Query psy38
Match_columns 193
No_of_seqs 132 out of 1389
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 17:46:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy38.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/38hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 3.8E-37 1.3E-41 230.6 14.1 146 2-152 27-177 (216)
2 3cpj_B GTP-binding protein YPT 100.0 4.6E-30 1.6E-34 192.7 13.7 153 3-160 28-185 (223)
3 2bcg_Y Protein YP2, GTP-bindin 100.0 4.7E-29 1.6E-33 184.8 17.0 148 3-155 23-175 (206)
4 3tkl_A RAS-related protein RAB 100.0 4.5E-28 1.5E-32 177.7 18.3 158 3-165 31-193 (196)
5 2bov_A RAla, RAS-related prote 100.0 1.2E-28 4.3E-33 182.0 14.8 146 3-153 29-179 (206)
6 2fu5_C RAS-related protein RAB 100.0 1.9E-28 6.5E-33 178.0 15.1 150 2-156 22-176 (183)
7 2hup_A RAS-related protein RAB 100.0 7.8E-28 2.7E-32 177.9 15.7 146 3-153 44-195 (201)
8 2ew1_A RAS-related protein RAB 100.0 1.1E-27 3.8E-32 177.3 16.2 149 3-156 41-194 (201)
9 1vg8_A RAS-related protein RAB 100.0 1.2E-27 4.1E-32 177.0 15.4 147 3-154 23-178 (207)
10 2a5j_A RAS-related protein RAB 100.0 2.3E-27 7.9E-32 173.7 16.1 150 2-156 35-189 (191)
11 3t5g_A GTP-binding protein RHE 100.0 2.4E-27 8.2E-32 171.9 15.8 146 3-153 21-171 (181)
12 2bme_A RAB4A, RAS-related prot 100.0 4.4E-27 1.5E-31 171.1 17.0 151 3-158 25-180 (186)
13 4dsu_A GTPase KRAS, isoform 2B 100.0 3.1E-27 1E-31 172.1 15.8 147 3-155 19-170 (189)
14 3cbq_A GTP-binding protein REM 100.0 2.4E-27 8.3E-32 174.6 15.2 146 2-151 37-188 (195)
15 3kkq_A RAS-related protein M-R 100.0 5.4E-27 1.8E-31 170.3 16.6 144 3-151 33-182 (183)
16 2o52_A RAS-related protein RAB 100.0 3.3E-27 1.1E-31 174.4 15.6 151 3-158 40-195 (200)
17 2gf9_A RAS-related protein RAB 100.0 1.2E-26 4E-31 169.6 17.6 147 3-154 37-188 (189)
18 2g3y_A GTP-binding protein GEM 99.9 2.5E-27 8.4E-32 176.7 13.3 148 2-153 51-205 (211)
19 1zbd_A Rabphilin-3A; G protein 99.9 1.2E-26 4.1E-31 171.3 16.8 149 3-156 23-176 (203)
20 1g16_A RAS-related protein SEC 99.9 1E-26 3.5E-31 166.4 15.5 145 3-153 18-167 (170)
21 3tw8_B RAS-related protein RAB 99.9 1.3E-26 4.3E-31 167.6 16.0 148 3-156 24-176 (181)
22 2fn4_A P23, RAS-related protei 99.9 1.3E-26 4.6E-31 167.4 16.0 147 3-154 24-175 (181)
23 2g6b_A RAS-related protein RAB 99.9 1.4E-26 4.8E-31 167.4 16.1 144 3-151 25-174 (180)
24 1z08_A RAS-related protein RAB 99.9 6.6E-27 2.3E-31 167.6 14.2 144 3-151 21-169 (170)
25 2nzj_A GTP-binding protein REM 99.9 1E-26 3.4E-31 167.4 15.1 149 2-154 18-172 (175)
26 1z0f_A RAB14, member RAS oncog 99.9 1.2E-26 4E-31 167.4 15.5 144 3-151 30-178 (179)
27 1x3s_A RAS-related protein RAB 99.9 1.8E-26 6.2E-31 168.9 16.6 146 3-153 30-180 (195)
28 3q85_A GTP-binding protein REM 99.9 8.4E-27 2.9E-31 167.0 14.4 146 3-152 17-168 (169)
29 3q3j_B RHO-related GTP-binding 99.9 5.9E-27 2E-31 174.9 14.0 148 3-154 42-206 (214)
30 3bc1_A RAS-related protein RAB 99.9 1.7E-26 5.7E-31 168.7 16.0 150 3-156 26-190 (195)
31 2hxs_A RAB-26, RAS-related pro 99.9 2.1E-27 7.3E-32 171.5 11.0 147 2-151 20-173 (178)
32 2efe_B Small GTP-binding prote 99.9 1.8E-26 6.2E-31 167.0 15.9 145 3-152 27-176 (181)
33 2oil_A CATX-8, RAS-related pro 99.9 2.5E-26 8.5E-31 168.3 16.8 147 3-154 40-191 (193)
34 3q72_A GTP-binding protein RAD 99.9 1.6E-26 5.5E-31 165.0 15.0 145 3-152 17-165 (166)
35 1z06_A RAS-related protein RAB 99.9 1.2E-26 4.1E-31 169.6 14.5 144 3-150 35-187 (189)
36 3oes_A GTPase rhebl1; small GT 99.9 5E-27 1.7E-31 173.3 12.6 148 3-155 39-191 (201)
37 3dz8_A RAS-related protein RAB 99.9 2.4E-27 8.4E-32 173.6 10.8 147 3-154 38-189 (191)
38 1ek0_A Protein (GTP-binding pr 99.9 1.6E-26 5.4E-31 165.3 14.7 145 3-149 18-167 (170)
39 2il1_A RAB12; G-protein, GDP, 99.9 1.3E-26 4.4E-31 170.1 14.4 145 3-152 41-191 (192)
40 3c5c_A RAS-like protein 12; GD 99.9 6.7E-27 2.3E-31 170.9 12.7 143 2-150 35-185 (187)
41 1z2a_A RAS-related protein RAB 99.9 1.3E-26 4.4E-31 165.6 13.8 143 3-151 20-167 (168)
42 3ihw_A Centg3; RAS, centaurin, 99.9 2.3E-26 7.8E-31 167.8 15.0 142 3-153 35-182 (184)
43 2f7s_A C25KG, RAS-related prot 99.9 3E-27 1E-31 176.4 10.4 150 3-156 40-204 (217)
44 2j0v_A RAC-like GTP-binding pr 99.9 4E-27 1.4E-31 175.1 10.9 147 3-153 24-182 (212)
45 1r2q_A RAS-related protein RAB 99.9 3.3E-26 1.1E-30 163.7 15.3 142 3-149 21-167 (170)
46 1wms_A RAB-9, RAB9, RAS-relate 99.9 5.3E-26 1.8E-30 164.0 16.4 144 3-151 22-174 (177)
47 1c1y_A RAS-related protein RAP 99.9 4.4E-26 1.5E-30 162.7 15.4 142 3-149 18-165 (167)
48 2fg5_A RAB-22B, RAS-related pr 99.9 2.6E-26 8.8E-31 168.4 14.3 145 2-151 37-186 (192)
49 2iwr_A Centaurin gamma 1; ANK 99.9 5.4E-26 1.8E-30 164.3 15.4 145 2-154 21-172 (178)
50 1z0j_A RAB-22, RAS-related pro 99.9 9.1E-26 3.1E-30 161.5 16.3 142 3-149 21-167 (170)
51 2yc2_C IFT27, small RAB-relate 99.9 3.5E-26 1.2E-30 168.9 14.5 151 2-155 34-196 (208)
52 3cph_A RAS-related protein SEC 99.9 1.3E-25 4.5E-30 166.6 17.6 148 3-156 35-187 (213)
53 2a9k_A RAS-related protein RAL 99.9 6.8E-26 2.3E-30 164.5 15.7 148 3-155 33-185 (187)
54 2gf0_A GTP-binding protein DI- 99.9 1.2E-26 4.1E-31 170.5 11.8 142 3-150 23-170 (199)
55 1u8z_A RAS-related protein RAL 99.9 4E-26 1.4E-30 162.8 13.5 144 3-151 19-167 (168)
56 2atv_A RERG, RAS-like estrogen 99.9 7.1E-26 2.4E-30 166.4 14.9 145 3-153 43-193 (196)
57 2cjw_A GTP-binding protein GEM 99.9 1E-25 3.4E-30 165.5 15.5 148 2-153 20-174 (192)
58 3clv_A RAB5 protein, putative; 99.9 2.3E-25 7.9E-30 163.7 17.5 143 3-153 22-206 (208)
59 1ky3_A GTP-binding protein YPT 99.9 8.9E-26 3E-30 163.2 14.9 149 3-153 23-180 (182)
60 2y8e_A RAB-protein 6, GH09086P 99.9 5.7E-26 1.9E-30 163.9 13.8 143 3-150 29-176 (179)
61 2p5s_A RAS and EF-hand domain 99.9 2.2E-26 7.5E-31 169.6 11.7 146 3-150 43-196 (199)
62 3reg_A RHO-like small GTPase; 99.9 1.3E-25 4.4E-30 164.7 15.5 145 3-152 38-189 (194)
63 2q3h_A RAS homolog gene family 99.9 1.2E-25 4.2E-30 165.6 15.4 148 3-154 35-198 (201)
64 1kao_A RAP2A; GTP-binding prot 99.9 6.4E-26 2.2E-30 161.6 13.4 144 3-151 18-166 (167)
65 2atx_A Small GTP binding prote 99.9 1.7E-25 5.8E-30 164.0 15.9 144 3-150 33-192 (194)
66 1m7b_A RND3/RHOE small GTP-bin 99.9 7.6E-26 2.6E-30 164.7 13.4 145 3-151 22-183 (184)
67 1gwn_A RHO-related GTP-binding 99.9 1.2E-25 4E-30 166.9 13.9 146 2-151 42-204 (205)
68 3t1o_A Gliding protein MGLA; G 99.9 2E-25 6.7E-30 163.5 12.9 137 12-156 53-197 (198)
69 3con_A GTPase NRAS; structural 99.9 1.1E-24 3.7E-29 159.1 16.6 145 3-153 36-185 (190)
70 2j1l_A RHO-related GTP-binding 99.9 3.6E-25 1.2E-29 165.1 13.8 147 3-153 49-211 (214)
71 1mh1_A RAC1; GTP-binding, GTPa 99.9 2.7E-25 9.4E-30 161.3 12.7 145 3-151 20-180 (186)
72 2ce2_X GTPase HRAS; signaling 99.9 1.4E-24 4.8E-29 154.3 15.3 142 3-150 18-164 (166)
73 2gco_A H9, RHO-related GTP-bin 99.9 1.2E-24 4.2E-29 160.5 15.4 145 3-151 40-200 (201)
74 4djt_A GTP-binding nuclear pro 99.9 2.1E-24 7.2E-29 161.0 16.1 147 3-153 26-177 (218)
75 3l0i_B RAS-related protein RAB 99.9 8.3E-27 2.8E-31 171.9 2.2 145 2-151 47-196 (199)
76 1r8s_A ADP-ribosylation factor 99.9 1.2E-25 4E-30 160.3 7.9 145 2-151 14-162 (164)
77 4bas_A ADP-ribosylation factor 99.9 5E-25 1.7E-29 161.8 11.5 147 2-153 31-191 (199)
78 2fv8_A H6, RHO-related GTP-bin 99.9 1.7E-24 5.7E-29 160.5 14.3 146 3-152 40-201 (207)
79 3gj0_A GTP-binding nuclear pro 99.9 5.6E-25 1.9E-29 164.6 11.2 144 2-153 29-177 (221)
80 4gzl_A RAS-related C3 botulinu 99.9 9.4E-25 3.2E-29 161.6 12.0 143 3-149 45-203 (204)
81 1upt_A ARL1, ADP-ribosylation 99.9 7.2E-25 2.5E-29 157.0 10.3 145 2-151 21-169 (171)
82 2erx_A GTP-binding protein DI- 99.9 1.9E-24 6.4E-29 154.7 12.3 142 3-149 18-165 (172)
83 3bwd_D RAC-like GTP-binding pr 99.9 1.5E-25 5E-30 162.3 6.5 144 3-150 23-180 (182)
84 1f6b_A SAR1; gtpases, N-termin 99.9 1.9E-24 6.5E-29 159.4 11.5 137 2-148 39-196 (198)
85 1fzq_A ADP-ribosylation factor 99.9 2E-25 6.9E-30 162.3 5.9 139 3-151 31-178 (181)
86 1m2o_B GTP-binding protein SAR 99.9 6.2E-24 2.1E-28 155.6 13.1 137 2-148 37-189 (190)
87 2b6h_A ADP-ribosylation factor 99.9 3.8E-25 1.3E-29 162.3 6.3 143 3-150 44-190 (192)
88 1zd9_A ADP-ribosylation factor 99.9 3.6E-25 1.2E-29 161.7 5.5 139 3-151 37-185 (188)
89 1ksh_A ARF-like protein 2; sma 99.9 2.3E-24 7.8E-29 156.8 9.4 140 3-152 33-181 (186)
90 2x77_A ADP-ribosylation factor 99.9 1.8E-24 6.1E-29 157.9 8.1 144 3-151 37-184 (189)
91 1zj6_A ADP-ribosylation factor 99.9 2.2E-24 7.4E-29 157.3 7.7 139 3-151 31-178 (187)
92 2h57_A ADP-ribosylation factor 99.9 4.6E-23 1.6E-27 150.6 14.6 139 3-151 36-187 (190)
93 2f9l_A RAB11B, member RAS onco 99.9 1.7E-22 5.9E-27 148.8 17.4 149 3-156 20-173 (199)
94 2h17_A ADP-ribosylation factor 99.9 1.8E-24 6E-29 157.1 6.0 137 2-148 35-180 (181)
95 2wkq_A NPH1-1, RAS-related C3 99.9 4.3E-23 1.5E-27 162.8 14.3 145 3-151 170-330 (332)
96 1moz_A ARL1, ADP-ribosylation 99.9 5.3E-24 1.8E-28 154.3 7.6 140 3-152 33-181 (183)
97 2zej_A Dardarin, leucine-rich 99.9 5.6E-24 1.9E-28 154.9 6.2 145 3-152 17-179 (184)
98 3th5_A RAS-related C3 botulinu 99.8 6.1E-25 2.1E-29 162.4 0.0 145 2-150 44-204 (204)
99 3llu_A RAS-related GTP-binding 99.9 1.2E-23 3.9E-28 154.7 5.1 144 3-149 35-195 (196)
100 1oix_A RAS-related protein RAB 99.9 1.5E-21 5.2E-26 142.9 16.0 142 3-149 44-190 (191)
101 1cip_A Protein (guanine nucleo 99.9 1.3E-22 4.3E-27 161.7 10.5 135 14-153 179-346 (353)
102 2xtz_A Guanine nucleotide-bind 99.9 6.9E-23 2.4E-27 163.1 8.8 145 9-154 147-348 (354)
103 3r7w_B Gtpase2, GTP-binding pr 99.9 1.6E-23 5.5E-28 164.2 4.3 145 2-155 13-178 (331)
104 3c5h_A Glucocorticoid receptor 99.9 1.4E-23 4.9E-28 160.6 2.3 142 3-150 43-254 (255)
105 1azs_C GS-alpha; complex (lyas 99.9 4.2E-22 1.4E-26 160.5 10.6 141 9-154 187-388 (402)
106 3o47_A ADP-ribosylation factor 99.9 7.7E-23 2.6E-27 161.9 5.6 145 2-151 179-327 (329)
107 3lvq_E ARF-GAP with SH3 domain 99.9 2.1E-22 7.1E-27 167.5 8.1 142 2-153 336-486 (497)
108 3ohm_A Guanine nucleotide-bind 99.9 1.6E-22 5.6E-27 159.0 7.1 138 12-154 151-321 (327)
109 1zcb_A G alpha I/13; GTP-bindi 99.9 1.4E-21 4.8E-26 156.1 10.4 141 9-154 171-356 (362)
110 1u0l_A Probable GTPase ENGC; p 99.9 2.9E-21 1E-25 151.1 10.8 129 3-147 32-169 (301)
111 2fh5_B SR-beta, signal recogni 99.8 1.4E-21 4.7E-26 145.3 7.2 143 2-148 21-213 (214)
112 3r7w_A Gtpase1, GTP-binding pr 99.8 1.2E-20 4.1E-25 148.0 9.9 143 3-151 18-181 (307)
113 4fid_A G protein alpha subunit 99.8 2.1E-21 7.1E-26 153.3 5.4 135 12-151 145-328 (340)
114 2wji_A Ferrous iron transport 99.8 2.1E-20 7.1E-25 133.6 7.2 133 3-149 18-163 (165)
115 2lkc_A Translation initiation 99.8 1.2E-19 4.2E-24 130.6 10.7 134 3-153 23-173 (178)
116 2qu8_A Putative nucleolar GTP- 99.8 1.4E-18 4.6E-23 130.5 13.3 127 19-154 65-208 (228)
117 3dpu_A RAB family protein; roc 99.8 1.7E-19 5.7E-24 151.3 8.2 142 3-152 56-209 (535)
118 2cxx_A Probable GTP-binding pr 99.8 1.5E-19 5E-24 131.4 4.6 139 2-153 15-186 (190)
119 2wjg_A FEOB, ferrous iron tran 99.8 5.5E-19 1.9E-23 128.4 6.7 135 3-151 22-169 (188)
120 2dyk_A GTP-binding protein; GT 99.8 5E-19 1.7E-23 125.2 5.9 131 3-149 16-160 (161)
121 2gj8_A MNME, tRNA modification 99.8 6.1E-19 2.1E-23 127.0 5.5 132 3-149 19-164 (172)
122 1svi_A GTP-binding protein YSX 99.8 1.5E-18 5.1E-23 126.7 7.6 135 3-149 38-193 (195)
123 3pqc_A Probable GTP-binding pr 99.7 1.2E-17 3.9E-22 121.7 8.6 137 2-150 37-193 (195)
124 3a1s_A Iron(II) transport prot 99.7 2.2E-17 7.4E-22 126.4 8.3 134 3-150 20-166 (258)
125 3iev_A GTP-binding protein ERA 99.7 3.8E-17 1.3E-21 128.1 9.4 112 32-150 58-181 (308)
126 3iby_A Ferrous iron transport 99.7 8.5E-18 2.9E-22 128.5 3.8 132 3-148 16-164 (256)
127 3b1v_A Ferrous iron uptake tra 99.7 1.6E-17 5.6E-22 128.0 4.6 118 19-149 37-162 (272)
128 3gee_A MNME, tRNA modification 99.7 2.7E-16 9.3E-21 129.7 11.8 136 3-150 248-397 (476)
129 4dcu_A GTP-binding protein ENG 99.7 4.9E-17 1.7E-21 133.9 7.3 140 3-153 210-371 (456)
130 1nrj_B SR-beta, signal recogni 99.7 7.1E-18 2.4E-22 125.4 1.0 104 31-137 53-170 (218)
131 3qq5_A Small GTP-binding prote 99.6 1.8E-16 6E-21 129.0 7.5 135 2-150 48-195 (423)
132 2hjg_A GTP-binding protein ENG 99.6 1.3E-16 4.3E-21 130.7 6.6 139 3-152 190-350 (436)
133 3i8s_A Ferrous iron transport 99.6 4.9E-17 1.7E-21 125.5 3.4 133 3-149 18-167 (274)
134 4dhe_A Probable GTP-binding pr 99.6 1.3E-16 4.3E-21 119.0 5.0 142 3-152 44-212 (223)
135 3k53_A Ferrous iron transport 99.6 3.4E-16 1.2E-20 120.5 7.0 136 3-151 18-166 (271)
136 1xzp_A Probable tRNA modificat 99.6 2.7E-15 9.3E-20 123.9 11.1 133 2-151 257-405 (482)
137 2e87_A Hypothetical protein PH 99.6 6.2E-15 2.1E-19 117.8 12.8 113 33-152 214-337 (357)
138 1lnz_A SPO0B-associated GTP-bi 99.6 1.5E-15 5E-20 120.5 7.9 119 24-151 199-330 (342)
139 1mky_A Probable GTP-binding pr 99.6 4.3E-15 1.5E-19 121.8 9.6 134 3-151 16-166 (439)
140 1wf3_A GTP-binding protein; GT 99.6 5.6E-15 1.9E-19 115.4 8.5 108 31-149 53-171 (301)
141 1s0u_A EIF-2-gamma, translatio 99.6 1.6E-14 5.3E-19 117.4 11.4 109 33-149 81-196 (408)
142 3cb4_D GTP-binding protein LEP 99.6 3.4E-14 1.2E-18 120.0 12.9 112 29-150 67-181 (599)
143 2ywe_A GTP-binding protein LEP 99.5 5.7E-14 1.9E-18 118.5 13.4 112 29-150 69-183 (600)
144 2yv5_A YJEQ protein; hydrolase 99.5 2.1E-14 7E-19 112.2 9.5 110 30-146 47-164 (302)
145 3geh_A MNME, tRNA modification 99.5 3.8E-15 1.3E-19 122.5 4.8 132 3-151 239-384 (462)
146 3izy_P Translation initiation 99.5 4.4E-16 1.5E-20 129.8 -1.0 139 2-149 18-166 (537)
147 2hjg_A GTP-binding protein ENG 99.5 2.6E-15 8.9E-20 122.9 2.7 134 3-150 18-164 (436)
148 3sjy_A Translation initiation 99.5 5.4E-14 1.9E-18 114.0 10.4 111 33-149 75-190 (403)
149 1kk1_A EIF2gamma; initiation o 99.5 5.9E-14 2E-18 114.0 9.9 109 33-149 83-198 (410)
150 2qag_A Septin-2, protein NEDD5 99.5 2.6E-15 8.8E-20 120.1 1.4 132 14-155 77-237 (361)
151 3l82_B F-box only protein 4; T 99.5 7E-15 2.4E-19 107.6 2.6 109 40-150 109-222 (227)
152 1wb1_A Translation elongation 99.5 1.8E-13 6.2E-18 113.3 10.1 127 12-150 55-188 (482)
153 3j2k_7 ERF3, eukaryotic polype 99.5 1.3E-13 4.4E-18 112.9 8.7 127 11-143 76-217 (439)
154 3p26_A Elongation factor 1 alp 99.5 1.4E-13 4.7E-18 114.1 8.5 107 30-141 108-228 (483)
155 2elf_A Protein translation elo 99.5 1.1E-13 3.7E-18 111.0 7.6 133 3-151 36-180 (370)
156 2xtp_A GTPase IMAP family memb 99.5 1.9E-13 6.3E-18 104.4 8.2 142 3-152 37-209 (260)
157 1zo1_I IF2, translation initia 99.4 6.1E-15 2.1E-19 122.0 -1.3 137 2-147 18-163 (501)
158 1jny_A EF-1-alpha, elongation 99.4 4.7E-14 1.6E-18 115.5 3.9 112 31-143 82-205 (435)
159 1mky_A Probable GTP-binding pr 99.4 5.4E-13 1.8E-17 109.3 10.1 139 3-152 195-356 (439)
160 2c78_A Elongation factor TU-A; 99.4 9.2E-14 3.2E-18 112.7 5.0 107 23-137 66-180 (405)
161 2qtf_A Protein HFLX, GTP-bindi 99.4 1.1E-12 3.8E-17 104.9 10.9 128 19-154 215-357 (364)
162 2ged_A SR-beta, signal recogni 99.4 6.9E-14 2.4E-18 101.7 3.4 74 31-104 89-170 (193)
163 3tr5_A RF-3, peptide chain rel 99.4 5.8E-13 2E-17 111.2 9.0 69 31-104 80-148 (528)
164 1d2e_A Elongation factor TU (E 99.4 2.4E-13 8.4E-18 110.0 6.6 114 29-149 62-193 (397)
165 3t5d_A Septin-7; GTP-binding p 99.4 7.6E-14 2.6E-18 107.5 3.4 126 13-148 46-201 (274)
166 4dcu_A GTP-binding protein ENG 99.4 8.5E-14 2.9E-18 114.6 3.6 133 3-149 38-183 (456)
167 1ega_A Protein (GTP-binding pr 99.4 2E-12 6.7E-17 101.0 11.0 109 32-149 55-173 (301)
168 3avx_A Elongation factor TS, e 99.4 3.3E-13 1.1E-17 119.9 6.4 128 15-148 342-483 (1289)
169 1r5b_A Eukaryotic peptide chai 99.4 2.8E-13 9.7E-18 111.7 5.4 117 23-143 114-244 (467)
170 1g7s_A Translation initiation 99.4 6.1E-12 2.1E-16 106.3 13.6 110 34-151 71-218 (594)
171 1zun_B Sulfate adenylate trans 99.4 1.5E-12 5.3E-17 106.4 9.5 110 31-144 102-217 (434)
172 3l2o_B F-box only protein 4; s 99.4 1.2E-13 4.2E-18 105.7 2.3 109 40-150 194-307 (312)
173 3lxx_A GTPase IMAP family memb 99.4 1.7E-12 5.7E-17 97.9 8.0 141 3-151 44-214 (239)
174 3izq_1 HBS1P, elongation facto 99.3 8.8E-13 3E-17 111.9 3.5 118 19-142 234-363 (611)
175 1f60_A Elongation factor EEF1A 99.3 7.8E-13 2.7E-17 108.8 3.0 108 31-141 83-202 (458)
176 3lxw_A GTPase IMAP family memb 99.3 6.5E-12 2.2E-16 95.3 6.3 128 20-152 60-209 (247)
177 3mca_A HBS1, elongation factor 99.2 3.8E-13 1.3E-17 113.8 -2.8 122 12-139 237-371 (592)
178 2dy1_A Elongation factor G; tr 99.2 3.8E-11 1.3E-15 103.0 9.2 69 30-103 71-139 (665)
179 2h5e_A Peptide chain release f 99.2 7.9E-11 2.7E-15 98.4 9.6 69 31-104 80-148 (529)
180 1pui_A ENGB, probable GTP-bind 99.2 6.6E-11 2.2E-15 87.0 8.0 135 3-149 41-197 (210)
181 2aka_B Dynamin-1; fusion prote 99.2 2.3E-11 7.9E-16 94.3 5.2 111 33-150 125-252 (299)
182 1udx_A The GTP-binding protein 99.1 1.7E-10 5.7E-15 93.6 9.3 122 24-153 198-327 (416)
183 3h2y_A GTPase family protein; 99.1 3.8E-10 1.3E-14 90.3 8.7 96 42-148 55-157 (368)
184 1dar_A EF-G, elongation factor 99.1 4.3E-10 1.5E-14 96.8 9.5 68 32-104 76-143 (691)
185 2qnr_A Septin-2, protein NEDD5 99.1 5.8E-11 2E-15 92.6 3.6 116 29-153 72-216 (301)
186 2rdo_7 EF-G, elongation factor 99.0 2.3E-09 8E-14 92.4 12.6 70 30-104 79-148 (704)
187 3def_A T7I23.11 protein; chlor 99.0 7E-10 2.4E-14 84.7 8.3 82 19-104 73-165 (262)
188 3t34_A Dynamin-related protein 99.0 3.4E-10 1.2E-14 90.3 5.0 112 33-150 136-260 (360)
189 2hf9_A Probable hydrogenase ni 99.0 3E-12 1E-16 95.4 -6.7 58 91-151 165-224 (226)
190 2j69_A Bacterial dynamin-like 99.0 8.4E-10 2.9E-14 95.1 7.1 111 34-151 175-325 (695)
191 2xex_A Elongation factor G; GT 99.0 5.8E-09 2E-13 89.8 12.0 68 32-104 74-141 (693)
192 3ec1_A YQEH GTPase; atnos1, at 98.9 1E-09 3.6E-14 87.8 6.0 97 41-148 56-159 (369)
193 2qag_C Septin-7; cell cycle, c 98.9 9.7E-10 3.3E-14 89.2 4.3 126 14-148 70-224 (418)
194 1h65_A Chloroplast outer envel 98.9 2.1E-09 7.3E-14 82.4 5.9 73 31-104 85-168 (270)
195 1yrb_A ATP(GTP)binding protein 98.9 3.7E-09 1.3E-13 80.3 7.1 109 33-150 109-256 (262)
196 1jwy_B Dynamin A GTPase domain 98.9 4.3E-09 1.5E-13 82.2 7.0 111 33-150 131-261 (315)
197 3p32_A Probable GTPase RV1496/ 98.8 2.1E-09 7E-14 85.7 4.8 104 33-152 172-285 (355)
198 2wsm_A Hydrogenase expression/ 98.8 5.9E-09 2E-13 77.1 6.2 104 33-152 109-215 (221)
199 1n0u_A EF-2, elongation factor 98.8 1.3E-08 4.5E-13 89.4 8.0 70 29-103 94-163 (842)
200 3vqt_A RF-3, peptide chain rel 98.7 3.3E-08 1.1E-12 82.9 8.7 69 31-104 98-166 (548)
201 1puj_A YLQF, conserved hypothe 98.6 8.8E-08 3E-12 73.9 7.9 100 39-152 5-107 (282)
202 1wxq_A GTP-binding protein; st 98.6 2.3E-08 8E-13 80.7 3.6 48 91-143 215-262 (397)
203 2x2e_A Dynamin-1; nitration, h 98.6 9E-09 3.1E-13 81.9 0.8 109 33-148 130-255 (353)
204 2p67_A LAO/AO transport system 98.5 2E-07 7E-12 73.7 6.6 103 33-150 149-260 (341)
205 1jal_A YCHF protein; nucleotid 98.5 1.4E-06 4.7E-11 69.4 10.4 99 33-134 66-240 (363)
206 3j25_A Tetracycline resistance 98.4 9.6E-08 3.3E-12 81.6 3.4 71 29-104 63-133 (638)
207 2www_A Methylmalonic aciduria 98.4 1.3E-06 4.6E-11 69.2 9.7 102 33-150 167-278 (349)
208 2qpt_A EH domain-containing pr 98.2 4.2E-07 1.4E-11 76.3 3.2 67 34-104 155-232 (550)
209 4fn5_A EF-G 1, elongation fact 98.2 1E-05 3.5E-10 69.9 11.8 69 31-104 83-151 (709)
210 3cnl_A YLQF, putative uncharac 98.1 2.5E-06 8.4E-11 65.1 4.5 90 41-147 5-97 (262)
211 2dby_A GTP-binding protein; GD 98.1 9.8E-06 3.4E-10 64.7 7.7 54 91-144 202-255 (368)
212 1t9h_A YLOQ, probable GTPase E 98.1 2.1E-06 7.3E-11 66.8 3.4 91 47-144 77-170 (307)
213 3zvr_A Dynamin-1; hydrolase, D 98.0 1.6E-06 5.4E-11 75.1 2.8 108 34-148 151-275 (772)
214 2qm8_A GTPase/ATPase; G protei 98.0 1.4E-05 4.9E-10 63.0 7.8 103 33-150 148-260 (337)
215 2rcn_A Probable GTPase ENGC; Y 97.8 0.00015 5.2E-09 57.5 10.6 86 53-145 127-213 (358)
216 4a9a_A Ribosome-interacting GT 97.2 0.0041 1.4E-07 49.6 11.3 103 18-125 107-222 (376)
217 2ohf_A Protein OLA1, GTP-bindi 96.9 0.00032 1.1E-08 56.3 1.9 39 33-71 86-131 (396)
218 2j37_W Signal recognition part 96.0 0.006 2E-07 50.6 4.4 102 32-148 183-310 (504)
219 1ni3_A YCHF GTPase, YCHF GTP-b 95.0 0.2 6.8E-06 40.1 9.8 43 91-134 225-269 (392)
220 3dm5_A SRP54, signal recogniti 93.8 0.23 8E-06 40.4 7.8 91 33-139 183-279 (443)
221 1j8m_F SRP54, signal recogniti 93.1 0.37 1.3E-05 36.9 7.7 92 33-140 181-280 (297)
222 4dzz_A Plasmid partitioning pr 93.1 0.23 8E-06 35.2 6.1 66 33-102 76-142 (206)
223 3cwq_A Para family chromosome 91.3 1.5 5E-05 31.5 8.6 65 33-103 68-133 (209)
224 3end_A Light-independent proto 89.8 4.4 0.00015 30.6 10.6 85 32-128 156-241 (307)
225 3kl4_A SRP54, signal recogniti 88.7 1.2 4E-05 36.2 6.7 90 33-138 180-277 (433)
226 3pg5_A Uncharacterized protein 85.2 5.6 0.00019 31.1 8.8 42 120-161 307-357 (361)
227 2v3c_C SRP54, signal recogniti 85.0 8.5 0.00029 31.1 9.9 84 33-130 181-271 (432)
228 3ea0_A ATPase, para family; al 83.0 11 0.00037 27.1 10.2 87 32-130 118-204 (245)
229 1hyq_A MIND, cell division inh 80.0 13 0.00044 27.2 8.7 83 33-128 111-193 (263)
230 1wcv_1 SOJ, segregation protei 77.3 14 0.00048 27.0 8.2 67 32-102 111-181 (257)
231 3kjh_A CO dehydrogenase/acetyl 76.8 9.5 0.00033 27.4 7.1 64 32-101 131-194 (254)
232 3ec1_A YQEH GTPase; atnos1, at 75.9 0.28 9.7E-06 38.8 -1.6 91 35-134 214-314 (369)
233 2ph1_A Nucleotide-binding prot 75.0 6.3 0.00021 29.1 5.7 93 32-129 128-224 (262)
234 1g3q_A MIND ATPase, cell divis 75.0 10 0.00035 27.1 6.8 67 32-104 111-177 (237)
235 1cp2_A CP2, nitrogenase iron p 73.6 24 0.00081 25.8 10.2 88 33-128 116-205 (269)
236 1tq4_A IIGP1, interferon-induc 73.5 29 0.00098 27.8 9.5 107 34-149 121-251 (413)
237 3k9g_A PF-32 protein; ssgcid, 73.5 12 0.00042 27.4 7.0 64 33-101 145-208 (267)
238 3h2y_A GTPase family protein; 72.5 0.37 1.3E-05 38.1 -1.8 65 35-104 213-287 (368)
239 3q9l_A Septum site-determining 67.0 9.2 0.00032 27.8 5.0 68 32-102 113-185 (260)
240 2qag_B Septin-6, protein NEDD5 66.5 8.8 0.0003 31.0 5.1 16 89-104 175-190 (427)
241 2afh_E Nitrogenase iron protei 65.2 39 0.0013 25.0 9.9 89 32-128 118-208 (289)
242 2xj4_A MIPZ; replication, cell 63.3 28 0.00097 25.9 7.2 33 33-67 104-136 (286)
243 2xxa_A Signal recognition part 54.1 70 0.0024 25.7 8.3 65 33-104 184-254 (433)
244 1ko7_A HPR kinase/phosphatase; 53.4 13 0.00044 28.7 3.7 50 89-148 79-128 (314)
245 3e70_C DPA, signal recognition 53.2 28 0.00095 26.9 5.7 90 35-140 214-309 (328)
246 3bfv_A CAPA1, CAPB2, membrane 52.5 27 0.00094 25.9 5.4 65 33-103 192-257 (271)
247 2ffh_A Protein (FFH); SRP54, s 51.7 72 0.0025 25.6 8.0 86 33-132 181-272 (425)
248 3ez9_A Para; DNA binding, wing 49.6 59 0.002 25.5 7.2 68 32-101 247-321 (403)
249 2oze_A ORF delta'; para, walke 49.3 34 0.0012 25.4 5.6 68 32-103 154-225 (298)
250 4a9a_A Ribosome-interacting GT 47.7 43 0.0015 26.4 6.1 49 90-148 249-297 (376)
251 3szr_A Interferon-induced GTP- 44.1 34 0.0012 28.8 5.2 67 34-104 148-228 (608)
252 3sop_A Neuronal-specific septi 41.5 62 0.0021 24.0 5.9 43 56-104 111-154 (270)
253 1bif_A 6-phosphofructo-2-kinas 39.7 22 0.00076 28.7 3.3 51 34-85 88-148 (469)
254 3u7r_A NADPH-dependent FMN red 37.7 26 0.00089 24.7 3.1 71 51-125 62-135 (190)
255 3la6_A Tyrosine-protein kinase 36.5 1.2E+02 0.004 22.6 6.8 67 33-104 202-268 (286)
256 3do6_A Formate--tetrahydrofola 33.6 86 0.0029 25.9 5.7 69 72-149 346-416 (543)
257 3cio_A ETK, tyrosine-protein k 33.5 85 0.0029 23.5 5.6 66 33-103 214-279 (299)
258 3ezx_A MMCP 1, monomethylamine 33.2 84 0.0029 22.5 5.2 41 56-97 143-183 (215)
259 1ls1_A Signal recognition part 32.7 1.5E+02 0.0053 22.1 7.7 87 33-133 181-273 (295)
260 2ark_A Flavodoxin; FMN, struct 26.9 1.5E+02 0.0052 20.1 6.0 63 33-101 35-99 (188)
261 1vma_A Cell division protein F 26.1 2.1E+02 0.0073 21.5 7.3 88 33-134 187-286 (306)
262 3cf4_G Acetyl-COA decarboxylas 26.0 38 0.0013 23.1 2.3 34 90-130 35-68 (170)
263 2yhs_A FTSY, cell division pro 25.8 82 0.0028 26.0 4.5 92 33-140 376-479 (503)
264 1zu4_A FTSY; GTPase, signal re 25.7 2.2E+02 0.0075 21.6 8.0 92 33-140 192-295 (320)
265 1xrs_B D-lysine 5,6-aminomutas 24.9 2.1E+02 0.0073 21.2 9.3 100 35-152 158-259 (262)
266 3uhf_A Glutamate racemase; str 24.9 1.3E+02 0.0046 22.4 5.2 79 16-97 9-93 (274)
267 3pzx_A Formate--tetrahydrofola 23.8 61 0.0021 26.9 3.3 70 72-150 360-429 (557)
268 2pd2_A Hypothetical protein ST 22.8 1.4E+02 0.0047 18.2 5.4 65 63-131 4-68 (108)
269 3uc9_A Increased recombination 22.0 43 0.0015 24.6 1.9 80 57-147 103-195 (233)
270 3ez2_A Plasmid partition prote 21.9 1.4E+02 0.0049 23.1 5.2 34 32-67 244-277 (398)
271 5nul_A Flavodoxin; electron tr 21.4 1.5E+02 0.005 18.8 4.4 66 53-126 42-109 (138)
272 1byi_A Dethiobiotin synthase; 21.2 2.1E+02 0.0071 19.7 8.5 86 33-128 109-200 (224)
273 3hyn_A Putative signal transdu 21.1 1.1E+02 0.0038 21.6 3.8 49 47-99 70-118 (189)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=3.8e-37 Score=230.57 Aligned_cols=146 Identities=34% Similarity=0.605 Sum_probs=124.7
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||++|| .+.|.||+|.++..+.+.+ ++..+.++||||+|+++|..+++.|+++++++++|||+++++||+.+.
