193)
Q Consensus 50 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~ 129 (193)
....++.+|.+|=+-|+--|-|-.. ..+.++.. ..|-|+|.||.||.+. .....-++.++......++.
T Consensus 40 i~~~l~~~D~iiEvrDaRiPLssrn--~~~~~~~~-----~k~riiVlNK~DLad~----~~~k~~iq~~~~~~~~~~~~ 108 (335)
T KOG2485|consen 40 IQNRLPLVDCIIEVRDARIPLSSRN--ELFQDFLP-----PKPRIIVLNKMDLADP----KEQKKIIQYLEWQNLESYIK 108 (335)
T ss_pred HHhhcccccEEEEeeccccCCcccc--HHHHHhcC-----CCceEEEEecccccCc----hhhhHHHHHHHhhcccchhh
Confidence 4566788999999998865422111 11222222 3456699999999661 22333344444443333443
Q ss_pred ecCC--CCcCHHHHHHHHHHHHHHH
Q psy38 130 TSSR--SGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 130 ~Sa~--~~~~i~e~f~~i~~~i~~~ 152 (193)
.+.. ...++..++..+.....+.
T Consensus 109 ~~c~~~~~~~v~~l~~il~~~~~~l 133 (335)
T KOG2485|consen 109 LDCNKDCNKQVSPLLKILTILSEEL 133 (335)
T ss_pred hhhhhhhhhccccHHHHHHHHHHHH
Confidence 3333 3333666666555544443
No 408
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=60.99 E-value=45 Score=26.86 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=51.2
Q ss_pred EEEEeeCCCccccccchhhhcc--------CccEEEEEEeCCChhH-HhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 34 KLQLWDTAGQERFRSITKSYYR--------NSVGALLVYDITSRAS-FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 34 ~l~l~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
..-++++.|...=.+....+.. ..|++|-++|+.+-.. ...+.....+..... -+ ||.||.|+.+
T Consensus 86 D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A-----D~-ivlNK~Dlv~ 159 (323)
T COG0523 86 DRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA-----DV-IVLNKTDLVD 159 (323)
T ss_pred CEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC-----cE-EEEecccCCC
Confidence 3456677775432122222211 3588999999876432 222334333334332 34 8999999966
Q ss_pred CCCCCccCHHHHHHHHHhCC--CcEEEecCCCCcCHHHHH
Q psy38 105 SGVPREVSEAEAKAFASQND--ILHFETSSRSGFQVENAF 142 (193)
Q Consensus 105 ~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~e~f 142 (193)
+ . ..+......+..+ +.++.++.. +....+++
T Consensus 160 ~---~--~l~~l~~~l~~lnp~A~i~~~~~~-~~~~~~ll 193 (323)
T COG0523 160 A---E--ELEALEARLRKLNPRARIIETSYG-DVDLAELL 193 (323)
T ss_pred H---H--HHHHHHHHHHHhCCCCeEEEcccc-CCCHHHhh
Confidence 2 2 1333344444443 578887774 34443333
No 409
>CHL00175 minD septum-site determining protein; Validated
Probab=60.35 E-value=62 Score=25.07 Aligned_cols=65 Identities=8% Similarity=-0.151 Sum_probs=42.2
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL 102 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 102 (193)
.+.+.++|+++.-. ......+..+|.++++.+.+ ..++..+...+..+.... . ..+-+|.|+.+-
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~~~-~--~~~~lvvN~~~~ 190 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEANG-I--YNVKLLVNRVRP 190 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHHcC-C--CceEEEEeccCh
Confidence 46788999987643 22334556789999888754 556776666666665532 2 234478899874
No 410
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=59.97 E-value=45 Score=25.60 Aligned_cols=69 Identities=12% Similarity=0.050 Sum_probs=38.9
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe-EEEEeeCCCC
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV-FALVGCKLDL 102 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 102 (193)
.+.+.+.||+|.-..... ...+.-+|.++++... +..++..+...+..+.........+ ..+|.|+.+-
T Consensus 115 ~yD~ViID~~~~~~~~~~-~~~l~aAD~vlip~~~-~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 115 DYDVILFDVLGDVVCGGF-ATPLQYADYALVVAAN-DFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred cCCEEEEecCCccccCcc-ccchhhcCEEEEEecC-chhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 467889999765321111 1335678999888755 3445555544444444322122343 3468898873
No 411
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=59.89 E-value=29 Score=28.43 Aligned_cols=40 Identities=10% Similarity=0.001 Sum_probs=29.3
Q ss_pred CCeEEEEeeCCCCCCCCCCCccC--HHHHHHHHHhCCCcEEEecCC
Q psy38 90 RPVFALVGCKLDLLQSGVPREVS--EAEAKAFASQNDILHFETSSR 133 (193)
Q Consensus 90 ~~piilv~nK~Dl~~~~~~~~v~--~~~~~~~~~~~~~~~~~~Sa~ 133 (193)
..|+++++||.|.... . .. .+..++++...+..++.+||.
T Consensus 206 ~KP~lyvaN~~e~~~~---~-~n~~~~~i~~~~~~~~~~vV~~sA~ 247 (372)
T COG0012 206 AKPMLYVANVSEDDLA---N-LNEYVKRLKELAAKENAEVVPVSAA 247 (372)
T ss_pred cCCeEEEEECCccccc---c-hhHHHHHHHHHhhhcCCcEEEeeHH
Confidence 4799999999997542 1 12 455667777777889999986
No 412
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=58.43 E-value=95 Score=26.34 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=46.7
Q ss_pred ccEEEEEEeCC----ChhHHhhH-HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEec
Q psy38 57 SVGALLVYDIT----SRASFEHI-PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131 (193)
Q Consensus 57 ~d~~i~v~d~~----~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~S 131 (193)
.-++++.-|-+ .++++.++ .+.+++++... .|++++.|-.+=. ..-+.+.+.++..+++++++.++
T Consensus 146 TIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~ig----KPFvillNs~~P~-----s~et~~L~~eL~ekY~vpVlpvn 216 (492)
T PF09547_consen 146 TIGIVVTTDGSITDIPRENYVEAEERVIEELKEIG----KPFVILLNSTKPY-----SEETQELAEELEEKYDVPVLPVN 216 (492)
T ss_pred ceeEEEecCCCccCCChHHHHHHHHHHHHHHHHhC----CCEEEEEeCCCCC-----CHHHHHHHHHHHHHhCCcEEEee
Confidence 45666666654 25677777 45777777653 6888888876632 33566777788888999988766
Q ss_pred CC
Q psy38 132 SR 133 (193)
Q Consensus 132 a~ 133 (193)
..
T Consensus 217 c~ 218 (492)
T PF09547_consen 217 CE 218 (492)
T ss_pred hH
Confidence 54
No 413
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=57.87 E-value=1e+02 Score=26.98 Aligned_cols=87 Identities=21% Similarity=0.148 Sum_probs=49.0
Q ss_pred EEEEEEeeCCCccccccc-h------hhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 32 RIKLQLWDTAGQERFRSI-T------KSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~-~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
...+.|+||+|....... . ... . ....++|++.+. +..++...+..+... .+.-+|.||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~-~~a~lLVLpAts--s~~Dl~eii~~f~~~-----~~~gvILTKlDEt~ 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAA-R-QVTSLLVLPANA--HFSDLDEVVRRFAHA-----KPQGVVLTKLDETG 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHh-h-cCCcEEEEECCC--ChhHHHHHHHHHHhh-----CCeEEEEecCcCcc
Confidence 467889999996433211 1 111 1 224566666653 233443333333321 24448999999633
Q ss_pred CCCCCccCHHHHHHHHHhCCCcEEEecCCC
Q psy38 105 SGVPREVSEAEAKAFASQNDILHFETSSRS 134 (193)
Q Consensus 105 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 134 (193)
....+.......+.++..++.-.
T Consensus 499 -------~lG~aLsv~~~~~LPI~yvt~GQ 521 (559)
T PRK12727 499 -------RFGSALSVVVDHQMPITWVTDGQ 521 (559)
T ss_pred -------chhHHHHHHHHhCCCEEEEeCCC
Confidence 44566677777888777665443
No 414
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=56.82 E-value=52 Score=24.05 Aligned_cols=68 Identities=13% Similarity=0.059 Sum_probs=41.1
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
.+.+.|+|++..... .......+.+|.+|++.+... .+...+..-++.+... ....+-+|.||.|...
T Consensus 127 ~yD~ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~~-~~~~~~~~~~~~l~~~---~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 127 YFDYIIIDTPPIGTV-TDAAIIARACDASILVTDAGE-IKKRDVQKAKEQLEQT---GSNFLGVVLNKVDISV 194 (204)
T ss_pred cCCEEEEeCCCcccc-chHHHHHHhCCeEEEEEECCC-CCHHHHHHHHHHHHhC---CCCEEEEEEeCccccc
Confidence 356778998863221 112334567899999998753 3455555555555443 2235557999998643
No 415
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=56.24 E-value=75 Score=23.06 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=30.8
Q ss_pred hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEE
Q psy38 69 RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129 (193)
Q Consensus 69 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~ 129 (193)
++.-.++..|+.++.... +.+++|.|.. ......++...+++|+.
T Consensus 45 ~~~tpe~~~W~~e~k~~g----i~v~vvSNn~------------e~RV~~~~~~l~v~fi~ 89 (175)
T COG2179 45 PDATPELRAWLAELKEAG----IKVVVVSNNK------------ESRVARAAEKLGVPFIY 89 (175)
T ss_pred CCCCHHHHHHHHHHHhcC----CEEEEEeCCC------------HHHHHhhhhhcCCceee
Confidence 344557889999999763 6677777743 33344677778888774
No 416
>PRK10818 cell division inhibitor MinD; Provisional
Probab=54.32 E-value=97 Score=23.74 Aligned_cols=68 Identities=6% Similarity=-0.111 Sum_probs=43.1
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhc----C-CCCCeEEEEeeCCCC
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHI----E-PHRPVFALVGCKLDL 102 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~-~~~~piilv~nK~Dl 102 (193)
.+.+.+.|+++.-.. .....+..+|.+|++.+.+ ..++..+..+++.+.... . .......+|.|..+.
T Consensus 113 ~yd~viiD~p~~~~~--~~~~~l~~ad~vivv~~p~-~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~ 185 (270)
T PRK10818 113 DFEFIVCDSPAGIET--GALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (270)
T ss_pred CCCEEEEeCCCCccH--HHHHHHHhCCeEEEEcCCC-chHHHhHHHHHHHHHHhhccccccccccceEEEEeccCH
Confidence 467889999876542 2344567899999998876 456666666666655321 1 112334577888774
No 417
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=52.63 E-value=16 Score=28.23 Aligned_cols=24 Identities=13% Similarity=0.110 Sum_probs=21.6
Q ss_pred CcEEEecCCCCcCHHHHHHHHHHH
Q psy38 125 ILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 125 ~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
++++..||+++.|++++++.+.+.
T Consensus 241 ~pv~~gSa~~~~G~~~ll~~~~~~ 264 (268)
T cd04170 241 VPVLCGSALTNIGVRELLDALVHL 264 (268)
T ss_pred EEEEEeeCCCCcCHHHHHHHHHHh
Confidence 489999999999999999998764
No 418
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=52.15 E-value=91 Score=26.89 Aligned_cols=69 Identities=12% Similarity=0.080 Sum_probs=47.7
Q ss_pred HhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEec--CCCCcCHHHHHHHHHHHH
Q psy38 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS--SRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 72 ~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~S--a~~~~~i~e~f~~i~~~i 149 (193)
+.++.+.++.+..+ ..|+++..|+..-.. +-..+..++++.+.++.+..+. ++-|.|-.++-+.+++.+
T Consensus 342 ~~NL~~Hi~n~~~f----g~p~VVaiN~F~~Dt-----~~Ei~~v~~~~~~~g~~~~~~~~~~~GG~Ga~eLA~~Vi~a~ 412 (524)
T cd00477 342 FANLRKHIENIKKF----GVPVVVAINKFSTDT-----DAELALVRKLAEEAGAFVAVSEHWAEGGKGAVELAEAVIEAC 412 (524)
T ss_pred HHHHHHHHHHHHHc----CCCeEEEecCCCCCC-----HHHHHHHHHHHHHcCCCEEEehhhhhhhhhHHHHHHHHHHHh
Confidence 45566666666654 478889999987433 2334556788888898766543 666778888888887654
No 419
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=51.34 E-value=99 Score=27.01 Aligned_cols=69 Identities=10% Similarity=-0.064 Sum_probs=46.3
Q ss_pred HhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEec--CCCCcCHHHHHHHHHHHH
Q psy38 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS--SRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 72 ~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~S--a~~~~~i~e~f~~i~~~i 149 (193)
+.++...++.+..+ ..|+++..|+..-.. .-..+..++++.+.++.+..+. ++-|.|-.++-+++++.+
T Consensus 387 ~~NL~~Hi~n~~~f----g~pvVVaiN~F~~Dt-----~~Ei~~l~~~~~~~g~~~~v~~~wa~GGeGa~eLA~~Vv~a~ 457 (587)
T PRK13507 387 CANLLHHIGTVKKS----GINPVVCINAFYTDT-----HAEIAIVRRLAEQAGARVAVSRHWEKGGEGALELADAVIDAC 457 (587)
T ss_pred HHHHHHHHHHHHHc----CCCeEEEeCCCCCCC-----HHHHHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHh
Confidence 34455666666654 478889999986433 2344556678888888665433 566778888888887654
No 420
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=48.82 E-value=19 Score=24.02 Aligned_cols=31 Identities=16% Similarity=0.117 Sum_probs=16.4
Q ss_pred EeeCCCCCCCCCCCccCHHHHHHHHHhCC-CcEEEecCC
Q psy38 96 VGCKLDLLQSGVPREVSEAEAKAFASQND-ILHFETSSR 133 (193)
Q Consensus 96 v~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~ 133 (193)
++||+|+.. ..+....+..++. ..++.|||.