T Consensus 27 TsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~-~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~ 105 (216)
T 4dkx_A 27 TSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT 105 (216)
T ss_dssp HHHHHHHHHSCCC----------CEEEEEEC-SSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred HHHHHHHHhCCCCCCcCCccceEEEEEEEEe-cceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHH
Confidence 4788887 6789999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
.|+..+..... .++|++|||||+|+.+ .+.++.+++.++++++++.|++|||++|.||+++|.+|++.+...
T Consensus 106 ~~~~~i~~~~~-~~~piilVgNK~Dl~~---~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 106 KWIDDVRTERG-SDVIIMLVGNKTDLAD---KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 177 (216)
T ss_dssp HHHHHHHHHHT-TSSEEEEEEECTTCGG---GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC---
T ss_pred HHHHHHHHhcC-CCCeEEEEeeccchHh---cCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence 99999988764 4689999999999977 578999999999999999999999999999999999999987654
No 2
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.6e-30 Score=192.72 Aligned_cols=153 Identities=40% Similarity=0.684 Sum_probs=124.0
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||+|.++....+.+ ++..+.+.+|||+|+++|..++..+++++|++|+|||++++.+|+.+..
T Consensus 28 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~ 106 (223)
T 3cpj_B 28 NLLSRFTKNEFNMDSKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNH 106 (223)
T ss_dssp HHHHHHHHCCCCC------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHH
Confidence 577777 4578899999999999998 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCCC
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGD 157 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~~ 157 (193)
|+..+.... ....|+++|+||+|+.. .+.+..+++..++...+++++++||+++.||+++|.+|++.+.+.....+
T Consensus 107 ~l~~i~~~~-~~~~piilv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~ 182 (223)
T 3cpj_B 107 WLSELRENA-DDNVAVGLIGNKSDLAH---LRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQ 182 (223)
T ss_dssp HHHHHHHHC-C--CEEEEEECCGGGGG---GCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTCC----
T ss_pred HHHHHHHhC-CCCCeEEEEEECccccc---ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 999998764 45689999999999975 35678888999999999999999999999999999999999988776665
Q ss_pred ccc
Q psy38 158 YKV 160 (193)
Q Consensus 158 ~~~ 160 (193)
...
T Consensus 183 ~~~ 185 (223)
T 3cpj_B 183 MDL 185 (223)
T ss_dssp ---
T ss_pred cCc
Confidence 554
No 3
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.97 E-value=4.7e-29 Score=184.76 Aligned_cols=148 Identities=41% Similarity=0.643 Sum_probs=133.2
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+..
T Consensus 23 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~ 101 (206)
T 2bcg_Y 23 CLLLRFSDDTYTNDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKM 101 (206)
T ss_dssp HHHHHHHHCCCCTTCCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHH
Confidence 677776 5678899999999999998 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcC
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQS 155 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~ 155 (193)
|+..+.... ....|+++|+||+|+.. .+.+..+++..++...+++++++||++|.||+++|.+|.+.+.+....
T Consensus 102 ~~~~i~~~~-~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~ 175 (206)
T 2bcg_Y 102 WLQEIDRYA-TSTVLKLLVGNKCDLKD---KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQ 175 (206)
T ss_dssp HHHHHHHHS-CTTCEEEEEEECTTCTT---TCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHhc-CCCCCEEEEEECCCCcc---ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 999998765 44689999999999976 366788899999999999999999999999999999999999876543
No 4
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.96 E-value=4.5e-28 Score=177.71 Aligned_cols=158 Identities=39% Similarity=0.600 Sum_probs=133.8
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+.+..
T Consensus 31 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 109 (196)
T 3tkl_A 31 CLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ 109 (196)
T ss_dssp HHHHHHHHSCCCSCCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred HHHHHHHcCCCCCCCCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHH
Confidence 567776 5678899999999999999 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCCC
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGD 157 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~~ 157 (193)
|+..+.... ....|+++|+||+|+.. .+.+...++..++...+++++++||++|.|++++|.+|++.+........
T Consensus 110 ~~~~i~~~~-~~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~~~ 185 (196)
T 3tkl_A 110 WLQEIDRYA-SENVNKLLVGNKCDLTT---KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGA 185 (196)
T ss_dssp HHHHHHHHS-CTTCEEEEEEECTTCTT---TCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHhc-CCCCCEEEEEECccccc---ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHhcccc
Confidence 999998875 45689999999999976 47788899999999999999999999999999999999999998876655
Q ss_pred ccccCCcc
Q psy38 158 YKVEDGWE 165 (193)
Q Consensus 158 ~~~~~~~~ 165 (193)
......++
T Consensus 186 ~~~~~~~s 193 (196)
T 3tkl_A 186 TAGGAEKS 193 (196)
T ss_dssp --------
T ss_pred ccCCCccC
Confidence 44433333
No 5
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=182.03 Aligned_cols=146 Identities=32% Similarity=0.459 Sum_probs=129.3
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...|.||++..+ ...+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|..+..
T Consensus 29 sli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 106 (206)
T 2bov_A 29 ALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD 106 (206)
T ss_dssp HHHHHHHHSCCCTTCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCccceEE-EEEEEE-CCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHH
Confidence 566776 567889987544 566677 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
|+..+.........|+++|+||+|+.. .+.+..+++.+++...+++++++||++|.|++++|.+|++.+....
T Consensus 107 ~~~~i~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 179 (206)
T 2bov_A 107 FREQILRVKEDENVPFLLVGNKSDLED---KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 179 (206)
T ss_dssp HHHHHHHHTTCSCCCEEEEEECTTCGG---GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCccc---cccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHcc
Confidence 999999886656789999999999976 3568888999999999999999999999999999999999998764
No 6
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.96 E-value=1.9e-28 Score=177.99 Aligned_cols=150 Identities=38% Similarity=0.668 Sum_probs=114.7
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+++| ...+.||++.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+.
T Consensus 22 ssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 100 (183)
T 2fu5_C 22 TCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIR 100 (183)
T ss_dssp --------------CHHHHHCEEEEEEEEEE-TTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHH
Confidence 4788888 4567899999999888988 888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG 156 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~ 156 (193)
.|+..+.... ....|+++|+||+|+.+ .+.+..+++.+++...+++++++||++|.||+++|.+|++.+.++..+.
T Consensus 101 ~~~~~i~~~~-~~~~piilv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~~~ 176 (183)
T 2fu5_C 101 NWIRNIEEHA-SADVEKMILGNKCDVND---KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKN 176 (183)
T ss_dssp HHHHHHHHHS-CTTCEEEEEEEC--CCS---CCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCCCEEEEEECccCCc---cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 9999998764 34689999999999976 3668889999999999999999999999999999999999998876544
No 7
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.96 E-value=7.8e-28 Score=177.89 Aligned_cols=146 Identities=44% Similarity=0.698 Sum_probs=123.7
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+..
T Consensus 44 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~ 122 (201)
T 2hup_A 44 CVVQRFKTGAFSERQGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPH 122 (201)
T ss_dssp HHHHHHHHSCC----------CEEEEEEEE-TTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHH
T ss_pred HHHHHHhhCCCCCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHH
Confidence 567777 4678899999999999998 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
|+..+.... ....|+++|+||+|+.. .+.+..+++.+++...++ +++++||++|.||+++|.+|++.+.+..
T Consensus 123 ~~~~i~~~~-~~~~piilv~NK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 123 WIEDVRKYA-GSNIVQLLIGNKSDLSE---LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp HHHHHHHHS-CTTCEEEEEEECTTCGG---GCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhc-CCCCCEEEEEECCcccc---ccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 999998875 45689999999999976 356888999999999999 9999999999999999999999988754
No 8
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.1e-27 Score=177.28 Aligned_cols=149 Identities=38% Similarity=0.672 Sum_probs=132.7
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+..
T Consensus 41 sLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~ 119 (201)
T 2ew1_A 41 CLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE 119 (201)
T ss_dssp HHHHHHHHSSCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHH
T ss_pred HHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence 567776 5678899999999999999 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG 156 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~ 156 (193)
|+..+.... ....|+++|+||+|+.+ .+.+..+++..++...+++++++||++|.||+++|.++++.+.+.....
T Consensus 120 ~~~~i~~~~-~~~~piilv~NK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~~ 194 (201)
T 2ew1_A 120 WLREIEQYA-SNKVITVLVGNKIDLAE---RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQN 194 (201)
T ss_dssp HHHHHHHHS-CTTCEEEEEEECGGGGG---GCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhc-CCCCCEEEEEECCCCcc---ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 999998764 45689999999999965 3668888899999989999999999999999999999999998866443
No 9
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.95 E-value=1.2e-27 Score=177.00 Aligned_cols=147 Identities=33% Similarity=0.602 Sum_probs=129.8
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||+|.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|..+..
T Consensus 23 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 101 (207)
T 1vg8_A 23 SLMNQYVNKKFSNQYKATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS 101 (207)
T ss_dssp HHHHHHHHSCCCSSCCCCCSEEEEEEEEES-SSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHH
T ss_pred HHHHHHHcCCCCCCCCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHH
Confidence 567776 5678899999999999988 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC---CCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH-hCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 78 WMMEAKRHIEP---HRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS-QNDILHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 78 ~~~~i~~~~~~---~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
|+..+...... ...|+++|+||+|+.. +.+..+++..++. ..+++++++||++|.|++++|.+|++.+.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 102 WRDEFLIQASPRDPENFPFVVLGNKIDLEN----RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177 (207)
T ss_dssp HHHHHHHHHCCSSGGGSCEEEEEECTTSSC----CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccCCCCcEEEEEECCCCcc----cccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 99999876532 3679999999999974 4567788888887 67789999999999999999999999998765
Q ss_pred c
Q psy38 154 Q 154 (193)
Q Consensus 154 ~ 154 (193)
.
T Consensus 178 ~ 178 (207)
T 1vg8_A 178 T 178 (207)
T ss_dssp H
T ss_pred c
Confidence 4
No 10
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.95 E-value=2.3e-27 Score=173.74 Aligned_cols=150 Identities=47% Similarity=0.831 Sum_probs=129.8
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+++| ...+.||+|.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+.
T Consensus 35 Ssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 113 (191)
T 2a5j_A 35 SCLLLQFTDKRFQPVHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLT 113 (191)
T ss_dssp HHHHHHHHHSCCCC-----CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred HHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 3677777 4567889998999999998 888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG 156 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~ 156 (193)
.|+..+.... ....|+++|+||+|+.+ .+.+..+++..++...+++++++||+++.||+++|.+|++.+.++...+
T Consensus 114 ~~l~~i~~~~-~~~~piilv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~ 189 (191)
T 2a5j_A 114 SWLEDARQHS-SSNMVIMLIGNKSDLES---RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQG 189 (191)
T ss_dssp HHHHHHHHHS-CTTCEEEEEEECTTCGG---GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhc-CCCCCEEEEEECcccCC---ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999998764 45689999999999965 3568888999999999999999999999999999999999998876544
No 11
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.95 E-value=2.4e-27 Score=171.86 Aligned_cols=146 Identities=30% Similarity=0.398 Sum_probs=128.5
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++..+ ...+.+ ++..+.+.+|||+|++.+..++..+++++|++++|||++++++|+.+..
T Consensus 21 sli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 98 (181)
T 3t5g_A 21 SLTIQFVEGQFVDSYDPTIENTF-TKLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKV 98 (181)
T ss_dssp HHHHHHHHSSCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCccccE-EEEEEE-CCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence 566666 678899998666 677778 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
|+..+.........|+++|+||+|+.. .+.+..+++..++...+++++++||++|.|++++|.++++.+....
T Consensus 99 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 99 IHGKLLDMVGKVQIPIMLVGNKKDLHM---ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp HHHHHHHHC----CCEEEEEECTTCTT---TCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHhcCCCCCCEEEEEECccchh---cceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 999998876666789999999999976 4778999999999999999999999999999999999999887654
No 12
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.95 E-value=4.4e-27 Score=171.08 Aligned_cols=151 Identities=44% Similarity=0.740 Sum_probs=134.8
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..
T Consensus 25 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 103 (186)
T 2bme_A 25 CLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN 103 (186)
T ss_dssp HHHHHHHHSSCCTTCCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHH
T ss_pred HHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHH
Confidence 567776 5678899999999999998 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCCC
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGD 157 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~~ 157 (193)
|+..+.... ....|+++|+||+|+.. .+.+...++.+++...+++++++||++|.|++++|.++++.+.+.....+
T Consensus 104 ~~~~~~~~~-~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~ 179 (186)
T 2bme_A 104 WLTDARMLA-SQNIVIILCGNKKDLDA---DREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGE 179 (186)
T ss_dssp HHHHHHHHS-CTTCEEEEEEECGGGGG---GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhc-CCCCcEEEEEECccccc---ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhhhcC
Confidence 999988764 35689999999999965 35678888999999999999999999999999999999999998876664
Q ss_pred c
Q psy38 158 Y 158 (193)
Q Consensus 158 ~ 158 (193)
.
T Consensus 180 ~ 180 (186)
T 2bme_A 180 L 180 (186)
T ss_dssp -
T ss_pred C
Confidence 3
No 13
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.95 E-value=3.1e-27 Score=172.07 Aligned_cols=147 Identities=31% Similarity=0.465 Sum_probs=127.9
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++ +.....+.+ ++..+.+.+|||+|++.+..++..+++++|++++|||++++.+|+.+..
T Consensus 19 sli~~l~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 96 (189)
T 4dsu_A 19 ALTIQLIQNHFVDEYDPTIE-DSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH 96 (189)
T ss_dssp HHHHHHHHSSCCCCCCTTCC-EEEEEEEEE-TTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCch-heEEEEEEE-CCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence 566776 567888885 666677777 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcC
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQS 155 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~ 155 (193)
|+..+.........|+++|+||+|+.. +.+..+.+..++...+++++++||++|.|++++|.++++.+......
T Consensus 97 ~~~~~~~~~~~~~~p~i~v~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 170 (189)
T 4dsu_A 97 YREQIKRVKDSEDVPMVLVGNKCDLPS----RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170 (189)
T ss_dssp HHHHHHHHTTCSCCCEEEEEECTTSSS----CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcEEEEEECccCcc----cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhhhh
Confidence 999999877667789999999999975 56788889999999999999999999999999999999999876543
No 14
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.95 E-value=2.4e-27 Score=174.56 Aligned_cols=146 Identities=24% Similarity=0.316 Sum_probs=127.5
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcccccc-chhhhccCccEEEEEEeCCChhHHhhH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRS-ITKSYYRNSVGALLVYDITSRASFEHI 75 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~ 75 (193)
+||+++| ...+.|+++.++....+.+ ++..+.+.+|||+|++.+.. ++..+++++|++|+|||++++.+|..+
T Consensus 37 SsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~ 115 (195)
T 3cbq_A 37 STLAGTFGGLQGDSAHEPENPEDTYERRIMV-DKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKV 115 (195)
T ss_dssp HHHHHHTCCEECCGGGTTTSCTTEEEEEEEE-TTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTH
T ss_pred HHHHHHHHhccCCccCCCCcccceEEEEEEE-CCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHH
Confidence 3677887 2235577777888888888 99999999999999988765 778899999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
..|+..+.........|+++||||+|+.. .+.++.+++.+++...+++++++||++|.||+++|.++++.+..
T Consensus 116 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~---~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 116 PETLLRLRAGRPHHDLPVILVGNKSDLAR---SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp HHHHHHHHHHSTTSCCCEEEEEECTTCTT---TCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCCEEEEeechhccc---cCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 99999998875445789999999999976 46688889999999999999999999999999999999998764
No 15
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.95 E-value=5.4e-27 Score=170.29 Aligned_cols=144 Identities=29% Similarity=0.468 Sum_probs=129.9
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++..+ ...+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+.+..
T Consensus 33 sl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 110 (183)
T 3kkq_A 33 ALTIQFFQKIFVDDYDPTIEDSY-LKHTEI-DNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDR 110 (183)
T ss_dssp HHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHH
T ss_pred HHHHHHHhCCCCCCCCCCcccee-EEEEEe-CCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence 566776 668889998666 677777 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCC-CCcCHHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR-SGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~e~f~~i~~~i~~ 151 (193)
|+..+.........|+++|+||+|+.+ .+.+..+++.+++...+++++++||+ ++.|++++|.+|.+.+.+
T Consensus 111 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 111 FHQLILRVKDRESFPMILVANKVDLMH---LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHTSSCCCEEEEEECTTCST---TCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcEEEEEECCCchh---ccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 999998876667789999999999976 47789999999999999999999999 999999999999998764
No 16
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.95 E-value=3.3e-27 Score=174.36 Aligned_cols=151 Identities=46% Similarity=0.746 Sum_probs=128.0
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..
T Consensus 40 sLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 118 (200)
T 2o52_A 40 CLLHQFIENKFKQDSNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAA 118 (200)
T ss_dssp HHHHHHHC------------CCEEEEEEEE-TTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred HHHHHHHhCCCCccCCCcccceeEEEEEEE-CCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHH
Confidence 567776 5678899999999999998 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCCC
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGD 157 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~~ 157 (193)
|+..+.... ....|+++|+||+|+.. .+.+...++..++...+++++++||++|.||+++|.+|++.+.++....+
T Consensus 119 ~~~~~~~~~-~~~~piilv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~~ 194 (200)
T 2o52_A 119 WLTDARTLA-SPNIVVILCGNKKDLDP---EREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGE 194 (200)
T ss_dssp HHHHHHHHT-CTTCEEEEEEECGGGGG---GCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhc-CCCCcEEEEEECCCccc---ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 999998765 35689999999999965 35678888999999999999999999999999999999999998876664
Q ss_pred c
Q psy38 158 Y 158 (193)
Q Consensus 158 ~ 158 (193)
.
T Consensus 195 ~ 195 (200)
T 2o52_A 195 L 195 (200)
T ss_dssp S
T ss_pred C
Confidence 3
No 17
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.95 E-value=1.2e-26 Score=169.61 Aligned_cols=147 Identities=35% Similarity=0.601 Sum_probs=131.6
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||+|.++....+.. ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..
T Consensus 37 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 115 (189)
T 2gf9_A 37 SFLFRYADDSFTPAFVSTVGIDFKVKTVYR-HDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQD 115 (189)
T ss_dssp HHHHHHHHSCCCCSCCCCCCCEEEEEEEEE-TTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHH
T ss_pred HHHHHHHcCCCCCCcCCceeEEEEEEEEEE-CCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHH
Confidence 567776 4678899999998888888 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~ 154 (193)
|+..+.... ....|+++|+||+|+.. .+.+..+++.+++...+++++++||++|.|++++|.+|++.+.++.+
T Consensus 116 ~~~~i~~~~-~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 188 (189)
T 2gf9_A 116 WATQIKTYS-WDNAQVILVGNKCDLED---ERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMN 188 (189)
T ss_dssp HHHHHHHHS-CTTCEEEEEEECTTCGG---GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhc-CCCCCEEEEEECccccc---ccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 999998764 45689999999999966 36678888999999999999999999999999999999999887653
No 18
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2.5e-27 Score=176.72 Aligned_cols=148 Identities=27% Similarity=0.335 Sum_probs=123.5
Q ss_pred eeeeeecc------CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccc-cccchhhhccCccEEEEEEeCCChhHHhh
Q psy38 2 VTLLYLYI------QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQER-FRSITKSYYRNSVGALLVYDITSRASFEH 74 (193)
Q Consensus 2 ~sll~r~~------~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 74 (193)
+||++||. ....+++|.++..+.+.+ +|..+.+.+|||+|++. +..+...+++.++++|+|||++++.+|+.
T Consensus 51 SSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~ 129 (211)
T 2g3y_A 51 STLANIFAGVHDSMDSDCEVLGEDTYERTLMV-DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEK 129 (211)
T ss_dssp HHHHHHHHCCCCTTCCC---CCTTEEEEEEEE-TTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcCCccceeeEEEEEEE-CCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHH
Confidence 36788882 123355778888888888 99999999999999877 55567888999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 75 ~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
+..|+..+.........|++|||||+||.. .+.+..+++..++...++++++|||++|.||+++|.++++.+....
T Consensus 130 ~~~~~~~l~~~~~~~~~piilVgNK~DL~~---~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 130 ASELRIQLRRARQTEDIPIILVGNKSDLVR---CREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR 205 (211)
T ss_dssp HHHHHHHHHTSGGGTTSCEEEEEECTTCGG---GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEEChHHhc---CceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 999998887643344689999999999965 3668888888899889999999999999999999999999886544
No 19
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.95 E-value=1.2e-26 Score=171.27 Aligned_cols=149 Identities=34% Similarity=0.586 Sum_probs=133.9
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||+|.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+..
T Consensus 23 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 101 (203)
T 1zbd_A 23 SFLFRYADDSFTPAFVSTVGIDFKVKTIYR-NDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQD 101 (203)
T ss_dssp HHHHHHHTCCCCSCCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCcCCccceeEEEEEEEE-CCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHH
Confidence 677777 4678899999999888888 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG 156 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~ 156 (193)
|+..+.... ....|+++|+||+|+.. .+.+..+++.+++...+++++++||++|.|++++|.+|++.+.++....
T Consensus 102 ~~~~i~~~~-~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~ 176 (203)
T 1zbd_A 102 WSTQIKTYS-WDNAQVLLVGNKCDMED---ERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSES 176 (203)
T ss_dssp HHHHHHHHS-CSSCEEEEEEECTTCTT---SCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhc-CCCCCEEEEEECcccCc---ccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999998764 45689999999999976 4667888999999999999999999999999999999999998876554
No 20
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.95 E-value=1e-26 Score=166.43 Aligned_cols=145 Identities=36% Similarity=0.628 Sum_probs=123.7
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..
T Consensus 18 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 96 (170)
T 1g16_A 18 CLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQ 96 (170)
T ss_dssp HHHHHHHHCCCCC-------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHH
T ss_pred HHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 567776 4678899999999899988 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
|+..+.... ....|+++|+||+|+.. +.+..+++.++++..+++++++||++|.|++++|.++.+.+.++.
T Consensus 97 ~~~~i~~~~-~~~~piilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 167 (170)
T 1g16_A 97 WFKTVNEHA-NDEAQLLLVGNKSDMET----RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167 (170)
T ss_dssp HHHHHHHHS-CTTCEEEEEEECTTCTT----CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhc-CCCCcEEEEEECccCCc----CccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 999998875 34689999999999943 567888899999999999999999999999999999999887653
No 21
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=167.58 Aligned_cols=148 Identities=39% Similarity=0.623 Sum_probs=132.1
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.++..+..
T Consensus 24 sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 102 (181)
T 3tw8_B 24 SLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR 102 (181)
T ss_dssp HHHHHHCSCC---CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 567776 5578899999999999999 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG 156 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~ 156 (193)
|+..+.... ...|+++|+||+|+.. .+.+...++..++...+++++++||++|.|++++|.++.+.+.......
T Consensus 103 ~~~~~~~~~--~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 103 WLHEINQNC--DDVCRILVGNKNDDPE---RKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDN 176 (181)
T ss_dssp HHHHHHHHC--TTSEEEEEEECTTCGG---GCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCCCEEEEEECCCCch---hcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 999998764 3689999999999876 4668888999999999999999999999999999999999998876543
No 22
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.95 E-value=1.3e-26 Score=167.43 Aligned_cols=147 Identities=29% Similarity=0.491 Sum_probs=129.8
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++.++. ..+.+ ++..+.+.+|||+|++++..++..+++++|++++|||++++.++..+..
T Consensus 24 sli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 101 (181)
T 2fn4_A 24 ALTIQFIQSYFVSDYDPTIEDSYT-KICSV-DGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGK 101 (181)
T ss_dssp HHHHHHHHSSCCSSCCTTCCEEEE-EEEEE-TTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHHhCcCccccCCCcCceEE-EEEEE-CCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHH
Confidence 566776 5678899986665 66777 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~ 154 (193)
|+..+.........|+++|+||+|+.. .+.+..+++..++...+++++++||++|.|++++|.+|.+.+.+...
T Consensus 102 ~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 102 LFTQILRVKDRDDFPVVLVGNKADLES---QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp HHHHHHHHHTSSCCCEEEEEECGGGGG---GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCCCEEEEEECccccc---ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 999997766566789999999999976 36688889999999999999999999999999999999999876543
No 23
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.4e-26 Score=167.42 Aligned_cols=144 Identities=39% Similarity=0.709 Sum_probs=121.8
Q ss_pred eeeeec------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 3 TLLYLY------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 3 sll~r~------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
||+++| ...+.||++.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+.
T Consensus 25 sli~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 103 (180)
T 2g6b_A 25 CLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQ 103 (180)
T ss_dssp HHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHH
T ss_pred HHHHHHHhCCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHH
Confidence 567776 3467899999999888888 888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
.|+..+..... ...|+++|+||+|+.. .+.+..+++..++...+++++++||+++.|++++|.++.+.+.+
T Consensus 104 ~~~~~i~~~~~-~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 104 AWLTEIHEYAQ-HDVALMLLGNKVDSAH---ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp HHHHHHHHHSC-TTCEEEEEEECCSTTS---CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCC-CCCcEEEEEECcccCc---ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999988753 5689999999999976 46678888999999999999999999999999999999998764
No 24
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.95 E-value=6.6e-27 Score=167.56 Aligned_cols=144 Identities=34% Similarity=0.639 Sum_probs=122.3
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+..
T Consensus 21 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 99 (170)
T 1z08_A 21 SLVLRYCENKFNDKHITTLGASFLTKKLNI-GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN 99 (170)
T ss_dssp HHHHHHHHCCCCSSCCCCCSCEEEEEEEES-SSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCCCCccceEEEEEEEEE-CCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHH
Confidence 567666 4678899999999889988 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
|+..+.... ....|+++|+||+|+.+ .+.+..+++.+++...+++++++||++|.|++++|.++++.+.+
T Consensus 100 ~~~~~~~~~-~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 100 WVKELRKML-GNEICLCIVGNKIDLEK---ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHH-GGGSEEEEEEECGGGGG---GCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred HHHHHHHhc-CCCCeEEEEEECccccc---ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHhh
Confidence 999988764 34589999999999976 35678889999999999999999999999999999999988753
No 25
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.95 E-value=1e-26 Score=167.37 Aligned_cols=149 Identities=28% Similarity=0.343 Sum_probs=119.8
Q ss_pred eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccc--cccchhhhccCccEEEEEEeCCChhHHhhH
Q psy38 2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQER--FRSITKSYYRNSVGALLVYDITSRASFEHI 75 (193)
Q Consensus 2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~--~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 75 (193)
+||+++| .....++.|.++....+.+ ++..+.+.+|||+|++. +..+...+++.+|++++|||++++.+|+.+
T Consensus 18 Ssl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~ 96 (175)
T 2nzj_A 18 TSLASLFAGKQERDLHEQLGEDVYERTLTV-DGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESA 96 (175)
T ss_dssp HHHHHHHHCC-----CCCSSSSEEEEEEEE-TTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHH
T ss_pred HHHHHHHhcCCCccccCccccceeEEEEEE-CCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHH
Confidence 3677777 2233466778888888888 88899999999999987 566778899999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38 76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154 (193)
Q Consensus 76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~ 154 (193)
..|+..+.........|+++|+||+|+.. .+.+..+++..++...+++++++||++|.|++++|.+|++.+.....
T Consensus 97 ~~~~~~l~~~~~~~~~piilv~NK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 172 (175)
T 2nzj_A 97 SELRIQLRRTHQADHVPIILVGNKADLAR---CREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRR 172 (175)
T ss_dssp HHHHHHHHHCC----CCEEEEEECTTCTT---TCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhccCCCCEEEEEEChhhcc---ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Confidence 99999988764445689999999999976 46678888889998899999999999999999999999999876543
No 26
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.95 E-value=1.2e-26 Score=167.45 Aligned_cols=144 Identities=44% Similarity=0.798 Sum_probs=129.0
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+..
T Consensus 30 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 108 (179)
T 1z0f_A 30 CLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS 108 (179)
T ss_dssp HHHHHHHHSCCCSSCTTSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHH
T ss_pred HHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHH
Confidence 567776 5678899999999999998 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
|+..+.... ....|+++|+||+|+.. .+.+..+++.+++...+++++++||++|.|++++|.++++.+.+
T Consensus 109 ~~~~~~~~~-~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 109 WLTDARNLT-NPNTVIILIGNKADLEA---QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHS-CTTCEEEEEEECTTCGG---GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHHHHhc-CCCCcEEEEEECccccc---ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 999998775 34689999999999965 35678889999999999999999999999999999999988754
No 27
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.8e-26 Score=168.87 Aligned_cols=146 Identities=38% Similarity=0.626 Sum_probs=131.5
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.++..+..
T Consensus 30 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 108 (195)
T 1x3s_A 30 SLLLRFTDDTFDPELAATIGVDFKVKTISV-DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDN 108 (195)
T ss_dssp HHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHH
T ss_pred HHHHHHHcCCCCccCCCccceEEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHH
Confidence 567776 5678899999999999988 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
|+..+.........|+++|+||+|+.. +.+..+++.+++...+++++++||+++.|++++|.+|.+.+.+..
T Consensus 109 ~~~~i~~~~~~~~~p~ilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 109 WLNELETYCTRNDIVNMLVGNKIDKEN----REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp HHHHHTTCCSCSCCEEEEEEECTTSSS----CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHhcCcCCCcEEEEEECCcCcc----cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhhh
Confidence 999998765556789999999999954 567888899999999999999999999999999999999987643
No 28
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.95 E-value=8.4e-27 Score=166.99 Aligned_cols=146 Identities=24% Similarity=0.313 Sum_probs=117.5
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcccccc-chhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRS-ITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
||+++| ...+.++.+.++....+.+ ++..+.+.+|||+|++.+.. ++..+++++|++++|||++++++|+.+.
T Consensus 17 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 95 (169)
T 3q85_A 17 TLAGTFGGLQGDHAHEMENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVP 95 (169)
T ss_dssp HHHHHHHCC------------CEEEEEEEE-TTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred HHHHHHHhccCcccccCCCcCCeeeEEEEE-CCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHH
Confidence 567776 3344555567888888888 99999999999999998876 7788899999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
.|+..+.......+.|+++|+||+|+.+ .+.+..+++..++...+++++++||++|.|++++|.++++.+..+
T Consensus 96 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 96 ETLLRLRAGRPHHDLPVILVGNKSDLAR---SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHSTTSCCCEEEEEECTTCGG---GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccCCCCCEEEEeeCcchhh---cccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence 9999999886656789999999999976 477899999999999999999999999999999999999988653
No 29
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.95 E-value=5.9e-27 Score=174.88 Aligned_cols=148 Identities=22% Similarity=0.365 Sum_probs=125.5
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhh-HH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH-IP 76 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~ 76 (193)
||+++| ...|.||++.++ ...+.+ ++..+.+.+|||+|++.|..++..+++++|++|+|||++++.+|+. +.
T Consensus 42 sL~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 119 (214)
T 3q3j_B 42 AMLQVLAKDCYPETYVPTVFENY-TACLET-EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALK 119 (214)
T ss_dssp HHHHHHHHSCCCSSCCCCSEEEE-EEEEEC---CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHT
T ss_pred HHHHHHhcCCCCCCcCCeeeeeE-EEEEEE-CCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHH
Confidence 677777 667899998665 566677 8889999999999999999999999999999999999999999999 68
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCC---------CCCCccCHHHHHHHHHhCCC-cEEEecCCCCcC-HHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQS---------GVPREVSEAEAKAFASQNDI-LHFETSSRSGFQ-VENAFTAV 145 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~---------~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~e~f~~i 145 (193)
.|+..+.... ...|+++||||+|+.++ ...+.+..+++.+++...++ +|++|||++|.| |+++|.++
T Consensus 120 ~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l 197 (214)
T 3q3j_B 120 KWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 197 (214)
T ss_dssp HHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHH
Confidence 8999998874 46899999999999642 11256889999999999999 999999999998 99999999
Q ss_pred HHHHHHHhc
Q psy38 146 TQEIYNRVQ 154 (193)
Q Consensus 146 ~~~i~~~~~ 154 (193)
++.+.....
T Consensus 198 ~~~~~~~~~ 206 (214)
T 3q3j_B 198 SMLCLNKPS 206 (214)
T ss_dssp HHHHHC---
T ss_pred HHHHhccCc
Confidence 999886544
No 30
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.95 E-value=1.7e-26 Score=168.70 Aligned_cols=150 Identities=38% Similarity=0.628 Sum_probs=132.2
Q ss_pred eeeeec-----cCCCCCcceeeEE-EEEEEecCCc---------EEEEEEeeCCCccccccchhhhccCccEEEEEEeCC
Q psy38 3 TLLYLY-----IQISDPTVGVDFF-ARLVTMRDGA---------RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~-~~~~~~~~~~---------~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 67 (193)
||+++| ...+.||++.++. ...+.+ ++. .+.+.+|||+|++++..++..+++++|++|+|||++
T Consensus 26 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 104 (195)
T 3bc1_A 26 SVLYQYTDGKFNSKFITTVGIDFREKRVVYR-ANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLT 104 (195)
T ss_dssp HHHHHHHHSCCCCSCCCCCSEEEEEEEEEEC-TTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETT
T ss_pred HHHHHHhcCCCCcCcccccceeeeeEEEEEe-cCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECC
Confidence 567776 5678899998888 677777 665 789999999999999999999999999999999999
Q ss_pred ChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 68 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
++.++..+..|+..+.........|+++|+||+|+.. .+.+..+++.+++...+++++++||+++.|++++|.+|.+
T Consensus 105 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 181 (195)
T 3bc1_A 105 NEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED---QRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLD 181 (195)
T ss_dssp CHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG---GCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc---ccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999876546789999999999965 3567888899999999999999999999999999999999
Q ss_pred HHHHHhcCC
Q psy38 148 EIYNRVQSG 156 (193)
Q Consensus 148 ~i~~~~~~~ 156 (193)
.+.+.....
T Consensus 182 ~~~~~~~~~ 190 (195)
T 3bc1_A 182 LIMKRMERS 190 (195)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHhhhc
Confidence 998876543
No 31
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.95 E-value=2.1e-27 Score=171.47 Aligned_cols=147 Identities=32% Similarity=0.500 Sum_probs=126.8
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+++| ...+.||+|.++....+.+.++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+.+.
T Consensus 20 ssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 99 (178)
T 2hxs_A 20 TSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLE 99 (178)
T ss_dssp HHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred HHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHH
Confidence 3677777 34677999989999999983336899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC--CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIE--PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 77 ~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
.|+..+..... ...+|+++|+||+|+.+ .+.+..+++.+++...+++++++||++|.||+++|.+|++.+.+
T Consensus 100 ~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 100 DWYTVVKKVSEESETQPLVALVGNKIDLEH---MRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEEECGGGGG---GCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccCCCCeEEEEEEcccccc---ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999887532 23456889999999966 35678889999999999999999999999999999999998754
No 32
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.95 E-value=1.8e-26 Score=166.98 Aligned_cols=145 Identities=32% Similarity=0.663 Sum_probs=128.7
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||+|.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+..
T Consensus 27 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 105 (181)
T 2efe_B 27 SLVLRFVKDQFVEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKK 105 (181)
T ss_dssp HHHHHHHHCCCTTTSCCCSCCSEEEEEEEE-TTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCCCceeEEEEEEEEE-CCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 566776 5567899999999999988 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
|+..+.... ....|+++|+||+|+.. .+.+..+++.+++...+++++++||++|.|++++|.+|++.+...
T Consensus 106 ~~~~~~~~~-~~~~p~i~v~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 106 WVQELQAQG-NPNMVMALAGNKSDLLD---ARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV 176 (181)
T ss_dssp HHHHHHHHS-CTTCEEEEEEECTTCTT---TCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC--
T ss_pred HHHHHHHhc-CCCCcEEEEEECCcccc---cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 999998875 34689999999999976 466788899999999999999999999999999999999876543
No 33
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.95 E-value=2.5e-26 Score=168.31 Aligned_cols=147 Identities=44% Similarity=0.682 Sum_probs=131.8
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||+|.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|..+..
T Consensus 40 sLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~ 118 (193)
T 2oil_A 40 NLLSRFTRNEFSHDSRTTIGVEFSTRTVML-GTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVER 118 (193)
T ss_dssp HHHHHHHHSCCCSSCCCCSSEEEEEEEEEE-TTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHH
T ss_pred HHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 677777 5578899999999898888 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~ 154 (193)
|+..+.... ....|+++|+||+|+.. .+.+..+++..++...+++++++||++|.|++++|.+|.+.+.++..
T Consensus 119 ~l~~i~~~~-~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 191 (193)
T 2oil_A 119 WLKELYDHA-EATIVVMLVGNKSDLSQ---AREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVS 191 (193)
T ss_dssp HHHHHHTTS-CTTCEEEEEEECGGGGG---GCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCCeEEEEEECCCccc---ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 999998754 45689999999999966 35678889999999999999999999999999999999999987654
No 34
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.95 E-value=1.6e-26 Score=165.04 Aligned_cols=145 Identities=26% Similarity=0.334 Sum_probs=105.8
Q ss_pred eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38 3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW 78 (193)
Q Consensus 3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 78 (193)
||+++| ...+.++.|..+ ...+.+ ++..+.+.+||++|++.+..++..+++++|++++|||++++++|+.+..|
T Consensus 17 sli~~l~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 94 (166)
T 3q72_A 17 ALARIFGGVEDGPEAEAAGHTY-DRSIVV-DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL 94 (166)
T ss_dssp HHHHHHCCC----------CEE-EEEEEE-TTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHH
T ss_pred HHHHHHcCccccCCCCccccce-EEEEEE-CCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHH
Confidence 577777 335566776544 566677 88999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
+..+.........|+++|+||+|+.. .+.+..+++..++...+++++++||++|.|++++|.++.+.+..+
T Consensus 95 ~~~~~~~~~~~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 95 RVQLRRARQTDDVPIILVGNKSDLVR---SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp HHHHHHCC---CCCEEEEEECTTCCS---SCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEecccccc---ccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 99998865556789999999999976 477889999999999999999999999999999999999988764
No 35
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.95 E-value=1.2e-26 Score=169.58 Aligned_cols=144 Identities=42% Similarity=0.687 Sum_probs=127.4
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccc-cchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFR-SITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
||+++| ...+.||++.++....+.+ ++..+.+.+|||+|++++. .++..+++++|++|+|||++++.+|+.+.