T Consensus 1 AaNK~D~~~-------a~~ni~kl~~~~~~~~vVp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPA-------ADENIEKLKEKYPDEPVVPTSAA 32 (109)
T ss_dssp EEE-GGG-S--------HHHHHHHHHHHTT-EEEEE-HH
T ss_pred CCccccccc-------cHhHHHHHHHhCCCCceeeccHH
Confidence 589999743 4444555555443 577788875
No 421
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=48.23 E-value=1.3e+02 Score=23.51 Aligned_cols=88 Identities=16% Similarity=0.023 Sum_probs=49.9
Q ss_pred EEEEEEeeCCCcccccc-ch---hhhc--cCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCC
Q psy38 32 RIKLQLWDTAGQERFRS-IT---KSYY--RNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQS 105 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~-~~---~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 105 (193)
.+.+.++||+|...... +. ..++ ...+-+++|.|++.. .+++..++..+.. -.+-- ++.||.|-..
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~----~~~~~-~I~TKlDet~- 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD----IHIDG-IVFTKFDETA- 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC----CCCCE-EEEEeecCCC-
Confidence 36788999999754221 11 1222 134668899998642 2223333333322 22334 7899999533
Q ss_pred CCCCccCHHHHHHHHHhCCCcEEEecCC
Q psy38 106 GVPREVSEAEAKAFASQNDILHFETSSR 133 (193)
Q Consensus 106 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 133 (193)
..-.+..++...+.|+..++.-
T Consensus 226 ------~~G~~l~~~~~~~~Pi~~it~G 247 (270)
T PRK06731 226 ------SSGELLKIPAVSSAPIVLMTDG 247 (270)
T ss_pred ------CccHHHHHHHHHCcCEEEEeCC
Confidence 3445566777778877766543
No 422
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=48.02 E-value=62 Score=24.30 Aligned_cols=65 Identities=12% Similarity=0.022 Sum_probs=39.9
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL 102 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 102 (193)
.+.+.++|+++.... .....+..+|.+|++.+.+ ..++..+....+.... .....+.++.|+.+-
T Consensus 108 ~yD~VIiD~p~~~~~--~~~~~l~~ad~vliv~~~~-~~s~~~~~~~~~~~~~---~~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 108 DTDFLLIDAPAGLER--DAVTALAAADELLLVVNPE-ISSITDALKTKIVAEK---LGTAILGVVLNRVTR 172 (251)
T ss_pred hCCEEEEeCCCccCH--HHHHHHHhCCeEEEEECCC-CchHHHHHHHHHHHHh---cCCceEEEEEECCCc
Confidence 367889999876542 2344566789999999875 3455554443332222 122345589999875
No 423
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=46.97 E-value=1.4e+02 Score=23.54 Aligned_cols=111 Identities=15% Similarity=0.046 Sum_probs=58.3
Q ss_pred EEEEEEeeCCCcccc-ccchhhhccCccEEEEEEeCCChhHHhhH---HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCC
Q psy38 32 RIKLQLWDTAGQERF-RSITKSYYRNSVGALLVYDITSRASFEHI---PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGV 107 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~---~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 107 (193)
.+.+.++|+.|...- .........-+|.+|++.+.+ ..++..+ ...++.+.+. .....++-+|.|+.+...
T Consensus 122 ~yD~IliD~~~~~~~~g~~~~~a~~~Ad~viVvt~~e-~~sl~~a~~l~k~v~~~~~~-~~~v~i~GVV~N~~~~~~--- 196 (296)
T TIGR02016 122 DFDFVLMDFLGDVVCGGFATPLARSLAEEVIVIGSND-RQSLYVANNICNAVEYFRKL-GGRVGLLGLVVNRDDGSG--- 196 (296)
T ss_pred cCCEEEEecCCCccccccccchhhhhCCeEEEEecch-HHHHHHHHHHHHHHHHHHHc-CCCCcceEEEEeCCCCcc---
Confidence 477889998664210 001122223578888887653 3455443 3444433332 222345668999986421
Q ss_pred CCccCHHHHHHHHHhCCCcEEEec-----------------CCCCcCHHHHHHHHHHHHHHHhc
Q psy38 108 PREVSEAEAKAFASQNDILHFETS-----------------SRSGFQVENAFTAVTQEIYNRVQ 154 (193)
Q Consensus 108 ~~~v~~~~~~~~~~~~~~~~~~~S-----------------a~~~~~i~e~f~~i~~~i~~~~~ 154 (193)
...+++++.+++++..= +.......+.|..+.+.+.+...
T Consensus 197 -------~~~~~~~~~~i~vLg~IP~d~~i~~~~~~~~~~~~~~~~~~~~~f~~la~~i~~~~~ 253 (296)
T TIGR02016 197 -------EAQAFAREVGIPVLAAIPADEELRRKSLAYQIVGSHATPRFGKLFEELAGNVADAPP 253 (296)
T ss_pred -------HHHHHHHHcCCCeEEECCCCHHHHHHhcCCCeeecCCCHHHHHHHHHHHHHHHHhcC
Confidence 33456666665444210 00112266888888888877543
No 424
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=46.46 E-value=1.2e+02 Score=25.28 Aligned_cols=88 Identities=8% Similarity=0.047 Sum_probs=49.4
Q ss_pred EEEEEeeCCCccccccc----hhhhcc--CccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC
Q psy38 33 IKLQLWDTAGQERFRSI----TKSYYR--NSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG 106 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 106 (193)
+.+.|.||+|...+... ...+.. ..+.+++|.+.+. ...++...+.. ...-.+-- ++.||.|-..
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~----f~~l~i~g-lI~TKLDET~-- 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPK----LAEIPIDG-FIITKMDETT-- 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHh----cCcCCCCE-EEEEcccCCC--
Confidence 67889999998543221 122222 3466667776642 22233332222 12222334 7899999533
Q ss_pred CCCccCHHHHHHHHHhCCCcEEEecCCC
Q psy38 107 VPREVSEAEAKAFASQNDILHFETSSRS 134 (193)
Q Consensus 107 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 134 (193)
..-.+..++...+.|+..++.-.
T Consensus 357 -----~~G~~Lsv~~~tglPIsylt~GQ 379 (407)
T PRK12726 357 -----RIGDLYTVMQETNLPVLYMTDGQ 379 (407)
T ss_pred -----CccHHHHHHHHHCCCEEEEecCC
Confidence 45556677888888877766543
No 425
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=45.81 E-value=1.1e+02 Score=22.77 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=38.0
Q ss_pred CccEEEEEEeCCChhHHhhHHHHHHHHHHhcC----CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC
Q psy38 56 NSVGALLVYDITSRASFEHIPVWMMEAKRHIE----PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN 123 (193)
Q Consensus 56 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~ 123 (193)
+.|++|++-|+.|.-......+|.+.+..... +...|++.|..-.|.... ......+....|.+.+
T Consensus 42 ~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~--~~~~~~~~v~RF~~~F 111 (195)
T cd08166 42 QPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGE--EEDPIESKIRRFEKYF 111 (195)
T ss_pred CCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCC--CCCcCHHHHHHHHHhh
Confidence 68999999999986554444455554444332 334555555444588652 1223344455565554
No 426
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=45.81 E-value=1.4e+02 Score=23.02 Aligned_cols=67 Identities=6% Similarity=-0.031 Sum_probs=36.2
Q ss_pred EEEEEEeeCCCccccccc-hhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEE-EEeeC
Q psy38 32 RIKLQLWDTAGQERFRSI-TKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFA-LVGCK 99 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK 99 (193)
.+.+.++||+|..-...+ ......-+|.+|++...+ +.++..+..+++.+.........++. ++.|+
T Consensus 115 ~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~ 183 (275)
T TIGR01287 115 DLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGE-MMALYAANNICKGILKYAKSGGVRLGGLICNS 183 (275)
T ss_pred cCCEEEEeccCcceecceeeccccccccEEEEEecch-HHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcC
Confidence 467889999775422221 122233579999888764 55666665555544433222233433 44454
No 427
>KOG2961|consensus
Probab=43.07 E-value=1.2e+02 Score=21.72 Aligned_cols=53 Identities=13% Similarity=0.072 Sum_probs=41.6
Q ss_pred CeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38 91 PVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 91 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
.-++++.|-+-+.+ ..-+.+.+..+..+.|++++.-|.+....-.|+.+....
T Consensus 80 k~i~v~SNsaG~~~----~D~d~s~Ak~le~k~gIpVlRHs~kKP~ct~E~~~y~~~ 132 (190)
T KOG2961|consen 80 KDIAVFSNSAGLTE----YDHDDSKAKALEAKIGIPVLRHSVKKPACTAEEVEYHFG 132 (190)
T ss_pred ccEEEEecCcCccc----cCCchHHHHHHHHhhCCceEeecccCCCccHHHHHHHhC
Confidence 45668888887744 345778888899999999999999988888887776554
No 428
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.02 E-value=45 Score=31.86 Aligned_cols=50 Identities=24% Similarity=0.252 Sum_probs=33.1
Q ss_pred ccCccEEEEEEeCCCh-----h-H---HhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 54 YRNSVGALLVYDITSR-----A-S---FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 54 ~~~~d~~i~v~d~~~~-----~-s---~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
.+..+++|++.|+++. . . ...++.-+.++.+.. .-..|+++++||.|+..
T Consensus 212 ~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL-~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 212 RRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL-HARLPVYLVLTKADLLP 270 (1188)
T ss_pred CCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh-ccCCceEEEEecccccc
Confidence 3467999999999652 1 1 122344455565554 34589999999999843
No 429
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=42.88 E-value=59 Score=21.45 Aligned_cols=40 Identities=13% Similarity=-0.066 Sum_probs=25.9
Q ss_pred CccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeC
Q psy38 56 NSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCK 99 (193)
Q Consensus 56 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 99 (193)
+.|++. ++.+....+..+..+++.+++.. +..+++ ++|-+
T Consensus 50 ~pdvV~--iS~~~~~~~~~~~~~i~~l~~~~-~~~~~i-~vGG~ 89 (119)
T cd02067 50 DADAIG--LSGLLTTHMTLMKEVIEELKEAG-LDDIPV-LVGGA 89 (119)
T ss_pred CCCEEE--EeccccccHHHHHHHHHHHHHcC-CCCCeE-EEECC
Confidence 455554 45555667888899999998863 335676 44544
No 430
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=41.81 E-value=1.5e+02 Score=24.86 Aligned_cols=103 Identities=18% Similarity=0.161 Sum_probs=56.8
Q ss_pred EEEEEeeCCCcccccc----chhhhc--cCccEEEEEEeCCC-hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCC
Q psy38 33 IKLQLWDTAGQERFRS----ITKSYY--RNSVGALLVYDITS-RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQS 105 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 105 (193)
..+.+.||+|...... ....+. ....-.++|.|++. ...+.++ +... ..-..-- ++.||.|-..
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~---~~~f----~~~~~~~-~I~TKlDEt~- 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV---ISAY----QGHGIHG-CIITKVDEAA- 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH---HHHh----cCCCCCE-EEEEeeeCCC-
Confidence 4678999999654221 112221 12345778888874 3333332 2222 2222333 7899999533
Q ss_pred CCCCccCHHHHHHHHHhCCCcEEEecCCCCcCH-HHHHHHHHHHHHHH
Q psy38 106 GVPREVSEAEAKAFASQNDILHFETSSRSGFQV-ENAFTAVTQEIYNR 152 (193)
Q Consensus 106 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~e~f~~i~~~i~~~ 152 (193)
..-.+..++...++++..++. |.+| +++...-.+.+.+.
T Consensus 341 ------~~G~~l~~~~~~~lPi~yvt~--Gq~VP~Dl~~a~~~~lv~~ 380 (420)
T PRK14721 341 ------SLGIALDAVIRRKLVLHYVTN--GQKVPEDLHEANSRYLLHR 380 (420)
T ss_pred ------CccHHHHHHHHhCCCEEEEEC--CCCchhhhhhCCHHHHHHH
Confidence 445566777788887776554 4555 55554444444443
No 431
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=41.63 E-value=1.9e+02 Score=24.76 Aligned_cols=72 Identities=11% Similarity=0.033 Sum_probs=48.4
Q ss_pred HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEE--ecCCCCcCHHHHHHHHHHH
Q psy38 71 SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE--TSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 71 s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~--~Sa~~~~~i~e~f~~i~~~ 148 (193)
.|.++...++.++++ ..|+++.+||.-... +-......+++.++++++.. +=++-|.|-.++=.+++..
T Consensus 354 G~aNL~~Hi~Nikkf----gvp~VVAIN~F~tDt-----~~Ei~~i~~~~~~~gv~~~ls~vwakGg~Gg~eLA~kVv~~ 424 (554)
T COG2759 354 GFANLLKHIENIKKF----GVPVVVAINKFPTDT-----EAEIAAIEKLCEEHGVEVALSEVWAKGGEGGIELAKKVVEA 424 (554)
T ss_pred HHHHHHHHHHHHHHc----CCCeEEEeccCCCCC-----HHHHHHHHHHHHHcCCceeehhhhhccCccHHHHHHHHHHH
Confidence 355566666666655 478889999976322 22345566788888876554 3477788888888877776
Q ss_pred HHH
Q psy38 149 IYN 151 (193)
Q Consensus 149 i~~ 151 (193)
+-+
T Consensus 425 ~~~ 427 (554)
T COG2759 425 IEQ 427 (554)
T ss_pred HhC
Confidence 654
No 432
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=41.01 E-value=2.2e+02 Score=24.04 Aligned_cols=87 Identities=15% Similarity=-0.005 Sum_probs=49.4
Q ss_pred EEEEEeeCCCccccccc----hhhhc--cCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC
Q psy38 33 IKLQLWDTAGQERFRSI----TKSYY--RNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG 106 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 106 (193)
..+.|.||+|....... ...++ ...+.+++|.|++.. .+++..++..+.. -..-- ++.||.|-..
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~----~~idg-lI~TKLDET~-- 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD----IHIDG-IVFTKFDETA-- 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC----CCCCE-EEEEcccCCC--
Confidence 56889999997542211 12222 234678888887532 1233333333332 22333 7899999533
Q ss_pred CCCccCHHHHHHHHHhCCCcEEEecCC
Q psy38 107 VPREVSEAEAKAFASQNDILHFETSSR 133 (193)
Q Consensus 107 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 133 (193)
..-.+..++...++|+..++.-
T Consensus 392 -----k~G~iLni~~~~~lPIsyit~G 413 (436)
T PRK11889 392 -----SSGELLKIPAVSSAPIVLMTDG 413 (436)
T ss_pred -----CccHHHHHHHHHCcCEEEEeCC
Confidence 4445667777778877665543
No 433
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=40.99 E-value=1.6e+02 Score=24.79 Aligned_cols=93 Identities=18% Similarity=0.157 Sum_probs=51.5
Q ss_pred EEEEEeeCCCcccccc----chhhhcc---CccEEEEEEeCCCh-hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 33 IKLQLWDTAGQERFRS----ITKSYYR---NSVGALLVYDITSR-ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~----~~~~~~~---~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
..+.|.||+|...... ....++. ...-+++|.+.+-. ..+..+ +..+.. -..- =++.||.|-..
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~---~~~f~~----~~~~-~vI~TKlDet~ 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI---YKHFSR----LPLD-GLIFTKLDETS 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH---HHHhCC----CCCC-EEEEecccccc
Confidence 5788999999754321 1222333 23456777887542 233332 222221 1122 37899999532
Q ss_pred CCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCH-HHHH
Q psy38 105 SGVPREVSEAEAKAFASQNDILHFETSSRSGFQV-ENAF 142 (193)
Q Consensus 105 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~e~f 142 (193)
....+..++...++++..++.- .+| +++.
T Consensus 372 -------~~G~i~~~~~~~~lPv~yit~G--q~VpdDl~ 401 (424)
T PRK05703 372 -------SLGSILSLLIESGLPISYLTNG--QRVPDDIK 401 (424)
T ss_pred -------cccHHHHHHHHHCCCEEEEeCC--CCChhhhh
Confidence 3445677888888887776544 444 4443
No 434
>KOG2052|consensus
Probab=40.87 E-value=59 Score=27.56 Aligned_cols=51 Identities=14% Similarity=0.186 Sum_probs=42.9
Q ss_pred EEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHH
Q psy38 34 KLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKR 84 (193)
Q Consensus 34 ~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 84 (193)
++++..+-|.-+|.+.|+..+++-++++=+|+..+..||-.-.+.++-+.-
T Consensus 212 qI~L~e~IGkGRyGEVwrG~wrGe~VAVKiF~srdE~SWfrEtEIYqTvmL 262 (513)
T KOG2052|consen 212 QIVLQEIIGKGRFGEVWRGRWRGEDVAVKIFSSRDERSWFRETEIYQTVML 262 (513)
T ss_pred eeEEEEEecCccccceeeccccCCceEEEEecccchhhhhhHHHHHHHHHh
Confidence 577889999999999999999999999999999998887766665555443
No 435
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=40.40 E-value=36 Score=29.49 Aligned_cols=70 Identities=7% Similarity=0.039 Sum_probs=43.0
Q ss_pred HhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEec--CCCCcCHHHHHHHHHHHH
Q psy38 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS--SRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 72 ~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~S--a~~~~~i~e~f~~i~~~i 149 (193)
|.++.+.++.+..+ ..|+++..|+..-.. .-..+..++++.+.|+.+..+. ++=|.|-.++-+.+++.+
T Consensus 357 ~~NL~rHIeNik~f----GvpvVVAIN~F~tDT-----~aEi~~I~~~~~~~Gv~~avs~~wa~GGeGa~eLA~~Vv~a~ 427 (557)
T PF01268_consen 357 FANLERHIENIKKF----GVPVVVAINRFPTDT-----DAEIELIRELCEELGVRAAVSEHWAKGGEGAVELAEAVVEAC 427 (557)
T ss_dssp HHHHHHHHHHHHCT----T--EEEEEE--TTS------HHHHHHHHHHCCCCCEEEEEC-HHHHGGGGCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhc----CCCeEEEecCCCCCC-----HHHHHHHHHHHHhCCCCEEEechhhcccccHHHHHHHHHHHh
Confidence 55566666666654 478889999976432 1233556678888888755433 566888889888888877
Q ss_pred H
Q psy38 150 Y 150 (193)
Q Consensus 150 ~ 150 (193)
.
T Consensus 428 e 428 (557)
T PF01268_consen 428 E 428 (557)
T ss_dssp H
T ss_pred h
Confidence 3
No 436
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=40.33 E-value=98 Score=19.74 Aligned_cols=40 Identities=10% Similarity=0.014 Sum_probs=25.9
Q ss_pred chhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEE
Q psy38 49 ITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFAL 95 (193)
Q Consensus 49 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 95 (193)
..+..+..+|++|++-|.-+-.....+ .+.....+.|++.
T Consensus 41 ~l~~~i~~aD~VIv~t~~vsH~~~~~v-------k~~akk~~ip~~~ 80 (97)
T PF10087_consen 41 RLPSKIKKADLVIVFTDYVSHNAMWKV-------KKAAKKYGIPIIY 80 (97)
T ss_pred HHHHhcCCCCEEEEEeCCcChHHHHHH-------HHHHHHcCCcEEE
Confidence 467778889999999988765544433 3333334578744
No 437
>KOG1432|consensus
Probab=40.14 E-value=1.6e+02 Score=24.19 Aligned_cols=73 Identities=14% Similarity=0.058 Sum_probs=41.5
Q ss_pred ccCccEEEEEEeCCChhHHhhHHH-HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecC
Q psy38 54 YRNSVGALLVYDITSRASFEHIPV-WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132 (193)
Q Consensus 54 ~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa 132 (193)
.+..|.++|.-|.-...+..++.. |.+.+.-.....-+-.++.||.-|. ..++..+..++....-..+..++.
T Consensus 98 sE~PDlVVfTGD~i~g~~t~Da~~sl~kAvaP~I~~~IPwA~~lGNHDde------s~ltr~ql~~~i~~lP~s~~~v~p 171 (379)
T KOG1432|consen 98 SEKPDLVVFTGDNIFGHSTQDAATSLMKAVAPAIDRKIPWAAVLGNHDDE------SDLTRLQLMKFISKLPYSLSQVNP 171 (379)
T ss_pred ccCCCEEEEeCCcccccccHhHHHHHHHHhhhHhhcCCCeEEEecccccc------cccCHHHHHHHHhcCCCccccCCC
Confidence 456799999998866555555533 5444444433333444456666443 336777777776665444444433
No 438
>PRK14725 pyruvate kinase; Provisional
Probab=39.46 E-value=1.7e+02 Score=25.89 Aligned_cols=81 Identities=14% Similarity=0.008 Sum_probs=53.8
Q ss_pred hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 69 RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 69 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
.-.|+.+...-++|...+.....|+ |++|.. |++-......+..+.-..+...+..++..| .|....+....+.+.
T Consensus 514 Ei~~e~lp~iQk~Ii~~c~~~~kPV-I~ATQm-LESM~~~p~PTRAEvtDVAnAvgaD~VMLS--~G~yPveAV~~l~~I 589 (608)
T PRK14725 514 EVGFERLAEVQEEILWLCEAAHVPV-IWATQV-LESLAKKGLPSRAEITDAAMALRAECVMLN--KGPHIVEAVRVLDDI 589 (608)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCE-EEEcch-HhhhccCCCCCchhHHHHHhhhcCCEEeec--CCCCHHHHHHHHHHH
Confidence 3345555555555666666667888 566664 322222345677777777776788888888 788899998888876
Q ss_pred HHHHh
Q psy38 149 IYNRV 153 (193)
Q Consensus 149 i~~~~ 153 (193)
+....
T Consensus 590 ~~r~e 594 (608)
T PRK14725 590 LRRME 594 (608)
T ss_pred HHHHH
Confidence 65544
No 439
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=39.45 E-value=24 Score=24.05 Aligned_cols=37 Identities=16% Similarity=0.068 Sum_probs=27.1
Q ss_pred CCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecC
Q psy38 89 HRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132 (193)
Q Consensus 89 ~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa 132 (193)
...|++++|.-... .-..++..+++...+++++.+-.
T Consensus 11 A~rP~il~G~g~~~-------~~a~~~l~~lae~~~~Pv~~t~~ 47 (137)
T PF00205_consen 11 AKRPVILAGRGARR-------SGAAEELRELAEKLGIPVATTPM 47 (137)
T ss_dssp -SSEEEEE-HHHHH-------TTCHHHHHHHHHHHTSEEEEEGG
T ss_pred CCCEEEEEcCCcCh-------hhHHHHHHHHHHHHCCCEEecCc
Confidence 35799999977653 24678888999999999987643
No 440
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=38.26 E-value=2.2e+02 Score=23.20 Aligned_cols=94 Identities=18% Similarity=0.144 Sum_probs=52.1
Q ss_pred cEEEEEEeeCCCcccccc-c------hhhhccCccE-----EEEEEeCCCh-hHHhhHHHHHHHHHHhcCCCCCeEEEEe
Q psy38 31 ARIKLQLWDTAGQERFRS-I------TKSYYRNSVG-----ALLVYDITSR-ASFEHIPVWMMEAKRHIEPHRPVFALVG 97 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~~-~------~~~~~~~~d~-----~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~ 97 (193)
+.+.+.+.||+|.-.... + .....+..+. ++++.|++-. +.++.++.+ .+.. ..-- ++.