T Consensus 35 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~ 113 (189)
T 1z06_A 35 CLTYRFCAGRFPDRTEATIGVDFRERAVDI-DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP 113 (189)
T ss_dssp HHHHHHHHSSCCSSCCCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHH
T ss_pred HHHHHHHcCCCCCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHH
Confidence 677777 5678899999999999998 8888999999999999998 88999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCC---cCHHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSG---FQVENAFTAVTQEIY 150 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~---~~i~e~f~~i~~~i~ 150 (193)
.|+..+.........|+++|+||+|+.. .+.+..+++..++...+++++++||+++ .||+++|.+|++.+.
T Consensus 114 ~~~~~i~~~~~~~~~piilv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 114 AWIEECKQHLLANDIPRILVGNKCDLRS---AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHHHHCCCSCCCEEEEEECTTCGG---GCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccccc---cceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 9999999886566789999999999966 3567888999999999999999999999 999999999988764
No 36
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.95 E-value=5e-27 Score=173.33 Aligned_cols=148 Identities=32% Similarity=0.390 Sum_probs=123.7
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++..+ ...+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+.+..
T Consensus 39 sli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 116 (201)
T 3oes_A 39 SLAHQFVEGEFSEGYDPTVENTY-SKIVTL-GKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIES 116 (201)
T ss_dssp HHHHHHHHSCCCSCCCCCSEEEE-EEEEC-----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCccceEE-EEEEEE-CCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHH
Confidence 567776 667889998666 666666 7888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcC
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQS 155 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~ 155 (193)
|+..+.........|+++|+||+|+.. .+.+...++..++...+++++++||++|.||+++|.+|++.+.+....
T Consensus 117 ~~~~i~~~~~~~~~piilv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 117 LYQKLHEGHGKTRVPVVLVGNKADLSP---EREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENS 191 (201)
T ss_dssp HHHHHHC-----CCCEEEEEECTTCGG---GCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHhcCCCCCCEEEEEECccCcc---ccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhhhh
Confidence 999998876566789999999999976 467888999999999999999999999999999999999998875544
No 37
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2.4e-27 Score=173.61 Aligned_cols=147 Identities=35% Similarity=0.598 Sum_probs=132.4
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||+|.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+.+..
T Consensus 38 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 116 (191)
T 3dz8_A 38 SFLFRYADDTFTPAFVSTVGIDFKVKTVYR-HEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD 116 (191)
T ss_dssp HHHHHHHHHTTCCCEEEEETTTEEEEEEEE-TTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHH
T ss_pred HHHHHHhcCCCCcccCCCeeeEEEEEEEEE-CCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHH
Confidence 677777 4677889998999999988 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~ 154 (193)
|+..+.... ....|+++|+||+|+.+ .+.+..+++..++...+++++++||++|.||+++|.+|++.+.++..
T Consensus 117 ~~~~i~~~~-~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 117 WATQIKTYS-WDNAQVILVGNKCDMEE---ERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHS-CTTCEEEEEEECTTCGG---GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhc-CCCCCEEEEEECCCCcc---ccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 999998864 45789999999999976 46788899999999999999999999999999999999999987654
No 38
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=1.6e-26 Score=165.32 Aligned_cols=145 Identities=37% Similarity=0.690 Sum_probs=129.0
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||+|.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..
T Consensus 18 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 96 (170)
T 1ek0_A 18 SIVLRFVSNDFAENKEPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARH 96 (170)
T ss_dssp HHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHH
Confidence 567666 5578899999999899998 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
|+..+.... ....|+++|+||+|+......+.+..+++.+++...+++++++||++|.|++++|.++.+.+
T Consensus 97 ~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 97 WVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp HHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred HHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999998875 45689999999999976433367888899999999999999999999999999999998754
No 39
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=170.06 Aligned_cols=145 Identities=38% Similarity=0.699 Sum_probs=125.6
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||+|.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+..
T Consensus 41 sLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~ 119 (192)
T 2il1_A 41 SLMERFTDDTFCEACKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK 119 (192)
T ss_dssp HHHHHHCC--------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHH
T ss_pred HHHHHHhcCCCCcCCCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHH
Confidence 677777 4567899999999999998 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC-CCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-DILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
|+..+.... ....|+++|+||+|+.. .+.+..+++.+++... +++++++||++|.||+++|.+|++.+.++
T Consensus 120 ~~~~i~~~~-~~~~piilV~NK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 120 WMKMIDKYA-SEDAELLLVGNKLDCET---DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHS-CTTCEEEEEEECGGGGG---GCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhc-CCCCcEEEEEECccccc---ccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 999887764 45689999999999976 3667888888999884 78999999999999999999999988753
No 40
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.94 E-value=6.7e-27 Score=170.95 Aligned_cols=143 Identities=27% Similarity=0.350 Sum_probs=121.3
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+++| ...|.||++.++ ...+.+ ++..+.+++|||+|++++..+ ..+++++|++|+|||++++++|+.+.
T Consensus 35 TsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~ 111 (187)
T 3c5c_A 35 SALTVKFLTKRFISEYDPNLEDTY-SSEETV-DHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSS 111 (187)
T ss_dssp HHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCCCcccee-eEEEEE-CCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHH
Confidence 3677776 567899998665 456677 888999999999999998875 67999999999999999999999999
Q ss_pred HHHHHHHHhcC--CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecC-CCCcCHHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIE--PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS-RSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 77 ~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa-~~~~~i~e~f~~i~~~i~ 150 (193)
.|+..+..... ....|+++|+||+|+.. .+.+..+++.++++..++++++||| ++|.||+++|.++++.+.
T Consensus 112 ~~~~~i~~~~~~~~~~~piilv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 112 SYLELLALHAKETQRSIPALLLGNKLDMAQ---YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHHHHHCCCCCEEEEEECGGGGG---GCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCCEEEEEECcchhh---cCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence 99999987642 24689999999999966 4668889999999999999999999 899999999999998875
No 41
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.94 E-value=1.3e-26 Score=165.63 Aligned_cols=143 Identities=32% Similarity=0.569 Sum_probs=128.9
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++.++....+.+ ++..+.+.+|||+|++++..++..+++++|++++|||++++.+++.+..
T Consensus 20 sl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 98 (168)
T 1z2a_A 20 SMIQRYCKGIFTKDYKKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISS 98 (168)
T ss_dssp HHHHHHHHCCCCCCSSCCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHH
T ss_pred HHHHHHHcCCCCCCCCCceEEEEEEEEEEE-CCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHH
Confidence 566666 5678999999999999998 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
|+..+.... ...|+++|+||+|+.+ .+.+..+++.+++...+++++++||+++.|++++|.++.+.+.+
T Consensus 99 ~~~~i~~~~--~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 99 WREKVVAEV--GDIPTALVQNKIDLLD---DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHH--CSCCEEEEEECGGGGG---GCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred HHHHHHHhC--CCCCEEEEEECcccCc---ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 999998875 4578999999999975 35678888999999999999999999999999999999988764
No 42
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.94 E-value=2.3e-26 Score=167.83 Aligned_cols=142 Identities=20% Similarity=0.362 Sum_probs=121.6
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||.+ ++ ...+.+ ++..+.+++|||+|++.+. +++++|++++|||++++.+|+.+..
T Consensus 35 sL~~~~~~~~~~~~~~~t~~-~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~ 106 (184)
T 3ihw_A 35 ALVHRYLTGTYVQEESPEGG-RF-KKEIVV-DGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYN 106 (184)
T ss_dssp HHHHHHHHSSCCCCCCTTCE-EE-EEEEEE-TTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCcCCCcc-eE-EEEEEE-CCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHH
Confidence 677777 456888853 44 477888 9999999999999998876 8889999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
|+..+.........|+++|+||+|+... ..+.+..+++.+++...+ +.|++|||++|.||+++|.++++.+.+..
T Consensus 107 ~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 107 YFLRLCSFRNASEVPMVLVGTQDAISAA-NPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHTTSCGGGSCEEEEEECTTCBTT-BCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCCCCEEEEEECcccccc-cccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999988754456899999999999421 146788999999999987 89999999999999999999999988764
No 43
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.94 E-value=3e-27 Score=176.38 Aligned_cols=150 Identities=39% Similarity=0.643 Sum_probs=130.9
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCc----------EEEEEEeeCCCccccccchhhhccCccEEEEEEeCC
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGA----------RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~----------~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 67 (193)
||+++| ...+.||++.++....+.+ ++. .+.+.||||+|++++..++..+++++|++|+|||++
T Consensus 40 sLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~ 118 (217)
T 2f7s_A 40 TFLYRYTDNKFNPKFITTVGIDFREKRVVY-NAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLT 118 (217)
T ss_dssp HHHHHHHCSCCCCEEEEEEEEEEEEEEEEE-EC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred HHHHHHhcCCCCcCCCCceeEEEEEEEEEE-CCccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECc
Confidence 567776 4567889998998888888 665 789999999999999999999999999999999999
Q ss_pred ChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 68 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
++.+++.+..|+..+.........|+++|+||+|+.. .+.+..+++.+++...+++++++||+++.||+++|.+|++
T Consensus 119 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 195 (217)
T 2f7s_A 119 SQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD---QREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLD 195 (217)
T ss_dssp CHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG---GCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc---ccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999998887654436789999999999966 3567888999999999999999999999999999999999
Q ss_pred HHHHHhcCC
Q psy38 148 EIYNRVQSG 156 (193)
Q Consensus 148 ~i~~~~~~~ 156 (193)
.+.++....
T Consensus 196 ~i~~~~~~~ 204 (217)
T 2f7s_A 196 LIMKRMEQC 204 (217)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhcC
Confidence 998876543
No 44
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.94 E-value=4e-27 Score=175.08 Aligned_cols=147 Identities=29% Similarity=0.424 Sum_probs=121.9
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP- 76 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~- 76 (193)
||+++| ...|.||++..+ ...+.+ ++..+.+.+|||+|+++|..++..+++++|++|+|||++++++|+.+.
T Consensus 24 sli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~ 101 (212)
T 2j0v_A 24 CMLICYTSNKFPTDYIPTVFDNF-SANVAV-DGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLK 101 (212)
T ss_dssp HHHHHHHHSCCCSSCCCSSCCCE-EEEEEC-SSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHhcCCCCccCCCccceeE-EEEEEE-CCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHH
Confidence 567776 567889998554 556677 888999999999999999999999999999999999999999999996
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC-----CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSG-----VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-----~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
.|+..+.... ...|+++|+||+|+.... ....+..+++.+++...++ +++++||++|.||+++|.++++.+.
T Consensus 102 ~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 102 KWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 179 (212)
T ss_dssp THHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHh
Confidence 7999988764 368999999999986520 0113578888999999886 9999999999999999999999887
Q ss_pred HHh
Q psy38 151 NRV 153 (193)
Q Consensus 151 ~~~ 153 (193)
+..
T Consensus 180 ~~~ 182 (212)
T 2j0v_A 180 QPP 182 (212)
T ss_dssp CC-
T ss_pred hhh
Confidence 643
No 45
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.94 E-value=3.3e-26 Score=163.68 Aligned_cols=142 Identities=35% Similarity=0.671 Sum_probs=126.9
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++.++....+.+ ++..+.+.+||++|++++..++..+++++|++|+|||++++.+++.+..
T Consensus 21 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 99 (170)
T 1r2q_A 21 SLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKN 99 (170)
T ss_dssp HHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHH
Confidence 567776 4568899999998888888 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
|+..+.... ....|+++|+||+|+.. .+.+..+++.+++...+++++++||++|.|++++|.+|.+.+
T Consensus 100 ~~~~~~~~~-~~~~~iilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 100 WVKELQRQA-SPNIVIALSGNKADLAN---KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp HHHHHHHHS-CTTCEEEEEEECGGGGG---GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred HHHHHHHhc-CCCCcEEEEEECccCcc---ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999998875 34689999999999965 356788889999999999999999999999999999998754
No 46
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.94 E-value=5.3e-26 Score=163.96 Aligned_cols=144 Identities=33% Similarity=0.565 Sum_probs=124.7
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||+|.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..
T Consensus 22 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 100 (177)
T 1wms_A 22 SLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN 100 (177)
T ss_dssp HHHHHHHHSCCCC----CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHH
T ss_pred HHHHHHHcCCCCCCCCCceeeeEEEEEEEE-CCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHH
Confidence 567776 5678899999999999998 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC---CCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH-hCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEP---HRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS-QNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 78 ~~~~i~~~~~~---~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
|+..+...... ...|+++|+||+|+.. +.+..+++.+++. ..+++++++||++|.|++++|.++++.+++
T Consensus 101 ~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 101 WKKEFIYYADVKEPESFPFVILGNKIDISE----RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHTCSCTTTSCEEEEEECTTCSS----CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccccccCCCcEEEEEECCcccc----cccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999876542 5689999999999964 5678888889988 567899999999999999999999998875
No 47
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.94 E-value=4.4e-26 Score=162.68 Aligned_cols=142 Identities=27% Similarity=0.438 Sum_probs=125.3
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++..+ ...+.+ ++..+.+.+|||+|++++..++..+++++|++++|||++++.+|+.+..
T Consensus 18 sli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 95 (167)
T 1c1y_A 18 ALTVQFVQGIFVEKYDPTIEDSY-RKQVEV-DCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD 95 (167)
T ss_dssp HHHHHHHHCCCCCSCCCCSEEEE-EEEEES-SSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHH
T ss_pred HHHHHHHcCCCCCCCCCCccceE-EEEEEE-CCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 566776 567889998554 466677 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC-CCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-DILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
|+..+.........|+++|+||+|+.+ .+.+..+++..++... +++++++||++|.|++++|.++.+.+
T Consensus 96 ~~~~i~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 96 LREQILRVKDTEDVPMILVGNKCDLED---ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp HHHHHHHHHCCSCCCEEEEEECTTCGG---GCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHhhCcCCCcEEEEEECccccc---cccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 999998876666789999999999976 4667888899999887 78999999999999999999999876
No 48
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=2.6e-26 Score=168.35 Aligned_cols=145 Identities=35% Similarity=0.596 Sum_probs=129.3
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+++| ...+.||+|.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+.
T Consensus 37 Ssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~ 115 (192)
T 2fg5_A 37 SSIVCRFVQDHFDHNISPTIGASFMTKTVPC-GNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLK 115 (192)
T ss_dssp HHHHHHHHHCCCCTTCCCCSSEEEEEEEEEC-SSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcCCCcceeEEEEEEEe-CCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHH
Confidence 3677777 4578999999999888888 888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
.|+..+.... ....|+++|+||+|+.. .+.+..+++.+++...+++++++||+++.|++++|.+|.+.+.+
T Consensus 116 ~~~~~i~~~~-~~~~piiiv~NK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 116 KWVKELKEHG-PENIVMAIAGNKCDLSD---IREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp HHHHHHHHHS-CTTCEEEEEEECGGGGG---GCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred HHHHHHHHhC-CCCCcEEEEEECccccc---ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 9999998865 45689999999999965 35678899999999999999999999999999999999987644
No 49
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.94 E-value=5.4e-26 Score=164.29 Aligned_cols=145 Identities=19% Similarity=0.301 Sum_probs=120.4
Q ss_pred eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
+||+++| ...+.||++ +.+.+.+.+ ++..+.+++|||+|+++ ..+++++|++|+|||++++++|+.+..
T Consensus 21 Tsli~~l~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~ 93 (178)
T 2iwr_A 21 SSLIHRFLTGSYQVLEKTES-EQYKKEMLV-DGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSR 93 (178)
T ss_dssp HHHHHHHHHSCCCCCSSCSS-SEEEEEEEE-TTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcCCCcc-eeEEEEEEE-CCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHH
Confidence 3677777 334889998 455677888 88999999999999976 568899999999999999999999999
Q ss_pred HHHHHHHhcC--CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC-CCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38 78 WMMEAKRHIE--PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-DILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154 (193)
Q Consensus 78 ~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~ 154 (193)
|+..+..... ....|+++|+||+|+... ..+.+..+++.+++... +++++++||++|.|++++|.++++.+.....
T Consensus 94 ~~~~i~~~~~~~~~~~piilv~nK~Dl~~~-~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 172 (178)
T 2iwr_A 94 LHGQLSSLRGEGRGGLALALVGTQDRISAS-SPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRK 172 (178)
T ss_dssp HHHHHHHHHCSSSCCCEEEEEEECTTCBTT-BCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECcccccc-ccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHHHh
Confidence 8777766543 246899999999999421 13668889999998875 6899999999999999999999999987654
No 50
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.94 E-value=9.1e-26 Score=161.46 Aligned_cols=142 Identities=34% Similarity=0.639 Sum_probs=127.6
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||+|.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+..
T Consensus 21 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 99 (170)
T 1z0j_A 21 SIMWRFVEDSFDPNINPTIGASFMTKTVQY-QNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKN 99 (170)
T ss_dssp HHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCceeEEEEEEEEEE-CCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHH
Confidence 566776 5578899999999888888 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
|+..+.... ....|+++|+||+|+.. .+.+..+++..++...+++++++||++|.|++++|.+|.+.+
T Consensus 100 ~~~~l~~~~-~~~~~iilv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 100 WVRELRQHG-PPSIVVAIAGNKCDLTD---VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp HHHHHHHHS-CTTSEEEEEEECTTCGG---GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred HHHHHHHhC-CCCCcEEEEEECCcccc---ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 999998864 45689999999999976 366788889999999999999999999999999999998865
No 51
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.94 E-value=3.5e-26 Score=168.94 Aligned_cols=151 Identities=25% Similarity=0.389 Sum_probs=107.7
Q ss_pred eeeeeec-------cCCCCCcceeeEEEEEEEecCCc--EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHH
Q psy38 2 VTLLYLY-------IQISDPTVGVDFFARLVTMRDGA--RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72 (193)
Q Consensus 2 ~sll~r~-------~~~~~pt~~~~~~~~~~~~~~~~--~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 72 (193)
+||+++| ...+.||+|.++....+.+ ++. .+.+.+|||+|++.+..++..+++++|++|+|||++++.+|
T Consensus 34 ssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 112 (208)
T 2yc2_C 34 SALISMFTSKGSKFLKDYAMTSGVEVVVAPVTI-PDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESF 112 (208)
T ss_dssp ---------------------------CEEEEC-TTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHH
T ss_pred HHHHHHHHhCCCcccCCCCCccceEEEEEEEEE-CCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHH
Confidence 4677776 3478899988999999998 777 89999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcC--CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCC-CcCHHHHHHHHHHHH
Q psy38 73 EHIPVWMMEAKRHIE--PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS-GFQVENAFTAVTQEI 149 (193)
Q Consensus 73 ~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~-~~~i~e~f~~i~~~i 149 (193)
+.+..|+..+..... ....|+++|+||+|+... .+.+..+++.+++...+++++++||++ +.|++++|.+|++.+
T Consensus 113 ~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~--~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 113 ESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQ--RHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp HHHHHHHHHHHHHCSCTTSCCEEEEEEECC---------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccCCcEEEEEECcccchh--hccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 999999999998754 257899999999999651 256788899999999999999999999 999999999999998
Q ss_pred HHHhcC
Q psy38 150 YNRVQS 155 (193)
Q Consensus 150 ~~~~~~ 155 (193)
.+....
T Consensus 191 ~~~~~~ 196 (208)
T 2yc2_C 191 YRNYED 196 (208)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 876543
No 52
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=1.3e-25 Score=166.64 Aligned_cols=148 Identities=36% Similarity=0.624 Sum_probs=132.0
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+.+..
T Consensus 35 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 113 (213)
T 3cph_A 35 CLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ 113 (213)
T ss_dssp HHHHHHHHCCCCCSSSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred HHHHHHHhCCCCcccCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 567776 4678899999999999998 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG 156 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~ 156 (193)
|+..+.... ....|+++|+||+|+.. +.+..+++..++...+++++++||+++.||+++|.+|.+.+.+.....
T Consensus 114 ~~~~i~~~~-~~~~piilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 187 (213)
T 3cph_A 114 WFKTVNEHA-NDEAQLLLVGNKSDMET----RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSN 187 (213)
T ss_dssp HHHHHHHHT-TTCSEEEEEEECTTCSS----CCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhc-CCCCCEEEEEECCCCcc----cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 999998865 34689999999999943 567788888999999999999999999999999999999998876544
No 53
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.94 E-value=6.8e-26 Score=164.52 Aligned_cols=148 Identities=32% Similarity=0.451 Sum_probs=129.7
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++..+ ...+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+..
T Consensus 33 sli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 110 (187)
T 2a9k_A 33 ALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD 110 (187)
T ss_dssp HHHHHHHHSCCCCSCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHhhCCCCCcCCCccceEE-EEEEEE-CCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHH
Confidence 566666 567888887544 455667 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcC
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQS 155 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~ 155 (193)
|+..+.........|+++|+||+|+.. .+.+..+++.+++...+++++++||+++.|++++|.+|.+.+.++..+
T Consensus 111 ~~~~i~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 185 (187)
T 2a9k_A 111 FREQILRVKEDENVPFLLVGNKSDLED---KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME 185 (187)
T ss_dssp HHHHHHHHHCCTTCCEEEEEECGGGGG---GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCCCCEEEEEECccccc---cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 999999887666789999999999966 356788899999999999999999999999999999999999876543
No 54
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=1.2e-26 Score=170.50 Aligned_cols=142 Identities=24% Similarity=0.301 Sum_probs=121.4
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++..+ ...+.. ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+..
T Consensus 23 sli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 100 (199)
T 2gf0_A 23 SLVLRFVKGTFRDTYIPTIEDTY-RQVISC-DKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGP 100 (199)
T ss_dssp HHHHHHHHSCCCCTTSCCCCEEE-EEEEEE-TTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHH
T ss_pred HHHHHHHcCCCCCcccCccccce-eEEEEE-CCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHH
Confidence 567776 557889987544 455666 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC-CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIE-PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 78 ~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
|+..+..... ....|+++|+||+|+.. +.+..+++..++...+++++++||++|.|++++|.+|++.+.
T Consensus 101 ~~~~i~~~~~~~~~~piilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 101 IYKLIVQIKGSVEDIPVMLVGNKCDETQ----REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLET 170 (199)
T ss_dssp HHHHHHHHHSCGGGSCEEEEEECTTCSS----CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCS
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccCCc----cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 9888877643 23578999999999965 557788888999999999999999999999999999988653
No 55
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.94 E-value=4e-26 Score=162.79 Aligned_cols=144 Identities=32% Similarity=0.459 Sum_probs=123.7
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++..+ ...+.+ ++..+.+.+|||+|++++..++..+++++|++++|||++++.+++.+..
T Consensus 19 sl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 96 (168)
T 1u8z_A 19 ALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD 96 (168)
T ss_dssp HHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHHhCccCCCCCCCcceEE-EEEEEE-CCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHH
Confidence 566666 567888887554 455667 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
|+..+.........|+++|+||+|+.+ .+.+..+++.+++...+++++++||++|.|++++|.++++.+.+
T Consensus 97 ~~~~i~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 97 FREQILRVKEDENVPFLLVGNKSDLED---KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHCCTTSCEEEEEECGGGGG---GCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCCcEEEEEECccccc---cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 999999887666789999999999976 35678889999999999999999999999999999999998753
No 56
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=7.1e-26 Score=166.43 Aligned_cols=145 Identities=30% Similarity=0.410 Sum_probs=127.3
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...|.||++.++ ...+.+ ++..+.+.+|||+|++. ..++..+++++|++|+|||++++++|+.+..
T Consensus 43 sli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~ 119 (196)
T 2atv_A 43 ALVVRFLTKRFIWEYDPTLESTY-RHQATI-DDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLP 119 (196)
T ss_dssp HHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHH
T ss_pred HHHHHHHhCCCCcccCCCCCceE-EEEEEE-CCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHH
Confidence 567776 567889998555 555677 88899999999999988 7788999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCc-CHHHHHHHHHHHHHHHh
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGF-QVENAFTAVTQEIYNRV 153 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~e~f~~i~~~i~~~~ 153 (193)
|+..+.........|+++|+||+|+.. .+.+..+++.+++...+++++++||++|. |++++|.+|++.+.++.
T Consensus 120 ~~~~i~~~~~~~~~piilv~NK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 120 LKNILDEIKKPKNVTLILVGNKADLDH---SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHTTSCCCEEEEEECGGGGG---GCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCcEEEEEECccccc---ccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhhc
Confidence 999999876666789999999999976 36688899999999999999999999999 99999999999988754
No 57
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.94 E-value=1e-25 Score=165.50 Aligned_cols=148 Identities=27% Similarity=0.355 Sum_probs=122.2
Q ss_pred eeeeeecc------CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccc-cccchhhhccCccEEEEEEeCCChhHHhh
Q psy38 2 VTLLYLYI------QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQER-FRSITKSYYRNSVGALLVYDITSRASFEH 74 (193)
Q Consensus 2 ~sll~r~~------~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 74 (193)
+||++||. ....+++|.++..+.+.+ +|..+.+.+|||+|.+. +..+...+++.+|++|+|||+++++||+.
T Consensus 20 SsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~ 98 (192)
T 2cjw_A 20 STLANIFAGVHDSMDSDXEVLGEDTYERTLMV-DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEK 98 (192)
T ss_dssp HHHHHHHHHHSCCC----GGGCTTEEEEEEEE-TTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHH
T ss_pred HHHHHHHhcCcCCcCccccccceeEEEEEEEE-CCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHH
Confidence 36788871 123345778888888888 99999999999999876 55677889999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 75 ~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
+..|+..+.........|+++|+||+|+.. .+.+..+++..++...+++|++|||++|.||+++|.++++.+....
T Consensus 99 ~~~~~~~l~~~~~~~~~piilV~NK~Dl~~---~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 99 ASELRIQLRRARQTEDIPIILVGNKSDLVR---XREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHTTTSCCCEEEEEECTTCGG---GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCeEEEEEechhhhc---cccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHhhc
Confidence 999998888764445689999999999965 3667888888888889999999999999999999999999986654
No 58
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.94 E-value=2.3e-25 Score=163.73 Aligned_cols=143 Identities=29% Similarity=0.590 Sum_probs=126.4
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcE-------------------------------------EEEEEeeC
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGAR-------------------------------------IKLQLWDT 40 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~-------------------------------------~~l~l~D~ 40 (193)
||+++| ...+.||+|.++....+.+ ++.. +.+.+|||
T Consensus 22 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt 100 (208)
T 3clv_A 22 SIVLRLTKDTFHENTNTTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDT 100 (208)
T ss_dssp HHHHHHHHSCCCSSCCCCCSCEEEEEEEET-TC-------------------------------CCCTTTCEEEEEEEEC
T ss_pred HHHHHHHhCcCCCCcCccccceeEEEEEEe-cCccccccccccccccccccccccccccccccccccCccceeEEEEEEC
Confidence 567777 5678999999999998888 6655 89999999
Q ss_pred CCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHH
Q psy38 41 AGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFA 120 (193)
Q Consensus 41 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~ 120 (193)
+|++.+..++..+++++|++|+|||++++.+++.+..|+..+..... .|+++|+||+|+ . .+.+..+++.+++
T Consensus 101 ~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~---~piilv~NK~D~-~---~~~~~~~~~~~~~ 173 (208)
T 3clv_A 101 AGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN---YIIILVANKIDK-N---KFQVDILEVQKYA 173 (208)
T ss_dssp TTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC---CEEEEEEECTTC-C----CCSCHHHHHHHH
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC---CcEEEEEECCCc-c---cccCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999988653 899999999994 3 3667889999999
Q ss_pred HhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 121 SQNDILHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 121 ~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
...+++++++||++|.|++++|.+|.+.+.++.
T Consensus 174 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 174 QDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp HHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999988764
No 59
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.94 E-value=8.9e-26 Score=163.24 Aligned_cols=149 Identities=36% Similarity=0.580 Sum_probs=116.6
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||+|.++....+.+.++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..
T Consensus 23 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 102 (182)
T 1ky3_A 23 SLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKS 102 (182)
T ss_dssp HHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHH
T ss_pred HHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHH
Confidence 567776 567889999999999888833677899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC---CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH-hCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 78 WMMEAKRHIE---PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS-QNDILHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 78 ~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
|+..+..... ....|+++|+||+|+... .+.+..+++.+++. ..+++++++||++|.|++++|.++.+.+.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 103 WRDEFLVHANVNSPETFPFVILGNKIDAEES--KKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp HHHHHHHHHCCSCTTTCCEEEEEECTTSCGG--GCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCcCCCcEEEEEECCccccc--cccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 9999987753 256899999999999542 35577888888988 46789999999999999999999999988754
No 60
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.94 E-value=5.7e-26 Score=163.85 Aligned_cols=143 Identities=35% Similarity=0.624 Sum_probs=128.0
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..
T Consensus 29 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 107 (179)
T 2y8e_A 29 SLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSK 107 (179)
T ss_dssp HHHHHHHHSCCCSSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHH
T ss_pred HHHHHHHcCCCCCCCCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHH
Confidence 566776 5678899999999999998 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
|+..+.... ....|+++|+||+|+.+ .+.+..+++..++...+++++++||++|.|++++|.+|.+.+.
T Consensus 108 ~~~~i~~~~-~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 108 WIDDVRTER-GSDVIIMLVGNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp HHHHHHHHH-TTSSEEEEEEECGGGGG---GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred HHHHHHHhc-CCCCcEEEEEECCcccc---cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 999998765 34689999999999976 3667888899999999999999999999999999999987653
No 61
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.94 E-value=2.2e-26 Score=169.63 Aligned_cols=146 Identities=36% Similarity=0.529 Sum_probs=118.1
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||+|.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..
T Consensus 43 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~ 121 (199)
T 2p5s_A 43 SFLMRLCKNEFRENISATLGVDFQMKTLIV-DGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE 121 (199)
T ss_dssp HHHHHHHHCCCC----------CEEEEEEE-TTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHH
T ss_pred HHHHHHHhCCCCccCCCCccceeEEEEEEE-CCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHH
Confidence 567776 4568899998999899998 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCC---CCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQS---GVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~---~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
|+..+.... ....|+++|+||+|+... ...+.+..+++..++...+++++++||++|.||+++|.+|++.+.
T Consensus 122 ~~~~i~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 122 WVDMIEDAA-HETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHHHHHHHC----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHHHHhc-CCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 999888764 346899999999999521 013668888999999999999999999999999999999998775
No 62
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.94 E-value=1.3e-25 Score=164.72 Aligned_cols=145 Identities=28% Similarity=0.456 Sum_probs=125.6
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH-H
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI-P 76 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~ 76 (193)
||+++| ...+.||++.++. ..+.+ ++..+.+++|||+|++.+..++..+++++|++|+|||++++.+|+.+ .
T Consensus 38 sl~~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 115 (194)
T 3reg_A 38 CLLLAFSKGEIPTAYVPTVFENFS-HVMKY-KNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNIST 115 (194)
T ss_dssp HHHHHHHHSCCCSSCCCCSEEEEE-EEEEE-TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCccCCeeeeeeE-EEEEE-CCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHH
Confidence 567777 5678999986655 46667 88999999999999999999999999999999999999999999998 6
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCc-EEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL-HFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
.|+..+.... ...|+++|+||+|+..+. .+.+..+++.+++...++. ++++||++|.||+++|.++++.+..+
T Consensus 116 ~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 116 KWEPEIKHYI--DTAKTVLVGLKVDLRKDG-SDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp THHHHHHHHC--TTSEEEEEEECGGGCCTT-TTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhC--CCCCEEEEEEChhhccCC-CCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence 7888888653 468999999999996521 3668889999999999987 99999999999999999999988754
No 63
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.94 E-value=1.2e-25 Score=165.60 Aligned_cols=148 Identities=28% Similarity=0.383 Sum_probs=122.4
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP- 76 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~- 76 (193)
||+++| ...|.||++.. ....+.+ ++..+.+.+|||+|+++|..++..+++++|++|+|||++++.+|+.+.
T Consensus 35 sl~~~l~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 112 (201)
T 2q3h_A 35 SLVVSYTTNGYPTEYIPTAFDN-FSAVVSV-DGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSE 112 (201)
T ss_dssp HHHHHHHC--------CCSSEE-EEEEEEE-TTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCcccce-eEEEEEE-CCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHH
Confidence 566666 56788999744 4566777 888999999999999999999999999999999999999999999996
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT 146 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~ 146 (193)
.|+..+.... ...|+++|+||+|+..+. ..+.+..+++..++...++ ++++|||++|.||+++|.+++
T Consensus 113 ~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 190 (201)
T 2q3h_A 113 KWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAI 190 (201)
T ss_dssp THHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHH
Confidence 7999988764 268999999999996421 1256788889999998887 999999999999999999999
Q ss_pred HHHHHHhc
Q psy38 147 QEIYNRVQ 154 (193)
Q Consensus 147 ~~i~~~~~ 154 (193)
+.+.+...
T Consensus 191 ~~~~~~~~ 198 (201)
T 2q3h_A 191 VAGIQYSD 198 (201)
T ss_dssp HHHHHHHC
T ss_pred HHHhcccc
Confidence 99887644
No 64
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.94 E-value=6.4e-26 Score=161.57 Aligned_cols=144 Identities=31% Similarity=0.478 Sum_probs=126.9
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++ +.....+.+ ++..+.+.+|||+|++++..++..+++++|++++|||++++.+++.+..
T Consensus 18 sli~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 95 (167)
T 1kao_A 18 ALTVQFVTGTFIEKYDPTIE-DFYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKP 95 (167)
T ss_dssp HHHHHHHHSCCCSCCCTTCC-EEEEEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHHcCCCcccCCCCcc-eeEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHH
Confidence 566666 567888886 455677788 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
|+..+.........|+++|+||+|+.. .+.+..+++.+++...+++++++||++|.|++++|.++.+.+.+
T Consensus 96 ~~~~i~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 96 MRDQIIRVKRYEKVPVILVGNKVDLES---EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHTTTSCCCEEEEEECGGGGG---GCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEEECCcccc---cccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 999998876666789999999999965 46678888999999999999999999999999999999987753
No 65
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=1.7e-25 Score=164.00 Aligned_cols=144 Identities=25% Similarity=0.345 Sum_probs=124.0
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP- 76 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~- 76 (193)
||+++| ...+.||++..+ ...+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++++|..+.
T Consensus 33 sli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 110 (194)
T 2atx_A 33 CLLMSYANDAFPEEYVPTVFDHY-AVSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKE 110 (194)
T ss_dssp HHHHHHHHSSCCCSCCCSSCCCE-EEEEES-SSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCCccccee-EEEEEE-CCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHH
Confidence 566666 567899997555 566777 888999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT 146 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~ 146 (193)
.|+..+.... ...|+++|+||+|+.... ..+.+..+++.+++...++ +++++||++|.||+++|.+++
T Consensus 111 ~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 188 (194)
T 2atx_A 111 EWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 188 (194)
T ss_dssp THHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHH
Confidence 7999998864 268999999999996521 1246788999999999887 999999999999999999999
Q ss_pred HHHH
Q psy38 147 QEIY 150 (193)
Q Consensus 147 ~~i~ 150 (193)
+.++
T Consensus 189 ~~i~ 192 (194)
T 2atx_A 189 IAIL 192 (194)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9876
No 66
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.94 E-value=7.6e-26 Score=164.71 Aligned_cols=145 Identities=27% Similarity=0.393 Sum_probs=123.7
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH-H
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI-P 76 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~ 76 (193)
||+++| ...|.||++.++ ...+.+ ++..+.+.+|||+|++.|..++..+++++|++|+|||++++++|+.+ .
T Consensus 22 sli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 99 (184)
T 1m7b_A 22 ALLHVFAKDCFPENYVPTVFENY-TASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLK 99 (184)
T ss_dssp HHHHHHHHSCCCSSCCCCSEEEE-EEEEEC-SSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCCccceeE-EEEEEE-CCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHH
Confidence 677777 567899998665 456677 88899999999999999999999999999999999999999999999 6
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCC---------CCCCccCHHHHHHHHHhCC-CcEEEecCC-CCcCHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQS---------GVPREVSEAEAKAFASQND-ILHFETSSR-SGFQVENAFTAV 145 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~---------~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~e~f~~i 145 (193)
.|+..+.... ...|+++|+||+|+..+ ...+.++.+++.++++..+ ++|++|||+ ++.||+++|.++
T Consensus 100 ~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i 177 (184)
T 1m7b_A 100 KWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 177 (184)
T ss_dssp THHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHH
Confidence 7999888764 36899999999999641 1125688899999999887 699999999 689999999999
Q ss_pred HHHHHH
Q psy38 146 TQEIYN 151 (193)
Q Consensus 146 ~~~i~~ 151 (193)
++.+++
T Consensus 178 ~~~~l~ 183 (184)
T 1m7b_A 178 TLACVN 183 (184)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 998864
No 67
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.93 E-value=1.2e-25 Score=166.86 Aligned_cols=146 Identities=27% Similarity=0.390 Sum_probs=124.5
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH-
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI- 75 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~- 75 (193)
+||+++| ...|.||++.++ ...+.+ ++..+.+.+|||+|++.|..++..+++++|++|+|||++++.+|+.+
T Consensus 42 SsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~ 119 (205)
T 1gwn_A 42 TALLHVFAKDCFPENYVPTVFENY-TASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVL 119 (205)
T ss_dssp HHHHHHHHHSCCCSSCCCCSEEEE-EEEEES-SSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcCCccceeE-EEEEEE-CCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHH
Confidence 3677777 567899998666 456777 88899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCeEEEEeeCCCCCCC---------CCCCccCHHHHHHHHHhCC-CcEEEecCC-CCcCHHHHHHH
Q psy38 76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQS---------GVPREVSEAEAKAFASQND-ILHFETSSR-SGFQVENAFTA 144 (193)
Q Consensus 76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~---------~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~e~f~~ 144 (193)
..|+..+.... ...|+++|+||+|+..+ ...+.++.+++.++++..+ ++|++|||+ ++.||+++|.+
T Consensus 120 ~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~ 197 (205)
T 1gwn_A 120 KKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 197 (205)
T ss_dssp HTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHH
Confidence 68999888764 36899999999999641 1125688899999998877 699999999 68999999999
Q ss_pred HHHHHHH
Q psy38 145 VTQEIYN 151 (193)
Q Consensus 145 i~~~i~~ 151 (193)
+++.+++
T Consensus 198 l~~~~l~ 204 (205)
T 1gwn_A 198 ATLACVN 204 (205)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9998875
No 68
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.93 E-value=2e-25 Score=163.47 Aligned_cols=137 Identities=18% Similarity=0.228 Sum_probs=119.8
Q ss_pred CCCcceeeEEEEEE-EecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCC------ChhHHhhHHHHHHHHHH
Q psy38 12 SDPTVGVDFFARLV-TMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT------SRASFEHIPVWMMEAKR 84 (193)
Q Consensus 12 ~~pt~~~~~~~~~~-~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~i~~ 84 (193)
+.||+|.++....+ .+ ++..+.+++|||+|++++..++..+++++|++|+|||++ +.++|..+..|+..+..