T Consensus 220 r~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F----~eav---~l~G-iIl 291 (340)
T COG0552 220 RGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIF----NEAV---GLDG-IIL 291 (340)
T ss_pred cCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHH----HHhc---CCce-EEE
Confidence 457788999999743221 1 1122333333 7777788763 455555443 2222 1334 789
Q ss_pred eCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHH
Q psy38 98 CKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENA 141 (193)
Q Consensus 98 nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~ 141 (193)
||.|-... -.+ ....+...++|+..+.. |++++++
T Consensus 292 TKlDgtAK---GG~----il~I~~~l~~PI~fiGv--GE~~~DL 326 (340)
T COG0552 292 TKLDGTAK---GGI----ILSIAYELGIPIKFIGV--GEGYDDL 326 (340)
T ss_pred EecccCCC---cce----eeeHHHHhCCCEEEEeC--CCChhhc
Confidence 99995331 112 23566777888887654 4455544
No 441
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=38.05 E-value=1.3e+02 Score=20.60 Aligned_cols=97 Identities=6% Similarity=-0.028 Sum_probs=53.3
Q ss_pred EEEeeCCCccccccchhhhc-cCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCH
Q psy38 35 LQLWDTAGQERFRSITKSYY-RNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113 (193)
Q Consensus 35 l~l~D~~g~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~ 113 (193)
+.+.|.++...-........ .++|++ +.+..+..+.+.+...+..+.+.. ...+++++-|+..+
T Consensus 31 feVi~lg~~~s~e~~v~aa~e~~adii--~iSsl~~~~~~~~~~~~~~L~~~g-~~~i~vivGG~~~~------------ 95 (132)
T TIGR00640 31 FDVDVGPLFQTPEEIARQAVEADVHVV--GVSSLAGGHLTLVPALRKELDKLG-RPDILVVVGGVIPP------------ 95 (132)
T ss_pred cEEEECCCCCCHHHHHHHHHHcCCCEE--EEcCchhhhHHHHHHHHHHHHhcC-CCCCEEEEeCCCCh------------
Confidence 55667665433222222222 245555 445555566777777788877754 33566643333321
Q ss_pred HHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 114 AEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 114 ~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
++. +.....|+ .+| -.|.++.++..++.+.+..
T Consensus 96 ~~~-~~l~~~Gvd~~~----~~gt~~~~i~~~l~~~~~~ 129 (132)
T TIGR00640 96 QDF-DELKEMGVAEIF----GPGTPIPESAIFLLKKLRK 129 (132)
T ss_pred HhH-HHHHHCCCCEEE----CCCCCHHHHHHHHHHHHHH
Confidence 111 23555787 444 2355888998888886654
No 442
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=37.95 E-value=2.3e+02 Score=23.40 Aligned_cols=95 Identities=15% Similarity=0.044 Sum_probs=50.0
Q ss_pred EEEEEEeeCCCccccccch----hhh--ccCccEEEEEEeCCC-hhHHhhHHHHHHHHHHhcCC--CCCeEEEEeeCCCC
Q psy38 32 RIKLQLWDTAGQERFRSIT----KSY--YRNSVGALLVYDITS-RASFEHIPVWMMEAKRHIEP--HRPVFALVGCKLDL 102 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl 102 (193)
...+.++||+|...+.... ... .....-.++|.+++. .+.+.++..-+......... ..+-- +|.||.|-
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~-~I~TKlDE 293 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAG-CILTKLDE 293 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCE-EEEecccc
Confidence 3578899999976433221 111 122345688888876 33444442222222110000 01223 67899995
Q ss_pred CCCCCCCccCHHHHHHHHHhCCCcEEEecCCC
Q psy38 103 LQSGVPREVSEAEAKAFASQNDILHFETSSRS 134 (193)
Q Consensus 103 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 134 (193)
.. ..-.+..++...+.++..++.-.
T Consensus 294 t~-------~~G~~l~~~~~~~lPi~yvt~Gq 318 (374)
T PRK14722 294 AS-------NLGGVLDTVIRYKLPVHYVSTGQ 318 (374)
T ss_pred CC-------CccHHHHHHHHHCcCeEEEecCC
Confidence 32 44556677777788777665443
No 443
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=37.74 E-value=1.7e+02 Score=24.48 Aligned_cols=87 Identities=18% Similarity=0.149 Sum_probs=49.3
Q ss_pred EEEEEEeeCCCccccccch----hhhccC--ccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCC
Q psy38 32 RIKLQLWDTAGQERFRSIT----KSYYRN--SVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQS 105 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~----~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 105 (193)
.+.+.|.||+|...+.... ..++.- ..-+.+|++++.. .+++...+..+... +..- ++.||.|--
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~----~i~~-~I~TKlDET-- 351 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF----PIDG-LIFTKLDET-- 351 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC----Ccce-eEEEccccc--
Confidence 3578899999986654432 333332 2445677777653 33444443333322 2333 679999943
Q ss_pred CCCCccCHHHHHHHHHhCCCcEEEecC
Q psy38 106 GVPREVSEAEAKAFASQNDILHFETSS 132 (193)
Q Consensus 106 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa 132 (193)
-+.-....+....+.|+..++.
T Consensus 352 -----~s~G~~~s~~~e~~~PV~YvT~ 373 (407)
T COG1419 352 -----TSLGNLFSLMYETRLPVSYVTN 373 (407)
T ss_pred -----CchhHHHHHHHHhCCCeEEEeC
Confidence 3455566667666666555443
No 444
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=37.40 E-value=68 Score=22.01 Aligned_cols=41 Identities=7% Similarity=0.155 Sum_probs=29.4
Q ss_pred cCccEEEEEEeCCChhHHhhHHHHHHHHHHhcC-CCCCeEEE
Q psy38 55 RNSVGALLVYDITSRASFEHIPVWMMEAKRHIE-PHRPVFAL 95 (193)
Q Consensus 55 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piil 95 (193)
++-|+.|+.+-++...+-+.+..|+..+.+-.. ...+|+++
T Consensus 82 eq~dGti~Amc~tg~~~~~sL~~WI~~Lq~~NP~L~~ipV~F 123 (126)
T PF14784_consen 82 EQEDGTIFAMCMTGTSDKDSLLSWIRGLQETNPNLAQIPVLF 123 (126)
T ss_pred EeccceEEEEEeccCCCHHHHHHHHHHHHhhCCchhcceEEE
Confidence 356888888888777777788999998887432 34677743
No 445
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=37.34 E-value=64 Score=26.03 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=40.2
Q ss_pred cccc-chhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh
Q psy38 45 RFRS-ITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ 122 (193)
Q Consensus 45 ~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~ 122 (193)
.|++ .....+++||+|| |+|+ |.-.+.++..+.++. ..++|+||..- ++..+...+.+.
T Consensus 123 DFrS~E~i~Ll~eADIVV-----TNPP-FSLFrEyv~~Li~~~----KkFlIIGN~Na---------iTYkeiFplik~ 182 (336)
T PF13651_consen 123 DFRSDECIELLKEADIVV-----TNPP-FSLFREYVAQLIEYD----KKFLIIGNINA---------ITYKEIFPLIKE 182 (336)
T ss_pred CcCcHHHHHHHhcCCEEE-----eCCC-cHHHHHHHHHHHHhC----CCEEEEecccc---------ccHHHHHHHHhc
Confidence 3443 3456788999997 7763 555666777777763 56889998843 567777666665
No 446
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=37.12 E-value=76 Score=21.66 Aligned_cols=62 Identities=11% Similarity=0.043 Sum_probs=40.9
Q ss_pred eEEEEeeCCCCCCCCCCCc---cCHHHHHHHHHhCC-----CcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 92 VFALVGCKLDLLQSGVPRE---VSEAEAKAFASQND-----ILHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 92 piilv~nK~Dl~~~~~~~~---v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
-++++|-|.+--.-..... -..+...++..+.+ +.++.+||..++.+.+.++.+++++.+.-
T Consensus 56 GV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~efv~~i~~lG 125 (132)
T COG1908 56 GVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIEPERVRVLWISAAEGEKFAETINEFVERIKELG 125 (132)
T ss_pred eEEEecccccceeeeccchHHHHHHHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHHHHHHHHhC
Confidence 4568888876421100111 11244455666655 46899999999999999999999887753
No 447
>PRK04004 translation initiation factor IF-2; Validated
Probab=37.02 E-value=40 Score=29.58 Aligned_cols=25 Identities=8% Similarity=0.165 Sum_probs=21.7
Q ss_pred CCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 124 DILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 124 ~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
.++++.+||.+|.|+++++..+...
T Consensus 192 ~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 192 TVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred CceEeeccCCCCCChHHHHHHHHHH
Confidence 3689999999999999999888653
No 448
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=36.38 E-value=2.4e+02 Score=24.79 Aligned_cols=69 Identities=7% Similarity=-0.073 Sum_probs=45.1
Q ss_pred HhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh-CCCcEEEec--CCCCcCHHHHHHHHHHH
Q psy38 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDILHFETS--SRSGFQVENAFTAVTQE 148 (193)
Q Consensus 72 ~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-~~~~~~~~S--a~~~~~i~e~f~~i~~~ 148 (193)
+.++.+.++.+..+ ..|+++..|+..-.. +-..+..++++.. .++.+..+. ++-|.|-.++-+.+++.
T Consensus 379 ~~NL~~Hi~n~~~f----g~pvVVaiN~F~~Dt-----~~Ei~~~~~~~~~~~~~~~~~~~~wa~GGeGa~eLA~~Vv~a 449 (578)
T PRK13506 379 FANLKWHINNVAQY----GLPVVVAINRFPTDT-----DEELEWLKEAVLLTGAFGCEISEAFAQGGEGATALAQAVVRA 449 (578)
T ss_pred HHHHHHHHHHHHHc----CCCeEEEecCCCCCC-----HHHHHHHHHHHHHcCCCcEEEechhhccchhHHHHHHHHHHH
Confidence 34555566666654 478889999986432 1234556678877 566655443 66678888888888865
Q ss_pred H
Q psy38 149 I 149 (193)
Q Consensus 149 i 149 (193)
+
T Consensus 450 ~ 450 (578)
T PRK13506 450 C 450 (578)
T ss_pred h
Confidence 4
No 449
>KOG0052|consensus
Probab=35.88 E-value=1.5e+02 Score=24.60 Aligned_cols=74 Identities=12% Similarity=0.015 Sum_probs=43.8
Q ss_pred CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC-----hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38 29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS-----RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL 103 (193)
Q Consensus 29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~-----~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 103 (193)
....+.+.+.|.+|+..+......-...+|..++...+.- ..+++...+- ...-.......+.++..||.|-.
T Consensus 78 ~t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~e--halla~tlgv~qliv~v~k~D~~ 155 (391)
T KOG0052|consen 78 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE--HALLAFTLGVKQLIVGVNKMDST 155 (391)
T ss_pred cceeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhh--hhhhhccccceeeeEEeeccccc
Confidence 4467888999999998877655555667777777666621 1122222111 11111123346677889999965
Q ss_pred C
Q psy38 104 Q 104 (193)
Q Consensus 104 ~ 104 (193)
.
T Consensus 156 ~ 156 (391)
T KOG0052|consen 156 E 156 (391)
T ss_pred C
Confidence 4
No 450
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.82 E-value=1.5e+02 Score=25.04 Aligned_cols=89 Identities=24% Similarity=0.111 Sum_probs=49.3
Q ss_pred EEEEEEeeCCCcccccc-c---hhhhcc-----CccEEEEEEeCCChh-HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCC
Q psy38 32 RIKLQLWDTAGQERFRS-I---TKSYYR-----NSVGALLVYDITSRA-SFEHIPVWMMEAKRHIEPHRPVFALVGCKLD 101 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~-~---~~~~~~-----~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 101 (193)
...+.++||+|...... . +..++. ...-.++|.|++... ...++ +... ..-+..- +|.||.|
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~---~~~f----~~~~~~g-lIlTKLD 370 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTV---LKAY----ESLNYRR-ILLTKLD 370 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHH---HHHh----cCCCCCE-EEEEccc
Confidence 35678999999643211 1 122221 234577899987642 33332 2222 1222334 7899999
Q ss_pred CCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCC
Q psy38 102 LLQSGVPREVSEAEAKAFASQNDILHFETSSRSG 135 (193)
Q Consensus 102 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 135 (193)
-.. ..-.+..++...+.|+..++.-.+
T Consensus 371 Et~-------~~G~il~i~~~~~lPI~ylt~GQ~ 397 (432)
T PRK12724 371 EAD-------FLGSFLELADTYSKSFTYLSVGQE 397 (432)
T ss_pred CCC-------CccHHHHHHHHHCCCEEEEecCCC
Confidence 533 344466777777887776665443
No 451
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=35.40 E-value=59 Score=23.34 Aligned_cols=66 Identities=20% Similarity=0.160 Sum_probs=35.7
Q ss_pred EEEEEeeCCCccccccc--hh-h--hccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 33 IKLQLWDTAGQERFRSI--TK-S--YYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~--~~-~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
...-|.++.|...-..+ .. . ..-..+.+|.+.|+.+-.........+...... .-+ +|.||+|+.+
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~-----ADv-IvlnK~D~~~ 155 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF-----ADV-IVLNKIDLVS 155 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SE-EEEE-GGGHH
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh-----cCE-EEEeccccCC
Confidence 34456677775443333 00 0 012458899999997754445554433333333 235 8899999854
No 452
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=35.16 E-value=65 Score=21.30 Aligned_cols=49 Identities=22% Similarity=0.120 Sum_probs=29.2
Q ss_pred EEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHH
Q psy38 35 LQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKR 84 (193)
Q Consensus 35 l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 84 (193)
+.+||..|+..-.......-+.+-+++++++. ++++-..+.......+.