T Consensus 53 ~~~t~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~ 131 (198)
T 3t1o_A 53 DERTLFFDFLPLDIGEV-KGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL 131 (198)
T ss_dssp SCEEEEEEECCSSCCCS-SSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred cccceeeeecccccccc-cCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc
Confidence 66799888887777 56 888999999999999999999999999999999999999 56788888889888742
Q ss_pred hcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38 85 HIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEIYNRVQSG 156 (193)
Q Consensus 85 ~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~ 156 (193)
.....|+++|+||+|+.. .+..+++.+++...++ +++++||++|.|++++|.+|++.+.++.+++
T Consensus 132 --~~~~~piilv~NK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~~ 197 (198)
T 3t1o_A 132 --TLDDVPIVIQVNKRDLPD-----ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVAGG 197 (198)
T ss_dssp --CTTSSCEEEEEECTTSTT-----CCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC--
T ss_pred --ccCCCCEEEEEEchhccc-----ccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhcC
Confidence 345789999999999965 3788899999999999 9999999999999999999999999877653
No 69
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.93 E-value=1.1e-24 Score=159.06 Aligned_cols=145 Identities=31% Similarity=0.446 Sum_probs=116.0
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.+|++. .....+.+ ++..+.+.+|||+|++++..++..+++.+|++++|||++++.++.++..
T Consensus 36 sli~~l~~~~~~~~~~~t~~~-~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 113 (190)
T 3con_A 36 ALTIQLIQNHFVDEYDPTIED-SYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINL 113 (190)
T ss_dssp HHHHHHHHSSCCSCCCTTCCE-EEEEEEEE-TTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHHcCCCccccCCccce-EEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHH
Confidence 566666 5567888864 44566777 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
|+..+.........|+++|+||+|+.. +.+..+++.+++...+++++++||+++.|++++|.+|++.+.+..
T Consensus 114 ~~~~i~~~~~~~~~p~ilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 185 (190)
T 3con_A 114 YREQIKRVKDSDDVPMVLVGNKCDLPT----RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYR 185 (190)
T ss_dssp HHHHHHHHHTCSCCCEEEEEECTTCSC----CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCCeEEEEEECCcCCc----ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 999998876556789999999999965 456788899999999999999999999999999999999887643
No 70
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.93 E-value=3.6e-25 Score=165.07 Aligned_cols=147 Identities=25% Similarity=0.407 Sum_probs=107.4
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP- 76 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~- 76 (193)
||+++| ...|.||++. .....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+.
T Consensus 49 sli~~l~~~~~~~~~~~t~~~-~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 126 (214)
T 2j1l_A 49 SLLMVFADGAFPESYTPTVFE-RYMVNLQV-KGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFN 126 (214)
T ss_dssp HHHHHHHC-------CCCCCE-EEEEEEEE-TTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCccce-eEEEEEEE-CCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHH
Confidence 566776 4678899864 44566777 888999999999999999999999999999999999999999999996
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT 146 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~ 146 (193)
.|+..+.... ...|+++|+||+|+.... ..+.+..+++.++++..++ ++++|||++|.||+++|.+|+
T Consensus 127 ~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~ 204 (214)
T 2j1l_A 127 RWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAA 204 (214)
T ss_dssp THHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 6999888764 358999999999996521 0136788889999999998 999999999999999999999
Q ss_pred HHHHHHh
Q psy38 147 QEIYNRV 153 (193)
Q Consensus 147 ~~i~~~~ 153 (193)
+.+++..
T Consensus 205 ~~~~~~~ 211 (214)
T 2j1l_A 205 EVALSSR 211 (214)
T ss_dssp HHHHHC-
T ss_pred HHHHHhh
Confidence 9987643
No 71
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.93 E-value=2.7e-25 Score=161.31 Aligned_cols=145 Identities=28% Similarity=0.404 Sum_probs=123.1
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP- 76 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~- 76 (193)
||+++| ...+.||++.. ....+.+ ++..+.+++|||+|++++..++..+++++|++|+|||++++.+|..+.
T Consensus 20 sl~~~l~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 97 (186)
T 1mh1_A 20 CLLISYTTNAFPGEYIPTVFDN-YSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRA 97 (186)
T ss_dssp HHHHHHHHSSCCSSCCCCSCCE-EEEEEEE-TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCcCCcccce-eEEEEEE-CCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHH
Confidence 566555 66788998744 4566677 889999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT 146 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~ 146 (193)
.|+..+..... ..|+++|+||+|+.... ..+.+..+++..++...++ +++++||++|.|++++|.++.
T Consensus 98 ~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 175 (186)
T 1mh1_A 98 KWYPEVRHHCP--NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175 (186)
T ss_dssp THHHHHHHHST--TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhCC--CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHH
Confidence 69988887642 68899999999986521 0146788889999999997 999999999999999999999
Q ss_pred HHHHH
Q psy38 147 QEIYN 151 (193)
Q Consensus 147 ~~i~~ 151 (193)
+.+.+
T Consensus 176 ~~~~~ 180 (186)
T 1mh1_A 176 RAVLC 180 (186)
T ss_dssp HHHSC
T ss_pred HHHhc
Confidence 98754
No 72
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.93 E-value=1.4e-24 Score=154.31 Aligned_cols=142 Identities=33% Similarity=0.481 Sum_probs=124.0
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||++++ ...+.||++ +.....+.+ ++..+.+.+||++|++++..++..+++.+|++++|||++++.++..+..
T Consensus 18 sl~~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 95 (166)
T 2ce2_X 18 ALTIQLIQNHFVDECDPTIE-DSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ 95 (166)
T ss_dssp HHHHHHHHSSCCSCCCTTCC-EEEEEEEEE-TTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHHhCcCccccCCccc-eEEEEEEEE-CCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHH
Confidence 566666 566788886 444566777 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
|+..+.........|+++|+||+|+.. +.+..+++.+++...+++++++||+++.|++++|.++.+.+.
T Consensus 96 ~~~~i~~~~~~~~~p~iiv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 96 YREQIKRVKDSDDVPMVLVGNKSDLAA----RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp HHHHHHHHHTCSCCCEEEEEECTTCSC----CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcEEEEEEchhhhh----cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 999998876655789999999999965 456788888999999999999999999999999999998875
No 73
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.93 E-value=1.2e-24 Score=160.52 Aligned_cols=145 Identities=29% Similarity=0.420 Sum_probs=123.2
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH-H
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI-P 76 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~ 76 (193)
||+++| ...|.||++.++.. .+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|..+ .
T Consensus 40 sli~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 117 (201)
T 2gco_A 40 CLLIVFSKDQFPEVYVPTVFENYIA-DIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE 117 (201)
T ss_dssp HHHHHHHHSSCCSSCCCSSCCCCEE-EEEE-TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHHhCcCCcccCCcccceEEE-EEEE-CCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHH
Confidence 566776 56788999877654 4677 88889999999999999999999999999999999999999999999 6
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT 146 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~ 146 (193)
.|+..+.... ...|+++|+||+|+.... ..+.+..+++.+++...++ +++++||++|.||+++|.+|.
T Consensus 118 ~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~ 195 (201)
T 2gco_A 118 KWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMAT 195 (201)
T ss_dssp THHHHHHHHS--TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHH
Confidence 7888887754 358899999999996521 1145788899999999988 899999999999999999999
Q ss_pred HHHHH
Q psy38 147 QEIYN 151 (193)
Q Consensus 147 ~~i~~ 151 (193)
+.+++
T Consensus 196 ~~~l~ 200 (201)
T 2gco_A 196 RAGLQ 200 (201)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 98763
No 74
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.92 E-value=2.1e-24 Score=160.98 Aligned_cols=147 Identities=22% Similarity=0.361 Sum_probs=125.3
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.+|++.++....+...++..+.+.+|||+|++.+..++..++.++|++|+|||++++.+++++..
T Consensus 26 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 105 (218)
T 4djt_A 26 TYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLAR 105 (218)
T ss_dssp HHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred HHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHH
Confidence 677777 456678888777777766634555899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
|+..+.... ....|+++|+||+|+.. .+.+..+.+..++...+++++++||++|.|++++|.+|++.+....
T Consensus 106 ~~~~~~~~~-~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 106 WVKEFQAVV-GNEAPIVVCANKIDIKN---RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRP 177 (218)
T ss_dssp HHHHHHHHH-CSSSCEEEEEECTTCC-------CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred HHHHHHHhc-CCCCCEEEEEECCCCcc---ccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 999998875 34578999999999976 4578888999999999999999999999999999999999886643
No 75
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.92 E-value=8.3e-27 Score=171.90 Aligned_cols=145 Identities=41% Similarity=0.648 Sum_probs=118.0
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+++| ...+.||++.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+.+.
T Consensus 47 Ssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 125 (199)
T 3l0i_B 47 SCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK 125 (199)
T ss_dssp TTTTTSSBCCCCCCHHHHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHH
Confidence 3677887 4456788888999999999 888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
.|+..+.... ....|+++|+||+|+.. .+.+..+++..++...+++++++||+++.||+++|.+|++.+.+
T Consensus 126 ~~~~~i~~~~-~~~~p~ilv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 126 QWLQEIDRYA-SENVNKLLVGNKCDLTT---KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp HHHHHHHSCC--CCSEEEEC-CCSSCC-----CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHhc-cCCCCEEEEEECccCCc---cccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999997654 44689999999999976 35566667788999999999999999999999999999876643
No 76
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.92 E-value=1.2e-25 Score=160.27 Aligned_cols=145 Identities=22% Similarity=0.343 Sum_probs=108.9
Q ss_pred eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
+||+++| ...+.||+| +....+.. ..+.+.+|||+|++++..++..+++++|++++|||++++++|..+..
T Consensus 14 ssl~~~l~~~~~~~~~~t~~--~~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 88 (164)
T 1r8s_A 14 TTILYKLKLGEIVTTIPTIG--FNVETVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 88 (164)
T ss_dssp HHHHHHHHHHCSSCCCCCSS--CCEEEEEC---SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHH
T ss_pred HHHHHHHHcCCcCcccCcCc--eeEEEEEE---CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 3677777 445788987 44444544 34789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
|+..+.........|+++|+||+|+.+....+.+....+...+...++++++|||++|.|++++|.++.+.+.+
T Consensus 89 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 89 ELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp HHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred HHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence 99988875444568999999999996521111111111111222245679999999999999999999987653
No 77
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.92 E-value=5e-25 Score=161.79 Aligned_cols=147 Identities=17% Similarity=0.257 Sum_probs=113.0
Q ss_pred eeeeeec-----cC-CCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH
Q psy38 2 VTLLYLY-----IQ-ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI 75 (193)
Q Consensus 2 ~sll~r~-----~~-~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 75 (193)
+||+++| .. .|.||+|. ....+. +..+.+.+|||+|++++..++..+++++|++|+|||++++++|..+
T Consensus 31 Ssl~~~l~~~~~~~~~~~~t~~~--~~~~~~---~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~ 105 (199)
T 4bas_A 31 TTIINQVKPAQSSSKHITATVGY--NVETFE---KGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVV 105 (199)
T ss_dssp HHHHHHHSCCC----CCCCCSSE--EEEEEE---ETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHH
T ss_pred HHHHHHHhcCCCcccccccccce--eEEEEE---eCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHH
Confidence 3677777 44 78999983 333343 3558899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC-------CCCeEEEEeeCCCCCCCCCCCccCHHHHHHH-HHhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38 76 PVWMMEAKRHIEP-------HRPVFALVGCKLDLLQSGVPREVSEAEAKAF-ASQNDILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 76 ~~~~~~i~~~~~~-------~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
..|+..+...... ...|+++|+||+|+........+........ ++..++++++|||++|.||+++|++|++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 185 (199)
T 4bas_A 106 KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQE 185 (199)
T ss_dssp HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHH
Confidence 9999988765221 2689999999999976311112222222222 2557789999999999999999999999
Q ss_pred HHHHHh
Q psy38 148 EIYNRV 153 (193)
Q Consensus 148 ~i~~~~ 153 (193)
.+.+..
T Consensus 186 ~~~~~~ 191 (199)
T 4bas_A 186 TASRQS 191 (199)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 988764
No 78
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.7e-24 Score=160.54 Aligned_cols=146 Identities=27% Similarity=0.416 Sum_probs=117.6
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH-H
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI-P 76 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~ 76 (193)
||+++| ...+.||++.++.. .+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|..+ .
T Consensus 40 sli~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 117 (207)
T 2fv8_A 40 CLLIVFSKDEFPEVYVPTVFENYVA-DIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPE 117 (207)
T ss_dssp HHHHHHHHSSCC-------CCEEEE-EEEE-TTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCCCcccceEEE-EEEE-CCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHH
Confidence 566776 45678998866654 4677 88889999999999999999999999999999999999999999999 6
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT 146 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~ 146 (193)
.|+..+.... ...|+++|+||+|+.... ..+.+..+++..++...++ +++++||++|.||+++|.+|+
T Consensus 118 ~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~ 195 (207)
T 2fv8_A 118 KWVPEVKHFC--PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETAT 195 (207)
T ss_dssp THHHHHHHHS--TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHH
Confidence 7988887753 358899999999996521 0145788889999999888 899999999999999999999
Q ss_pred HHHHHH
Q psy38 147 QEIYNR 152 (193)
Q Consensus 147 ~~i~~~ 152 (193)
+.++..
T Consensus 196 ~~i~~~ 201 (207)
T 2fv8_A 196 RAALQK 201 (207)
T ss_dssp HHHHSC
T ss_pred HHHHHH
Confidence 988753
No 79
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.92 E-value=5.6e-25 Score=164.60 Aligned_cols=144 Identities=24% Similarity=0.491 Sum_probs=126.1
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+++| ...+.||+|.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+.+.
T Consensus 29 Ssli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 107 (221)
T 3gj0_A 29 TTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP 107 (221)
T ss_dssp HHHHTTBHHHHHTCEEETTTTEEEEEEEEEE-TTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHH
T ss_pred HHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence 3677776 6678899999999999988 889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
.|+..+.... ...|+++|+||+|+.+. .+. .+...++...+++++++||++|.|++++|.+|.+.+....
T Consensus 108 ~~~~~~~~~~--~~~p~ilv~nK~Dl~~~----~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 108 NWHRDLVRVC--ENIPIVLCGNKVDIKDR----KVK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp HHHHHHHHHS--TTCCEEEEEECTTSSSC----SSC-GGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred HHHHHHHHhC--CCCCEEEEEECCccccc----ccc-HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 9999999874 36899999999999652 222 2455678888899999999999999999999999987654
No 80
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.92 E-value=9.4e-25 Score=161.65 Aligned_cols=143 Identities=28% Similarity=0.400 Sum_probs=120.4
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP- 76 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~- 76 (193)
||+++| ...+.||++ +.....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+++.
T Consensus 45 sLi~~l~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 122 (204)
T 4gzl_A 45 CLLISYTTNAFPGEYIPTVF-DNYSANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRA 122 (204)
T ss_dssp HHHHHHHHSCCCC-CCCCSE-EEEEEEEEC-C-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcCCeec-ceeEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 567555 668889986 666677777 889999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT 146 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~ 146 (193)
.|+..+.... ...|+++|+||+|+.... ..+.+..+++..+++..++ ++++|||++|.||+++|.+++
T Consensus 123 ~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 200 (204)
T 4gzl_A 123 KWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200 (204)
T ss_dssp THHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHH
Confidence 7998888764 468999999999986521 0123788899999999887 699999999999999999998
Q ss_pred HHH
Q psy38 147 QEI 149 (193)
Q Consensus 147 ~~i 149 (193)
+.+
T Consensus 201 ~~~ 203 (204)
T 4gzl_A 201 RAV 203 (204)
T ss_dssp HTT
T ss_pred HHh
Confidence 754
No 81
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.92 E-value=7.2e-25 Score=157.02 Aligned_cols=145 Identities=21% Similarity=0.337 Sum_probs=112.3
Q ss_pred eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
+||+++| ...+.||+| +....+.+ + .+.+.+|||+|++.+..++..+++++|++|+|||++++.+|..+..
T Consensus 21 ssl~~~l~~~~~~~~~~t~~--~~~~~~~~-~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 95 (171)
T 1upt_A 21 TTILYRLQVGEVVTTIPTIG--FNVETVTY-K--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 95 (171)
T ss_dssp HHHHHHHHHSSCCCCCCCSS--EEEEEEEE-T--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHH
T ss_pred HHHHHHHhcCCCCCcCCcCc--cceEEEEE-C--CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 3677777 446788887 44455666 4 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
|+..+.........|+++|+||+|+........+....+..++...+++++++||++|.|++++|.++.+.+.+
T Consensus 96 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 96 ELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 99888775444578999999999996631111122222222333456789999999999999999999998754
No 82
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.9e-24 Score=154.74 Aligned_cols=142 Identities=26% Similarity=0.309 Sum_probs=120.6
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||++..+ ...+.. ++..+.+.+|||+|++++..++..+++.+|++|+|||++++.+++.+..
T Consensus 18 sli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 95 (172)
T 2erx_A 18 SLVLRFVKGTFRESYIPTVEDTY-RQVISC-DKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKP 95 (172)
T ss_dssp HHHHHHHTCCCCSSCCCCSCEEE-EEEEEE-TTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHH
T ss_pred HHHHHHHcCCCCCCCCCCccccE-EEEEEE-CCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHH
Confidence 567776 457888987554 455566 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC-CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIE-PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 78 ~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
|+..+..... ....|+++|+||+|+.. .+.+...++..++...+++++++||++|.|++++|.+|.+.+
T Consensus 96 ~~~~i~~~~~~~~~~pii~v~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 96 IYEQICEIKGDVESIPIMLVGNKCDESP---SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp HHHHHHHHHC---CCCEEEEEECGGGGG---GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCCCCCEEEEEEcccccc---ccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence 9988887643 24688999999999966 356788888899998899999999999999999999998754
No 83
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.92 E-value=1.5e-25 Score=162.31 Aligned_cols=144 Identities=30% Similarity=0.421 Sum_probs=105.7
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP- 76 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~- 76 (193)
||+++| ...+.||++..+. ..+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+.
T Consensus 23 sl~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 100 (182)
T 3bwd_D 23 CLLISYTSNTFPTDYVPTVFDNFS-ANVVV-NGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSK 100 (182)
T ss_dssp HHHHHHHHSCCC----------CB-CCCC--------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCCeeeeeEE-EEEEE-CCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHH
Confidence 566666 5678889875443 34555 778889999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCC-------CCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGV-------PREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
.|+..+.... ...|+++|+||+|+.+... ...+..+++.+++...++ +++++||++|.|++++|.++++.
T Consensus 101 ~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 178 (182)
T 3bwd_D 101 KWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRV 178 (182)
T ss_dssp THHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 6999888764 2689999999999865210 122578888999998886 99999999999999999999987
Q ss_pred HH
Q psy38 149 IY 150 (193)
Q Consensus 149 i~ 150 (193)
++
T Consensus 179 i~ 180 (182)
T 3bwd_D 179 VL 180 (182)
T ss_dssp HS
T ss_pred Hh
Confidence 64
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.91 E-value=1.9e-24 Score=159.35 Aligned_cols=137 Identities=17% Similarity=0.188 Sum_probs=106.6
Q ss_pred eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
+||+++| ...+.||++.. ...+.+ ++ +.+.+|||+|++.++.++..+++++|++|+|||++++++|..+..
T Consensus 39 SsLi~~l~~~~~~~~~~t~~~~--~~~~~~-~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~ 113 (198)
T 1f6b_A 39 TTLLHMLKDDRLGQHVPTLHPT--SEELTI-AG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKE 113 (198)
T ss_dssp HHHHHHHSCC------CCCCCS--CEEEEE-TT--EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHH
T ss_pred HHHHHHHhcCCCCccCCCCCce--eEEEEE-CC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence 3677777 34678898765 356666 66 889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh-----------------CCCcEEEecCCCCcCHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-----------------NDILHFETSSRSGFQVEN 140 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~e 140 (193)
|+..+.........|+++|+||+|+.. .++.+++.+++.. .++++++|||++|.||++
T Consensus 114 ~~~~~~~~~~~~~~piilv~NK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~ 188 (198)
T 1f6b_A 114 ELDSLMTDETIANVPILILGNKIDRPE-----AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGE 188 (198)
T ss_dssp HHHHHHTCGGGTTSCEEEEEECTTSTT-----CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHH
T ss_pred HHHHHHhCcccCCCcEEEEEECCCccc-----cCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHH
Confidence 999998754445689999999999954 3567777776652 345899999999999999
Q ss_pred HHHHHHHH
Q psy38 141 AFTAVTQE 148 (193)
Q Consensus 141 ~f~~i~~~ 148 (193)
+|.++.+.
T Consensus 189 l~~~l~~~ 196 (198)
T 1f6b_A 189 GFRWMAQY 196 (198)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99999864
No 85
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.91 E-value=2e-25 Score=162.27 Aligned_cols=139 Identities=25% Similarity=0.300 Sum_probs=108.4
Q ss_pred eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38 3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW 78 (193)
Q Consensus 3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 78 (193)
||+++| ...+.||+| +....+.+ ++ +.+.+|||+|++.++.++..+++++|++++|||++++++|+.+..|
T Consensus 31 sL~~~l~~~~~~~~~~t~g--~~~~~~~~-~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 105 (181)
T 1fzq_A 31 TLLKQLASEDISHITPTQG--FNIKSVQS-QG--FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQE 105 (181)
T ss_dssp HHHHHHCCSCCEEEEEETT--EEEEEEEE-TT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHH
T ss_pred HHHHHHhcCCCCcccCcCC--eEEEEEEE-CC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHH
Confidence 567777 334678887 44556666 54 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHH-----HHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAF-----ASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
+..+.........|+++|+||+|+.+. . ..++..+. +...++++++|||++|.||+++|.++++.+.+
T Consensus 106 ~~~~~~~~~~~~~piilv~NK~Dl~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 106 LTELLEEEKLSCVPVLIFANKQDLLTA---A--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp HHHHTTCGGGTTCCEEEEEECTTSTTC---C--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred HHHHHhChhhcCCCEEEEEECcCcccC---C--CHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 988876544456899999999999652 1 22222222 12245689999999999999999999987654
No 86
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.91 E-value=6.2e-24 Score=155.58 Aligned_cols=137 Identities=23% Similarity=0.265 Sum_probs=112.9
Q ss_pred eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
+||+++| ...+.||++.. ...+.+ ++ +.+.+|||+|++.++.++..+++++|++|+|||++++++|+.+..
T Consensus 37 Ssli~~l~~~~~~~~~~t~~~~--~~~~~~-~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 111 (190)
T 1m2o_B 37 TTLLHMLKNDRLATLQPTWHPT--SEELAI-GN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARV 111 (190)
T ss_dssp HHHHHHHHHSCCCCCCCCCSCE--EEEEEE-TT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHH
T ss_pred HHHHHHHhcCCCCccccCCCCC--eEEEEE-CC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHH
Confidence 3677777 44688898754 456666 66 889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh------------CCCcEEEecCCCCcCHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ------------NDILHFETSSRSGFQVENAFTAV 145 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~e~f~~i 145 (193)
|+..+.........|+++|+||+|+.. .++.++..++... .++++++|||++|.||+++|+++
T Consensus 112 ~~~~~~~~~~~~~~piilv~NK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 186 (190)
T 1m2o_B 112 ELDALFNIAELKDVPFVILGNKIDAPN-----AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWL 186 (190)
T ss_dssp HHHHHHTCGGGTTCCEEEEEECTTSTT-----CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHHcchhhcCCCEEEEEECCCCcC-----CCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHH
Confidence 999988754445689999999999964 3556666665543 34689999999999999999999
Q ss_pred HHH
Q psy38 146 TQE 148 (193)
Q Consensus 146 ~~~ 148 (193)
++.
T Consensus 187 ~~~ 189 (190)
T 1m2o_B 187 SQY 189 (190)
T ss_dssp HTT
T ss_pred Hhh
Confidence 763
No 87
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.91 E-value=3.8e-25 Score=162.28 Aligned_cols=143 Identities=20% Similarity=0.330 Sum_probs=103.6
Q ss_pred eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38 3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW 78 (193)
Q Consensus 3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 78 (193)
||+++| ...+.||+| +....+.. + .+.+.+|||+|++++..++..+++++|++|+|||++++++|+.+..|
T Consensus 44 sLi~~l~~~~~~~~~~t~~--~~~~~~~~-~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~ 118 (192)
T 2b6h_A 44 TILYKLKLGEIVTTIPTIG--FNVETVEY-K--NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADE 118 (192)
T ss_dssp HHHHHHCSSCCEEEEEETT--EEEEEEEE-T--TEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHH
T ss_pred HHHHHHHhCCccccCCcCc--eeEEEEEE-C--CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHH
Confidence 567777 234577876 44455555 4 48899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
+..+.........|+++|+||+|+.+....+.+....+..++...++++++|||++|.|++++|.+|++.+.
T Consensus 119 l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 119 LQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp HHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred HHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 999887544457899999999999652111111111111122234567999999999999999999998763
No 88
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.91 E-value=3.6e-25 Score=161.73 Aligned_cols=139 Identities=20% Similarity=0.277 Sum_probs=109.2
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||+|.++.. +.. ..+.+.+|||+|++++..++..+++++|++|+|||++++++|..+..
T Consensus 37 sli~~l~~~~~~~~~~~t~~~~~~~--~~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~ 111 (188)
T 1zd9_A 37 TFVNVIASGQFNEDMIPTVGFNMRK--ITK---GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKN 111 (188)
T ss_dssp HHHHHHHHSCCCCSCCCCCSEEEEE--EEE---TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHH
T ss_pred HHHHHHHcCCCCCccCCCCceeEEE--EEe---CCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHH
Confidence 677777 45788999876543 333 45889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHH-----HHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAF-----ASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
|+..+.........|+++|+||+|+... ....+..+. +...++++++|||++|.||+++|.+|++.+..
T Consensus 112 ~~~~~~~~~~~~~~piilv~NK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 112 ELHNLLDKPQLQGIPVLVLGNKRDLPGA-----LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHTCGGGTTCCEEEEEECTTSTTC-----CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred HHHHHHhCcccCCCCEEEEEECCCCccC-----CCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 9998887543456899999999999652 122222221 12245689999999999999999999986543
No 89
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.91 E-value=2.3e-24 Score=156.85 Aligned_cols=140 Identities=20% Similarity=0.296 Sum_probs=112.5
Q ss_pred eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38 3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW 78 (193)
Q Consensus 3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 78 (193)
||+++| ...+.||+| +....+.+ ++ +.+.+|||+|++++...+..+++++|++|+|||++++.+|+.+..|
T Consensus 33 sl~~~l~~~~~~~~~~t~~--~~~~~~~~-~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~ 107 (186)
T 1ksh_A 33 TILKKFNGEDVDTISPTLG--FNIKTLEH-RG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE 107 (186)
T ss_dssp HHHHHHTTCCCSSCCCCSS--EEEEEEEE-TT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHH
T ss_pred HHHHHHhcCCCCcccccCc--cceEEEEE-CC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHH
Confidence 567777 457888987 44456666 54 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHH-----HhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFA-----SQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
+..+.........|+++|+||+|+... ...++..+.. ...+++++++||++|.|++++|.++.+.+.++
T Consensus 108 ~~~~~~~~~~~~~piilv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 108 LQSLLVEERLAGATLLIFANKQDLPGA-----LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHTCGGGTTCEEEEEEECTTSTTC-----CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred HHHHHhChhcCCCcEEEEEeCccCCCC-----CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 998887644456899999999999652 2233333322 23467899999999999999999999987653
No 90
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.91 E-value=1.8e-24 Score=157.89 Aligned_cols=144 Identities=18% Similarity=0.281 Sum_probs=110.6
Q ss_pred eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38 3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW 78 (193)
Q Consensus 3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 78 (193)
||+++| ...+.||+| +....+.+ + .+.+.+|||+|++++..++..+++++|++|+|||++++++|..+..|
T Consensus 37 sli~~l~~~~~~~~~~t~~--~~~~~~~~-~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~ 111 (189)
T 2x77_A 37 SILYRLHLGDVVTTVPTVG--VNLETLQY-K--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHE 111 (189)
T ss_dssp HHHHHTCCSCCEEECSSTT--CCEEEEEE-T--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCCCc--eEEEEEEE-C--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHH
Confidence 567777 334678887 44445565 4 48899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
+..+.........|+++|+||+|+........+....+...+...++++++|||+++.|++++|+++.+.+.+
T Consensus 112 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 112 LYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp HHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHh
Confidence 9988876545678999999999996531111111111112223345689999999999999999999998765
No 91
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=2.2e-24 Score=157.27 Aligned_cols=139 Identities=19% Similarity=0.312 Sum_probs=107.3
Q ss_pred eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38 3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW 78 (193)
Q Consensus 3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 78 (193)
||+++| ...+.||+|. ....+.+ ++ +.+.+|||+|++++..++..+++++|++|+|||++++++|+.+..|
T Consensus 31 sl~~~l~~~~~~~~~~t~~~--~~~~~~~-~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~ 105 (187)
T 1zj6_A 31 TILYQFSMNEVVHTSPTIGS--NVEEIVI-NN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREE 105 (187)
T ss_dssp HHHHHHHTTSCEEEECCSCS--SCEEEEE-TT--EEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHH
T ss_pred HHHHHHhcCCCCcCcCCCcc--ceEEEEE-CC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHH
Confidence 567776 2267788873 3455566 54 8899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHH-----HhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFA-----SQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
+..+.........|+++|+||+|+.+. ...++..+.. ...+++++++||++|.|++++|++|++.+..
T Consensus 106 ~~~~~~~~~~~~~piilv~NK~Dl~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 106 LYKMLAHEDLRKAGLLIFANKQDVKEC-----MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp HHHHHTSGGGTTCEEEEEEECTTSTTC-----CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred HHHHHhchhhCCCeEEEEEECCCCcCC-----CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 999987643456899999999999652 3344443332 2346789999999999999999999987644
No 92
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.90 E-value=4.6e-23 Score=150.57 Aligned_cols=139 Identities=17% Similarity=0.264 Sum_probs=112.6
Q ss_pred eeeeec------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 3 TLLYLY------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 3 sll~r~------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
||+++| ...+.||+| +....+.+ ++ +.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+.
T Consensus 36 sli~~l~~~~~~~~~~~~t~~--~~~~~~~~-~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 110 (190)
T 2h57_A 36 TIINKLKPSNAQSQNILPTIG--FSIEKFKS-SS--LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAK 110 (190)
T ss_dssp HHHHHTSCGGGCCSSCCCCSS--EEEEEEEC-SS--CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCcCCccc--eeEEEEEE-CC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence 566776 346788887 55566666 54 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC--CCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH-----hCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEP--HRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS-----QNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 77 ~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
.|+..+...... ...|+++|+||+|+.. ....++..++.. ..+++++++||++|.||+++|++|.+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 111 EELDTLLNHPDIKHRRIPILFFANKMDLRD-----AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp HHHHHHHHSTTTTTSCCCEEEEEECTTSTT-----CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHhChhhccCCCeEEEEEeCcCccc-----CCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 999999876443 5689999999999965 234555555553 2457899999999999999999999876
Q ss_pred HH
Q psy38 150 YN 151 (193)
Q Consensus 150 ~~ 151 (193)
.+
T Consensus 186 ~~ 187 (190)
T 2h57_A 186 QT 187 (190)
T ss_dssp --
T ss_pred HH
Confidence 43
No 93
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.90 E-value=1.7e-22 Score=148.75 Aligned_cols=149 Identities=44% Similarity=0.706 Sum_probs=128.1
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||++++ ...+.||+|.++....+.+ +|..+.+.+||++|++.+..++..++++++++++|||+++..+++++..
T Consensus 20 TLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 98 (199)
T 2f9l_A 20 NLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVER 98 (199)
T ss_dssp HHHHHHHHSCCCC---CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred HHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHH
Confidence 566666 4567899998999899999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG 156 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~ 156 (193)
|+..+.... ....|+++|+||.|+.. .+.+..+++..++...++.++++||+++.|++++|.++.+.+.+.....
T Consensus 99 ~~~~~~~~~-~~~~~i~~v~nK~Dl~~---~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~~~~~ 173 (199)
T 2f9l_A 99 WLKELRDHA-DSNIVIMLVGNKSDLRH---LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 173 (199)
T ss_dssp HHHHHHHHS-CTTCEEEEEEECTTCGG---GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhc-CCCCeEEEEEECccccc---ccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 998887653 34689999999999975 3567788899999999999999999999999999999999998865433
No 94
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.90 E-value=1.8e-24 Score=157.07 Aligned_cols=137 Identities=20% Similarity=0.335 Sum_probs=109.1
Q ss_pred eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
+||+++| ...+.||+|... ..+.+ ++ +.+.+|||+|++++..++..+++++|++|+|||++++++|+.+..
T Consensus 35 Ssli~~l~~~~~~~~~~t~~~~~--~~~~~-~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~ 109 (181)
T 2h17_A 35 TTILYQFSMNEVVHTSPTIGSNV--EEIVI-NN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTRE 109 (181)
T ss_dssp HHHHHHHHTTSCEEEECCSSSSC--EEEEE-TT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHH
T ss_pred HHHHHHHhcCCCCccCCcCceee--EEEEE-CC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 3677777 346778887443 45566 55 889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHH-----HhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFA-----SQNDILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
|+..+.........|+++|+||+|+... ...++..+.. ...+++++++||++|.|++++|.+|++.
T Consensus 110 ~~~~~~~~~~~~~~piilv~NK~Dl~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 110 ELYKMLAHEDLRKAGLLIFANKQDVKEC-----MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp HHHHHHTCGGGTTCEEEEEEECTTSTTC-----CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred HHHHHHhChhhCCCeEEEEEECCCcccC-----CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 9998887543456899999999999652 3333333332 2345689999999999999999999764
No 95
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.90 E-value=4.3e-23 Score=162.77 Aligned_cols=145 Identities=28% Similarity=0.395 Sum_probs=124.0
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP- 76 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~- 76 (193)
||+++| ...+.||++ +.....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|.++.
T Consensus 170 sli~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 247 (332)
T 2wkq_A 170 CLLISYTTNAFPGEYIPTVF-DNYSANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRA 247 (332)
T ss_dssp HHHHHHHHSCCCCSCCCCSE-EEEEEEEEE-TTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCCccc-ceeEEEEEE-CCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHH
Confidence 567555 668899997 444666777 889999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT 146 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~ 146 (193)
.|+..+..... ..|+++|+||+|+.... ..+.+..+++..++...++ ++++|||++|.||+++|.+++
T Consensus 248 ~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 325 (332)
T 2wkq_A 248 KWYPEVRHHCP--NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325 (332)
T ss_dssp THHHHHHHHCT--TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHhhCC--CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHH
Confidence 69888887643 68999999999985421 0256888999999999997 999999999999999999999
Q ss_pred HHHHH
Q psy38 147 QEIYN 151 (193)
Q Consensus 147 ~~i~~ 151 (193)
+.++.
T Consensus 326 ~~~~~ 330 (332)
T 2wkq_A 326 RAVLC 330 (332)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 98764
No 96
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=5.3e-24 Score=154.30 Aligned_cols=140 Identities=19% Similarity=0.297 Sum_probs=108.2
Q ss_pred eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38 3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW 78 (193)
Q Consensus 3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 78 (193)
||+++| ...+.||+|. ....+.+ ++ +.+.+|||+|++++..++..+++++|++++|||++++.+|+.+..|
T Consensus 33 sli~~l~~~~~~~~~~t~~~--~~~~~~~-~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~ 107 (183)
T 1moz_A 33 TILYRLQIGEVVTTKPTIGF--NVETLSY-KN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKE 107 (183)
T ss_dssp HHHHHTCCSEEEEECSSTTC--CEEEEEE-TT--EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHH
T ss_pred HHHHHHhcCCcCccCCcCcc--ceEEEEE-CC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHH
Confidence 566776 3467888873 3455566 54 8899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH-----hCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS-----QNDILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
+..+.........|+++|+||+|+... ...++..+... ..+++++++||++|.|++++|+++.+.+.++
T Consensus 108 ~~~~~~~~~~~~~piilv~nK~Dl~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 108 LHLMLQEEELQDAALLVFANKQDQPGA-----LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHTTSSTTSSCEEEEEEECTTSTTC-----CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred HHHHHcChhhCCCeEEEEEECCCCCCC-----CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence 998887644567899999999999652 23333333332 2345799999999999999999999988764
No 97
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.89 E-value=5.6e-24 Score=154.92 Aligned_cols=145 Identities=21% Similarity=0.340 Sum_probs=108.2
Q ss_pred eeeeec-------cCCCCCcceeeEEEEEEEec--CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh-hHH
Q psy38 3 TLLYLY-------IQISDPTVGVDFFARLVTMR--DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR-ASF 72 (193)
Q Consensus 3 sll~r~-------~~~~~pt~~~~~~~~~~~~~--~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~ 72 (193)
||+++| ...+.||+|.++....+.+. ++..+.+.+|||+|+++|..++..++.+++++++|||++++ .+|
T Consensus 17 tLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~ 96 (184)
T 2zej_A 17 TLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEV 96 (184)
T ss_dssp HHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHH
T ss_pred HHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHH
Confidence 566666 34578999988887765541 24578899999999999999999999999999999999997 589
Q ss_pred hhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC---HHHHHHHHHhCCCc----EEEecCCCCc-CHHHHHHH
Q psy38 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS---EAEAKAFASQNDIL----HFETSSRSGF-QVENAFTA 144 (193)
Q Consensus 73 ~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~---~~~~~~~~~~~~~~----~~~~Sa~~~~-~i~e~f~~ 144 (193)
+.+..|+..+.... ...|+++||||+|+.+ .+.+. ...+..++...+++ ++++||+++. +++++|..