T Consensus 38 lTv~Da~GqW~~~~~g~~~rE~Skvv~i~~~~-~~~~~~~i~~Ir~~Yk~ 86 (104)
T PF12098_consen 38 LTVLDAYGQWRDRATGRLIRERSKVVIIVHPD-TPAAEARIEAIREAYKQ 86 (104)
T ss_pred ceEEeccceEecCCCCcEeecccEEEEEEeCC-ChHHHHHHHHHHHHHHH
Confidence 78999999977544445555567777777754 34443334333333333
No 453
>cd08047 TAF7 TATA Binding Protein (TBP) Associated Factor 7 (TAF7) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 7 (TAF7) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving
Probab=34.97 E-value=75 Score=22.73 Aligned_cols=55 Identities=20% Similarity=0.205 Sum_probs=40.7
Q ss_pred CcceeeEEEEEEEecCCcEEEEEEeeCCCccccccc--hhhhccCccE--EEEEEeCCCh
Q psy38 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSI--TKSYYRNSVG--ALLVYDITSR 69 (193)
Q Consensus 14 pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~--~~~~~~~~d~--~i~v~d~~~~ 69 (193)
++...|.....+.+ +|..+.-.+.|.|..-+.... ...+|+.+|+ .++|+...+.
T Consensus 32 ~~~~~d~R~~~v~v-~~~~y~a~LvdLPtiiEs~KT~D~k~~yKtaDI~QMliv~~~~~~ 90 (162)
T cd08047 32 ITLFEDSRRAVVRI-NGQKYPAKLVDLPTIIESHKTLDKKNLYKTADISQMLIVYEPDDS 90 (162)
T ss_pred cccCCCCcEEEEEE-CCEEcceEEeecCceeeeeeccccCceEEecChhhEEEEecCCCc
Confidence 55566788888888 999999999999886443332 3568998887 6778876554
No 454
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=34.77 E-value=38 Score=26.40 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=22.0
Q ss_pred CcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 125 ILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 125 ~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
+|+|..||.++.|+.++++.+...+
T Consensus 243 ~PV~~gSa~~~~Gi~~lld~i~~~~ 267 (270)
T cd01886 243 VPVLCGSAFKNKGVQPLLDAVVDYL 267 (270)
T ss_pred EEEEeCcCCCCcCHHHHHHHHHHhc
Confidence 4899999999999999999988743
No 455
>PLN02759 Formate--tetrahydrofolate ligase
Probab=34.41 E-value=2.3e+02 Score=25.17 Aligned_cols=69 Identities=9% Similarity=-0.065 Sum_probs=45.5
Q ss_pred HhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEec--CCCCcCHHHHHHHHHHH
Q psy38 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETS--SRSGFQVENAFTAVTQE 148 (193)
Q Consensus 72 ~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~S--a~~~~~i~e~f~~i~~~ 148 (193)
+.++...++.+..+ ..|+++.+|+..-.. .-..+..++++.+.|+ .+..+. ++-|.|-.++-+.+++.
T Consensus 436 ~~NL~~Hi~n~~~f----g~pvVVaiN~F~~Dt-----~~Ei~~v~~~~~~~ga~~~~~~~~wa~GGeGa~eLA~~Vv~a 506 (637)
T PLN02759 436 CVNLARHIENTKSY----GVNVVVAINMFATDT-----EAELEAVRQAALAAGAFDAVLCTHHAHGGKGAVDLGEAVQKA 506 (637)
T ss_pred hhhHHHHHHHHHHc----CCCeEEEecCCCCCC-----HHHHHHHHHHHHHcCCCcEEEechhhcccHHHHHHHHHHHHH
Confidence 33445555555553 478889999986533 2344566778888884 665444 56677888888888765
Q ss_pred H
Q psy38 149 I 149 (193)
Q Consensus 149 i 149 (193)
+
T Consensus 507 ~ 507 (637)
T PLN02759 507 C 507 (637)
T ss_pred H
Confidence 4
No 456
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=33.67 E-value=1.4e+02 Score=23.64 Aligned_cols=51 Identities=12% Similarity=-0.021 Sum_probs=36.9
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHh
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRH 85 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 85 (193)
.+.+.++|+++... ......+..+|.++++.+.+ ..++..+.+++..+...
T Consensus 204 ~~D~VIID~p~~~~--~~~~~~L~~AD~vliV~~~~-~~sl~~a~r~l~~l~~~ 254 (322)
T TIGR03815 204 GGDLVVVDLPRRLT--PAAETALESADLVLVVVPAD-VRAVAAAARVCPELGRR 254 (322)
T ss_pred cCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEcCCc-HHHHHHHHHHHHHHhhh
Confidence 36788999987643 33566788899999999764 55777777777766654
No 457
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=33.60 E-value=1.3e+02 Score=19.26 Aligned_cols=51 Identities=12% Similarity=0.142 Sum_probs=34.5
Q ss_pred chhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCC
Q psy38 49 ITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLD 101 (193)
Q Consensus 49 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 101 (193)
+....++++..+++-+.....-++.++....+.+.+... +..-+ +.|...|
T Consensus 28 Ll~~~i~~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~-~~a~i-i~G~~id 78 (95)
T PF12327_consen 28 LLDVDIKGAKGVLVNITGGPDLSLSEVNEAMEIIREKAD-PDANI-IWGASID 78 (95)
T ss_dssp TSTS-GGG-SEEEEEEEE-TTS-HHHHHHHHHHHHHHSS-TTSEE-EEEEEE-
T ss_pred cccCChHHhceEEEEEEcCCCCCHHHHHHHHHHHHHHhh-cCceE-EEEEEEC
Confidence 444667889999999988776789999888888888765 34454 5676665
No 458
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=33.50 E-value=1.1e+02 Score=18.41 Aligned_cols=64 Identities=8% Similarity=-0.165 Sum_probs=36.2
Q ss_pred EEEEeeCCCccccccc-hhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEee
Q psy38 34 KLQLWDTAGQERFRSI-TKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGC 98 (193)
Q Consensus 34 ~l~l~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 98 (193)
.+.+.|+++....... .......+|.++++.+.+. .+........+...........++.++.|
T Consensus 35 d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 35 DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEA-LAVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCch-hhHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 4678898876543221 1456667899999987754 34444444433333333344455555543
No 459
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=33.31 E-value=84 Score=23.33 Aligned_cols=36 Identities=17% Similarity=0.099 Sum_probs=31.4
Q ss_pred CHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38 112 SEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
...+-.+++++++++++-+|+-...-|..+|+.++.
T Consensus 77 ~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivg 112 (220)
T COG4359 77 GFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVG 112 (220)
T ss_pred cHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhcc
Confidence 456677899999999999999999999999988873
No 460
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=33.29 E-value=38 Score=26.34 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=22.0
Q ss_pred CcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 125 ILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 125 ~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
+|++..||.++.|+..+++.|.+.+
T Consensus 240 ~Pv~~gsa~~~~Gv~~Lld~i~~~~ 264 (267)
T cd04169 240 TPVFFGSALNNFGVQELLDALVDLA 264 (267)
T ss_pred EEEEecccccCcCHHHHHHHHHHHC
Confidence 4899999999999999999988753
No 461
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=32.03 E-value=1.6e+02 Score=22.96 Aligned_cols=87 Identities=13% Similarity=0.184 Sum_probs=50.4
Q ss_pred CccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCC
Q psy38 56 NSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSG 135 (193)
Q Consensus 56 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 135 (193)
.+..+|+.-|++.. ++..|+..+.... ++|+++|.+|.+|.. .+......++-+. ..|
T Consensus 148 KAkLVIIA~DVsPi----e~vk~LpaLCrk~---~VPY~iVktKaeLG~--------------AIGkKtravVAIt-D~g 205 (263)
T PTZ00222 148 QARMVVIANNVDPV----ELVLWMPNLCRAN---KIPYAIVKDMARLGD--------------AIGRKTATCVAIT-DVN 205 (263)
T ss_pred CceEEEEeCCCCHH----HHHHHHHHHHHhc---CCCEEEECCHHHHHH--------------HHCCCCCeEEEEe-eCC
Confidence 46677777777543 3445666666654 589989999988743 1112122233222 134
Q ss_pred cCHHHHHHHHHHHHHHHhcCCCccccCCc
Q psy38 136 FQVENAFTAVTQEIYNRVQSGDYKVEDGW 164 (193)
Q Consensus 136 ~~i~e~f~~i~~~i~~~~~~~~~~~~~~~ 164 (193)
..-...|..+++.+..++.+.-...-+.|
T Consensus 206 ~ed~~~l~~lv~~~~~~~nd~~~e~rr~w 234 (263)
T PTZ00222 206 AEDEAALKNLIRSVNARFLSRSDVIRRQW 234 (263)
T ss_pred cccHHHHHHHHHHHHHhhccchHHHHhhc
Confidence 45567788888887777766443333333
No 462
>PF07034 ORC3_N: Origin recognition complex (ORC) subunit 3 N-terminus; InterPro: IPR020795 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. ; GO: 0003677 DNA binding, 0006260 DNA replication, 0005664 nuclear origin of replication recognition complex
Probab=30.74 E-value=67 Score=25.84 Aligned_cols=86 Identities=8% Similarity=0.099 Sum_probs=51.2
Q ss_pred ChhHHhhHHHHHHHHHHhcCC-----------CCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh-CCCcEEEecCCCC
Q psy38 68 SRASFEHIPVWMMEAKRHIEP-----------HRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDILHFETSSRSG 135 (193)
Q Consensus 68 ~~~s~~~~~~~~~~i~~~~~~-----------~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~ 135 (193)
+...|+++..|+..-...... ..+|..++.+-....+ .....+...+..++ .+..+...++++-
T Consensus 54 n~~~f~~l~~Fi~~~~~~~~~~~~~~~~~~~~~~IPtA~lltGvN~~d----h~~~F~~L~~~L~~~~~~~vv~L~S~dc 129 (330)
T PF07034_consen 54 NSKLFDDLVDFIRNSHSSDESSARDWASQMNSREIPTALLLTGVNIPD----HDLLFEQLSERLQSSVGPYVVRLNSKDC 129 (330)
T ss_pred HHHHHHHHHHHHHhhcCccccccccccccccccccchHHHHhCCCCcc----HHHHHHHHHHHHHhCCCcEEEEEecccc
Confidence 355677777776665543221 2345444444333322 11222333333333 3667778899999
Q ss_pred cCHHHHHHHHHHHHHHHhcCCC
Q psy38 136 FQVENAFTAVTQEIYNRVQSGD 157 (193)
Q Consensus 136 ~~i~e~f~~i~~~i~~~~~~~~ 157 (193)
.++..++..|+.+++......+
T Consensus 130 ~~lk~~lk~iv~ql~~~~~~~~ 151 (330)
T PF07034_consen 130 SNLKSALKSIVRQLMSDKSDVD 151 (330)
T ss_pred hHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999988765554
No 463
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=30.58 E-value=1.1e+02 Score=21.98 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=25.9
Q ss_pred CCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEec
Q psy38 90 RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131 (193)
Q Consensus 90 ~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~S 131 (193)
..|++++|.-.-. .-..++..++++..+++++.+-
T Consensus 28 KRPvIivG~ga~~-------~~a~e~l~~laEklgiPVvtT~ 62 (162)
T TIGR00315 28 KRPLLIVGPENLE-------DEEKELIVKFIEKFDLPVVATA 62 (162)
T ss_pred CCcEEEECCCcCc-------ccHHHHHHHHHHHHCCCEEEcC
Confidence 5789899976531 2356778889999999998544
No 464
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=30.37 E-value=1.7e+02 Score=19.57 Aligned_cols=95 Identities=13% Similarity=0.106 Sum_probs=54.4
Q ss_pred EEEEeeCCCccccccchhhhccCccEEEEE-EeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38 34 KLQLWDTAGQERFRSITKSYYRNSVGALLV-YDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS 112 (193)
Q Consensus 34 ~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~ 112 (193)
-+.+.|.+...++ +++-..++-. +...+ +....+..++..+.+.. ..-+++.....+ ..++
T Consensus 27 ~v~v~e~~d~~~~-------l~~gElvlttg~~~~~-~~~~~~~~~i~~L~~~~----~agL~i~~~~~~------~~iP 88 (123)
T PF07905_consen 27 WVHVMEAPDPSDW-------LRGGELVLTTGYALRD-DDEEELREFIRELAEKG----AAGLGIKTGRYL------DEIP 88 (123)
T ss_pred EEEEeecCCHHHh-------CCCCeEEEECCcccCC-CCHHHHHHHHHHHHHCC----CeEEEEeccCcc------ccCC
Confidence 4667777644333 3433444432 22222 11224556666666643 344344444333 2344
Q ss_pred HHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 113 EAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
++..++|.++++|.+++.. .....++...+.++|
T Consensus 89 -~~~i~~A~~~~lPli~ip~--~~~f~~I~~~v~~~I 122 (123)
T PF07905_consen 89 -EEIIELADELGLPLIEIPW--EVPFSDITREVMRAI 122 (123)
T ss_pred -HHHHHHHHHcCCCEEEeCC--CCCHHHHHHHHHHHh
Confidence 5566999999999999887 567777777776654
No 465
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=29.76 E-value=4.3e+02 Score=24.34 Aligned_cols=105 Identities=18% Similarity=0.105 Sum_probs=56.1
Q ss_pred EEEEEeeCCCcccccc-c---hhhh--ccCccEEEEEEeCCC-hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCC
Q psy38 33 IKLQLWDTAGQERFRS-I---TKSY--YRNSVGALLVYDITS-RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQS 105 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~-~---~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 105 (193)
..+.|+||+|...... + .... ....+-.++|.|.+. .+.+.++... +...... ++-- +|.||.|-..