T Consensus 97 ~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~ 171 (184)
T 2zej_A 97 DAMKPWLFNIKARA--SSSPVILVGTHLDVSD---EKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKT 171 (184)
T ss_dssp HTHHHHHHHHHHHC--TTCEEEEEEECGGGCC---HHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC--CCCcEEEEEECCCccc---chhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHH
Confidence 99999999988753 3589999999999965 23332 34456677777876 9999999996 99999999
Q ss_pred HHHHHHHH
Q psy38 145 VTQEIYNR 152 (193)
Q Consensus 145 i~~~i~~~ 152 (193)
+.+.+...
T Consensus 172 i~~~~~~~ 179 (184)
T 2zej_A 172 IINESLNF 179 (184)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhcc
Confidence 98876553
No 98
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.82 E-value=6.1e-25 Score=162.39 Aligned_cols=145 Identities=28% Similarity=0.385 Sum_probs=120.2
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+++| ...+.||++. .....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+.
T Consensus 44 Ssli~~l~~~~~~~~~~~t~~~-~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~ 121 (204)
T 3th5_A 44 TCLLISYTTNAFPGEYIPTVFD-NYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVR 121 (204)
Confidence 4788777 5677888864 44566666 888899999999999999999999999999999999999999999996
Q ss_pred -HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCC---------CCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHH
Q psy38 77 -VWMMEAKRHIEPHRPVFALVGCKLDLLQSGV---------PREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAV 145 (193)
Q Consensus 77 -~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i 145 (193)
.|+..+..... ..|+++|+||+|+..... .+.+..+++.+++...++ +++++||++|.|++++|.+|
T Consensus 122 ~~~~~~l~~~~~--~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l 199 (204)
T 3th5_A 122 AKWYPEVRHHCP--NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 199 (204)
Confidence 78888876532 689999999999965210 025667778888888887 99999999999999999999
Q ss_pred HHHHH
Q psy38 146 TQEIY 150 (193)
Q Consensus 146 ~~~i~ 150 (193)
++.++
T Consensus 200 ~~~il 204 (204)
T 3th5_A 200 IRAVL 204 (204)
Confidence 88653
No 99
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.88 E-value=1.2e-23 Score=154.73 Aligned_cols=144 Identities=17% Similarity=0.265 Sum_probs=110.2
Q ss_pred eeeeec--cCCCCCcceeeEEEEEEE--ecCCcEEEEEEeeCCCccccccch---hhhccCccEEEEEEeCCCh--hHHh
Q psy38 3 TLLYLY--IQISDPTVGVDFFARLVT--MRDGARIKLQLWDTAGQERFRSIT---KSYYRNSVGALLVYDITSR--ASFE 73 (193)
Q Consensus 3 sll~r~--~~~~~pt~~~~~~~~~~~--~~~~~~~~l~l~D~~g~~~~~~~~---~~~~~~~d~~i~v~d~~~~--~s~~ 73 (193)
||++++ .....+|++.++....+. +.++..+.+++|||+|+++|..+. ..+++++|++|+|||++++ +++.
T Consensus 35 sLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~ 114 (196)
T 3llu_A 35 SIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALT 114 (196)
T ss_dssp HHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHH
T ss_pred HHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHH
Confidence 555554 112235666555554444 323677999999999999988776 8999999999999999997 7788
Q ss_pred hHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC----CCCccCHHHHHHHHH----hCCCcEEEecCCCCcCHHHHHHHH
Q psy38 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG----VPREVSEAEAKAFAS----QNDILHFETSSRSGFQVENAFTAV 145 (193)
Q Consensus 74 ~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~----~~~~v~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~e~f~~i 145 (193)
.+..|+..+... ....|+++||||+|+..+. ..+.+....+.+++. ..+++|++|||++ .||+++|.++
T Consensus 115 ~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l 191 (196)
T 3llu_A 115 RLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKV 191 (196)
T ss_dssp HHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHH
Confidence 888888887654 3468999999999985410 124466677778888 6788999999999 9999999999
Q ss_pred HHHH
Q psy38 146 TQEI 149 (193)
Q Consensus 146 ~~~i 149 (193)
++.+
T Consensus 192 ~~~l 195 (196)
T 3llu_A 192 VQKL 195 (196)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9865
No 100
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.88 E-value=1.5e-21 Score=142.95 Aligned_cols=142 Identities=44% Similarity=0.709 Sum_probs=125.3
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
||+++| ...+.||+|.++....+.+ +|..+.+++||++|++++..++..++++++++++|||.++..+|+.+..
T Consensus 44 TLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 122 (191)
T 1oix_A 44 NLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVER 122 (191)
T ss_dssp HHHHHHHHSCCCCSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHH
T ss_pred HHHHHHhcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHH
Confidence 566666 5578899999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
|+..+.... ....|+++|+||.|+.+ .+.+..+++..++...++.++++||+++.|++++|+++.+.+
T Consensus 123 ~~~~~~~~~-~~~~~i~~v~nK~Dl~~---~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 123 WLKELRDHA-DSNIVIMLVGNKSDLRH---LRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHS-CTTCEEEEEEECGGGGG---GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCCcEEEEEECccccc---ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 998877653 34679999999999975 355778889999999999999999999999999999998865
No 101
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.88 E-value=1.3e-22 Score=161.66 Aligned_cols=135 Identities=16% Similarity=0.157 Sum_probs=109.3
Q ss_pred CcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC----------hhHHhhHHHHHHHHH
Q psy38 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS----------RASFEHIPVWMMEAK 83 (193)
Q Consensus 14 pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~ 83 (193)
||+|++ ...+.+ + .+.+++|||+|+++++.+|..+|++++++|||||+++ .++|.+...|+..+.
T Consensus 179 ~T~Gi~--~~~~~~-~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~ 253 (353)
T 1cip_A 179 KTTGIV--ETHFTF-K--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSIC 253 (353)
T ss_dssp CCCSEE--EEEEEE-T--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHH
T ss_pred ceeceE--EEEEee-C--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHH
Confidence 345533 344555 4 4889999999999999999999999999999999998 567999999999998
Q ss_pred HhcCCCCCeEEEEeeCCCCCCCC-C-----------CCccCHHHHHHHHH-----------hCCCcEEEecCCCCcCHHH
Q psy38 84 RHIEPHRPVFALVGCKLDLLQSG-V-----------PREVSEAEAKAFAS-----------QNDILHFETSSRSGFQVEN 140 (193)
Q Consensus 84 ~~~~~~~~piilv~nK~Dl~~~~-~-----------~~~v~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~e 140 (193)
......+.|++||+||.||.... . ...++.+++.+++. ..++.+++|||+++.||.+
T Consensus 254 ~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~ 333 (353)
T 1cip_A 254 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQF 333 (353)
T ss_dssp TCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHH
T ss_pred cCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHH
Confidence 76444579999999999984310 0 01367788888886 3567899999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy38 141 AFTAVTQEIYNRV 153 (193)
Q Consensus 141 ~f~~i~~~i~~~~ 153 (193)
+|.++.+.++...
T Consensus 334 vF~~v~~~i~~~~ 346 (353)
T 1cip_A 334 VFDAVTDVIIKNN 346 (353)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 102
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.88 E-value=6.9e-23 Score=163.15 Aligned_cols=145 Identities=14% Similarity=0.109 Sum_probs=109.6
Q ss_pred cCCCCCcceeeEE---------EEEEEecCC----cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCC--------
Q psy38 9 IQISDPTVGVDFF---------ARLVTMRDG----ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT-------- 67 (193)
Q Consensus 9 ~~~~~pt~~~~~~---------~~~~~~~~~----~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~-------- 67 (193)
.++|.||++..+. ...+.+ ++ +.+.+++|||+|+++++.+|..+|++++++|+|||++
T Consensus 147 ~~~Y~PT~~D~~~~r~~T~Gi~e~~f~~-~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e 225 (354)
T 2xtz_A 147 DINYIPTKEDVLYARVRTTGVVEIQFSP-VGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFE 225 (354)
T ss_dssp STTCCCCHHHHHHCCCCCCSEEEEEECC-CCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSS
T ss_pred cCCCCCCchheeeecccccceeeEEEEe-ccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECccccccccc
Confidence 6789998753222 222334 55 6799999999999999999999999999999999998
Q ss_pred --ChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCC-CCCC-----------------ccCHHHHHHHHHh-----
Q psy38 68 --SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQS-GVPR-----------------EVSEAEAKAFASQ----- 122 (193)
Q Consensus 68 --~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~~~-----------------~v~~~~~~~~~~~----- 122 (193)
+.++|+++..|+..+.......+.|++|||||+||.++ .... ..+.+++.+++..
T Consensus 226 ~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l 305 (354)
T 2xtz_A 226 DEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEEL 305 (354)
T ss_dssp CTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHh
Confidence 78899999999999987644457899999999998431 0000 0124667777432
Q ss_pred -----------CCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38 123 -----------NDILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154 (193)
Q Consensus 123 -----------~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~ 154 (193)
..+.+++|||+++.||+++|.++.+.++....
T Consensus 306 ~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~~~l 348 (354)
T 2xtz_A 306 YYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNL 348 (354)
T ss_dssp HHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHHHHH
Confidence 23457899999999999999999999887543
No 103
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.88 E-value=1.6e-23 Score=164.15 Aligned_cols=145 Identities=12% Similarity=0.151 Sum_probs=108.8
Q ss_pred eeeeeec----c----CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcccccc---chhhhccCccEEEEEEeCCCh-
Q psy38 2 VTLLYLY----I----QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRS---ITKSYYRNSVGALLVYDITSR- 69 (193)
Q Consensus 2 ~sll~r~----~----~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~---~~~~~~~~~d~~i~v~d~~~~- 69 (193)
+||+++| . ..+.||+|.++.. + + ..+.+++|||+|+++|.. .+..||++++++|+|||++++
T Consensus 13 TSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v-~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~ 86 (331)
T 3r7w_B 13 SSICKVVFHNMQPLDTLYLESTSNPSLEH----F-S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEY 86 (331)
T ss_dssp THHHHHHHSCCCSGGGTTCCCCCSCCCEE----E-C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCT
T ss_pred HHHHHHHHcCCCCCccceecCeeeeeeEE----E-c-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCchH
Confidence 4667665 1 1378999987763 3 3 348899999999999974 368999999999999999997
Q ss_pred -hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCC----CCccCHHHHHHHHHh----CCCcEEEecCCCCcCHHH
Q psy38 70 -ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGV----PREVSEAEAKAFASQ----NDILHFETSSRSGFQVEN 140 (193)
Q Consensus 70 -~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----~~~v~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~e 140 (193)
+++..+..|+..+... .++.|+++||||+||..+.. .+.+..+++.++++. .++.|++|||++ .+|.+
T Consensus 87 ~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~e 163 (331)
T 3r7w_B 87 INAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYE 163 (331)
T ss_dssp THHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHH
T ss_pred HHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHH
Confidence 3333344445555443 34689999999999965211 145778888888886 678999999998 59999
Q ss_pred HHHHHHHHHHHHhcC
Q psy38 141 AFTAVTQEIYNRVQS 155 (193)
Q Consensus 141 ~f~~i~~~i~~~~~~ 155 (193)
+|..+++.+++..+.
T Consensus 164 AFs~iv~~li~~~~~ 178 (331)
T 3r7w_B 164 AFSRIVQKLIPELSF 178 (331)
T ss_dssp HHHHHHTTSSTTHHH
T ss_pred HHHHHHHHHHhhHHH
Confidence 999999987765433
No 104
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.87 E-value=1.4e-23 Score=160.59 Aligned_cols=142 Identities=23% Similarity=0.260 Sum_probs=107.9
Q ss_pred eeeeec--------cCCCCCcc-eeeEEEEEEE--------------ecCCcEEEEEEee--------------------
Q psy38 3 TLLYLY--------IQISDPTV-GVDFFARLVT--------------MRDGARIKLQLWD-------------------- 39 (193)
Q Consensus 3 sll~r~--------~~~~~pt~-~~~~~~~~~~--------------~~~~~~~~l~l~D-------------------- 39 (193)
||++|| ...+.||+ +.++..+.+. + ++..+.+++||
T Consensus 43 sLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~ 121 (255)
T 3c5h_A 43 CLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLE-DCVECKMHIVEQTEFIDDQTFQPHRSTALQP 121 (255)
T ss_dssp HHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC----------CEEEEEECCCEETTTCSBTTGGGCCC
T ss_pred HHHHHHHhccCCccccccCCcccccccceeEeeccccccccccccccc-CCcEEEEEEEEcccccccccccccccccccc
Confidence 566666 24567775 5666544433 3 67889999999
Q ss_pred ---CCCccccccchhhhcc---------------------CccEEEEEEeCCCh--hHHhhHHHHHHHHHHhcCCCCCeE
Q psy38 40 ---TAGQERFRSITKSYYR---------------------NSVGALLVYDITSR--ASFEHIPVWMMEAKRHIEPHRPVF 93 (193)
Q Consensus 40 ---~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~pi 93 (193)
++|+++|..++..++. ++|++|+|||++++ .+|+.+..|+..+.........|+
T Consensus 122 ~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~pi 201 (255)
T 3c5h_A 122 YIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPI 201 (255)
T ss_dssp HHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCE
T ss_pred ccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCE
Confidence 7888888888888888 89999999999998 999999999999987633346899
Q ss_pred EEEeeCCCCCCCCCCCccCHHHHHHHHHh-CCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 94 ALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 94 ilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
++|+||+|+.. .+.+ +++.+++.. .+++++++||++|.||+++|.+|++.+.
T Consensus 202 ilV~NK~Dl~~---~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 202 VVVLTKCDEGV---ERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp EEEEECGGGBC---HHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEEcccccc---cHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 99999999965 2333 567778876 4789999999999999999999998763
No 105
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.87 E-value=4.2e-22 Score=160.52 Aligned_cols=141 Identities=15% Similarity=0.089 Sum_probs=109.6
Q ss_pred cCCCCCcc-----------eeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC---------
Q psy38 9 IQISDPTV-----------GVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS--------- 68 (193)
Q Consensus 9 ~~~~~pt~-----------~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~--------- 68 (193)
.++|.||+ |+++ ..+.+ ++ +.+++|||+|+++++.+|..||++++++|||||+++
T Consensus 187 ~~~Y~PT~~Dil~~r~~TiGi~~--~~~~~-~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~ 261 (402)
T 1azs_C 187 QDDYVPSDQDLLRCRVLTSGIFE--TKFQV-DK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 261 (402)
T ss_dssp CTTCCCCHHHHHHCCCCCCSEEE--EEEEE-TT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTS
T ss_pred ccccCCccccccccccceeeeEE--EEeec-CC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECccccccccccc
Confidence 67787764 4333 44555 44 899999999999999999999999999999999999
Q ss_pred -hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCC---C------------------------CccCHHHHHHHH
Q psy38 69 -RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGV---P------------------------REVSEAEAKAFA 120 (193)
Q Consensus 69 -~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---~------------------------~~v~~~~~~~~~ 120 (193)
.++|+++..|+..+.......+.|++|||||.||..... . .....+++..|+
T Consensus 262 ~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi 341 (402)
T 1azs_C 262 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFI 341 (402)
T ss_dssp CSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHH
Confidence 889999999999998765456789999999999843100 0 000145566653
Q ss_pred -----Hh--------CCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38 121 -----SQ--------NDILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154 (193)
Q Consensus 121 -----~~--------~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~ 154 (193)
.. .++.+++|||+++.||+++|.++.+.++....
T Consensus 342 ~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~~~l 388 (402)
T 1azs_C 342 RDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHL 388 (402)
T ss_dssp HHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHHHHH
Confidence 21 35678899999999999999999998887643
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.87 E-value=7.7e-23 Score=161.92 Aligned_cols=145 Identities=21% Similarity=0.330 Sum_probs=103.7
Q ss_pred eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
+||+++| .....||++.++. .+.. ..+.+.||||+|++.|..++..+++++|++|+|||++++.+|..+..
T Consensus 179 SsLl~~l~~~~~~~~~pT~~~~~~--~~~~---~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~ 253 (329)
T 3o47_A 179 TTILYKLKLGEIVTTIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 253 (329)
T ss_dssp HHHHHHTCSSCCEEEEEETTEEEE--EEEE---TTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHH
T ss_pred HHHHHHHhCCCCCCcccccceEEE--EEec---CcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHH
Confidence 3677777 2233477765543 3444 44889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
|+..+.........|+++|+||+|+.+......+....+..++...+++++++||++|.||+++|.+|++.+.+
T Consensus 254 ~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 254 ELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred HHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 88888776545578999999999997631111111111111222245679999999999999999999987754
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.87 E-value=2.1e-22 Score=167.53 Aligned_cols=142 Identities=21% Similarity=0.342 Sum_probs=109.7
Q ss_pred eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38 2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV 77 (193)
Q Consensus 2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 77 (193)
+||+++| ...+.||+|.++. .+.+ + .+.+.+|||+|++.+..++..+++++|++|+|||++++++|..+..
T Consensus 336 SsLl~~l~~~~~~~~~~T~~~~~~--~~~~-~--~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~ 410 (497)
T 3lvq_E 336 TTILYKLKLGQSVTTIPTVGFNVE--TVTY-K--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 410 (497)
T ss_dssp HHHHHHHHHSSCCCCCCCSSEEEE--EEES-S--SCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHH
T ss_pred HHHHHHHhcCCCCCcCCccceeEE--EEEe-C--CEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHH
Confidence 3677777 4467788875444 4444 3 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHH-----HHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAF-----ASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
|+..+.........|+|+|+||+|+... ....+.... +...++++++|||++|.||+++|++|.+.+.+.
T Consensus 411 ~~~~~~~~~~~~~~p~ilv~NK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 411 ELHRIINDREMRDAIILIFANKQDLPDA-----MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSK 485 (497)
T ss_dssp HHHHHHTSGGGTTCEEEEEEECCSSSSC-----CCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC--
T ss_pred HHHHHhhhhhcCCCcEEEEEECCCCCcC-----CCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 9999987654567899999999999652 222222222 122345799999999999999999999876443
Q ss_pred h
Q psy38 153 V 153 (193)
Q Consensus 153 ~ 153 (193)
.
T Consensus 486 ~ 486 (497)
T 3lvq_E 486 L 486 (497)
T ss_dssp -
T ss_pred C
Confidence 3
No 108
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.87 E-value=1.6e-22 Score=159.03 Aligned_cols=138 Identities=17% Similarity=0.159 Sum_probs=110.1
Q ss_pred CCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCC----------ChhHHhhHHHHHHH
Q psy38 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT----------SRASFEHIPVWMME 81 (193)
Q Consensus 12 ~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~ 81 (193)
+.||+|+ ....+.+ + .+.+++|||+|+++++.+|..||++++++|+|||++ +.++|.+...|+..
T Consensus 151 r~~TiGi--~~~~~~~-~--~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~ 225 (327)
T 3ohm_A 151 RVPTTGI--IEYPFDL-Q--SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRT 225 (327)
T ss_dssp CCCCCSE--EEEEEEE-T--TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHH
T ss_pred cCceeeE--EEEEEEe-e--ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHH
Confidence 3445663 4445555 4 489999999999999999999999999999999665 56788888889999
Q ss_pred HHHhcCCCCCeEEEEeeCCCCCCCC-------------CCCccCHHHHHHHH----------HhCCCcEEEecCCCCcCH
Q psy38 82 AKRHIEPHRPVFALVGCKLDLLQSG-------------VPREVSEAEAKAFA----------SQNDILHFETSSRSGFQV 138 (193)
Q Consensus 82 i~~~~~~~~~piilv~nK~Dl~~~~-------------~~~~v~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i 138 (193)
+.......+.|++|+|||.|+.+.- ....++.+++.++. ...++.+++|||+++.||
T Consensus 226 i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV 305 (327)
T 3ohm_A 226 IITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENI 305 (327)
T ss_dssp HHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHH
T ss_pred HhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHH
Confidence 8876555679999999999985410 11246788888883 346678899999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q psy38 139 ENAFTAVTQEIYNRVQ 154 (193)
Q Consensus 139 ~e~f~~i~~~i~~~~~ 154 (193)
.++|..+.+.|++...
T Consensus 306 ~~vF~~v~~~Il~~~l 321 (327)
T 3ohm_A 306 RFVFAAVKDTILQLNL 321 (327)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhH
Confidence 9999999999988543
No 109
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.86 E-value=1.4e-21 Score=156.11 Aligned_cols=141 Identities=13% Similarity=0.108 Sum_probs=105.0
Q ss_pred cCCCCCc-----------ceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC---------
Q psy38 9 IQISDPT-----------VGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS--------- 68 (193)
Q Consensus 9 ~~~~~pt-----------~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~--------- 68 (193)
.++|.|| +|++ ...+.+ + .+.+++|||+|++.++.+|..++++++++|||||+++
T Consensus 171 ~~~Y~PT~~Dil~~r~~T~Gi~--~~~~~~-~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~ 245 (362)
T 1zcb_A 171 VPDYIPSQQDILLARRPTKGIH--EYDFEI-K--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDR 245 (362)
T ss_dssp STTCCCCHHHHHHCCCCCSSEE--EEEEEE-T--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEE
T ss_pred cCCCCCChhhhhhccCCccceE--EEEeee-C--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccc
Confidence 5667666 4543 344555 4 4889999999999999999999999999999999999
Q ss_pred -hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC-------------CCCccCHHHHHHHHH-----------hC
Q psy38 69 -RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG-------------VPREVSEAEAKAFAS-----------QN 123 (193)
Q Consensus 69 -~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-------------~~~~v~~~~~~~~~~-----------~~ 123 (193)
.++|.+...|+..+.......+.|+|||+||.||.++. ....++.+++..++. ..
T Consensus 246 ~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~ 325 (362)
T 1zcb_A 246 QTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQR 325 (362)
T ss_dssp EEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--
T ss_pred cccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCC
Confidence 78999999999999876444578999999999985310 011266788877762 34
Q ss_pred CCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38 124 DILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154 (193)
Q Consensus 124 ~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~ 154 (193)
++.+++|||+++.||+++|.++.+.+++...
T Consensus 326 ~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l 356 (362)
T 1zcb_A 326 PLYHHFTTAINTENIRLVFRDVKDTILHDNL 356 (362)
T ss_dssp CCEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEecCCchhHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999987654
No 110
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.85 E-value=2.9e-21 Score=151.08 Aligned_cols=129 Identities=17% Similarity=0.126 Sum_probs=103.9
Q ss_pred eeeeec-----c-CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChh-HHhhH
Q psy38 3 TLLYLY-----I-QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA-SFEHI 75 (193)
Q Consensus 3 sll~r~-----~-~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~ 75 (193)
||+.|| . +.|.||+| +.....+.. ++ .+++||+ +++|+.+++.+++++|++|+|||++++. +++.+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiG-d~~~~~~~~-~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l 104 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVG-DRVEYTPDE-TG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII 104 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTT-CEEEEECCC-SS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH
T ss_pred cEEEEEEcccccccCCCCCCc-cEEEEEEcC-CC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH
Confidence 577777 4 78999999 454443332 32 6899999 8999999999999999999999999987 78888
Q ss_pred HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC--CcEEEecCCCCcCHHHHHHHHHH
Q psy38 76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND--ILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
..|+..+.. .+.|+++|+||+||.++ +.+ +++.+++...+ +++++|||++|.||+++|..+..
T Consensus 105 ~~~l~~~~~----~~~piilv~NK~DL~~~---~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 105 DKFLVLAEK----NELETVMVINKMDLYDE---DDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHHH----TTCEEEEEECCGGGCCH---HHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHHH----CCCCEEEEEeHHHcCCc---hhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 999998765 25789999999999652 222 44566666666 89999999999999999998764
No 111
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.85 E-value=1.4e-21 Score=145.25 Aligned_cols=143 Identities=12% Similarity=0.164 Sum_probs=97.1
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCc-EEEEEEeeCCCcccccc-chhhhccCccEEEEEEeCCChh-HHh
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGA-RIKLQLWDTAGQERFRS-ITKSYYRNSVGALLVYDITSRA-SFE 73 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~-~~~l~l~D~~g~~~~~~-~~~~~~~~~d~~i~v~d~~~~~-s~~ 73 (193)
+||+++| ...|.++ +.++.. +.+ ++. .+.+.+|||+|++++.. ++..+++++|++|+|||+++.. ++.
T Consensus 21 Tsli~~l~~~~~~~~~~~~-~~~~~~--~~~-~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~ 96 (214)
T 2fh5_B 21 TLLFVRLLTGQYRDTQTSI-TDSSAI--YKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVK 96 (214)
T ss_dssp HHHHHHHHHSCCCCBCCCC-SCEEEE--EEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHH
T ss_pred HHHHHHHhCCCcccccCCc-ceeeEE--EEe-cCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHH
Confidence 3677777 4455544 345554 566 443 68999999999999988 7889999999999999999854 576
Q ss_pred hHHHHHHHHHHh-c-CCCCCeEEEEeeCCCCCCCCCCCcc-------------------------------CHHHHHHHH
Q psy38 74 HIPVWMMEAKRH-I-EPHRPVFALVGCKLDLLQSGVPREV-------------------------------SEAEAKAFA 120 (193)
Q Consensus 74 ~~~~~~~~i~~~-~-~~~~~piilv~nK~Dl~~~~~~~~v-------------------------------~~~~~~~~~ 120 (193)
.+..|+..+... . .....|+++|+||+|+........+ ..+++..|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 176 (214)
T 2fh5_B 97 DVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFE 176 (214)
T ss_dssp HHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCC
T ss_pred HHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcc
Confidence 676655554433 1 2346899999999999763111000 001111111
Q ss_pred Hh-C--CCcEEEecCCCC------cCHHHHHHHHHHH
Q psy38 121 SQ-N--DILHFETSSRSG------FQVENAFTAVTQE 148 (193)
Q Consensus 121 ~~-~--~~~~~~~Sa~~~------~~i~e~f~~i~~~ 148 (193)
.. . ++.|++|||++| .||+++|.+|.+.
T Consensus 177 ~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 177 FSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp GGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 1 568999999999 9999999999875
No 112
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.83 E-value=1.2e-20 Score=148.04 Aligned_cols=143 Identities=18% Similarity=0.286 Sum_probs=111.6
Q ss_pred eeeeec--------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcccc-----ccchhhhccCccEEEEEEeCCCh
Q psy38 3 TLLYLY--------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERF-----RSITKSYYRNSVGALLVYDITSR 69 (193)
Q Consensus 3 sll~r~--------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~-----~~~~~~~~~~~d~~i~v~d~~~~ 69 (193)
||+++| ...+.||++.++.. +.+ ++ .+.+.+|||+|++.+ ..++..+++++|++|+|||++++
T Consensus 18 SLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~-~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~ 93 (307)
T 3r7w_A 18 SMRSIIFSNYSAFDTRRLGATIDVEHSH--LRF-LG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVEST 93 (307)
T ss_dssp HHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEE-TT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCS
T ss_pred HHHHHHHhCCCCccccCcCCccceEEEE--EEe-CC-ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCCh
Confidence 566665 23678898876664 344 44 588999999999988 77889999999999999999999
Q ss_pred hHHhhHHHHHHHHHHhcC-CCCCeEEEEeeCCCCCCCCCCCc----cCHHHHHHHHHhCC---CcEEEecCCCCcCHHHH
Q psy38 70 ASFEHIPVWMMEAKRHIE-PHRPVFALVGCKLDLLQSGVPRE----VSEAEAKAFASQND---ILHFETSSRSGFQVENA 141 (193)
Q Consensus 70 ~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~----v~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~e~ 141 (193)
++|+++..|...+..... ..+.|+++|+||+|+.... .+. +..+++.+++..+| ++++++||++ .++.++
T Consensus 94 ~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~-~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~ 171 (307)
T 3r7w_A 94 EVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLD-KREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKA 171 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHH-HHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchh-hhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHH
Confidence 999999777555544321 3468999999999986410 122 55678888999987 7999999999 899999
Q ss_pred HHHHHHHHHH
Q psy38 142 FTAVTQEIYN 151 (193)
Q Consensus 142 f~~i~~~i~~ 151 (193)
|..++..++.
T Consensus 172 ~~~iv~~li~ 181 (307)
T 3r7w_A 172 WSQIVCSLIP 181 (307)
T ss_dssp HHHHHHTTCS
T ss_pred HHHHHHHHcC
Confidence 9999876543
No 113
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.83 E-value=2.1e-21 Score=153.31 Aligned_cols=135 Identities=15% Similarity=0.179 Sum_probs=106.0
Q ss_pred CCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCC----------ChhHHhhHHHHHHH
Q psy38 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT----------SRASFEHIPVWMME 81 (193)
Q Consensus 12 ~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~ 81 (193)
+.||+|+ ....+.+ +.+.+++|||+|+++++.+|..||++++++|+|||++ +.++|.+...|+..
T Consensus 145 ~~~TiGi--~~~~~~~---~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~ 219 (340)
T 4fid_A 145 RTKTTGI--HEYDFVV---KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKD 219 (340)
T ss_dssp CCCCCSC--EEEEEES---SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHH
T ss_pred ccceeee--EEEEEEe---eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHH
Confidence 3444663 3344444 3488999999999999999999999999999999998 67899999999999
Q ss_pred HHHhcCCCCCeEEEEeeCCCCCCCC----C--------CCccCHHHHHHHHHh---------------------------
Q psy38 82 AKRHIEPHRPVFALVGCKLDLLQSG----V--------PREVSEAEAKAFASQ--------------------------- 122 (193)
Q Consensus 82 i~~~~~~~~~piilv~nK~Dl~~~~----~--------~~~v~~~~~~~~~~~--------------------------- 122 (193)
+.......+.|++|+|||+||...- + ......+++.++...
T Consensus 220 i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (340)
T 4fid_A 220 IMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVN 299 (340)
T ss_dssp HHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------
T ss_pred HhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccC
Confidence 9886555678999999999985310 0 011245666555432
Q ss_pred CCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 123 NDILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 123 ~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
..+.+++|||+++.||..+|..+.+.|+.
T Consensus 300 ~~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 300 EKVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 23678899999999999999999999998
No 114
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.82 E-value=2.1e-20 Score=133.65 Aligned_cols=133 Identities=15% Similarity=0.110 Sum_probs=97.0
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccc------cchhhhcc--CccEEEEEEeCCCh
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFR------SITKSYYR--NSVGALLVYDITSR 69 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~------~~~~~~~~--~~d~~i~v~d~~~~ 69 (193)
||+++| ...+.|+++.+.....+.+ ++ ..+.+|||+|++++. .+...++. ++|++++|+|+++.
T Consensus 18 tL~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~ 94 (165)
T 2wji_A 18 TIFNALTGENVYIGNWPGVTVEKKEGEFEY-NG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL 94 (165)
T ss_dssp HHHHHHHCCSSSCC-----CCCCCEEEEEE-TT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH
T ss_pred HHHHHHhCCCeeccCCCCcceeeeEEEEEE-CC--cEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch
Confidence 567776 2344566556666677777 55 679999999998875 33466665 89999999999885
Q ss_pred hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 70 ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 70 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
++ ...|+..+... ..|+++|+||+|+... +.+.. ++.+++...+++++++||++|.|++++|.++.+.+
T Consensus 95 ~~---~~~~~~~~~~~----~~p~ilv~nK~Dl~~~---~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 95 ER---NLYLTLQLMEM----GANLLLALNKMDLAKS---LGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp HH---HHHHHHHHHHT----TCCEEEEEECHHHHHH---TTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred hH---hHHHHHHHHhc----CCCEEEEEEchHhccc---cChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 43 45577777652 4789999999998542 22332 35678888889999999999999999999998764
No 115
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.81 E-value=1.2e-19 Score=130.55 Aligned_cols=134 Identities=16% Similarity=0.098 Sum_probs=98.3
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh---hHHhh
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR---ASFEH 74 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~ 74 (193)
||+++| ...+.|+++.++....+.+ ++ ..+.+|||+|++++..++..++..+|++|+|||++++ .+++.
T Consensus 23 sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~ 99 (178)
T 2lkc_A 23 TLLDAIRHSKVTEQEAGGITQHIGAYQVTV-ND--KKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEA 99 (178)
T ss_dssp HHHHHHHTTCSSCSSCCSSSTTCCCCEEEE-TT--EEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHH
T ss_pred HHHHHHhCCccccCCCCceeEeeeEEEEEe-CC--ceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHH
Confidence 567776 4456677767777777777 66 4577999999999999999999999999999999883 33332
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh-------CC--CcEEEecCCCCcCHHHHHHHH
Q psy38 75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-------ND--ILHFETSSRSGFQVENAFTAV 145 (193)
Q Consensus 75 ~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-------~~--~~~~~~Sa~~~~~i~e~f~~i 145 (193)
+ ..+. ....|+++|+||+|+... ..+........ .+ ++++++||++|.|++++|.+|
T Consensus 100 l----~~~~----~~~~p~ilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 165 (178)
T 2lkc_A 100 I----NHAK----AANVPIIVAINKMDKPEA------NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMI 165 (178)
T ss_dssp H----HHHG----GGSCCEEEEEETTTSSCS------CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHH
T ss_pred H----HHHH----hCCCCEEEEEECccCCcC------CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHH
Confidence 2 2222 235789999999999652 22233222222 22 589999999999999999999
Q ss_pred HHHHHHHh
Q psy38 146 TQEIYNRV 153 (193)
Q Consensus 146 ~~~i~~~~ 153 (193)
++.+....
T Consensus 166 ~~~~~~~~ 173 (178)
T 2lkc_A 166 LLVSEMEE 173 (178)
T ss_dssp HHHHHHTT
T ss_pred HHhhhhhc
Confidence 98776543
No 116
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.79 E-value=1.4e-18 Score=130.54 Aligned_cols=127 Identities=17% Similarity=0.093 Sum_probs=92.6
Q ss_pred eEEEEEEEecCCcEEEEEEeeCCCcc------c----cccchhhhccCccEEEEEEeCCChhHHhh--HHHHHHHHHHhc
Q psy38 19 DFFARLVTMRDGARIKLQLWDTAGQE------R----FRSITKSYYRNSVGALLVYDITSRASFEH--IPVWMMEAKRHI 86 (193)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~l~D~~g~~------~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~ 86 (193)
++....+.. ++ +.+.+|||+|+. . +.. +..++..+|++|+|||++++.+|.. ...|+..+...
T Consensus 65 ~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~- 139 (228)
T 2qu8_A 65 NLYVGHFDH-KL--NKYQIIDTPGLLDRAFENRNTIEMTT-ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV- 139 (228)
T ss_dssp CEEEEEEEE-TT--EEEEEEECTTTTTSCGGGCCHHHHHH-HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-
T ss_pred eeeeeeeec-CC--CeEEEEECCCCcCcccchhhhHHHHH-HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-
Confidence 344444444 33 789999999983 3 221 2345788999999999999888762 23566666543
Q ss_pred CCCCCeEEEEeeCCCCCCCCCCCccCHH---HHHHHHHhCC--CcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38 87 EPHRPVFALVGCKLDLLQSGVPREVSEA---EAKAFASQND--ILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154 (193)
Q Consensus 87 ~~~~~piilv~nK~Dl~~~~~~~~v~~~---~~~~~~~~~~--~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~ 154 (193)
....|+++|+||+|+.. .+.+... ....++...+ +++++|||++|.||+++|.+|++.+.+...
T Consensus 140 -~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~ 208 (228)
T 2qu8_A 140 -FSNKSIVIGFNKIDKCN---MDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQA 208 (228)
T ss_dssp -C-CCCEEEEEECGGGCC-----CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred -hcCCcEEEEEeCcccCC---chhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHHH
Confidence 23689999999999976 3445543 4567777777 899999999999999999999999887654
No 117
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.79 E-value=1.7e-19 Score=151.30 Aligned_cols=142 Identities=14% Similarity=0.180 Sum_probs=107.2
Q ss_pred eeeeec-----cCCCCCcceeeEEEEE------EEec-CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChh
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARL------VTMR-DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA 70 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~------~~~~-~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 70 (193)
||++++ ...+.||+|.++..+. +.+. ++..+.+.+||++|++.+..+...+++++|++|+|||+++
T Consensus 56 SLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~-- 133 (535)
T 3dpu_A 56 SLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRT-- 133 (535)
T ss_dssp HHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGG--
T ss_pred HHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCC--
Confidence 567776 4678899998888663 2221 3446899999999999999999999999999999999875
Q ss_pred HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 71 SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 71 s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
++.+..|+..+..+.. +.|+++|+||+|+.. .+.+..+++.+++...+++++++||++|.||+++|.++.+.+.
T Consensus 134 -~~~~~~~~~~l~~~~~--~~pvilV~NK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~ 207 (535)
T 3dpu_A 134 -DSNKHYWLRHIEKYGG--KSPVIVVMNKIDENP---SYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVL 207 (535)
T ss_dssp -GGGHHHHHHHHHHHSS--SCCEEEEECCTTTCT---TCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHT
T ss_pred -chhHHHHHHHHHHhCC--CCCEEEEEECCCccc---ccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHh
Confidence 4677889999988752 589999999999976 4667888888999989999999999999999999999998776
Q ss_pred HH
Q psy38 151 NR 152 (193)
Q Consensus 151 ~~ 152 (193)
..
T Consensus 208 ~~ 209 (535)
T 3dpu_A 208 HP 209 (535)
T ss_dssp CT
T ss_pred cc
Confidence 53
No 118
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.77 E-value=1.5e-19 Score=131.44 Aligned_cols=139 Identities=15% Similarity=0.148 Sum_probs=102.7
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCC-----------ccccccchhhhccC-ccEEEEEE
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAG-----------QERFRSITKSYYRN-SVGALLVY 64 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g-----------~~~~~~~~~~~~~~-~d~~i~v~ 64 (193)
+||+++| ...+.|++. +....+.+ + .+.+|||+| ++.+..++..++++ +++++++|
T Consensus 15 Ssli~~l~~~~~~~~~~~~~t--~~~~~~~~-~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 87 (190)
T 2cxx_A 15 STLIYRLTGKKVRRGKRPGVT--RKIIEIEW-K----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAV 87 (190)
T ss_dssp HHHHHHHHSCCCSSSSSTTCT--TSCEEEEE-T----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEE
T ss_pred HHHHHHHhCcCCccCCCCCcc--ceeEEEec-C----CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEE
Confidence 3667776 345566553 33344444 3 588999999 67777888888887 88888888
Q ss_pred eCCChhHHhhH-HHHHHH--------HHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCc-------EE
Q psy38 65 DITSRASFEHI-PVWMME--------AKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL-------HF 128 (193)
Q Consensus 65 d~~~~~s~~~~-~~~~~~--------i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~-------~~ 128 (193)
++.+..++.++ ..|... +.........|+++|+||+|+... . .+.+.+++...+++ ++
T Consensus 88 ~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~---~~~~~~~~~~~~~~~~~~~~~~~ 161 (190)
T 2cxx_A 88 LVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN---V---QEVINFLAEKFEVPLSEIDKVFI 161 (190)
T ss_dssp EEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSC---H---HHHHHHHHHHHTCCGGGHHHHEE
T ss_pred EEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCc---H---HHHHHHHHHHhhhhhhccCCcEE
Confidence 88888888887 567653 333222346899999999999662 2 56677888887764 79
Q ss_pred EecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 129 ETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 129 ~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
+|||++|.|++++|.++++.+.+..
T Consensus 162 ~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 162 PISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred EEecCCCCCHHHHHHHHHHhcchhh
Confidence 9999999999999999999886643
No 119
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.76 E-value=5.5e-19 Score=128.37 Aligned_cols=135 Identities=16% Similarity=0.135 Sum_probs=102.5
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccc------cchhhhcc--CccEEEEEEeCCCh
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFR------SITKSYYR--NSVGALLVYDITSR 69 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~------~~~~~~~~--~~d~~i~v~d~~~~ 69 (193)
||+++| ...+.|+++.+.....+.+ ++ ..+.+|||+|++.+. .++..++. .++++++++|.++
T Consensus 22 tL~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~- 97 (188)
T 2wjg_A 22 TIFNALTGENVYIGNWPGVTVEKKEGEFEY-NG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA- 97 (188)
T ss_dssp HHHHHHHTTCEEEEECTTSCCEEEEEEEEE-TT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG-
T ss_pred HHHHHHhCCCccccCCCCeeccceEEEEEe-CC--cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh-
Confidence 566666 2244566666777777777 55 789999999998875 34566665 5999999999875
Q ss_pred hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 70 ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 70 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
++....|+..+.. ...|+++|+||+|+... +.+. ..+.+++...+++++++||+++.|++++|.++++.+
T Consensus 98 --~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~---~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 167 (188)
T 2wjg_A 98 --LERNLYLTLQLME----MGANLLLALNKMDLAKS---LGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 167 (188)
T ss_dssp --HHHHHHHHHHHHT----TTCCEEEEEECHHHHHH---TTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHh----cCCCEEEEEEhhhcccc---ccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHH
Confidence 5566778877765 25789999999998542 2233 346678888889999999999999999999999877
Q ss_pred HH
Q psy38 150 YN 151 (193)
Q Consensus 150 ~~ 151 (193)
..
T Consensus 168 ~~ 169 (188)
T 2wjg_A 168 KD 169 (188)
T ss_dssp TT
T ss_pred Hh
Confidence 54
No 120
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.76 E-value=5e-19 Score=125.23 Aligned_cols=131 Identities=18% Similarity=0.113 Sum_probs=88.8
Q ss_pred eeeeecc------CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccc-------cccchhhhccCccEEEEEEeCCCh
Q psy38 3 TLLYLYI------QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQER-------FRSITKSYYRNSVGALLVYDITSR 69 (193)
Q Consensus 3 sll~r~~------~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-------~~~~~~~~~~~~d~~i~v~d~~~~ 69 (193)
||+++|. ....|+...+.....+.. ++ ..+.+|||+|+.. +...+..+++.+|++|+|+|++++
T Consensus 16 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~ 92 (161)
T 2dyk_A 16 SLFNRLLKKRSAVVADVPGVTRDLKEGVVET-DR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAE 92 (161)
T ss_dssp HHHHHHHHCCC-----------CCEEEEEEE-TT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSC
T ss_pred HHHHHHhCCCeeeccCCCCceecceEEEEEe-CC--ceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCc
Confidence 5677761 122333445666677777 66 4788999999887 344556788999999999999985
Q ss_pred hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHH
Q psy38 70 ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 70 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
.+. ...|+..+... ...|+++|+||+|+.+. .+++.+++ ..++ +++++||++|.|++++|.++++.
T Consensus 93 ~~~--~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~-------~~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 93 LTQ--ADYEVAEYLRR---KGKPVILVATKVDDPKH-------ELYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWER 159 (161)
T ss_dssp CCH--HHHHHHHHHHH---HTCCEEEEEECCCSGGG-------GGGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHH
T ss_pred ccH--hHHHHHHHHHh---cCCCEEEEEECcccccc-------hHhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHh
Confidence 332 22333333332 24789999999999652 13344555 5677 89999999999999999999875
Q ss_pred H
Q psy38 149 I 149 (193)
Q Consensus 149 i 149 (193)
+
T Consensus 160 l 160 (161)
T 2dyk_A 160 L 160 (161)
T ss_dssp C
T ss_pred C
Confidence 3
No 121
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.76 E-value=6.1e-19 Score=126.99 Aligned_cols=132 Identities=18% Similarity=0.187 Sum_probs=96.4
Q ss_pred eeeeeccC------CCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccc--------hhhhccCccEEEEEEeCCC
Q psy38 3 TLLYLYIQ------ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSI--------TKSYYRNSVGALLVYDITS 68 (193)
Q Consensus 3 sll~r~~~------~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~--------~~~~~~~~d~~i~v~d~~~ 68 (193)
||+++|.. ...|+.+.++....+.+ ++ ..+.+|||+|++++... ...+++++|++++|||+++
T Consensus 19 tLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~ 95 (172)
T 2gj8_A 19 SLLNALAGREAAIVTDIAGTTRDVLREHIHI-DG--MPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTT 95 (172)
T ss_dssp HHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE-TT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTT
T ss_pred HHHHHHhCCCcceeeCCCCceeceeeEEEEE-CC--eEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 56777711 12233446777788888 76 45789999998754221 1246889999999999999
Q ss_pred hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 69 RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 69 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
+.+++ ...|+..+.... ....|+++|+||+|+... . . .++...+++++++||++|.||+++|.+|.+.
T Consensus 96 ~~s~~-~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~---~-~------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 163 (172)
T 2gj8_A 96 TDAVD-PAEIWPEFIARL-PAKLPITVVRNKADITGE---T-L------GMSEVNGHALIRLSARTGEGVDVLRNHLKQS 163 (172)
T ss_dssp CCCCS-HHHHCHHHHHHS-CTTCCEEEEEECHHHHCC---C-C------EEEEETTEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHhc-ccCCCEEEEEECccCCcc---h-h------hhhhccCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 88876 457888877654 346899999999998542 1 1 1233356789999999999999999999886
Q ss_pred H
Q psy38 149 I 149 (193)
Q Consensus 149 i 149 (193)
+
T Consensus 164 ~ 164 (172)
T 2gj8_A 164 M 164 (172)
T ss_dssp C
T ss_pred h
Confidence 5
No 122
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.75 E-value=1.5e-18 Score=126.74 Aligned_cols=135 Identities=12% Similarity=0.150 Sum_probs=89.2
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCC----------ccccccchhhhccCc---cEEEEEE
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAG----------QERFRSITKSYYRNS---VGALLVY 64 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g----------~~~~~~~~~~~~~~~---d~~i~v~ 64 (193)
||+++| ...+.++.|.........+ ++ .+.+|||+| ++.+..++..+++.+ |++++|+
T Consensus 38 sli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 113 (195)
T 1svi_A 38 SFINSLINRKNLARTSSKPGKTQTLNFYII-ND---ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIV 113 (195)
T ss_dssp HHHHHHHTC-------------CCEEEEEE-TT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHhCCCCccccCCCCCceeeEEEEEE-CC---cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEE
Confidence 566776 2345666665555555555 44 489999999 777777888888877 9999999
Q ss_pred eCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCH--HHHHH-HHHhCCCcEEEecCCCCcCHHHH
Q psy38 65 DITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE--AEAKA-FASQNDILHFETSSRSGFQVENA 141 (193)
Q Consensus 65 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~--~~~~~-~~~~~~~~~~~~Sa~~~~~i~e~ 141 (193)
|++++.++.+.. ++..+.. ...|+++|+||+|+.. .+.+.. ++..+ ++...+++++++||++|.|++++
T Consensus 114 d~~~~~~~~~~~-~~~~~~~----~~~p~i~v~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 185 (195)
T 1svi_A 114 DLRHAPSNDDVQ-MYEFLKY----YGIPVIVIATKADKIP---KGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEA 185 (195)
T ss_dssp ETTSCCCHHHHH-HHHHHHH----TTCCEEEEEECGGGSC---GGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHH
T ss_pred ECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCC---hHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHH
Confidence 999877666542 1222222 3478999999999966 232322 23333 44345679999999999999999
Q ss_pred HHHHHHHH
Q psy38 142 FTAVTQEI 149 (193)
Q Consensus 142 f~~i~~~i 149 (193)
|.+|.+.+
T Consensus 186 ~~~l~~~l 193 (195)
T 1svi_A 186 WGAIKKMI 193 (195)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998865
No 123
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.73 E-value=1.2e-17 Score=121.72 Aligned_cols=137 Identities=19% Similarity=0.221 Sum_probs=96.4
Q ss_pred eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCC----------ccccccchhhhccCc---cEEEEEE
Q psy38 2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAG----------QERFRSITKSYYRNS---VGALLVY 64 (193)
Q Consensus 2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g----------~~~~~~~~~~~~~~~---d~~i~v~ 64 (193)
+||+++| ...+.++.|.+........ +. .+.+|||+| ++.+..++..+++.+ +++++|+
T Consensus 37 Ssli~~l~~~~~~~~~~~~~~t~~~~~~~~-~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~ 112 (195)
T 3pqc_A 37 SSLLNALFNRKIAFVSKTPGKTRSINFYLV-NS---KYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLV 112 (195)
T ss_dssp HHHHHHHHTSCCSCCCSSCCCCCCEEEEEE-TT---TEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHcCccccccCCCCCccCeEEEEE-CC---cEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEe
Confidence 3677777 3455666665554444444 32 367999999 667777788888776 9999999
Q ss_pred eCCChh--HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHH
Q psy38 65 DITSRA--SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND-ILHFETSSRSGFQVENA 141 (193)
Q Consensus 65 d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~ 141 (193)
|+++.. ....+..|+... ..|+++|+||+|+.... ......+++.+++...+ ++++++||++|.||+++
T Consensus 113 d~~~~~~~~~~~~~~~~~~~-------~~p~i~v~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 184 (195)
T 3pqc_A 113 DGRIPPQDSDLMMVEWMKSL-------NIPFTIVLTKMDKVKMS-ERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISEL 184 (195)
T ss_dssp ETTSCCCHHHHHHHHHHHHT-------TCCEEEEEECGGGSCGG-GHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHc-------CCCEEEEEEChhcCChH-HHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHH
Confidence 998753 333334444332 47899999999996421 12334456666776644 79999999999999999
Q ss_pred HHHHHHHHH
Q psy38 142 FTAVTQEIY 150 (193)
Q Consensus 142 f~~i~~~i~ 150 (193)
|+++.+.+.
T Consensus 185 ~~~l~~~l~ 193 (195)
T 3pqc_A 185 LDLISTLLK 193 (195)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999998764
No 124
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.71 E-value=2.2e-17 Score=126.45 Aligned_cols=134 Identities=16% Similarity=0.121 Sum_probs=97.5
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccc------hhhhc--cCccEEEEEEeCCCh
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSI------TKSYY--RNSVGALLVYDITSR 69 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~------~~~~~--~~~d~~i~v~d~~~~ 69 (193)
||+|+| .....|.+..+.....+.. ++ ..+.+|||+|+..+... .+.++ .++|++|+|+|+++.
T Consensus 20 sL~n~l~g~~~~~~~~pg~tv~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~ 96 (258)
T 3a1s_A 20 SLFNALTGTKQYVANWPGVTVEKKEGVFTY-KG--YTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP 96 (258)
T ss_dssp HHHHHHHTTCEEEEECTTSCCEEEEEEEEE-TT--EEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC
T ss_pred HHHHHHHCCCCcccCCCCceEEEEEEEEEE-CC--eEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch
Confidence 566776 1223344444555555554 44 78999999999887653 25565 589999999999986
Q ss_pred hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 70 ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 70 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
++. ..|..++... ..|+++|+||+|+... +.+.. +...+++.++++++++||++|.|++++|.++.+.+
T Consensus 97 ~~~---~~~~~~l~~~----~~pvilv~NK~Dl~~~---~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 97 EQS---LYLLLEILEM----EKKVILAMTAIDEAKK---TGMKI-DRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp HHH---HHHHHHHHTT----TCCEEEEEECHHHHHH---TTCCB-CHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hhH---HHHHHHHHhc----CCCEEEEEECcCCCCc---cchHH-HHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHh
Confidence 543 3466666653 4789999999998542 23332 36678888899999999999999999999998865
Q ss_pred H
Q psy38 150 Y 150 (193)
Q Consensus 150 ~ 150 (193)
.
T Consensus 166 ~ 166 (258)
T 3a1s_A 166 Q 166 (258)
T ss_dssp H
T ss_pred h
Confidence 3
No 125
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.70 E-value=3.8e-17 Score=128.12 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=91.9
Q ss_pred EEEEEEeeCCCccccc----------cchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCC
Q psy38 32 RIKLQLWDTAGQERFR----------SITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLD 101 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 101 (193)
...+.||||+|+..+. .....+++++|++++|+|+++..++.+...|+..+... ..|+++|+||+|
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~----~~pvilV~NK~D 133 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL----NKPVIVVINKID 133 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG----CCCEEEEEECGG
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc----CCCEEEEEECcc
Confidence 4789999999986544 45567889999999999999988888887788777763 478999999999
Q ss_pred CCCCCCCCccCHHHHHHHHHhCC--CcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 102 LLQSGVPREVSEAEAKAFASQND--ILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 102 l~~~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
+.. ...........+....+ .+++++||++|.|++++|+++.+.+.
T Consensus 134 l~~---~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 134 KIG---PAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp GSS---SGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCC---CHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 973 24455666777887775 68999999999999999999988663
No 126
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.69 E-value=8.5e-18 Score=128.54 Aligned_cols=132 Identities=11% Similarity=-0.005 Sum_probs=96.4
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcccccc----------chhhhc--cCccEEEEEEe
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRS----------ITKSYY--RNSVGALLVYD 65 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~----------~~~~~~--~~~d~~i~v~d 65 (193)
||+|++ .....|+++.+.....+.+ ++ ..+.+|||+|...+.. +.+.++ .++|++|+|+|
T Consensus 16 TL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~-~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvD 92 (256)
T 3iby_A 16 TLFNALTNANQRVGNWPGVTVEKKTGEFLL-GE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVID 92 (256)
T ss_dssp HHHHHHHTTSEEEEECTTSSSEEEEEEEEE-TT--EEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEE
T ss_pred HHHHHHHCCCCCccCCCCceEEEEEEEEEE-CC--eEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEee
Confidence 566666 2223455566777778877 66 4789999999987764 456677 89999999999
Q ss_pred CCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHH
Q psy38 66 ITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAV 145 (193)
Q Consensus 66 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i 145 (193)
+++.+++..+..| +.. ...|+++|+||+|+... +.+.. ....++...+++++++||++|.|++++|.++
T Consensus 93 as~~~~~~~l~~~---l~~----~~~pvilv~NK~Dl~~~---~~~~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i 161 (256)
T 3iby_A 93 ACHLERHLYLTSQ---LFE----LGKPVVVALNMMDIAEH---RGISI-DTEKLESLLGCSVIPIQAHKNIGIPALQQSL 161 (256)
T ss_dssp GGGHHHHHHHHHH---HTT----SCSCEEEEEECHHHHHH---TTCEE-CHHHHHHHHCSCEEECBGGGTBSHHHHHHHH
T ss_pred CCCchhHHHHHHH---HHH----cCCCEEEEEEChhcCCc---CCcHH-HHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence 9987665544333 322 25799999999998542 22211 2345777789999999999999999999999
Q ss_pred HHH
Q psy38 146 TQE 148 (193)
Q Consensus 146 ~~~ 148 (193)
.+.
T Consensus 162 ~~~ 164 (256)
T 3iby_A 162 LHC 164 (256)
T ss_dssp HTC
T ss_pred Hhh
Confidence 875
No 127
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.68 E-value=1.6e-17 Score=127.98 Aligned_cols=118 Identities=11% Similarity=0.068 Sum_probs=88.9
Q ss_pred eEEEEEEEecCCcEEEEEEeeCCCccccc------cchhhhcc--CccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCC
Q psy38 19 DFFARLVTMRDGARIKLQLWDTAGQERFR------SITKSYYR--NSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHR 90 (193)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~l~D~~g~~~~~------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 90 (193)
++..+...+ ++ ...+.+|||+|+.++. .+.+.++. ++|++|+|+|+++.+++ ..|..++.+. .
T Consensus 37 tv~~~~~~~-~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~~----~ 107 (272)
T 3b1v_A 37 TVERKSGLV-KK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIET----G 107 (272)
T ss_dssp CCSCEEEEC-TT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHHT----C
T ss_pred cEEEEEEEE-ec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHhc----C
Confidence 333444455 54 5679999999998876 34566775 69999999999986543 4566666652 4
Q ss_pred CeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 91 PVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 91 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
.|+++|+||+|+... +.+. .....++..++++++++||++|.|++++|.++++.+
T Consensus 108 ~p~ilv~NK~Dl~~~---~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 108 IPVTIALNMIDVLDG---QGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp SCEEEEEECHHHHHH---TTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred CCEEEEEEChhhCCc---CCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 789999999998542 2233 345678888899999999999999999999998754
No 128
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.68 E-value=2.7e-16 Score=129.74 Aligned_cols=136 Identities=16% Similarity=0.099 Sum_probs=82.8
Q ss_pred eeeeecc------CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccch--------hhhccCccEEEEEEeCCC
Q psy38 3 TLLYLYI------QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSIT--------KSYYRNSVGALLVYDITS 68 (193)
Q Consensus 3 sll~r~~------~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~--------~~~~~~~d~~i~v~d~~~ 68 (193)
||+|+|. ....|++..++....+.+ +| +.+.+|||+|+.++...+ ..+++++|++++|+|+++
T Consensus 248 SLln~L~~~~~a~vs~~~gtT~d~~~~~i~~-~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~ 324 (476)
T 3gee_A 248 TLLNTLLGQERAIVSHMPGTTRDYIEECFIH-DK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGT 324 (476)
T ss_dssp HHHHHCC------------------CEEEEE-TT--EEEEEEC--------------------CCCSSCSEEEEEEETTT
T ss_pred HHHHHHhCCCCcccCCCCCceEEEEEEEEEE-CC--eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCC
Confidence 6777771 122344446777788888 77 679999999998765443 347889999999999999
Q ss_pred hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 69 RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 69 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
+.+++.+..+..-+. ... ..|+++|+||+|+... ..+ ...++......+++++||++|.||+++|.+|.+.
T Consensus 325 ~~s~~~~~~~~~~l~-~l~--~~piIvV~NK~Dl~~~---~~~---~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~ 395 (476)
T 3gee_A 325 ERLDDELTEIRELKA-AHP--AAKFLTVANKLDRAAN---ADA---LIRAIADGTGTEVIGISALNGDGIDTLKQHMGDL 395 (476)
T ss_dssp CSSGGGHHHHHHHHH-HCT--TSEEEEEEECTTSCTT---THH---HHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHH
T ss_pred CcchhhhHHHHHHHH-hcC--CCCEEEEEECcCCCCc---cch---hHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHH
Confidence 888765433333222 222 5899999999999662 222 2233444323689999999999999999999987
Q ss_pred HH
Q psy38 149 IY 150 (193)
Q Consensus 149 i~ 150 (193)
+.
T Consensus 396 ~~ 397 (476)
T 3gee_A 396 VK 397 (476)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 129
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.68 E-value=4.9e-17 Score=133.89 Aligned_cols=140 Identities=15% Similarity=0.054 Sum_probs=98.5
Q ss_pred eeeeec------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCC----------ccccccchh-hhccCccEEEEEEe
Q psy38 3 TLLYLY------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAG----------QERFRSITK-SYYRNSVGALLVYD 65 (193)
Q Consensus 3 sll~r~------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g----------~~~~~~~~~-~~~~~~d~~i~v~d 65 (193)
||+++| .....|+++.+.....+.. ++. .+.+|||+| ++.|..++. .+++.+|++|+|+|
T Consensus 210 slin~l~~~~~~~~~~~~gtt~~~~~~~~~~-~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD 286 (456)
T 4dcu_A 210 SLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-NQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLD 286 (456)
T ss_dssp HHHHHHHTSTTEEECC------CTTSEEEEE-TTE--EEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEE
T ss_pred HHHHHHhCCCccccCCCCCeEEEEEEEEEEE-CCc--eEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEe
Confidence 567776 1223344446776677777 664 788999999 677766655 37889999999999
Q ss_pred CCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC-----CCcEEEecCCCCcCHHH
Q psy38 66 ITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-----DILHFETSSRSGFQVEN 140 (193)
Q Consensus 66 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~e 140 (193)
+++..+. ....|+..+.. ...|+++|+||+|+.+ .+.+..++..+.+... +++++++||++|.||++
T Consensus 287 ~~~~~~~-~~~~~~~~~~~----~~~~~ilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~ 358 (456)
T 4dcu_A 287 GEEGIIE-QDKRIAGYAHE----AGKAVVIVVNKWDAVD---KDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHT 358 (456)
T ss_dssp TTTCCCH-HHHHHHHHHHH----TTCEEEEEEECGGGSC---CCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGG
T ss_pred CCCCcCH-HHHHHHHHHHH----cCCCEEEEEEChhcCC---CchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHH
Confidence 9874332 22345555544 2489999999999976 3556666666666553 57999999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy38 141 AFTAVTQEIYNRV 153 (193)
Q Consensus 141 ~f~~i~~~i~~~~ 153 (193)
+|.++.+.+....
T Consensus 359 l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 359 LMPAIIKASENHS 371 (456)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999998776543
No 130
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.67 E-value=7.1e-18 Score=125.43 Aligned_cols=104 Identities=14% Similarity=0.162 Sum_probs=78.7
Q ss_pred cEEEEEEeeCCCccccccchhhhccC----ccEEEEEEeCC-ChhHHhhHHHHHHHHHHhc---CCCCCeEEEEeeCCCC
Q psy38 31 ARIKLQLWDTAGQERFRSITKSYYRN----SVGALLVYDIT-SRASFEHIPVWMMEAKRHI---EPHRPVFALVGCKLDL 102 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~~~~~~~~~~----~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl 102 (193)
..+.+.+|||+|++.++..+..+++. +|++|+|||++ ++.+|..+..|+..+.... .....|+++|+||+|+
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 132 (218)
T 1nrj_B 53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 132 (218)
T ss_dssp GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence 44678999999999999888888887 89999999999 8889999999998887753 2356899999999999
Q ss_pred CCCCCCCccC------HHHHHHHHHhCCCcEEEecCCCCcC
Q psy38 103 LQSGVPREVS------EAEAKAFASQNDILHFETSSRSGFQ 137 (193)
Q Consensus 103 ~~~~~~~~v~------~~~~~~~~~~~~~~~~~~Sa~~~~~ 137 (193)
... +.+. .+++..++...++.++++||++|.+
T Consensus 133 ~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 133 FTA---RPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp TTC---CCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred ccc---CCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 763 3333 4556677777778999999998765
No 131
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.65 E-value=1.8e-16 Score=128.96 Aligned_cols=135 Identities=12% Similarity=0.083 Sum_probs=97.2
Q ss_pred eeeeeecc------CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccc-------hhhhccCccEEEEEEeCCC
Q psy38 2 VTLLYLYI------QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSI-------TKSYYRNSVGALLVYDITS 68 (193)
Q Consensus 2 ~sll~r~~------~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~-------~~~~~~~~d~~i~v~d~~~ 68 (193)
+||+++|. ....+.+..+.....+.+ .+. ..+.+|||+|++.+..+ ...++.++|++|+|+|++.
T Consensus 48 STLin~L~~~~~~~~~~~~gtT~d~~~~~~~~-~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~ 125 (423)
T 3qq5_A 48 SSFMNALVGQNVSIVSDYAGTTTDPVYKSMEL-HPI-GPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAP 125 (423)
T ss_dssp TTTTTSSCC-------------CCCCEEEEEE-TTT-EEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSC
T ss_pred HHHHHHHHcCCCCccCCCCCeeeeeEEEEEEE-CCC-CeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCC
Confidence 36777771 122233335666677776 443 37899999999887655 3458889999999999843
Q ss_pred hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 69 RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 69 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
.+ ....|+..+... +.|+++|+||+|+... ... +...+++...+++++++||++|.|++++|++|.+.
T Consensus 126 ~~---~~~~~l~~l~~~----~~piIvV~NK~Dl~~~---~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~ 193 (423)
T 3qq5_A 126 TP---YEDDVVNLFKEM----EIPFVVVVNKIDVLGE---KAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEI 193 (423)
T ss_dssp CH---HHHHHHHHHHHT----TCCEEEECCCCTTTTC---CCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHH
T ss_pred hH---HHHHHHHHHHhc----CCCEEEEEeCcCCCCc---cHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 32 335577777664 4789999999999763 222 56667777788999999999999999999999987
Q ss_pred HH
Q psy38 149 IY 150 (193)
Q Consensus 149 i~ 150 (193)
+.
T Consensus 194 l~ 195 (423)
T 3qq5_A 194 LP 195 (423)
T ss_dssp SC
T ss_pred hh
Confidence 73
No 132
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.65 E-value=1.3e-16 Score=130.74 Aligned_cols=139 Identities=15% Similarity=0.075 Sum_probs=95.1
Q ss_pred eeeeecc------CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCc----------cccccchh-hhccCccEEEEEEe
Q psy38 3 TLLYLYI------QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQ----------ERFRSITK-SYYRNSVGALLVYD 65 (193)
Q Consensus 3 sll~r~~------~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~----------~~~~~~~~-~~~~~~d~~i~v~d 65 (193)
||+|++. ....|+++.+.....+.. ++. .+.+|||+|+ +.|..++. .+++.+|++++|+|
T Consensus 190 SLin~l~~~~~~~~~~~~gtT~d~~~~~~~~-~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D 266 (436)
T 2hjg_A 190 SLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-NQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLD 266 (436)
T ss_dssp HHHHHHHTSTTEEEC---------CCEEEEE-TTE--EEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEE
T ss_pred HHHHHHhCCCceeecCCCCceeeeeEEEEEE-CCe--EEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEc
Confidence 6777771 222344446777777777 764 4889999998 44444433 47889999999999
Q ss_pred CCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHH-----HHHHhCCCcEEEecCCCCcCHHH
Q psy38 66 ITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAK-----AFASQNDILHFETSSRSGFQVEN 140 (193)
Q Consensus 66 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~-----~~~~~~~~~~~~~Sa~~~~~i~e 140 (193)
++++.++++. .|+..+... ..|+++|+||+|+.+. +....++.. .++...+++++++||++|.|+++
T Consensus 267 ~~~~~s~~~~-~~~~~~~~~----~~~iiiv~NK~Dl~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~ 338 (436)
T 2hjg_A 267 GEEGIIEQDK-RIAGYAHEA----GKAVVIVVNKWDAVDK---DESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHT 338 (436)
T ss_dssp TTTCCCHHHH-HHHHHHHHT----TCEEEEEEECGGGSCC---CTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGG
T ss_pred CCcCCcHHHH-HHHHHHHHc----CCcEEEEEECccCCCc---chHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHH
Confidence 9998887775 577666542 4899999999999762 333333322 22333467999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy38 141 AFTAVTQEIYNR 152 (193)
Q Consensus 141 ~f~~i~~~i~~~ 152 (193)
+|.++.+.+...
T Consensus 339 l~~~i~~~~~~~ 350 (436)
T 2hjg_A 339 LMPAIIKASENH 350 (436)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999877653
No 133
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.64 E-value=4.9e-17 Score=125.50 Aligned_cols=133 Identities=14% Similarity=0.044 Sum_probs=93.9
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccc----------hhhhc--cCccEEEEEEe
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSI----------TKSYY--RNSVGALLVYD 65 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~----------~~~~~--~~~d~~i~v~d 65 (193)
||+|+| .....|++..+.....+.. ++ ..+.+|||+|+..+... ...++ .++|++|+|+|
T Consensus 18 TLin~l~g~~~~v~~~~g~t~~~~~~~~~~-~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD 94 (274)
T 3i8s_A 18 TLFNQLTGSRQRVGNWAGVTVERKEGQFST-TD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVD 94 (274)
T ss_dssp HHHHHHHTTCEEEEECTTSSSEEEEEEEEC-SS--CEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEE
T ss_pred HHHHHHhCCCcccCCCCCeeEEEEEEEEEe-CC--CceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEec
Confidence 567776 2233455556777777776 55 45778999999876631 23333 79999999999
Q ss_pred CCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHH
Q psy38 66 ITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAV 145 (193)
Q Consensus 66 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i 145 (193)
+++.++... |...+... +.|+++|+||+|+... +.+. .....++...+++++++||++|.|++++|.++
T Consensus 95 ~~~~~~~~~---~~~~l~~~----~~p~ivv~NK~Dl~~~---~~~~-~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i 163 (274)
T 3i8s_A 95 ASNLERNLY---LTLQLLEL----GIPCIVALNMLDIAEK---QNIR-IEIDALSARLGCPVIPLVSTRGRGIEALKLAI 163 (274)
T ss_dssp GGGHHHHHH---HHHHHHHH----TCCEEEEEECHHHHHH---TTEE-ECHHHHHHHHTSCEEECCCGGGHHHHHHHHHH
T ss_pred CCChHHHHH---HHHHHHhc----CCCEEEEEECccchhh---hhHH-HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHH
Confidence 998665444 44444443 4789999999998542 2221 12456777788999999999999999999998
Q ss_pred HHHH
Q psy38 146 TQEI 149 (193)
Q Consensus 146 ~~~i 149 (193)
.+.+
T Consensus 164 ~~~~ 167 (274)
T 3i8s_A 164 DRYK 167 (274)
T ss_dssp HTCC
T ss_pred HHHH
Confidence 7654
No 134
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.64 E-value=1.3e-16 Score=118.96 Aligned_cols=142 Identities=13% Similarity=0.071 Sum_probs=87.7
Q ss_pred eeeeeccC-----CCCCcceeeEEEEEEEecCCcEEEEEEeeCCCc----------cccccchhhhccC---ccEEEEEE
Q psy38 3 TLLYLYIQ-----ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQ----------ERFRSITKSYYRN---SVGALLVY 64 (193)
Q Consensus 3 sll~r~~~-----~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~----------~~~~~~~~~~~~~---~d~~i~v~ 64 (193)
||+|+|.. ...++.|.........+.......+.||||+|. +.+..+...++.. +|++++|+
T Consensus 44 slin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~ 123 (223)
T 4dhe_A 44 TAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMM 123 (223)
T ss_dssp HHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEE
Confidence 56777611 222333333333334441144567899999994 4445566677766 78899999
Q ss_pred eCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC--HHHHHH-HHH------hCCCcEEEecCCCC
Q psy38 65 DITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS--EAEAKA-FAS------QNDILHFETSSRSG 135 (193)
Q Consensus 65 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~--~~~~~~-~~~------~~~~~~~~~Sa~~~ 135 (193)
|+++..+.. ...|+..+.. ...|+++|+||+|+... ..+. .+...+ +.. ..+++++++||++|
T Consensus 124 d~~~~~~~~-~~~~~~~l~~----~~~p~i~v~nK~Dl~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g 195 (223)
T 4dhe_A 124 DARRPLTEL-DRRMIEWFAP----TGKPIHSLLTKCDKLTR---QESINALRATQKSLDAYRDAGYAGKLTVQLFSALKR 195 (223)
T ss_dssp ETTSCCCHH-HHHHHHHHGG----GCCCEEEEEECGGGSCH---HHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTT
T ss_pred eCCCCCCHH-HHHHHHHHHh----cCCCEEEEEeccccCCh---hhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCC
Confidence 998743211 2334444443 34789999999998651 2211 111222 222 14568999999999
Q ss_pred cCHHHHHHHHHHHHHHH
Q psy38 136 FQVENAFTAVTQEIYNR 152 (193)
Q Consensus 136 ~~i~e~f~~i~~~i~~~ 152 (193)
.|++++|.+|.+.+...
T Consensus 196 ~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 196 TGLDDAHALIESWLRPA 212 (223)
T ss_dssp BSHHHHHHHHHHHHC--
T ss_pred cCHHHHHHHHHHhcCcc
Confidence 99999999999877544
No 135
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.63 E-value=3.4e-16 Score=120.52 Aligned_cols=136 Identities=16% Similarity=0.098 Sum_probs=100.8
Q ss_pred eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcccccc------chhhhc--cCccEEEEEEeCCCh
Q psy38 3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRS------ITKSYY--RNSVGALLVYDITSR 69 (193)
Q Consensus 3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~------~~~~~~--~~~d~~i~v~d~~~~ 69 (193)
||+|++ .....|+++.+.....+.+ ++ ..+.+|||+|+..+.. ....++ .++|++++|+|+++.
T Consensus 18 TL~n~l~g~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~ 94 (271)
T 3k53_A 18 TIFNALTGLRQHVGNWPGVTVEKKEGIMEY-RE--KEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL 94 (271)
T ss_dssp HHHHHHHTTCEEEEECTTSSCEEEEEEEEE-TT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH
T ss_pred HHHHHHhCCCcccCCCCCeEEEeeEEEEEE-CC--ceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc
Confidence 566666 2345566667787777777 66 4589999999988766 456666 689999999999875
Q ss_pred hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 70 ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 70 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
+ ....|+.++.... ..|+++|+||+|+... +.+... ...+++..+++++++||++|.|++++|.++.+.+
T Consensus 95 ~---~~~~~~~~~~~~~---~~p~ilv~NK~Dl~~~---~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 95 M---RNLFLTLELFEME---VKNIILVLNKFDLLKK---KGAKID-IKKMRKELGVPVIPTNAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp H---HHHHHHHHHHHTT---CCSEEEEEECHHHHHH---HTCCCC-HHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred h---hhHHHHHHHHhcC---CCCEEEEEEChhcCcc---cccHHH-HHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3 3445555565532 2789999999998541 222222 5677888899999999999999999999999876
Q ss_pred HH
Q psy38 150 YN 151 (193)
Q Consensus 150 ~~ 151 (193)
..
T Consensus 165 ~~ 166 (271)
T 3k53_A 165 EG 166 (271)
T ss_dssp HT
T ss_pred hc
Confidence 43
No 136
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.62 E-value=2.7e-15 Score=123.90 Aligned_cols=133 Identities=21% Similarity=0.185 Sum_probs=97.0
Q ss_pred eeeeeec-------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcc-cccc--------chhhhccCccEEEEEEe
Q psy38 2 VTLLYLY-------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQE-RFRS--------ITKSYYRNSVGALLVYD 65 (193)
Q Consensus 2 ~sll~r~-------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~-~~~~--------~~~~~~~~~d~~i~v~d 65 (193)
.||+|++ ...+..| ..++....+.+ +| ..+.+|||+|.. .+.. ....+++.+|++|+|+|
T Consensus 257 SSLln~L~~~~~a~vs~~~gT-T~d~~~~~i~~-~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD 332 (482)
T 1xzp_A 257 STLLNRLLNEDRAIVTDIPGT-TRDVISEEIVI-RG--ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLD 332 (482)
T ss_dssp CHHHHHHHHHTBCCCCCSSCC-SSCSCCEEEEE-TT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHCCCCCccCCCCCe-eeeeEEEEEec-CC--eEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEec
Confidence 3677777 2233333 46788888888 77 568999999987 5542 23467889999999999
Q ss_pred CCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHH
Q psy38 66 ITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAV 145 (193)
Q Consensus 66 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i 145 (193)
++++.++++.. +++.+ ...|+++|+||+|+... +..++..+++. .+++++++||++|.|++++|.+|
T Consensus 333 ~s~~~s~~~~~-il~~l------~~~piivV~NK~DL~~~-----~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l 399 (482)
T 1xzp_A 333 ASSPLDEEDRK-ILERI------KNKRYLVVINKVDVVEK-----INEEEIKNKLG-TDRHMVKISALKGEGLEKLEESI 399 (482)
T ss_dssp TTSCCCHHHHH-HHHHH------TTSSEEEEEEECSSCCC-----CCHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHH
T ss_pred CCCCCCHHHHH-HHHHh------cCCCEEEEEECcccccc-----cCHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHH
Confidence 99887776542 22222 24789999999999652 34455545443 45789999999999999999999
Q ss_pred HHHHHH
Q psy38 146 TQEIYN 151 (193)
Q Consensus 146 ~~~i~~ 151 (193)
.+.+..