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~---f~~~~~~-~i~g-lIlTKLDEt~- 337 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHA---YRHGAGE-DVDG-CIITKLDEAT- 337 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHH---HhhcccC-CCCE-EEEeccCCCC-
Confidence 4688999999533221 1 1111 123456788888875 3444444222 2211100 1233 6799999533
Q ss_pred CCCCccCHHHHHHHHHhCCCcEEEecCCCCcCH-HHHHHHHHHHHHH
Q psy38 106 GVPREVSEAEAKAFASQNDILHFETSSRSGFQV-ENAFTAVTQEIYN 151 (193)
Q Consensus 106 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~e~f~~i~~~i~~ 151 (193)
..-.+..+....++++..++. |.+| +++...-.+.+.+
T Consensus 338 ------~~G~iL~i~~~~~lPI~yit~--GQ~VPdDL~~a~~~~lv~ 376 (767)
T PRK14723 338 ------HLGPALDTVIRHRLPVHYVST--GQKVPEHLELAQADELVD 376 (767)
T ss_pred ------CccHHHHHHHHHCCCeEEEec--CCCChhhcccCCHHHHHH
Confidence 444566777777887776554 5566 5554433333333
No 466
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=28.64 E-value=3.8e+02 Score=23.81 Aligned_cols=69 Identities=9% Similarity=0.043 Sum_probs=44.7
Q ss_pred HhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH-hCC-CcEEEec--CCCCcCHHHHHHHHHH
Q psy38 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS-QND-ILHFETS--SRSGFQVENAFTAVTQ 147 (193)
Q Consensus 72 ~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-~~~-~~~~~~S--a~~~~~i~e~f~~i~~ 147 (193)
+.++...++.+..+ ..|+++..|+..-.. .-..+..++++. ..| +.+..+. ++-|.|-.++-+.+++
T Consensus 423 ~~NL~~Hien~~~f----gvpvVVAIN~F~tDT-----~~Ei~~i~~~~~~~~ga~~~~~s~~~a~GG~Ga~eLA~~Vv~ 493 (625)
T PTZ00386 423 LSNLQRHIQNIRKF----GVPVVVALNKFSTDT-----DAELELVKELALQEGGAADVVVTDHWAKGGAGAVDLAQALIR 493 (625)
T ss_pred HHHHHHHHHHHHHc----CCCeEEEecCCCCCC-----HHHHHHHHHHHHHhcCCccEEEechhhccchhHHHHHHHHHH
Confidence 34455555555554 478889999976432 233455667888 778 4555443 5667788888888876
Q ss_pred HH
Q psy38 148 EI 149 (193)
Q Consensus 148 ~i 149 (193)
.+
T Consensus 494 a~ 495 (625)
T PTZ00386 494 VT 495 (625)
T ss_pred HH
Confidence 55
No 467
>KOG4271|consensus
Probab=28.55 E-value=69 Score=29.66 Aligned_cols=32 Identities=25% Similarity=0.205 Sum_probs=27.8
Q ss_pred CCcEEEecCCCCcCHHHHHHHHHHHHHHHhcC
Q psy38 124 DILHFETSSRSGFQVENAFTAVTQEIYNRVQS 155 (193)
Q Consensus 124 ~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~ 155 (193)
+++++|+|+..+.||+-+|..++..+.+.+..
T Consensus 3 ~l~~vetss~~nvnve~~f~tl~~l~~ksr~~ 34 (1100)
T KOG4271|consen 3 NLPVVETSSVKNVNVEYLFGTLVQLCDKSRKK 34 (1100)
T ss_pred CCCceeecccccccHHHHHHHHHHHHHhhccc
Confidence 57889999999999999999999988876544
No 468
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=27.64 E-value=3.2e+02 Score=21.88 Aligned_cols=95 Identities=7% Similarity=0.075 Sum_probs=48.7
Q ss_pred EEEEEeeCCCccccccchhhhcc--------CccEEEEEEeCCChhHHh-hHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYR--------NSVGALLVYDITSRASFE-HIPVWMMEAKRHIEPHRPVFALVGCKLDLL 103 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 103 (193)
...-+.++.|...-..+...++. ..+++|.++|+.+-.... .......++.. .-+ ||.||+|+.
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~------AD~-IvlnK~Dl~ 163 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADR-ILLTKTDVA 163 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh------CCE-EEEeccccC
Confidence 34466778887654333333322 248899999987532211 11112233332 234 889999986
Q ss_pred CCCCCCccCHHHHHHHHHhCC--CcEEEecCCCCcCHHHHH
Q psy38 104 QSGVPREVSEAEAKAFASQND--ILHFETSSRSGFQVENAF 142 (193)
Q Consensus 104 ~~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~e~f 142 (193)
.+ .+......+..+ ++++.++-- ......+|
T Consensus 164 ~~-------~~~~~~~l~~lnp~a~i~~~~~~-~v~~~~l~ 196 (318)
T PRK11537 164 GE-------AEKLRERLARINARAPVYTVVHG-DIDLSLLF 196 (318)
T ss_pred CH-------HHHHHHHHHHhCCCCEEEEeccC-CCCHHHHh
Confidence 51 134444444433 466654422 23444444
No 469
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=27.41 E-value=3.4e+02 Score=22.00 Aligned_cols=86 Identities=17% Similarity=0.076 Sum_probs=45.2
Q ss_pred ccEEEEEEeCCChhHHhh---HHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEe-c-
Q psy38 57 SVGALLVYDITSRASFEH---IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET-S- 131 (193)
Q Consensus 57 ~d~~i~v~d~~~~~s~~~---~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~-S- 131 (193)
++.+|++- ..+..++.. +.+.++.+.... .....+-+|.||.|... .+..+++..+++++-. .
T Consensus 173 ad~VIVVt-~pe~~si~~A~~v~kai~~~~~lg-~~~~i~GlViNr~d~~~----------~ie~~ae~lgi~vLg~IP~ 240 (329)
T cd02033 173 AQKVIVVG-SNDLQSLYVANNVCNAVEYFRKLG-GNVGVAGMVINKDDGTG----------EAQAFAAHAGIPILAAIPA 240 (329)
T ss_pred CceEEEeC-CchHHHHHHHHHHHHHHHHHHHhC-CCCCceEEEEeCcCCcc----------hHHHHHHHhCCCEEEECCC
Confidence 44444443 334555543 444555554432 12233558999998532 2344555555443321 0
Q ss_pred --------------CCCCcCHHHHHHHHHHHHHHHhc
Q psy38 132 --------------SRSGFQVENAFTAVTQEIYNRVQ 154 (193)
Q Consensus 132 --------------a~~~~~i~e~f~~i~~~i~~~~~ 154 (193)
...+..+.+.|..+.+.+.+..+
T Consensus 241 D~~V~~a~~~g~~~~~p~s~~a~~f~~LA~~I~~~~~ 277 (329)
T cd02033 241 DEELRRKSAAYQIVGRPGTTWGPLFEQLATNVAEAPP 277 (329)
T ss_pred CHHHHHHHHcCCeecCCCCHHHHHHHHHHHHHHHhcC
Confidence 11233577889999998887544
No 470
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=27.40 E-value=3e+02 Score=22.86 Aligned_cols=68 Identities=10% Similarity=0.068 Sum_probs=39.0
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHH-------HHHHhcCCCCCeE-EEEeeCCCC
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMM-------EAKRHIEPHRPVF-ALVGCKLDL 102 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~-------~i~~~~~~~~~pi-ilv~nK~Dl 102 (193)
.+.+.|+|+++.-.+ +....+.-+|.+|+....+ ..++..+...+. .+..........+ -++.|+.|-
T Consensus 251 ~yD~IiIDtpP~l~~--~t~~al~aAd~viiPv~p~-~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~ 326 (405)
T PRK13869 251 DYDVVVIDCPPQLGF--LTLSGLCAATSMVITVHPQ-MLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEP 326 (405)
T ss_pred cCCEEEEECCCchhH--HHHHHHHHcCEEEEecCCc-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECC
Confidence 467889999987654 3444566689999888654 344444444332 2322211111222 368898885
No 471
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=27.31 E-value=1.8e+02 Score=21.56 Aligned_cols=67 Identities=16% Similarity=0.046 Sum_probs=41.6
Q ss_pred EEEEEeeCCCcccc-ccchhhhccC--ccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38 33 IKLQLWDTAGQERF-RSITKSYYRN--SVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL 103 (193)
Q Consensus 33 ~~l~l~D~~g~~~~-~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 103 (193)
+.+.++|++..... ..+....+.+ ++.+++|...+ ..+..++...++.+.... . ...-+|.|+....
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~-~~s~~~~~~~l~~l~~~~-~--~~~glVlN~~~~~ 183 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPE-KLPLYETERAITELALYG-I--PVDAVVVNRVLPA 183 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCC-ccHHHHHHHHHHHHHHCC-C--CCCEEEEeCCcCc
Confidence 67889999864322 2223333443 47888888765 556777777777776543 2 2234788988753
No 472
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=27.17 E-value=1.6e+02 Score=20.94 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=27.4
Q ss_pred cCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38 55 RNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL 102 (193)
Q Consensus 55 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 102 (193)
..+|.+|+-|.=+ -+++..++..+.... +.+.+|+|||-|..-
T Consensus 68 ~~~D~vvly~PKa----K~e~~~lL~~l~~~L-~~g~~i~vVGEnk~G 110 (155)
T PF08468_consen 68 QDFDTVVLYWPKA----KAEAQYLLANLLSHL-PPGTEIFVVGENKGG 110 (155)
T ss_dssp TT-SEEEEE--SS----HHHHHHHHHHHHTTS--TT-EEEEEEEGGGT
T ss_pred cCCCEEEEEccCc----HHHHHHHHHHHHHhC-CCCCEEEEEecCccc
Confidence 4689999988654 445677777787765 446788899988653
No 473
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=26.55 E-value=1.8e+02 Score=24.70 Aligned_cols=38 Identities=24% Similarity=0.221 Sum_probs=24.5
Q ss_pred EEEEEeeCCCcccccc-chh-----hhccCccEEEEEEeCCChh
Q psy38 33 IKLQLWDTAGQERFRS-ITK-----SYYRNSVGALLVYDITSRA 70 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~ 70 (193)
+.+.|.||+|...... +.. .-.-+.|=+++|.|+.-.+
T Consensus 183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQ 226 (451)
T COG0541 183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQ 226 (451)
T ss_pred CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccch
Confidence 4688999999765433 111 1223567888999987543
No 474
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=26.26 E-value=62 Score=28.02 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=23.1
Q ss_pred CcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 125 ILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 125 ~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
.|+|..||.++.||.++++.+++.+-
T Consensus 250 ~PV~~GSA~~n~Gv~~LLd~i~~~~P 275 (527)
T TIGR00503 250 TPVFFGTALGNFGVDHFLDGLLQWAP 275 (527)
T ss_pred eEEEEeecccCccHHHHHHHHHHHCC
Confidence 48999999999999999999988664
No 475
>PF12989 DUF3873: Domain of unknown function, B. Theta Gene description (DUF3873); InterPro: IPR024356 This entry represents a family of uncharacterised proteins found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].
Probab=26.07 E-value=1.6e+02 Score=17.83 Aligned_cols=42 Identities=14% Similarity=0.266 Sum_probs=23.4
Q ss_pred EEEeeCCCccccccchhhh-ccCccEEEEEEeCCChhHHhhHH
Q psy38 35 LQLWDTAGQERFRSITKSY-YRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 35 l~l~D~~g~~~~~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+.+.-++|.++|....... .+..-.+-+=|-.++.+-|.-+.