T Consensus 400 ~~~~~~ 405 (482)
T 1xzp_A 400 YRETQE 405 (482)
T ss_dssp HHHTHH
T ss_pred HHHHhh
Confidence 998764
No 137
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.61 E-value=6.2e-15 Score=117.76 Aligned_cols=113 Identities=12% Similarity=0.127 Sum_probs=88.8
Q ss_pred EEEEEeeCCCcccccc---------chhhhccCccEEEEEEeCCChh--HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCC
Q psy38 33 IKLQLWDTAGQERFRS---------ITKSYYRNSVGALLVYDITSRA--SFEHIPVWMMEAKRHIEPHRPVFALVGCKLD 101 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~---------~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 101 (193)
..+.+|||+|...... ....+...+|++++|+|+++.. +++....|+..+..... ..|+++|+||+|
T Consensus 214 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~D 291 (357)
T 2e87_A 214 FRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKID 291 (357)
T ss_dssp EEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTT
T ss_pred ceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcc
Confidence 6789999999855321 1123455799999999998876 67888889998887643 578999999999
Q ss_pred CCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 102 LLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 102 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
+... .. .+++.+++...+++++++||++|.|++++|.++.+.+...
T Consensus 292 l~~~---~~--~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 292 VADE---EN--IKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TCCH---HH--HHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred cCCh---HH--HHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 9652 22 2456667777889999999999999999999999988654
No 138
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.60 E-value=1.5e-15 Score=120.49 Aligned_cols=119 Identities=15% Similarity=0.156 Sum_probs=91.7
Q ss_pred EEEecCCcEEEEEEeeCCCccc----cccchhhhcc---CccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcC-CCCCe
Q psy38 24 LVTMRDGARIKLQLWDTAGQER----FRSITKSYYR---NSVGALLVYDITS---RASFEHIPVWMMEAKRHIE-PHRPV 92 (193)
Q Consensus 24 ~~~~~~~~~~~l~l~D~~g~~~----~~~~~~~~~~---~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~-~~~~p 92 (193)
.+.+ ++ ...+.+|||+|..+ +..+...|++ .++++|+|+|+++ +.+++++..|+.++..+.. ....|
T Consensus 199 ~v~~-~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p 276 (342)
T 1lnz_A 199 MVET-DD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP 276 (342)
T ss_dssp EEEC-SS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSC
T ss_pred EEEe-CC-CceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCC
Confidence 4555 32 24688999999643 4445566655 4999999999998 7899999999999988643 24688
Q ss_pred EEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC--CcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 93 FALVGCKLDLLQSGVPREVSEAEAKAFASQND--ILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 93 iilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
+++|+||+|+.. ..+...+++.... ++++++||+++.|++++|.+|.+.+.+
T Consensus 277 ~ilV~NK~Dl~~-------~~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 277 QIIVANKMDMPE-------AAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp BCBEEECTTSTT-------HHHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred EEEEEECccCCC-------CHHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 999999999854 1234556666665 689999999999999999999987743
No 139
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.59 E-value=4.3e-15 Score=121.76 Aligned_cols=134 Identities=18% Similarity=0.163 Sum_probs=89.6
Q ss_pred eeeeecc------CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccc---------cccchhhhccCccEEEEEEeCC
Q psy38 3 TLLYLYI------QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQER---------FRSITKSYYRNSVGALLVYDIT 67 (193)
Q Consensus 3 sll~r~~------~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~---------~~~~~~~~~~~~d~~i~v~d~~ 67 (193)
||+|||. ....|.+..++....+.+ +|. .+.+|||+|.+. +......+++++|++++|+|++
T Consensus 16 tL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~-~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~ 92 (439)
T 1mky_A 16 TLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW-YGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGK 92 (439)
T ss_dssp HHHHHHHC--------------CCSEEEEEE-TTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETT
T ss_pred HHHHHHhCCCCceecCCCCCccceeeEEEEE-CCe--EEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 6778871 123344455777778888 774 578999999764 2344577899999999999998
Q ss_pred ChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHH-HHHHHhCCC-cEEEecCCCCcCHHHHHHHH
Q psy38 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEA-KAFASQNDI-LHFETSSRSGFQVENAFTAV 145 (193)
Q Consensus 68 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~-~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i 145 (193)
+..+..+ .|+..+.... ..|+++|+||+|+.. . . ..+. .+++ ..++ +++++||++|.|++++|+++
T Consensus 93 ~~~~~~d--~~i~~~l~~~---~~p~ilv~NK~D~~~----~-~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i 160 (439)
T 1mky_A 93 RGITKED--ESLADFLRKS---TVDTILVANKAENLR----E-F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETI 160 (439)
T ss_dssp TCCCHHH--HHHHHHHHHH---TCCEEEEEESCCSHH----H-H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHH
T ss_pred CCCCHHH--HHHHHHHHHc---CCCEEEEEeCCCCcc----c-c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHH
Confidence 7544332 2333333322 468899999999743 1 1 2223 4454 4566 78999999999999999999
Q ss_pred HHHHHH
Q psy38 146 TQEIYN 151 (193)
Q Consensus 146 ~~~i~~ 151 (193)
.+.+.+
T Consensus 161 ~~~l~~ 166 (439)
T 1mky_A 161 IKKLEE 166 (439)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 988764
No 140
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.57 E-value=5.6e-15 Score=115.37 Aligned_cols=108 Identities=19% Similarity=0.091 Sum_probs=76.7
Q ss_pred cEEEEEEeeCCCccc--------cccchhhhccCccEEEEEEeCCChhHHhhHHHHHH-HHHHhcCCCCCeEEEEeeCCC
Q psy38 31 ARIKLQLWDTAGQER--------FRSITKSYYRNSVGALLVYDITSRASFEHIPVWMM-EAKRHIEPHRPVFALVGCKLD 101 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~-~i~~~~~~~~~piilv~nK~D 101 (193)
....+.||||+|..+ +......+++++|++++|+|++++.+.. ..|+. .+... . ...|+++|+||+|
T Consensus 53 ~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~-~~~p~ilV~NK~D 128 (301)
T 1wf3_A 53 GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPL-V-GKVPILLVGNKLD 128 (301)
T ss_dssp TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-T-TTSCEEEEEECGG
T ss_pred CCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh-c-CCCCEEEEEECcc
Confidence 347899999999876 3445567899999999999998764333 34553 34332 1 3578999999999
Q ss_pred CCCCCCCCccCHHHHHHHHHh-CC-CcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 102 LLQSGVPREVSEAEAKAFASQ-ND-ILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 102 l~~~~~~~~v~~~~~~~~~~~-~~-~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
+... .. ...+.+.. .+ .+++++||++|.|++++|+++...+
T Consensus 129 l~~~---~~----~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 129 AAKY---PE----EAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp GCSS---HH----HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred cCCc---hH----HHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 8651 11 01222222 23 4789999999999999999998754
No 141
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.57 E-value=1.6e-14 Score=117.38 Aligned_cols=109 Identities=18% Similarity=0.188 Sum_probs=75.8
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCC----hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS----RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP 108 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~ 108 (193)
..+.||||+|+++|.......+..+|++|+|+|+++ +++++.+..| ... ...|+++|+||+|+.... .
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l---~~~~iivv~NK~Dl~~~~-~ 152 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EIL---GIDKIIIVQNKIDLVDEK-Q 152 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHT---TCCCEEEEEECTTSSCTT-T
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHc---CCCeEEEEEEccCCCCHH-H
Confidence 789999999999998777777888999999999985 4455444322 221 235788999999996531 1
Q ss_pred CccCHHHHHHHHHh---CCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 109 REVSEAEAKAFASQ---NDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 109 ~~v~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
.....++..+++.. .+++++++||++|.|++++|++|.+.+
T Consensus 153 ~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 153 AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 12334566677665 357999999999999999999998754
No 142
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.56 E-value=3.4e-14 Score=120.01 Aligned_cols=112 Identities=21% Similarity=0.240 Sum_probs=90.9
Q ss_pred CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCC
Q psy38 29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP 108 (193)
Q Consensus 29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~ 108 (193)
++..+.+.||||+|+.+|...+..++..+|++|+|+|+++..+++....|...+.. +.|+++|+||+|+...
T Consensus 67 ~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~-----~ipiIvViNKiDl~~a--- 138 (599)
T 3cb4_D 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM-----DLEVVPVLNKIDLPAA--- 138 (599)
T ss_dssp TSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT-----TCEEEEEEECTTSTTC---
T ss_pred CCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC-----CCCEEEeeeccCcccc---
Confidence 56678999999999999999899999999999999999987777777777665432 4789999999999652
Q ss_pred CccCHHHHHHHHHhCCC---cEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 109 REVSEAEAKAFASQNDI---LHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 109 ~~v~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
. ......++....++ .++++||++|.|++++|+++++.+.
T Consensus 139 ~--~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 139 D--PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp C--HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred c--HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence 1 23334556666665 4999999999999999999987653
No 143
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.55 E-value=5.7e-14 Score=118.52 Aligned_cols=112 Identities=22% Similarity=0.276 Sum_probs=91.0
Q ss_pred CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCC
Q psy38 29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP 108 (193)
Q Consensus 29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~ 108 (193)
++..+.+.||||+|+.+|......++..+|++|+|+|+++..+++....|...... +.|+++|+||+|+...
T Consensus 69 dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~-----~ipiIvviNKiDl~~a--- 140 (600)
T 2ywe_A 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQ-----DLVIIPVINKIDLPSA--- 140 (600)
T ss_dssp TSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT-----TCEEEEEEECTTSTTC---
T ss_pred CCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC-----CCCEEEEEeccCcccc---
Confidence 56678999999999999988888999999999999999998777777777665432 4789999999999652
Q ss_pred CccCHHHHHHHHHhCCC---cEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 109 REVSEAEAKAFASQNDI---LHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 109 ~~v~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
. ......++....++ .++++||++|.||+++|+++++.+.
T Consensus 141 ~--~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 141 D--VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp C--HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred C--HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 1 23334556666666 4899999999999999999987653
No 144
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.54 E-value=2.1e-14 Score=112.24 Aligned_cols=110 Identities=13% Similarity=0.083 Sum_probs=85.8
Q ss_pred CcEEEEEEee-CC-----CccccccchhhhccCccEEEEEEeCCChh-HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38 30 GARIKLQLWD-TA-----GQERFRSITKSYYRNSVGALLVYDITSRA-SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL 102 (193)
Q Consensus 30 ~~~~~l~l~D-~~-----g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 102 (193)
|+.+.+..|| +. .++++..+.+.+++++|++++|+|+++++ +++.+.+|+..+.. .+.|+++|+||+||
T Consensus 47 GD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL 122 (302)
T 2yv5_A 47 GDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDL 122 (302)
T ss_dssp TCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGG
T ss_pred ceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccC
Confidence 3445555555 22 26778888899999999999999999986 89988999987765 24788899999999
Q ss_pred CCCCCCCccC-HHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHH
Q psy38 103 LQSGVPREVS-EAEAKAFASQNDILHFETSSRSGFQVENAFTAVT 146 (193)
Q Consensus 103 ~~~~~~~~v~-~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~ 146 (193)
.++ ..+. .++..+++...+++++++||++|.|++++|..+.
T Consensus 123 ~~~---~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 123 LNE---EEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CCH---HHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred CCc---cccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 651 2222 4555667777889999999999999999998764
No 145
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.53 E-value=3.8e-15 Score=122.49 Aligned_cols=132 Identities=19% Similarity=0.173 Sum_probs=84.6
Q ss_pred eeeeec------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccch--------hhhccCccEEEEEEeCCC
Q psy38 3 TLLYLY------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSIT--------KSYYRNSVGALLVYDITS 68 (193)
Q Consensus 3 sll~r~------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~--------~~~~~~~d~~i~v~d~~~ 68 (193)
||+|++ .....|+++.++....+.+ +| ..+.+|||+|..++.... ..+++++|++++|+|+++
T Consensus 239 SLln~L~~~~~a~v~~~~gtT~d~~~~~i~~-~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~ 315 (462)
T 3geh_A 239 SLLNAWSQSDRAIVTDLPGTTRDVVESQLVV-GG--IPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAAT 315 (462)
T ss_dssp HHHHHHHHHHBSCCSCCTTCCHHHHHHEEEE-TT--EEEEECC--------------------CCCCSCSEEEEEEETTT
T ss_pred HHHHHHhCCCcccccCCCCeeEEEEEEEEEE-CC--EEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCC
Confidence 677776 1233355556777777777 77 567899999986654433 336889999999999998
Q ss_pred hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 69 RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 69 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
+.+... ..|+..+.. .|+++|+||+|+... ..+. ...++. .+.+++++||++|.|++++|.+|.+.
T Consensus 316 ~~~~~~-~~i~~~l~~------~piivV~NK~Dl~~~---~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~ 381 (462)
T 3geh_A 316 GWTTGD-QEIYEQVKH------RPLILVMNKIDLVEK---QLIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAILEI 381 (462)
T ss_dssp CSCHHH-HHHHHHHTT------SCEEEEEECTTSSCG---GGST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred CCCHHH-HHHHHhccC------CcEEEEEECCCCCcc---hhhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 655543 445544432 589999999999663 2222 111111 35689999999999999999999987
Q ss_pred HHH
Q psy38 149 IYN 151 (193)
Q Consensus 149 i~~ 151 (193)
+..
T Consensus 382 ~~~ 384 (462)
T 3geh_A 382 VQT 384 (462)
T ss_dssp HTT
T ss_pred Hhc
Confidence 654
No 146
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.53 E-value=4.4e-16 Score=129.81 Aligned_cols=139 Identities=18% Similarity=0.155 Sum_probs=96.8
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||+++| ...+.|+++.++....+..+++ ..+.||||||++.|..++..++..+|++|+|+|+++....+...
T Consensus 18 TSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g--~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e 95 (537)
T 3izy_P 18 TTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG--EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVE 95 (537)
T ss_dssp HHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS--SCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHH
T ss_pred HHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC--CEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHH
Confidence 3677777 4456677767776666655334 36889999999999999999999999999999999854443332
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHH---HHhC--CCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAF---ASQN--DILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
. +..+.. ...|+++|+||+|+.+..... +... ...+ +..+ .++++++||++|.|++++|+++...+
T Consensus 96 ~-l~~~~~----~~vPiIVViNKiDl~~~~~~~-v~~~-l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 96 S-IQHAKD----AHVPIVLAINKCDKAEADPEK-VKKE-LLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp H-HHHHHT----TTCCEEECCBSGGGTTTSCCS-SSSH-HHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred H-HHHHHH----cCCcEEEEEecccccccchHH-HHHH-HHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence 2 222222 347899999999997532111 2111 1111 1222 24899999999999999999998765
No 147
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.52 E-value=2.6e-15 Score=122.94 Aligned_cols=134 Identities=16% Similarity=0.141 Sum_probs=80.1
Q ss_pred eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcc--------ccccchhhhccCccEEEEEEeCCChh
Q psy38 3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQE--------RFRSITKSYYRNSVGALLVYDITSRA 70 (193)
Q Consensus 3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~--------~~~~~~~~~~~~~d~~i~v~d~~~~~ 70 (193)
||+||+ .....++.|.+.......+ ......+.+|||+|++ .+...+..+++++|++|+|+|+++..
T Consensus 18 tL~n~l~~~~~~~v~~~~g~T~d~~~~~~-~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~ 96 (436)
T 2hjg_A 18 TIFNRIAGERISIVEDTPGVTRDRIYSSA-EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGV 96 (436)
T ss_dssp HHHHHHEEEECC-----------CEEEEC-TTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCS
T ss_pred HHHHHHhCCCceeecCCCCCccceEEEEE-EECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCC
Confidence 567777 2223444444333333333 3233578999999985 56667788999999999999998865
Q ss_pred HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHH
Q psy38 71 SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 71 s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
++.+ .|+..+.. ....|+++|+||+|+... . ....++. ..++ .++++||++|.|++++|+++.+.+
T Consensus 97 ~~~d--~~~~~~l~---~~~~pvilv~NK~D~~~~---~----~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l 163 (436)
T 2hjg_A 97 TAAD--EEVAKILY---RTKKPVVLAVNKLDNTEM---R----ANIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHF 163 (436)
T ss_dssp CHHH--HHHHHHHT---TCCSCEEEEEECCCC------------CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTG
T ss_pred CHHH--HHHHHHHH---HcCCCEEEEEECccCccc---h----hhHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhc
Confidence 5443 34444443 235789999999998652 1 1111233 3455 789999999999999999998876
Q ss_pred H
Q psy38 150 Y 150 (193)
Q Consensus 150 ~ 150 (193)
.
T Consensus 164 ~ 164 (436)
T 2hjg_A 164 K 164 (436)
T ss_dssp G
T ss_pred C
Confidence 4
No 148
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.52 E-value=5.4e-14 Score=114.01 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=86.6
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc-
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV- 111 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v- 111 (193)
..+.||||+|+++|......++..+|++|+|+|+++..++.....|+..+.... ..|+++|+||+|+.+. ...
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~---~~~iivviNK~Dl~~~---~~~~ 148 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG---VKNLIIVQNKVDVVSK---EEAL 148 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT---CCCEEEEEECGGGSCH---HHHH
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC---CCCEEEEEECccccch---HHHH
Confidence 789999999999999999999999999999999998776777777777665543 2588899999999652 111
Q ss_pred -CHHHHHHHHHhC---CCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 112 -SEAEAKAFASQN---DILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 112 -~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
..++..++.... +++++++||++|.|++++|++|.+.+
T Consensus 149 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 149 SQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 112333333332 56899999999999999999998754
No 149
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.51 E-value=5.9e-14 Score=114.02 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=79.3
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCC----hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS----RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP 108 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~ 108 (193)
..+.||||+|+++|.......+..+|++|+|+|+++ +++++.+..| ... ...|+++|+||+|+.... .
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~---~~~~iivviNK~Dl~~~~-~ 154 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QII---GQKNIIIAQNKIELVDKE-K 154 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHH---TCCCEEEEEECGGGSCHH-H
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHc---CCCcEEEEEECccCCCHH-H
Confidence 789999999999988777777888999999999985 3444444322 222 125788999999996520 0
Q ss_pred CccCHHHHHHHHHh---CCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38 109 REVSEAEAKAFASQ---NDILHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 109 ~~v~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
.....++..+++.. .+++++++||++|.|++++|++|.+.+
T Consensus 155 ~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 155 ALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 01123445556554 457999999999999999999988754
No 150
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.50 E-value=2.6e-15 Score=120.09 Aligned_cols=132 Identities=17% Similarity=0.243 Sum_probs=76.9
Q ss_pred CcceeeEEEEEEEecCCcEEEEEEeeCCCc-------cccccchh-------hhccCccEE-----------EEEEeCCC
Q psy38 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQ-------ERFRSITK-------SYYRNSVGA-----------LLVYDITS 68 (193)
Q Consensus 14 pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~-------~~~~~~~~-------~~~~~~d~~-----------i~v~d~~~ 68 (193)
||++.++....+.. ++..+.+.+|||+|. +.+..++. .|+.+++++ +++|++++
T Consensus 77 ~ti~~~~~~~~~~~-~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~ 155 (361)
T 2qag_A 77 RTVQIEASTVEIEE-RGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISP 155 (361)
T ss_dssp -CEEEEEEEEC-----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECS
T ss_pred CceeEEEEEEEeec-CCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEec
Confidence 67776666666665 677789999999999 67777766 666655443 35666654
Q ss_pred -hhHHhhHH-HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCH--HHHHHHHHhCCCcEEEecCCCCcCHHHHHHH
Q psy38 69 -RASFEHIP-VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE--AEAKAFASQNDILHFETSSRSGFQVENAFTA 144 (193)
Q Consensus 69 -~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~ 144 (193)
..++..+. .|+..+ ....|+|+|+||+|+.. .+.+.. +.+.+++...+++++++||+++.+ ++.|.+
T Consensus 156 ~~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~---~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~ 226 (361)
T 2qag_A 156 FGHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLT---LKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKE 226 (361)
T ss_dssp SSSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSC---HHHHHHHHHHHHHHTTCC-CCSCCCC----------CHH
T ss_pred CCCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCC---HHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHH
Confidence 45566654 344433 24578999999999965 233433 567777888899999999999999 999999
Q ss_pred HHHHHHHHhcC
Q psy38 145 VTQEIYNRVQS 155 (193)
Q Consensus 145 i~~~i~~~~~~ 155 (193)
+++.+.+..+.
T Consensus 227 l~~~i~~~ip~ 237 (361)
T 2qag_A 227 QTRLLKASIPF 237 (361)
T ss_dssp HHHHHHHTCSC
T ss_pred HHHHHHhcCCC
Confidence 99999876654
No 151
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.49 E-value=7e-15 Score=107.64 Aligned_cols=109 Identities=7% Similarity=-0.026 Sum_probs=68.8
Q ss_pred CCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcC----CCCCeEEEEeeCC-CCCCCCCCCccCHH
Q psy38 40 TAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIE----PHRPVFALVGCKL-DLLQSGVPREVSEA 114 (193)
Q Consensus 40 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~-Dl~~~~~~~~v~~~ 114 (193)
.+||.+++.+|+.||.++|++|||+|.+|.+.++ ...-+.++..... ..+.|++|++||. |+....+..++...
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~ 187 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 187 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence 4589999999999999999999999999976544 4443333322221 2568999999995 77553222222211
Q ss_pred HHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 115 EAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 115 ~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
....-. ...+.++.|||.+|+|+.|.++||+..+.
T Consensus 188 L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 188 LHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp TTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred cCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 111111 24568889999999999999999987653
No 152
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.47 E-value=1.8e-13 Score=113.26 Aligned_cols=127 Identities=16% Similarity=0.130 Sum_probs=86.5
Q ss_pred CCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcCC
Q psy38 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS---RASFEHIPVWMMEAKRHIEP 88 (193)
Q Consensus 12 ~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~ 88 (193)
..+.+.++.....+.+ ++ ..+.||||+|+++|......++..+|++|+|+|+++ +++++.+. .+...
T Consensus 55 ~~~GiTi~~~~~~~~~-~~--~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~~--- 124 (482)
T 1wb1_A 55 QKRGITIDIGFSAFKL-EN--YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML----ILDHF--- 124 (482)
T ss_dssp ---------CCCEEEE-TT--EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH----HHHHT---
T ss_pred ccCccEEecceEEEEE-CC--EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHH----HHHHc---
Confidence 3333333444445566 55 679999999999998888899999999999999987 44444432 22221
Q ss_pred CCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC----CCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 89 HRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN----DILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 89 ~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
..|+++|+||+|+.+.. ......++..+++... +++++++||++|.|+++++++|.+.+-
T Consensus 125 -~ip~IvviNK~Dl~~~~-~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 125 -NIPIIVVITKSDNAGTE-EIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp -TCCBCEEEECTTSSCHH-HHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -CCCEEEEEECCCcccch-hHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 35678999999996410 0111234455555555 578999999999999999999998775
No 153
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.46 E-value=1.3e-13 Score=112.92 Aligned_cols=127 Identities=16% Similarity=0.100 Sum_probs=84.8
Q ss_pred CCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChh---HHh---hHHHHHHHHHH
Q psy38 11 ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA---SFE---HIPVWMMEAKR 84 (193)
Q Consensus 11 ~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~ 84 (193)
+..+.++++.....+.. ++ ..+.||||+|+++|......++..+|++|+|+|+++.. +|+ .....+..+..
T Consensus 76 er~~GiTid~~~~~~~~-~~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~ 152 (439)
T 3j2k_7 76 ERDKGKTVEVGRAYFET-EK--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT 152 (439)
T ss_pred HhhcCceEEEeEEEEec-CC--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH
Confidence 34455666777666666 44 58999999999999998999999999999999998753 222 12222222222
Q ss_pred hcCCCCCeEEEEeeCCCCCCCCCC---CccCHHHHHHHHHhCC------CcEEEecCCCCcCHHHHHH
Q psy38 85 HIEPHRPVFALVGCKLDLLQSGVP---REVSEAEAKAFASQND------ILHFETSSRSGFQVENAFT 143 (193)
Q Consensus 85 ~~~~~~~piilv~nK~Dl~~~~~~---~~v~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~e~f~ 143 (193)
...+++++|+||+|+...... .....++...++...+ ++++++||++|.|++++++
T Consensus 153 ---~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 153 ---AGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ---cCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 223348899999998531000 0111233444555544 4799999999999999766
No 154
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.46 E-value=1.4e-13 Score=114.06 Aligned_cols=107 Identities=16% Similarity=0.022 Sum_probs=71.3
Q ss_pred CcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhh-----HHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 30 GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH-----IPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 30 ~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
.....+.||||+|+++|......++.++|++|+|+|+++..++.. ...+...+... ....|+++|+||+|+.+
T Consensus 108 ~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~--~~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 108 THRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--LGIHNLIIAMNKMDNVD 185 (483)
T ss_dssp CSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGGT
T ss_pred cCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH--cCCCcEEEEEECcCccc
Confidence 345789999999999999999999999999999999998654322 11122222222 22356889999999965
Q ss_pred CCCCCccCHHH----HHHHHHhC-----CCcEEEecCCCCcCHHHH
Q psy38 105 SGVPREVSEAE----AKAFASQN-----DILHFETSSRSGFQVENA 141 (193)
Q Consensus 105 ~~~~~~v~~~~----~~~~~~~~-----~~~~~~~Sa~~~~~i~e~ 141 (193)
.+....++ ...+.... +++++++||++|.|++++
T Consensus 186 ---~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 186 ---WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred ---chHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 12222222 22333332 468999999999999863
No 155
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.46 E-value=1.1e-13 Score=110.96 Aligned_cols=133 Identities=10% Similarity=-0.066 Sum_probs=92.0
Q ss_pred eeeeeccCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHH
Q psy38 3 TLLYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEA 82 (193)
Q Consensus 3 sll~r~~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i 82 (193)
||++++. +...|++ .....+.. ++ ..+.||||+|+++|.......+..+|++|+|+| +. ..+.....|+..+
T Consensus 36 TL~~~L~-~~giTi~--~~~~~~~~-~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~ 107 (370)
T 2elf_A 36 SLAANLG-KKGTSSD--ITMYNNDK-EG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIAL 107 (370)
T ss_dssp HHHHTTS-EEEEESS--SEEEEECS-SS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHH
T ss_pred HHHHHHH-hCCEEEE--eeEEEEec-CC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHH
Confidence 4455554 3344544 33334444 33 569999999999998877888899999999999 43 3455556666655
Q ss_pred HHhcCCCCCeE-EEEee-CCCCCCCCCCCccCH--HHHHHHHHhCC---CcEEE--ecCCC---CcCHHHHHHHHHHHHH
Q psy38 83 KRHIEPHRPVF-ALVGC-KLDLLQSGVPREVSE--AEAKAFASQND---ILHFE--TSSRS---GFQVENAFTAVTQEIY 150 (193)
Q Consensus 83 ~~~~~~~~~pi-ilv~n-K~Dl~~~~~~~~v~~--~~~~~~~~~~~---~~~~~--~Sa~~---~~~i~e~f~~i~~~i~ 150 (193)
... ..|. ++++| |+|+ + ...+.. ++..++++..+ +++++ +||++ +.|++++|+.|.+.+-
T Consensus 108 ~~~----~i~~~ivvvNNK~Dl-~---~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 108 DLL----GFKHGIIALTRSDST-H---MHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp HHT----TCCEEEEEECCGGGS-C---HHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred HHc----CCCeEEEEEEeccCC-C---HHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 543 2444 78888 9999 5 222222 45566665543 68999 99999 9999999999988765
Q ss_pred H
Q psy38 151 N 151 (193)
Q Consensus 151 ~ 151 (193)
.
T Consensus 180 ~ 180 (370)
T 2elf_A 180 K 180 (370)
T ss_dssp H
T ss_pred c
Confidence 4
No 156
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.45 E-value=1.9e-13 Score=104.39 Aligned_cols=142 Identities=10% Similarity=-0.033 Sum_probs=86.8
Q ss_pred eeeeec------cCCCCCc-ceeeEEEEEEEecCCcEEEEEEeeCCCccccccc-----------hhhhccCccEEEEEE
Q psy38 3 TLLYLY------IQISDPT-VGVDFFARLVTMRDGARIKLQLWDTAGQERFRSI-----------TKSYYRNSVGALLVY 64 (193)
Q Consensus 3 sll~r~------~~~~~pt-~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~-----------~~~~~~~~d~~i~v~ 64 (193)
||++++ ...+.|+ +..+.....+.. ++ ..+.||||+|...+... ...+++.+|++|+|+
T Consensus 37 tl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~ 113 (260)
T 2xtp_A 37 AAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GN--REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVT 113 (260)
T ss_dssp HHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TT--EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CC--CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 566666 2234444 344555556666 55 56899999998765322 223778999999999
Q ss_pred eCCChhHH-hhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCH-------HHHHHHHHhCCCc---E--EEec
Q psy38 65 DITSRASF-EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE-------AEAKAFASQNDIL---H--FETS 131 (193)
Q Consensus 65 d~~~~~s~-~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~-------~~~~~~~~~~~~~---~--~~~S 131 (193)
|+++.... ..+..|+..+.... ...++++++.||.|+... .+.. .++..++...+.. + +++|
T Consensus 114 d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~S 188 (260)
T 2xtp_A 114 QLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG----SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEG 188 (260)
T ss_dssp ETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC----CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCH
T ss_pred eCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc----cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccc
Confidence 99862221 12223333332110 123455555559999642 1222 3344455555432 2 7899
Q ss_pred CCCCcCHHHHHHHHHHHHHHH
Q psy38 132 SRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 132 a~~~~~i~e~f~~i~~~i~~~ 152 (193)
|+++.|++++|.+|.+.+...
T Consensus 189 A~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 189 SNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHhC
Confidence 999999999999999987663
No 157
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.43 E-value=6.1e-15 Score=122.03 Aligned_cols=137 Identities=15% Similarity=0.115 Sum_probs=88.2
Q ss_pred eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38 2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76 (193)
Q Consensus 2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 76 (193)
+||++++ ...+.+++..++....+.. ++ ..+.||||||++.|..++..++..+|++|+|+|+++....+..
T Consensus 18 TTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~-~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~- 93 (501)
T 1zo1_I 18 TSLLEYIRSTKVASGEAGGITQHIGAYHVET-EN--GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTI- 93 (501)
T ss_dssp HHHHHHHHHHHHSBTTBCCCCCCSSCCCCCT-TS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTH-
T ss_pred HHHHHHHHcCCCccccCCCeeEeEEEEEEEE-CC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHH-
Confidence 3566666 2333344444444444444 44 4578999999999999999999999999999999874222222
Q ss_pred HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHH--HHHHHHHhCC--CcEEEecCCCCcCHHHHHHHHHH
Q psy38 77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEA--EAKAFASQND--ILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~--~~~~~~~~~~--~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
.++..+.. ...|+++++||+|+......+ +... +...++..++ ++++++||++|.|++++|+++..
T Consensus 94 e~l~~~~~----~~vPiIVviNKiDl~~~~~~~-v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 94 EAIQHAKA----AQVPVVVAVNKIDKPEADPDR-VKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp HHHHHHHH----TTCCEEEEEECSSSSTTCCCC-TTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred HHHHHHHh----cCceEEEEEEeccccccCHHH-HHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 22222222 246899999999996521111 1100 0001122232 68999999999999999999875
No 158
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.43 E-value=4.7e-14 Score=115.46 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=80.4
Q ss_pred cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcC----CCCCeEEEEeeCCCCCCCC
Q psy38 31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIE----PHRPVFALVGCKLDLLQSG 106 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~ 106 (193)
....+.||||+|+++|......++..+|++|+|+|+++ .+|+.+..|..+..++.. ...+++++|+||+|+.+..
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 44679999999999999888999999999999999998 677754443333322211 2234688999999996521
Q ss_pred CCC---ccCHHHHHHHHHhCC-----CcEEEecCCCCcCHHHHHH
Q psy38 107 VPR---EVSEAEAKAFASQND-----ILHFETSSRSGFQVENAFT 143 (193)
Q Consensus 107 ~~~---~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~e~f~ 143 (193)
... ....++..+++...+ ++++++||++|.|+.+++.
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 000 122355667777665 6799999999999987664
No 159
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.43 E-value=5.4e-13 Score=109.28 Aligned_cols=139 Identities=20% Similarity=0.143 Sum_probs=86.0
Q ss_pred eeeeecc------CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccch------------hhhccCccEEEEEE
Q psy38 3 TLLYLYI------QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSIT------------KSYYRNSVGALLVY 64 (193)
Q Consensus 3 sll~r~~------~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~------------~~~~~~~d~~i~v~ 64 (193)
||+|++. ....|++..+.....+.+ +|. .+.+|||+|..++.... ..+++.+|++++++
T Consensus 195 TLln~l~g~~~~~v~~~~gtT~d~~~~~i~~-~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~ 271 (439)
T 1mky_A 195 TLFNAILNKERALVSPIPGTTRDPVDDEVFI-DGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVL 271 (439)
T ss_dssp HHHHHHHTSTTEEECCCC------CCEEEEE-TTE--EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEE
T ss_pred HHHHHHhCCcccccCCCCCCcCCceEEEEEE-CCE--EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEE
Confidence 5667761 122333335666667777 775 57899999985432211 34677899999999
Q ss_pred eCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHH-----HHHHHhCCCcEEEecCCCCcCHH
Q psy38 65 DITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEA-----KAFASQNDILHFETSSRSGFQVE 139 (193)
Q Consensus 65 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~-----~~~~~~~~~~~~~~Sa~~~~~i~ 139 (193)
|+++..+.++. ++...... ...|+++|+||+|+.+. +....++. ..++...+++++++||++|.|++
T Consensus 272 d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 343 (439)
T 1mky_A 272 DATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDLVVH---REKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNID 343 (439)
T ss_dssp ETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSTT---GGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHH
T ss_pred eCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCCc---hhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHH
Confidence 99876555542 22222222 25799999999999652 33333332 22333345799999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy38 140 NAFTAVTQEIYNR 152 (193)
Q Consensus 140 e~f~~i~~~i~~~ 152 (193)
++|..+.+.+...
T Consensus 344 ~l~~~i~~~~~~~ 356 (439)
T 1mky_A 344 RMIDAMNLAYASY 356 (439)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999998866543
No 160
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.42 E-value=9.2e-14 Score=112.72 Aligned_cols=107 Identities=15% Similarity=0.187 Sum_probs=76.6
Q ss_pred EEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe-EEEEeeCCC
Q psy38 23 RLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV-FALVGCKLD 101 (193)
Q Consensus 23 ~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~D 101 (193)
..+.+ +.....+.||||+|+++|......++..+|++|+|+|+++... .....|+..+... ..| +++|+||+|
T Consensus 66 ~~~~~-~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~----~ip~iivviNK~D 139 (405)
T 2c78_A 66 AHVEY-ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV----GVPYIVVFMNKVD 139 (405)
T ss_dssp EEEEE-ECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT----TCCCEEEEEECGG
T ss_pred eeeEe-ccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCEEEEEEECcc
Confidence 33444 4445778999999999998888889999999999999987643 3345566555543 356 889999999
Q ss_pred CCCCCCCC--ccCHHHHHHHHHhCC-----CcEEEecCCCCcC
Q psy38 102 LLQSGVPR--EVSEAEAKAFASQND-----ILHFETSSRSGFQ 137 (193)
Q Consensus 102 l~~~~~~~--~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~ 137 (193)
+..+ .. ....++..+++...+ ++++++||++|.|
T Consensus 140 l~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 140 MVDD--PELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp GCCC--HHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred ccCc--HHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 9641 11 111234556666654 6899999999987
No 161
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.42 E-value=1.1e-12 Score=104.88 Aligned_cols=128 Identities=15% Similarity=-0.001 Sum_probs=86.8
Q ss_pred eEEEEEEEecCCcEEEEEEeeCCCccc---------cccchhhhccCccEEEEEEeCCChh--HHhhHHHHHHHHHHhcC
Q psy38 19 DFFARLVTMRDGARIKLQLWDTAGQER---------FRSITKSYYRNSVGALLVYDITSRA--SFEHIPVWMMEAKRHIE 87 (193)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~l~D~~g~~~---------~~~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~ 87 (193)
+.....+.+ +| ..+.+|||+|... |.... ..+..+|++++|+|++++. ....+..|...+... .
T Consensus 215 d~~~~~i~~-~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~ 289 (364)
T 2qtf_A 215 SPKRYAIPI-NN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKYSDALILVIDSTFSENLLIETLQSSFEILREI-G 289 (364)
T ss_dssp CSCEEEEEE-TT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-T
T ss_pred CCEEEEEEE-CC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-C
Confidence 455667777 77 4678999999622 22222 2478899999999999876 555555565555443 3
Q ss_pred CCCCeEEEEeeCCCCCCCCCCCcc-CHHHHHHHHHhC---CCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38 88 PHRPVFALVGCKLDLLQSGVPREV-SEAEAKAFASQN---DILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154 (193)
Q Consensus 88 ~~~~piilv~nK~Dl~~~~~~~~v-~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~ 154 (193)
....|+++|+||+|+.+. ... ..+.+..++... +.+++.+||+++.|++++|.+|.+.+.....
T Consensus 290 ~~~~p~ilV~NK~Dl~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 290 VSGKPILVTLNKIDKING---DLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp CCSCCEEEEEECGGGCCS---CHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred cCCCCEEEEEECCCCCCc---hHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccCC
Confidence 346789999999998652 100 012232333443 3478999999999999999999987766443
No 162
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.41 E-value=6.9e-14 Score=101.71 Aligned_cols=74 Identities=15% Similarity=0.213 Sum_probs=63.1
Q ss_pred cEEEEEEeeCCCccccccchhhhccC----ccEEEEEEeCC-ChhHHhhHHHHHHHHHHhcC---CCCCeEEEEeeCCCC
Q psy38 31 ARIKLQLWDTAGQERFRSITKSYYRN----SVGALLVYDIT-SRASFEHIPVWMMEAKRHIE---PHRPVFALVGCKLDL 102 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~~~~~~~~~~----~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl 102 (193)
..+.+.+|||+|++.+...+..++.+ +|++|+|||++ +..++..+..|+..+..... ....|+++|+||+|+
T Consensus 89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 168 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 168 (193)
T ss_dssp CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHh
Confidence 34678899999999998888888876 89999999999 89999999999988876542 346899999999999
Q ss_pred CC
Q psy38 103 LQ 104 (193)
Q Consensus 103 ~~ 104 (193)
..