T Consensus 9 ~S~c~~~G~E~Y~~f~~~~~~k~~~~~qYdYr~~~GeLFscV~ 51 (69)
T PF12989_consen 9 VSICQTPGEEKYEKFQLGIGRKGVTKYQYDYRHTDGELFSCVA 51 (69)
T ss_pred eeecCCCCceeeeeeeeccccccceEEEEeeecCCccchhhhh
Confidence 5577788888877654333 44444444445445544444433
No 476
>COG2452 Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair]
Probab=26.05 E-value=2.8e+02 Score=20.59 Aligned_cols=69 Identities=10% Similarity=0.056 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
+.++..+.........-.++|..| |... -.-.+-..++++.+|+.+..+...+..+ +|++..++..+-.
T Consensus 100 Rk~~~kll~li~~~~V~rVvV~yk-DRL~-----RFGfe~le~~~~a~~~eivvv~~~e~~~-eELveDlisIlts 168 (193)
T COG2452 100 RKGLLKLLKLVEGNSVRRVVVSYK-DRLN-----RFGFELVEAVCKAHNVEIVVVNQEDKDS-EELVEDLVSILTS 168 (193)
T ss_pred hhhHHHHHHHHcCCceeEEEEEcc-chHh-----HHhHHHHHHHHHhcCcEEEEecCCCCCH-HHHHHHHHHHHHH
Confidence 444444444444445566455555 5322 1336667778888999999888776666 8888888876543
No 477
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=25.97 E-value=3e+02 Score=21.00 Aligned_cols=99 Identities=9% Similarity=-0.014 Sum_probs=48.6
Q ss_pred ccCccEEEEEEeCCChhHHhh-HHHHH-HHHHHhcCC-CCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEe
Q psy38 54 YRNSVGALLVYDITSRASFEH-IPVWM-MEAKRHIEP-HRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130 (193)
Q Consensus 54 ~~~~d~~i~v~d~~~~~s~~~-~~~~~-~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (193)
+.+.+.+++|+=-+-...--. ...|- ..+...... .-.|| +-.|..-+.........+.++.......+|+..+++
T Consensus 76 ~d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpI-ld~Ng~~i~~pt~~~~~~~e~l~~~~~~yG~~~~~V 154 (227)
T cd02011 76 FDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPI-LHLNGYKISNPTILARISHEELEALFRGYGYEPYFV 154 (227)
T ss_pred hcCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEE-EEcCCCcccCCccccccCchhHHHHHHhCCCceEEE
Confidence 556677777774332211111 12342 112211122 23455 456665554422212233566667788889988887
Q ss_pred cCCCCcCHHHHHHHHHHHHHHHh
Q psy38 131 SSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 131 Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
.-.+-..+.+.+...++.+++..
T Consensus 155 DG~D~~av~~~~a~a~~~~~~~i 177 (227)
T cd02011 155 EGDDPETMHQAMAATLDWAIEEI 177 (227)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 54433345555555555555543
No 478
>PRK08187 pyruvate kinase; Validated
Probab=25.24 E-value=2.5e+02 Score=24.24 Aligned_cols=78 Identities=15% Similarity=-0.021 Sum_probs=50.3
Q ss_pred HhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 72 ~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
++.+..|-.+|...+.....|+ +++|.. |++-......+..+.-..+...|..++..| .|....+...++.+.+..
T Consensus 400 ~e~~p~~Qk~II~~craagkpv-I~ATQm-LESM~~~p~PTRAEvtDvAnadgaDavMLs--~G~ypveaV~~l~~I~~~ 475 (493)
T PRK08187 400 FERLAEMQEEILWLCEAAHVPV-IWATQV-LEGLVKKGLPSRAEMTDAAMAARAECVMLN--KGPYLVEAVTFLDDLLAR 475 (493)
T ss_pred cccChHHHHHHHHHHHHhCCCe-EEEchh-hHhhccCCCCchHHHHHHHhhcCCCEEeec--CCCCHHHHHHHHHHHHHH
Confidence 3333344455555555556776 666664 332222455677887777776788888888 788888998888876655
Q ss_pred Hh
Q psy38 152 RV 153 (193)
Q Consensus 152 ~~ 153 (193)
..
T Consensus 476 ~e 477 (493)
T PRK08187 476 MD 477 (493)
T ss_pred HH
Confidence 44
No 479
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=25.19 E-value=2.1e+02 Score=19.02 Aligned_cols=40 Identities=10% Similarity=-0.132 Sum_probs=25.8
Q ss_pred CccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEee
Q psy38 56 NSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGC 98 (193)
Q Consensus 56 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 98 (193)
++|++.+++ ++......+..++..+.+.. ...+++++-|+
T Consensus 50 ~~d~V~iS~--~~~~~~~~~~~~~~~L~~~~-~~~i~i~~GG~ 89 (122)
T cd02071 50 DVDVIGLSS--LSGGHMTLFPEVIELLRELG-AGDILVVGGGI 89 (122)
T ss_pred CCCEEEEcc--cchhhHHHHHHHHHHHHhcC-CCCCEEEEECC
Confidence 566666655 45566777888888888763 33567655444
No 480
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=25.02 E-value=3.2e+02 Score=21.03 Aligned_cols=53 Identities=9% Similarity=-0.023 Sum_probs=30.9
Q ss_pred EEEEEEeeCCCccccccc-hhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHh
Q psy38 32 RIKLQLWDTAGQERFRSI-TKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRH 85 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 85 (193)
.+.+.++||+|.-....+ ....+.-+|.+|++...+ +.++..+...++.+...
T Consensus 116 ~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~-~~si~~~~~ll~~i~~~ 169 (279)
T PRK13230 116 GPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCD-PMAIYAANNICKGIKRF 169 (279)
T ss_pred CCCEEEEecCCccccCCccccccccccceEEEeccch-HHHHHHHHHHHHHHHHH
Confidence 367789999764322111 122234479999888764 55666665555444433
No 481
>PRK13660 hypothetical protein; Provisional
Probab=24.72 E-value=1.7e+02 Score=21.53 Aligned_cols=16 Identities=44% Similarity=0.569 Sum_probs=8.6
Q ss_pred hhccCccEEEEEEeCC
Q psy38 52 SYYRNSVGALLVYDIT 67 (193)
Q Consensus 52 ~~~~~~d~~i~v~d~~ 67 (193)
..+.++|++|++||-.
T Consensus 125 fmv~~sd~~i~~YD~e 140 (182)
T PRK13660 125 FMLEHTDGALLVYDEE 140 (182)
T ss_pred HHHHccCeEEEEEcCC
Confidence 3344556666666544
No 482
>PF10036 RLL: Putative carnitine deficiency-associated protein; InterPro: IPR019265 This family of proteins conserved from nematodes to humans is of approximately 250 amino acids. It is purported to be carnitine deficiency-associated protein but this could not be confirmed. It carries a characteristic RLL sequence-motif. The function is unknown.
Probab=24.65 E-value=1.3e+02 Score=23.22 Aligned_cols=71 Identities=10% Similarity=0.090 Sum_probs=45.0
Q ss_pred eCCChhHHhhHHHHHHH--HHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHH
Q psy38 65 DITSRASFEHIPVWMME--AKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAF 142 (193)
Q Consensus 65 d~~~~~s~~~~~~~~~~--i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f 142 (193)
+.+++..|.++-.|+++ |..+...+.-+ |... .... =.+....+++..++++ ....-.+++
T Consensus 18 n~~d~~~fr~lVvWLEDqKIR~Y~iedR~~---------LR~i-~s~~-W~~~~~kYl~dl~cP~------~~~~~~~~l 80 (249)
T PF10036_consen 18 NIDDEEEFRSLVVWLEDQKIRHYKIEDREK---------LRNI-DSSD-WPKAFEKYLKDLGCPF------SSESRQEQL 80 (249)
T ss_pred CCCCHHHHHHHHHHHhhhhhccCCHhhHHH---------HhcC-Ccch-HHHHHHHHHHhcCCCC------cchhHHHHH
Confidence 56788999999999998 44332111111 1110 0011 2344557888899988 445678999
Q ss_pred HHHHHHHHHH
Q psy38 143 TAVTQEIYNR 152 (193)
Q Consensus 143 ~~i~~~i~~~ 152 (193)
+|++..++..
T Consensus 81 dWLL~~AV~l 90 (249)
T PF10036_consen 81 DWLLGLAVRL 90 (249)
T ss_pred HHHHHHHHHH
Confidence 9999988875
No 483
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=24.29 E-value=3.6e+02 Score=22.26 Aligned_cols=68 Identities=7% Similarity=0.016 Sum_probs=37.9
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH---HHHHHHhcC--CCCCeEEEEeeCCCC
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW---MMEAKRHIE--PHRPVFALVGCKLDL 102 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~---~~~i~~~~~--~~~~piilv~nK~Dl 102 (193)
.+.+.|+|+++.-.. +....+.-+|.+|+....+ ..++..+... +..+..... ..+..+-++.|+.|-
T Consensus 234 ~YD~IiIDtpP~l~~--~t~nal~AaD~viiP~~~~-~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~ 306 (388)
T PRK13705 234 DYDVIVIDSAPNLGI--GTINVVCAADVLIVPTPAE-LFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSN 306 (388)
T ss_pred cCCEEEEECCCchhH--HHHHHHHHcCEEEEecCCc-HHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecC
Confidence 367889999876442 3344555789999888653 4444444333 333333210 011223367888774
No 484
>PF07764 Omega_Repress: Omega Transcriptional Repressor; InterPro: IPR011686 The omega transcriptional repressor regulates expression of genes involved in copy number control and stable maintenance of plasmids. The omega protein belongs to the structural superfamily of MetJ/Arc repressors featuring a ribbon-helix-helix DNA-binding motif with the beta-ribbon located in and recognising the major groove of operator DNA [].; PDB: 2BNW_D 1IRQ_A 2CAX_B 2BNZ_A.
Probab=23.73 E-value=83 Score=18.54 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=18.2
Q ss_pred cCCCCcCHHHHHHHHHHHHHHHh
Q psy38 131 SSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 131 Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
+|++|-||.|+.+..++.-++..
T Consensus 44 tAknGgNvKEvme~~lr~~l~~~ 66 (71)
T PF07764_consen 44 TAKNGGNVKEVMEQALREKLKSV 66 (71)
T ss_dssp HHHSSS-HHHHHHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHHHh
Confidence 68999999999998888776654
No 485
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=23.66 E-value=1.3e+02 Score=21.22 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=31.4
Q ss_pred CccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCC
Q psy38 56 NSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKL 100 (193)
Q Consensus 56 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 100 (193)
.-+++|..-..+.+.|+.+-..|+.+.--... ..-++++|||.
T Consensus 83 ~y~vYivtaamdhp~s~~dK~eWl~E~FPFi~--~qn~vfCgnKn 125 (180)
T COG4502 83 IYNVYIVTAAMDHPKSCEDKGEWLKEKFPFIS--YQNIVFCGNKN 125 (180)
T ss_pred hheEEEEEeccCCchhHHHHHHHHHHHCCCCC--hhhEEEecCCC
Confidence 34777777776778999998999887665433 34567899985
No 486
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=23.63 E-value=2.6e+02 Score=19.37 Aligned_cols=69 Identities=10% Similarity=-0.049 Sum_probs=32.1
Q ss_pred CccEEEEEEeCCCh------hHH-hhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEE
Q psy38 56 NSVGALLVYDITSR------ASF-EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHF 128 (193)
Q Consensus 56 ~~d~~i~v~d~~~~------~s~-~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~ 128 (193)
+.|.+++.+-.+|. +.| ..+...++.+... ..++++++...--...........+..++++++.++.++
T Consensus 64 ~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~----~~~vil~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 139 (177)
T cd01822 64 KPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQAR----GAPVLLVGMQAPPNYGPRYTRRFAAIYPELAEEYGVPLV 139 (177)
T ss_pred CCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHC----CCeEEEEecCCCCccchHHHHHHHHHHHHHHHHcCCcEe
Confidence 67888888876652 112 2233344444432 456656553211100000001112344466777777666
No 487
>PF09827 CRISPR_Cas2: CRISPR associated protein Cas2; InterPro: IPR019199 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages. ; PDB: 3EXC_X 2I0X_A 3OQ2_B 3UI3_A 1ZPW_X 2I8E_A 2IVY_A.
Probab=23.35 E-value=91 Score=18.90 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=16.4
Q ss_pred EEEEEEeCCChhHHhhHHHHHHHHH
Q psy38 59 GALLVYDITSRASFEHIPVWMMEAK 83 (193)
Q Consensus 59 ~~i~v~d~~~~~s~~~~~~~~~~i~ 83 (193)
-++++||+++......+.+.+....
T Consensus 3 ~~lv~YDi~~~k~~~kv~k~L~~~g 27 (78)
T PF09827_consen 3 LYLVAYDISDNKRRNKVRKILKSYG 27 (78)
T ss_dssp EEEEEEEEHSHHHHHHHHHHHHHTT
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhC
Confidence 5789999987765555555444333
No 488
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=22.81 E-value=3.6e+02 Score=20.72 Aligned_cols=68 Identities=6% Similarity=-0.037 Sum_probs=37.3
Q ss_pred EEEEEEeeCCCccccccc-hhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEE-EEeeCC
Q psy38 32 RIKLQLWDTAGQERFRSI-TKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFA-LVGCKL 100 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~ 100 (193)
.+.+.++||+|.-....+ ....+.-+|.+|++... ++.++..+...++.+.......+..+. +|.|+.
T Consensus 117 ~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~-e~~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~ 186 (274)
T PRK13235 117 NLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSG-EMMAMYAANNICKGILKYADAGGVRLGGLICNSR 186 (274)
T ss_pred CCCEEEEECCCCCccCCcccccccccccEEEEEecC-chhHHHHHHHHHHHHHHHhhcCCCceeEEEEecC
Confidence 467889999764321111 11122357888888854 566777766655555443222234432 566764
No 489
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=22.59 E-value=2.1e+02 Score=17.87 Aligned_cols=39 Identities=5% Similarity=-0.089 Sum_probs=20.2
Q ss_pred ccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCC
Q psy38 57 SVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLD 101 (193)
Q Consensus 57 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 101 (193)
.|++++=++..+. +...++..+.... ...|++++.+..|
T Consensus 44 ~d~iiid~~~~~~----~~~~~~~~i~~~~--~~~~ii~~t~~~~ 82 (112)
T PF00072_consen 44 PDLIIIDLELPDG----DGLELLEQIRQIN--PSIPIIVVTDEDD 82 (112)
T ss_dssp ESEEEEESSSSSS----BHHHHHHHHHHHT--TTSEEEEEESSTS
T ss_pred ceEEEEEeeeccc----ccccccccccccc--ccccEEEecCCCC
Confidence 4555544444442 2334455555543 5678877765543
No 490
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=21.90 E-value=3.7e+02 Score=20.59 Aligned_cols=117 Identities=8% Similarity=0.003 Sum_probs=56.4
Q ss_pred EEEEEEeeCCCccccccchhhh-ccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEE-EEeeCCCCCCC----
Q psy38 32 RIKLQLWDTAGQERFRSITKSY-YRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFA-LVGCKLDLLQS---- 105 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~---- 105 (193)
.+.+.++|+.|.--...+.... -.-+|.+|++... ++.++..+...++.+.........+++ +|.|+..-...
T Consensus 118 ~yD~iliD~~~~~~~~al~~~~~~~aad~viIp~~p-~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~~~~~~~~~ 196 (275)
T PRK13233 118 DLDFVFFDVLGDVVCGGFAMPIRDGKAQEVYIVASG-EMMAIYAANNICKGLVKYAEQSGVRLGGIICNSRNVDGELELL 196 (275)
T ss_pred CCCEEEEecCCceeeccccccchhccCceEEEeccc-cHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCCCCCcHHHHH
Confidence 3667889996532111110000 0157888888876 455676666655544332222334433 67886431100
Q ss_pred ------C---CCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 106 ------G---VPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 106 ------~---~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
. ....++......-+...+.++++... +......|..+.+.+..
T Consensus 197 e~l~~~~~~~~l~~Ip~~~~v~~A~~~g~pv~~~~~--~s~~a~~y~~La~ell~ 249 (275)
T PRK13233 197 EEFTDAIGTQMIHFVPRDNIVQKAEFNKKTVVEFDP--DCNQAKEYKELARKIIE 249 (275)
T ss_pred HHHHHHcCCceeeecCcchHHHHHHHcCCCEEEECC--CCHHHHHHHHHHHHHHh
Confidence 0 00122333333344445555655432 22344567777777765
No 491
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=21.62 E-value=1.7e+02 Score=23.98 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=27.9
Q ss_pred CccEEEEEEeCCC--hhHHhhHHHHHHHHHHhcCCCCCeEEE-EeeCCCC
Q psy38 56 NSVGALLVYDITS--RASFEHIPVWMMEAKRHIEPHRPVFAL-VGCKLDL 102 (193)
Q Consensus 56 ~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~~piil-v~nK~Dl 102 (193)
++|++|+.-|+=+ ..+...+....+.+..... .++|+++ .||. |-
T Consensus 40 ~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~-~~Ipv~~I~GNH-D~ 87 (390)
T COG0420 40 KVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKD-AGIPVVVIAGNH-DS 87 (390)
T ss_pred cCCEEEEccccccCCCCCHHHHHHHHHHHHHhcc-CCCcEEEecCCC-Cc
Confidence 6799999888854 3455656666666665543 3455555 5555 54
No 492
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=21.51 E-value=2e+02 Score=20.83 Aligned_cols=36 Identities=22% Similarity=0.112 Sum_probs=25.5
Q ss_pred CCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEec
Q psy38 90 RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131 (193)
Q Consensus 90 ~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~S 131 (193)
..|++++|...-. . .-..+...++++..+++++.+-
T Consensus 35 KrPlIivG~ga~~-~-----~ea~e~l~elaEkl~iPVvtT~ 70 (171)
T PRK00945 35 KRPLLVVGSLLLD-D-----EELLDRAVKIAKKANIPVAATG 70 (171)
T ss_pred CCcEEEECcCccc-c-----chHHHHHHHHHHHHCCCEEEcc
Confidence 5789899977632 1 1245668889999999988543
No 493
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=21.49 E-value=2.5e+02 Score=18.51 Aligned_cols=42 Identities=7% Similarity=-0.111 Sum_probs=26.0
Q ss_pred CccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCC
Q psy38 56 NSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKL 100 (193)
Q Consensus 56 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 100 (193)
.+++..++++.+ .+..+.....+..+.... ..+|++++.++.
T Consensus 36 ~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~--~~iPVFl~~~~~ 77 (115)
T PF03709_consen 36 FTDIAAVVISWD-GEEEDEAQELLDKIRERN--FGIPVFLLAERD 77 (115)
T ss_dssp TTTEEEEEEECH-HHHHHHHHHHHHHHHHHS--TT-EEEEEESCC
T ss_pred CCCeeEEEEEcc-cccchhHHHHHHHHHHhC--CCCCEEEEecCC
Confidence 455555555544 555556677888888764 468997777654
No 494
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=21.20 E-value=1.8e+02 Score=23.25 Aligned_cols=47 Identities=13% Similarity=0.294 Sum_probs=26.0
Q ss_pred EEEEEEeeCCCccccc---cchhhh--------ccCccEEEEEEeCCChhHHhhHHHH
Q psy38 32 RIKLQLWDTAGQERFR---SITKSY--------YRNSVGALLVYDITSRASFEHIPVW 78 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~---~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~ 78 (193)
.+.+.+.-++.+..-. .....+ -...||+|+.-+.-+...|+++..|
T Consensus 64 qv~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGAp~e~~~fedv~YW 121 (302)
T PRK05368 64 QVDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGAPVEQLPFEDVDYW 121 (302)
T ss_pred eEEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcCCCCCCccCCCCchH
Confidence 4567777766643311 111222 2367999999887653345554444
No 495
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=21.05 E-value=2e+02 Score=21.11 Aligned_cols=60 Identities=12% Similarity=0.018 Sum_probs=35.5
Q ss_pred cEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecC
Q psy38 58 VGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132 (193)
Q Consensus 58 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa 132 (193)
..=+++++++...+...+..+++.+.+....+.+++ +||-. .++. ++++..|...+-.+|
T Consensus 135 ~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i-~vGG~----------~~~~----~~~~~~gad~~~~da 194 (197)
T TIGR02370 135 KPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKF-MVGGA----------PVTQ----DWADKIGADVYGENA 194 (197)
T ss_pred CCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEE-EEECh----------hcCH----HHHHHhCCcEEeCCh
Confidence 333445555555667778888888888654455676 55532 2322 366677776554443
No 496
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=20.69 E-value=3.9e+02 Score=20.43 Aligned_cols=50 Identities=12% Similarity=0.136 Sum_probs=29.8
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHH
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKR 84 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 84 (193)
+.+.|+|++...... -...+...+|++|+|.... ..+...+...+..+..
T Consensus 213 yD~ViiD~pp~~~~~-d~~~~~~~~d~vilV~~~~-~t~~~~~~~~~~~l~~ 262 (274)
T TIGR03029 213 YDVVIVDTPSAEHSS-DAQIVATRARGTLIVSRVN-ETRLHELTSLKEHLSG 262 (274)
T ss_pred CCEEEEeCCCccccc-HHHHHHHhCCeEEEEEECC-CCCHHHHHHHHHHHHh
Confidence 567788887543211 1334455678888887753 3456666666666654
No 497
>PRK13556 azoreductase; Provisional
Probab=20.44 E-value=1.8e+02 Score=21.44 Aligned_cols=34 Identities=3% Similarity=0.047 Sum_probs=22.6
Q ss_pred hhccCccEEEEEEeCCChhHHhhHHHHHHHHHHh
Q psy38 52 SYYRNSVGALLVYDITSRASFEHIPVWMMEAKRH 85 (193)
Q Consensus 52 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 85 (193)
.-++.+|++||.+.+-+-.--..+..|+..+...
T Consensus 85 ~~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~ 118 (208)
T PRK13556 85 NQFLEADKVVFAFPLWNFTIPAVLHTYIDYLNRA 118 (208)
T ss_pred HHHHHCCEEEEeccccccCCcHHHHHHHHHHhcC
Confidence 3466899999999886532222346677777754
No 498
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=20.35 E-value=3.8e+02 Score=20.75 Aligned_cols=49 Identities=10% Similarity=-0.021 Sum_probs=32.1
Q ss_pred hhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCC
Q psy38 51 KSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKL 100 (193)
Q Consensus 51 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 100 (193)
-.....+|.+|..|+.-+...-..+.+-++-+.++. .++.|+.+|-|--
T Consensus 149 l~aAA~adfVi~~YNP~s~~R~~~~~~a~eil~~~r-~~~tpVgivrnag 197 (249)
T COG1010 149 LRAAAEADFVIALYNPISKRRPEQLGRAFEILREHR-SPDTPVGIVRNAG 197 (249)
T ss_pred HHHHhhCCEEEEEECCccccchHHHHHHHHHHHHhc-CCCCcEEEEecCC
Confidence 344557899999998877554445555555566664 4578886665544
No 499
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=20.28 E-value=83 Score=19.89 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=18.4
Q ss_pred eCCCccccccchhhhccCccEEEEEEeCC
Q psy38 39 DTAGQERFRSITKSYYRNSVGALLVYDIT 67 (193)
Q Consensus 39 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 67 (193)
+..............+++++.+|++++.+
T Consensus 32 ~~~~g~~~~~~i~~~i~~s~~~i~~~S~~ 60 (102)
T PF13676_consen 32 DIPPGEDWREEIERAIERSDCVIVLLSPN 60 (102)
T ss_dssp EE-TTS-HHCCCHHCCTTEEEEEEEEEHH
T ss_pred eCCCCCCHHHHHHHHHHhCCEEEEEECcc
Confidence 33334444555666678899999999743
No 500
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=20.03 E-value=3.8e+02 Score=21.63 Aligned_cols=68 Identities=15% Similarity=0.086 Sum_probs=38.2
Q ss_pred CCcEEEEEEeeCCCcc---c----cccc-------h-hhh-ccCccEEEEEEeCCChh----HHhhHHHHHHHHHHhcCC
Q psy38 29 DGARIKLQLWDTAGQE---R----FRSI-------T-KSY-YRNSVGALLVYDITSRA----SFEHIPVWMMEAKRHIEP 88 (193)
Q Consensus 29 ~~~~~~l~l~D~~g~~---~----~~~~-------~-~~~-~~~~d~~i~v~d~~~~~----s~~~~~~~~~~i~~~~~~ 88 (193)
|...+-+.+||+...+ . |... . +.. -.++|.+-+.+..++++ +-+++...++.+.+.
T Consensus 46 n~p~ia~~v~D~~~~~~~~~i~~~~~~v~~~p~~~Ak~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~ea--- 122 (319)
T PRK04452 46 NPPVIAMEVFDMPPEDWPEAVKEPFGDVMNDPAAWAKKCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQA--- 122 (319)
T ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHh---
Confidence 4445778899986533 1 2221 0 111 33689999988777764 333344445555443
Q ss_pred CCCeEEEEeeC
Q psy38 89 HRPVFALVGCK 99 (193)
Q Consensus 89 ~~~piilv~nK 99 (193)
-+.|++|.++.
T Consensus 123 vd~PL~Id~s~ 133 (319)
T PRK04452 123 VDVPLIIGGSG 133 (319)
T ss_pred CCCCEEEecCC
Confidence 35788666553
Done!