T Consensus 169 ~~ 170 (193)
T 2ged_A 169 FT 170 (193)
T ss_dssp TT
T ss_pred cC
Confidence 76
No 163
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.41 E-value=5.8e-13 Score=111.20 Aligned_cols=69 Identities=19% Similarity=0.128 Sum_probs=56.0
Q ss_pred cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
..+.+.||||+|+.+|......+++.+|++|+|+|+++..+.+....| ..+.. .+.|+++|+||+|+..
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~----~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 80 KDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL----RHTPIMTFINKMDRDT 148 (528)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT----TTCCEEEEEECTTSCC
T ss_pred CCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEeCCCCcc
Confidence 347899999999999999999999999999999999987666655444 33333 2478999999999965
No 164
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.41 E-value=2.4e-13 Score=109.96 Aligned_cols=114 Identities=16% Similarity=0.102 Sum_probs=80.0
Q ss_pred CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe-EEEEeeCCCCCCCCC
Q psy38 29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV-FALVGCKLDLLQSGV 107 (193)
Q Consensus 29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~ 107 (193)
+.....+.||||+|+++|......++..+|++|+|+|+++....+.. .++..+... ..| +++|+||+|+..+
T Consensus 62 ~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~~----~vp~iivviNK~Dl~~~-- 134 (397)
T 1d2e_A 62 STAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQI----GVEHVVVYVNKADAVQD-- 134 (397)
T ss_dssp ECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHHT----TCCCEEEEEECGGGCSC--
T ss_pred ccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHHc----CCCeEEEEEECcccCCC--
Confidence 33456789999999999988888899999999999999885433333 333333332 356 6799999999641
Q ss_pred CC--ccCHHHHHHHHHhCC-----CcEEEecCCCCcC----------HHHHHHHHHHHH
Q psy38 108 PR--EVSEAEAKAFASQND-----ILHFETSSRSGFQ----------VENAFTAVTQEI 149 (193)
Q Consensus 108 ~~--~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~----------i~e~f~~i~~~i 149 (193)
.. ....++..+++...+ ++++++||++|.| +.++|+.+.+.+
T Consensus 135 ~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 135 SEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 11 112245566776655 5899999999764 777777776543
No 165
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.41 E-value=7.6e-14 Score=107.53 Aligned_cols=126 Identities=14% Similarity=0.190 Sum_probs=71.4
Q ss_pred CCcceeeEEEEEEEecCCcEEEEEEeeCCCccc-------cccch-------hhhccC-------------ccEEEEEEe
Q psy38 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQER-------FRSIT-------KSYYRN-------------SVGALLVYD 65 (193)
Q Consensus 13 ~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-------~~~~~-------~~~~~~-------------~d~~i~v~d 65 (193)
.||++.++....+.. +|..+.+.+|||+|... +..+. ..|+.. +|+++++++
T Consensus 46 ~~t~~~~~~~~~~~~-~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~ 124 (274)
T 3t5d_A 46 KKTVQVEQSKVLIKE-GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIA 124 (274)
T ss_dssp ---CCCEEEEEEECC---CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEEC
T ss_pred CCceEEEEEEEEEec-CCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEec
Confidence 788888888887777 78888999999999732 22222 333332 778999997
Q ss_pred CCChhHHhhH-HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC--HHHHHHHHHhCCCcEEEecCCCCcCHHHHH
Q psy38 66 ITSRASFEHI-PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS--EAEAKAFASQNDILHFETSSRSGFQVENAF 142 (193)
Q Consensus 66 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f 142 (193)
.+... +... ..++..+.. ..|+++|+||+|+... .... .+...+.....+++++.+||.++.|+++++
T Consensus 125 ~~~~~-~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~---~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~ 195 (274)
T 3t5d_A 125 PSGHG-LKPLDIEFMKRLHE-----KVNIIPLIAKADTLTP---EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLV 195 (274)
T ss_dssp SCCSS-CCHHHHHHHHHHTT-----TSCEEEEESSGGGSCH---HHHHHHHHHHHHHHHHTTCCCCCC-----------C
T ss_pred CCCCC-CCHHHHHHHHHHhc-----cCCEEEEEeccCCCCH---HHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHH
Confidence 76522 2222 334444433 5789999999998541 1111 123445555678999999999999999999
Q ss_pred HHHHHH
Q psy38 143 TAVTQE 148 (193)
Q Consensus 143 ~~i~~~ 148 (193)
.+|.+.
T Consensus 196 ~~l~~~ 201 (274)
T 3t5d_A 196 KKIKDR 201 (274)
T ss_dssp HHHHHT
T ss_pred HHHhcC
Confidence 988764
No 166
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.40 E-value=8.5e-14 Score=114.55 Aligned_cols=133 Identities=17% Similarity=0.140 Sum_probs=82.4
Q ss_pred eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCC--------ccccccchhhhccCccEEEEEEeCCChh
Q psy38 3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAG--------QERFRSITKSYYRNSVGALLVYDITSRA 70 (193)
Q Consensus 3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g--------~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 70 (193)
||+|++ .....++.|.+.......+ ......+.+|||+| ++.+......+++++|++|+|+|..+.
T Consensus 38 TL~n~l~~~~~~~v~~~~g~t~~~~~~~~-~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~- 115 (456)
T 4dcu_A 38 TIFNRIAGERISIVEDTPGVTRDRIYSSA-EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG- 115 (456)
T ss_dssp HHHHHHEEEEEC-----------CEEEEC-TTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSC-
T ss_pred HHHHHHhCCCCcccCCCCCcceeEEEEEE-EECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCC-
Confidence 566666 2223344455555455555 44456899999999 677777888999999999999998763
Q ss_pred HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHH
Q psy38 71 SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 71 s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
+.....|+..+... ...|+++|+||+|+... . ....++. ..++ .++.+||++|.|++++|+++.+.+
T Consensus 116 -~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~---~----~~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 116 -VTAADEEVAKILYR---TKKPVVLAVNKLDNTEM---R----ANIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp -SCHHHHHHHHHHTT---CCSCEEEEEECC----------------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred -CChHHHHHHHHHHH---cCCCEEEEEECccchhh---h----hhHHHHH-HcCCCceEEeecccccchHHHHHHHHhhc
Confidence 33344555555543 45789999999998541 1 1111222 2333 677999999999999999998755
No 167
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.40 E-value=2e-12 Score=100.97 Aligned_cols=109 Identities=17% Similarity=0.129 Sum_probs=79.5
Q ss_pred EEEEEEeeCCCcc---------ccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38 32 RIKLQLWDTAGQE---------RFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL 102 (193)
Q Consensus 32 ~~~l~l~D~~g~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 102 (193)
...+.+|||+|.. .+......+++.+|++++|+|+++ +.....|+..... ....|+++|+||.|+
T Consensus 55 ~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~---~~~~P~ilvlNK~D~ 128 (301)
T 1ega_A 55 AYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLR---EGKAPVILAVNKVDN 128 (301)
T ss_dssp TEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHH---SSSSCEEEEEESTTT
T ss_pred CeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH---hcCCCEEEEEECccc
Confidence 4678999999987 233445677889999999999976 4444445544443 235788899999998
Q ss_pred CCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHH
Q psy38 103 LQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 103 ~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i 149 (193)
.. .+....+...+++...++ .++.+||+++.|++++++.+...+
T Consensus 129 ~~---~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 129 VQ---EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp CC---CHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred Cc---cHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence 54 122233445566666776 799999999999999999988654
No 168
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.39 E-value=3.3e-13 Score=119.91 Aligned_cols=128 Identities=15% Similarity=0.089 Sum_probs=85.0
Q ss_pred cceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe-E
Q psy38 15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV-F 93 (193)
Q Consensus 15 t~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-i 93 (193)
+.|+++....+.+ ++....+.||||+|+++|......++..+|++|+|+|+++... .....|+..+... ..| +
T Consensus 342 erGITIdva~v~f-~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~l----gIP~I 415 (1289)
T 3avx_A 342 ARGITINTSHVEY-DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQV----GVPYI 415 (1289)
T ss_dssp ------CCSCEEE-ECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHHH----TCSCE
T ss_pred cCceeEEEEEEEE-cCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHHc----CCCeE
Confidence 3344333333344 4455788999999999998888889999999999999988543 3344555545443 356 7
Q ss_pred EEEeeCCCCCCCCCCCccCHHHHHHHHHhCC-----CcEEEecCCCC--------cCHHHHHHHHHHH
Q psy38 94 ALVGCKLDLLQSGVPREVSEAEAKAFASQND-----ILHFETSSRSG--------FQVENAFTAVTQE 148 (193)
Q Consensus 94 ilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~Sa~~~--------~~i~e~f~~i~~~ 148 (193)
|+|+||+|+.++........++..+++...+ ++++++||++| .|+.++|++|...
T Consensus 416 IVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~ 483 (1289)
T 3avx_A 416 IVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 483 (1289)
T ss_dssp EEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence 8999999996410000112345666776655 68999999999 4677777777653
No 169
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.38 E-value=2.8e-13 Score=111.72 Aligned_cols=117 Identities=15% Similarity=0.078 Sum_probs=69.5
Q ss_pred EEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh---hHHhhHHHHHHHHHHhcCCCCCe-EEEEee
Q psy38 23 RLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR---ASFEHIPVWMMEAKRHIEPHRPV-FALVGC 98 (193)
Q Consensus 23 ~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~p-iilv~n 98 (193)
..+.. ++ ..+.||||+|+++|......++..+|++|+|+|+++. .+|+....|.+.+...... ..| +++|+|
T Consensus 114 ~~~~~-~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~-~vp~iivviN 189 (467)
T 1r5b_A 114 AYFET-EH--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ-GINHLVVVIN 189 (467)
T ss_dssp CEEEC-SS--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT-TCSSEEEEEE
T ss_pred EEEec-CC--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHc-CCCEEEEEEE
Confidence 34555 44 6789999999999998888899999999999999985 3554333333333222212 355 889999
Q ss_pred CCCCCCCCCCC---ccCHHHHHHHHHhC-------CCcEEEecCCCCcCHHHHHH
Q psy38 99 KLDLLQSGVPR---EVSEAEAKAFASQN-------DILHFETSSRSGFQVENAFT 143 (193)
Q Consensus 99 K~Dl~~~~~~~---~v~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~e~f~ 143 (193)
|+|+....... ....++..+++... +++++++||++|.|+.++|.
T Consensus 190 K~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~ 244 (467)
T 1r5b_A 190 KMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp CTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred CccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence 99995411000 11223455666554 35699999999999998773
No 170
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.38 E-value=6.1e-12 Score=106.30 Aligned_cols=110 Identities=18% Similarity=0.161 Sum_probs=78.8
Q ss_pred EEEEeeCCCccccccchhhhccCccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCC-
Q psy38 34 KLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS---RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPR- 109 (193)
Q Consensus 34 ~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~- 109 (193)
.+.||||+|++.|..++..++..+|++|+|+|+++ +.+++.+.. +.. .+.|+++|+||+|+.......
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~----~~vPiIVViNKiDl~~~~~~~~ 142 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM----YRTPFVVAANKIDRIHGWRVHE 142 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH----TTCCEEEEEECGGGSTTCCCCT
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH----cCCeEEEEeccccccccccccc
Confidence 58999999999999999999999999999999998 666665432 222 247899999999996421110
Q ss_pred cc---------CH----------HHHHHHHHhC---------------CCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 110 EV---------SE----------AEAKAFASQN---------------DILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 110 ~v---------~~----------~~~~~~~~~~---------------~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
.. .. .+..+..... .++++.+||++|.|++++++++...+-.
T Consensus 143 ~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 143 GRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp TCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 00 00 0111111111 2379999999999999999999987643
No 171
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.38 E-value=1.5e-12 Score=106.43 Aligned_cols=110 Identities=18% Similarity=0.071 Sum_probs=78.8
Q ss_pred cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCC-
Q psy38 31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPR- 109 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~- 109 (193)
....+.||||+|+++|......++..+|++|+|+|+++... .....|+..+... ...|+++|+||+|+.+....+
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~ 177 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL---GIKHIVVAINKMDLNGFDERVF 177 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHHH
Confidence 34679999999999998888889999999999999987542 2234444433332 234788999999996520000
Q ss_pred ccCHHHHHHHHHhCC-----CcEEEecCCCCcCHHHHHHH
Q psy38 110 EVSEAEAKAFASQND-----ILHFETSSRSGFQVENAFTA 144 (193)
Q Consensus 110 ~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~e~f~~ 144 (193)
....++..+++...+ ++++++||++|.|++++|..
T Consensus 178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 012345566777777 68999999999999986544
No 172
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.37 E-value=1.2e-13 Score=105.70 Aligned_cols=109 Identities=7% Similarity=-0.031 Sum_probs=73.2
Q ss_pred CCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHH---HHHHhc-CCCCCeEEEEeeC-CCCCCCCCCCccCHH
Q psy38 40 TAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMM---EAKRHI-EPHRPVFALVGCK-LDLLQSGVPREVSEA 114 (193)
Q Consensus 40 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~---~i~~~~-~~~~~piilv~nK-~Dl~~~~~~~~v~~~ 114 (193)
.+||++.+.+|+.||.++|++|||+|.+|.+.++ ...-+. .+.... ...+.|++|++|| .|+....+..++...
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4789999999999999999999999999987654 333222 222211 1246899999997 588654222222111
Q ss_pred HHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 115 EAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 115 ~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
....-. ...+.+..|||.+|+|+.|.++|+++.+.
T Consensus 273 L~L~~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 273 LHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp TTGGGG-CSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred cCCccC-CCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 111111 24567889999999999999999998764
No 173
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.36 E-value=1.7e-12 Score=97.90 Aligned_cols=141 Identities=9% Similarity=0.004 Sum_probs=85.4
Q ss_pred eeeeec-----cCCCCC--cceeeEEEEEEEecCCcEEEEEEeeCCCc-----------cccccchhhhccCccEEEEEE
Q psy38 3 TLLYLY-----IQISDP--TVGVDFFARLVTMRDGARIKLQLWDTAGQ-----------ERFRSITKSYYRNSVGALLVY 64 (193)
Q Consensus 3 sll~r~-----~~~~~p--t~~~~~~~~~~~~~~~~~~~l~l~D~~g~-----------~~~~~~~~~~~~~~d~~i~v~ 64 (193)
||+|++ .....| ++..+.....+.+ ++ ..+.||||+|. +.+......+++++|++|+|+
T Consensus 44 tlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 120 (239)
T 3lxx_A 44 ATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KE--TELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVV 120 (239)
T ss_dssp HHHHHHHTSCCSCC-------CCSCEEEEEEE-TT--EEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred HHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CC--ceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 566666 222333 3444555666666 65 56889999994 334444556677899999999
Q ss_pred eCCChhHHhhHHHHHHHHHHhcC-CCCCeEEEEeeCCCCCCCCCCCccC------HHHHHHHHHhCCCcEEEecCCCC--
Q psy38 65 DITSRASFEHIPVWMMEAKRHIE-PHRPVFALVGCKLDLLQSGVPREVS------EAEAKAFASQNDILHFETSSRSG-- 135 (193)
Q Consensus 65 d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~------~~~~~~~~~~~~~~~~~~Sa~~~-- 135 (193)
|++.... ....|+..+..... ....|+++|+||+|+... ..+. .+....++...+..|+.+++..+
T Consensus 121 d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~---~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 195 (239)
T 3lxx_A 121 PLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGD---TNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGA 195 (239)
T ss_dssp ETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHHHHHSSSEEECCTTCCHH
T ss_pred eCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccCCc---ccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCcc
Confidence 9875332 12334444433221 112488899999998652 2222 24567778888887887776643
Q ss_pred ---cCHHHHHHHHHHHHHH
Q psy38 136 ---FQVENAFTAVTQEIYN 151 (193)
Q Consensus 136 ---~~i~e~f~~i~~~i~~ 151 (193)
.++.++|..+...+.+
T Consensus 196 ~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 196 EQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 6888999888776644
No 174
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.30 E-value=8.8e-13 Score=111.91 Aligned_cols=118 Identities=14% Similarity=0.046 Sum_probs=77.7
Q ss_pred eEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChh---HHhhHHHHHHHHHHhcCCCCCeEEE
Q psy38 19 DFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA---SFEHIPVWMMEAKRHIEPHRPVFAL 95 (193)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~piil 95 (193)
+.....+.. . ...+.||||+|+++|......++..+|++|+|+|+++.. +|.....+...+........+|+++
T Consensus 234 d~~~~~~~~-~--~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIV 310 (611)
T 3izq_1 234 SICTSHFST-H--RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLII 310 (611)
T ss_dssp SCSCCEEEC-S--SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEE
T ss_pred eeeeEEEec-C--CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEE
Confidence 344444444 3 467899999999999998899999999999999998742 2211112222222222233456889
Q ss_pred EeeCCCCCCCCCCCccC----HHHHHHHHHhC-----CCcEEEecCCCCcCHHHHH
Q psy38 96 VGCKLDLLQSGVPREVS----EAEAKAFASQN-----DILHFETSSRSGFQVENAF 142 (193)
Q Consensus 96 v~nK~Dl~~~~~~~~v~----~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~e~f 142 (193)
|+||+|+... .... .++...+.... +++++++||++|.||.++.
T Consensus 311 VvNKiDl~~~---~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 311 AMNKMDNVDW---SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp EEECTTTTTT---CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred EEecccccch---hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 9999998651 2222 22333444433 3689999999999999773
No 175
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.29 E-value=7.8e-13 Score=108.84 Aligned_cols=108 Identities=14% Similarity=0.087 Sum_probs=74.5
Q ss_pred cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh---hHHh---hHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR---ASFE---HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~---~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
....+.||||+|+++|......++..+|++|+|+|+++. .+|+ ....++..+.. ...+++++|+||+|+.+
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 347899999999999998889999999999999999875 2443 22233322222 22245889999999963
Q ss_pred CCCCC-ccCHHHHHHHHHhCC-----CcEEEecCCCCcCHHHH
Q psy38 105 SGVPR-EVSEAEAKAFASQND-----ILHFETSSRSGFQVENA 141 (193)
Q Consensus 105 ~~~~~-~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~e~ 141 (193)
....+ ....++..+++...+ ++++++||++|.|+.++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 10000 112234555655554 68999999999999755
No 176
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.26 E-value=6.5e-12 Score=95.32 Aligned_cols=128 Identities=13% Similarity=0.044 Sum_probs=78.5
Q ss_pred EEEEEEEecCCcEEEEEEeeCCCc--------cccccchhhhc----cCccEEEEEEeCCChhHHhhHHHHHHHHHHhcC
Q psy38 20 FFARLVTMRDGARIKLQLWDTAGQ--------ERFRSITKSYY----RNSVGALLVYDITSRASFEHIPVWMMEAKRHIE 87 (193)
Q Consensus 20 ~~~~~~~~~~~~~~~l~l~D~~g~--------~~~~~~~~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~ 87 (193)
.....+.. ++ ..+.||||+|. +.+......++ +++|++|+|+|+++.... ...+++.+.....
T Consensus 60 ~~~~~~~~-~~--~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~--~~~~~~~l~~~~~ 134 (247)
T 3lxw_A 60 CTTGSRRW-DK--CHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQ--DQQAVRQVRDMFG 134 (247)
T ss_dssp CEEEEEEE-TT--EEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHH--HHHHHHHHHHHHC
T ss_pred EEEEEEEE-CC--cEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHH--HHHHHHHHHHHhC
Confidence 33344455 55 66889999996 33333233333 899999999999752211 1223344444322
Q ss_pred C--CCCeEEEEeeCCCCCCCCCCCccC---HHHHHHHHHhCCCcEEEecCCC-----CcCHHHHHHHHHHHHHHH
Q psy38 88 P--HRPVFALVGCKLDLLQSGVPREVS---EAEAKAFASQNDILHFETSSRS-----GFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 88 ~--~~~piilv~nK~Dl~~~~~~~~v~---~~~~~~~~~~~~~~~~~~Sa~~-----~~~i~e~f~~i~~~i~~~ 152 (193)
. ...|+++|+||.|+........+. ......+....+..|+.+++.. +.++.+++..|.+.+.++
T Consensus 135 ~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 135 EDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp GGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 2 257999999999996521111111 1345677777787777666554 579999999988776653
No 177
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.22 E-value=3.8e-13 Score=113.79 Aligned_cols=122 Identities=17% Similarity=0.099 Sum_probs=59.3
Q ss_pred CCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChh---HH---hhHHHHHHHHHHh
Q psy38 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA---SF---EHIPVWMMEAKRH 85 (193)
Q Consensus 12 ~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~ 85 (193)
..+.+.++.....+.. + ...+.||||+|+++|......++..+|++|+|+|+++.. .+ ......+..+...
T Consensus 237 ~~~GiTid~~~~~~~~-~--~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l 313 (592)
T 3mca_A 237 RARGVTMDVASTTFES-D--KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL 313 (592)
T ss_dssp -------------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS
T ss_pred hcCCeeEEeeEEEEEe-C--CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc
Confidence 3455555555555555 3 367899999999999998889999999999999998632 22 1122222222222
Q ss_pred cCCCCCeEEEEeeCCCCCCCCCCC-ccCHHHHHHHH-HhCCC-----cEEEecCCCCcCHH
Q psy38 86 IEPHRPVFALVGCKLDLLQSGVPR-EVSEAEAKAFA-SQNDI-----LHFETSSRSGFQVE 139 (193)
Q Consensus 86 ~~~~~~piilv~nK~Dl~~~~~~~-~v~~~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~ 139 (193)
..+++|+|+||+|+......+ .....+...+. ...++ +++.+||++|.||.
T Consensus 314 ---gip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 314 ---GISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp ---SCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred ---CCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 223488999999985410000 01123344444 44454 69999999999998
No 178
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.21 E-value=3.8e-11 Score=102.96 Aligned_cols=69 Identities=17% Similarity=0.041 Sum_probs=54.0
Q ss_pred CcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38 30 GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL 103 (193)
Q Consensus 30 ~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 103 (193)
...+.+.+|||+|+.+|......+++.+|++++++|+++..... ...|+..+... ..|+++|+||.|+.
T Consensus 71 ~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~~----~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 71 FRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAERL----GLPRMVVVTKLDKG 139 (665)
T ss_dssp ETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHHT----TCCEEEEEECGGGC
T ss_pred eCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHHc----cCCEEEEecCCchh
Confidence 34588999999999999888899999999999999987753332 23444444442 47888999999985
No 179
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.18 E-value=7.9e-11 Score=98.39 Aligned_cols=69 Identities=19% Similarity=0.055 Sum_probs=52.9
Q ss_pred cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
..+.+.||||+|+.+|......++..+|++|+|+|+++.... |...+.........|+++|+||+|+..
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-----~t~~~~~~~~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 80 HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-----RTRKLMEVTRLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-----HHHHHHHHHTTTTCCEEEEEECTTSCC
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchH-----HHHHHHHHHHHcCCCEEEEEcCcCCcc
Confidence 447899999999999988888899999999999999875321 222223333334578999999999965
No 180
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.18 E-value=6.6e-11 Score=86.98 Aligned_cols=135 Identities=16% Similarity=0.126 Sum_probs=80.5
Q ss_pred eeeeeccC-----CCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccc----------cccchhhhc---cCccEEEEEE
Q psy38 3 TLLYLYIQ-----ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQER----------FRSITKSYY---RNSVGALLVY 64 (193)
Q Consensus 3 sll~r~~~-----~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----------~~~~~~~~~---~~~d~~i~v~ 64 (193)
||++++.. .+.|+.|..+....+.+ ++ .+.+|||+|... +......++ ..++++++++
T Consensus 41 TLl~~l~g~~~~~~~~~~~G~~~~~~~~~~-~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 116 (210)
T 1pui_A 41 SALNTLTNQKSLARTSKTPGRTQLINLFEV-AD---GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLM 116 (210)
T ss_dssp HHHTTTCCC-------------CCEEEEEE-ET---TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHhCCCccccccCCCccceeeEEEEe-cC---CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEE
Confidence 56677632 33677776555445555 33 477999999742 222333444 5789999999
Q ss_pred eCCChhHHhh--HHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC--CcEEEecCCCCcCHHH
Q psy38 65 DITSRASFEH--IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND--ILHFETSSRSGFQVEN 140 (193)
Q Consensus 65 d~~~~~s~~~--~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~e 140 (193)
|++++.++.+ +..|+. . ...|+++|+||+|+.+.. .+......+..++...+ +.++++||+++.|+++
T Consensus 117 d~~~~~~~~~~~~~~~~~---~----~~~~~~~v~nK~D~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~ 188 (210)
T 1pui_A 117 DIRHPLKDLDQQMIEWAV---D----SNIAVLVLLTKADKLASG-ARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDK 188 (210)
T ss_dssp ETTSCCCHHHHHHHHHHH---H----TTCCEEEEEECGGGSCHH-HHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHH
T ss_pred ECCCCCchhHHHHHHHHH---H----cCCCeEEEEecccCCCch-hHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHH
Confidence 9988654432 233332 1 247888899999985410 01112345555665544 4788999999999999
Q ss_pred HHHHHHHHH
Q psy38 141 AFTAVTQEI 149 (193)
Q Consensus 141 ~f~~i~~~i 149 (193)
++.+|.+.+
T Consensus 189 l~~~l~~~~ 197 (210)
T 1pui_A 189 LRQKLDTWF 197 (210)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998765
No 181
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.16 E-value=2.3e-11 Score=94.35 Aligned_cols=111 Identities=16% Similarity=0.075 Sum_probs=74.6
Q ss_pred EEEEEeeCCCcc-------------ccccchhhhccCccEEE-EEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEee
Q psy38 33 IKLQLWDTAGQE-------------RFRSITKSYYRNSVGAL-LVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGC 98 (193)
Q Consensus 33 ~~l~l~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 98 (193)
..+.||||+|.. .+..+...+++.++.+| +|+|+++..+..+...|+..+. ....|+++|+|
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~----~~~~~~i~V~N 200 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVIT 200 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC----TTCSSEEEEEE
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC----CCCCeEEEEEE
Confidence 578999999964 34456677888888777 6999987655444434544443 34578999999
Q ss_pred CCCCCCCCCCCccCHHHHHHHHHh--CC-CcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 99 KLDLLQSGVPREVSEAEAKAFASQ--ND-ILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 99 K~Dl~~~~~~~~v~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
|+|+... .....+........ .+ .+++++||++|.|++++|.++.+..-
T Consensus 201 K~Dl~~~---~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 201 KLDLMDE---GTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK 252 (299)
T ss_dssp CGGGSCT---TCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred ccccCCC---CchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence 9999652 22122222110011 13 36788999999999999999988443
No 182
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.14 E-value=1.7e-10 Score=93.61 Aligned_cols=122 Identities=13% Similarity=0.086 Sum_probs=86.6
Q ss_pred EEEecCCcEEEEEEeeCCCccc----cccchhhh---ccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcC-CCCCeEEE
Q psy38 24 LVTMRDGARIKLQLWDTAGQER----FRSITKSY---YRNSVGALLVYDITSRASFEHIPVWMMEAKRHIE-PHRPVFAL 95 (193)
Q Consensus 24 ~~~~~~~~~~~l~l~D~~g~~~----~~~~~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piil 95 (193)
.+.+ ++ ...+.+||++|... +..+...+ ++.++.+++++|++ ..++.++..|..++..+.. ....|.++
T Consensus 198 ~V~~-~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~IL 274 (416)
T 1udx_A 198 VVEV-SE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLV 274 (416)
T ss_dssp EEEC-SS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEE
T ss_pred EEEe-cC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEE
Confidence 3455 33 25678999999743 22233333 45799999999998 6678888888777766521 12357779
Q ss_pred EeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 96 VGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 96 v~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
|+||.|+.. . ...+...+.+...++.++.+||+++.|++++|.+|.+.+....
T Consensus 275 VlNKlDl~~----~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 275 ALNKVDLLE----E-EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTP 327 (416)
T ss_dssp EEECCTTSC----H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred EEECCChhh----H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhcc
Confidence 999999865 2 2234444555566789999999999999999999999887644
No 183
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.07 E-value=3.8e-10 Score=90.32 Aligned_cols=96 Identities=21% Similarity=0.233 Sum_probs=73.0
Q ss_pred CccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHH----
Q psy38 42 GQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAK---- 117 (193)
Q Consensus 42 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~---- 117 (193)
..++|.++.+.+++.++++++|+|+++++ ..|...+.+... +.|+++|+||+||.. .....+...
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~--~~p~ilV~NK~DL~~----~~~~~~~~~~~l~ 123 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG--NNKVLLVGNKADLIP----KSVKHDKVKHWMR 123 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS--SSCEEEEEECGGGSC----TTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC--CCcEEEEEEChhcCC----cccCHHHHHHHHH
Confidence 45789999999999999999999999853 446666666532 578889999999965 223333333
Q ss_pred HHHHhCCC---cEEEecCCCCcCHHHHHHHHHHH
Q psy38 118 AFASQNDI---LHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 118 ~~~~~~~~---~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
.+++..++ .++.+||++|.|+++++..+.+.
T Consensus 124 ~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 124 YSAKQLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 34666777 79999999999999999998653
No 184
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.07 E-value=4.3e-10 Score=96.79 Aligned_cols=68 Identities=21% Similarity=0.274 Sum_probs=56.7
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
.+.+.||||+|+.+|...+..+++.+|++|+|+|+++..+++....|.. +... +.|+++|+||+|+..
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~----~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY----KVPRIAFANKMDKTG 143 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT----TCCEEEEEECTTSTT
T ss_pred CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc----CCCEEEEEECCCccc
Confidence 4789999999999998889999999999999999998777776666654 3332 478889999999865
No 185
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.07 E-value=5.8e-11 Score=92.60 Aligned_cols=116 Identities=16% Similarity=0.220 Sum_probs=65.3
Q ss_pred CCcEEEEEEeeCCCc-------cccccchh-------hhccCc-------------cEEEEEEeCCChhHHhhHHHHHHH
Q psy38 29 DGARIKLQLWDTAGQ-------ERFRSITK-------SYYRNS-------------VGALLVYDITSRASFEHIPVWMME 81 (193)
Q Consensus 29 ~~~~~~l~l~D~~g~-------~~~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~~~~~~ 81 (193)
++....+.+||++|. +.+..+.. .++.+. ++++++.+.+. .+++.+.. +.
T Consensus 72 ~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~ 148 (301)
T 2qnr_A 72 RGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AF 148 (301)
T ss_dssp --CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HH
T ss_pred CCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HH
Confidence 556688999999998 55555554 455443 33444444322 23444431 22
Q ss_pred HHHhcCCCCCeEEEEeeCCCCCCCCCCCc--cCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38 82 AKRHIEPHRPVFALVGCKLDLLQSGVPRE--VSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV 153 (193)
Q Consensus 82 i~~~~~~~~~piilv~nK~Dl~~~~~~~~--v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~ 153 (193)
+... . ...++++|+||+|+.. .+. ...+++.+++..+++++|++||+++ |++++|.++.+.+....
T Consensus 149 l~~l-~-~~~~iilV~~K~Dl~~---~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~ 216 (301)
T 2qnr_A 149 MKAI-H-NKVNIVPVIAKADTLT---LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI 216 (301)
T ss_dssp HHHH-T-TTSCEEEEECCGGGSC---HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred HHHH-H-hcCCEEEEEEeCCCCC---HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence 2222 2 2468889999999865 222 2346778889999999999999999 99999999999887544
No 186
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.04 E-value=2.3e-09 Score=92.39 Aligned_cols=70 Identities=20% Similarity=0.230 Sum_probs=55.5
Q ss_pred CcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 30 GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 30 ~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
+..+.+.||||+|+.+|......+++.+|++|+|+|+++....+....|. .+.. ...|+++|+||+|+..
T Consensus 79 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~----~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 79 YEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK----YKVPRIAFVNKMDRMG 148 (704)
T ss_pred CCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH----cCCCEEEEEeCCCccc
Confidence 34588999999999999888899999999999999999876555444443 2332 2478889999999865
No 187
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.03 E-value=7e-10 Score=84.71 Aligned_cols=82 Identities=13% Similarity=0.056 Sum_probs=59.2
Q ss_pred eEEEEEEEecCCcEEEEEEeeCCCccccccchhhhcc---------CccEEEEEEeCCChhHHhhH-HHHHHHHHHhcCC
Q psy38 19 DFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYR---------NSVGALLVYDITSRASFEHI-PVWMMEAKRHIEP 88 (193)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~---------~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~ 88 (193)
+.....+.. ++ ..+.+|||+|+.++......+++ ++|++++|++++... +... ..|+..+......
T Consensus 73 ~~~~~~~~~-~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~ 148 (262)
T 3def_A 73 RPVMVSRTM-GG--FTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGK 148 (262)
T ss_dssp CCEEEEEEE-TT--EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCG
T ss_pred eeEEEEEEE-CC--eeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhch
Confidence 444555555 55 58899999999888766655554 789999999987654 5544 4677777776532
Q ss_pred C-CCeEEEEeeCCCCCC
Q psy38 89 H-RPVFALVGCKLDLLQ 104 (193)
Q Consensus 89 ~-~~piilv~nK~Dl~~ 104 (193)
. ..|+++|+||+|+..
T Consensus 149 ~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 149 EIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp GGGGGEEEEEECTTCCC
T ss_pred hhhcCEEEEEeCcccCC
Confidence 2 248889999999854
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.98 E-value=3.4e-10 Score=90.31 Aligned_cols=112 Identities=13% Similarity=0.125 Sum_probs=78.2
Q ss_pred EEEEEeeCCCcccc-------------ccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeC
Q psy38 33 IKLQLWDTAGQERF-------------RSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCK 99 (193)
Q Consensus 33 ~~l~l~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 99 (193)
..+.+|||+|..++ ..+...|++++|++|++++.++.+... ..|+..+.. ......|+++|+||
T Consensus 136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~-~~~~~~~~i~V~nK 212 (360)
T 3t34_A 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISRE-VDPSGDRTFGVLTK 212 (360)
T ss_dssp CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHH-SCTTCTTEEEEEEC
T ss_pred CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHH-hcccCCCEEEEEeC
Confidence 46899999998776 456678999999999999876543322 233333333 23445788899999
Q ss_pred CCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 100 LDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 100 ~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
+|+... .....+....++...+.+|+.+++.++.++++.+..+.....
T Consensus 213 ~Dl~~~---~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~~ 260 (360)
T 3t34_A 213 IDLMDK---GTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARKR 260 (360)
T ss_dssp GGGCCT---TCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHHHH
T ss_pred CccCCC---cccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHHHH
Confidence 998752 334444444455557789999999999999887766554443
No 189
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.98 E-value=3e-12 Score=95.38 Aligned_cols=58 Identities=12% Similarity=0.019 Sum_probs=45.1
Q ss_pred CeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC--CCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38 91 PVFALVGCKLDLLQSGVPREVSEAEAKAFASQN--DILHFETSSRSGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 91 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~e~f~~i~~~i~~ 151 (193)
.|.++|+||+|+.. ...+..++..+++... +++++++||++|.|++++|.++.+.+..
T Consensus 165 ~~~iiv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 165 TADLIVINKIDLAD---AVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TCSEEEEECGGGHH---HHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCc---hhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 45679999999854 1234566666666653 5799999999999999999999887653
No 190
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.97 E-value=8.4e-10 Score=95.07 Aligned_cols=111 Identities=14% Similarity=0.127 Sum_probs=77.5
Q ss_pred EEEEeeCCCccc---cccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCc
Q psy38 34 KLQLWDTAGQER---FRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPRE 110 (193)
Q Consensus 34 ~l~l~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~ 110 (193)
.+.||||||... .......+++++|++|+|+|++++.+..+...|...+.. ...|+++|+||+|+... ..
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~----~~~~iiiVlNK~Dl~~~---~~ 247 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG----RGLTVFFLVNAWDQVRE---SL 247 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT----SCCCEEEEEECGGGGGG---GC
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh----hCCCEEEEEECcccccc---cc
Confidence 589999999755 334556788999999999999988777776656544332 24678899999998542 11
Q ss_pred cCHH----------HHH-----HHHHh--------CCCcEEEecCC--------------CCcCHHHHHHHHHHHHHH
Q psy38 111 VSEA----------EAK-----AFASQ--------NDILHFETSSR--------------SGFQVENAFTAVTQEIYN 151 (193)
Q Consensus 111 v~~~----------~~~-----~~~~~--------~~~~~~~~Sa~--------------~~~~i~e~f~~i~~~i~~ 151 (193)
++.+ ... .+... ...+++.|||+ ++.|+++++.++.+.+..
T Consensus 248 ~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 248 IDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 1110 111 11111 12479999999 999999999999887654
No 191
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.96 E-value=5.8e-09 Score=89.83 Aligned_cols=68 Identities=24% Similarity=0.217 Sum_probs=55.9
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
...+.||||+|+.+|......+++.+|++|+|+|+++..+++....|.. +... ..|+++|+||+|+..
T Consensus 74 ~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~----~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY----GVPRIVFVNKMDKLG 141 (693)
T ss_dssp TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT----TCCEEEEEECTTSTT
T ss_pred CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc----CCCEEEEEECCCccc
Confidence 3789999999999998888999999999999999998776666655543 4432 478889999999865
No 192
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.93 E-value=1e-09 Score=87.83 Aligned_cols=97 Identities=19% Similarity=0.184 Sum_probs=70.7
Q ss_pred CCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHH---
Q psy38 41 AGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAK--- 117 (193)
Q Consensus 41 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~--- 117 (193)
..++.|.+..+.+++.++++++|+|++++++ .|...+..... +.|+++|+||+||.. .....+...
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~--~~piilV~NK~DLl~----~~~~~~~~~~~l 124 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA--DNPILLVGNKADLLP----RSVKYPKLLRWM 124 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT--TSCEEEEEECGGGSC----TTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC--CCCEEEEEEChhcCC----CccCHHHHHHHH
Confidence 3578899999999999999999999998763 34444444432 578889999999965 223333333
Q ss_pred -HHHHhCCC---cEEEecCCCCcCHHHHHHHHHHH
Q psy38 118 -AFASQNDI---LHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 118 -~~~~~~~~---~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
.+++..++ .++.+||++|.|++++++.+.+.
T Consensus 125 ~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 125 RRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp HHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 33566676 68999999999999999988654
No 193
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.88 E-value=9.7e-10 Score=89.19 Aligned_cols=126 Identities=15% Similarity=0.178 Sum_probs=60.8
Q ss_pred CcceeeEEEEEEEecCCcEEEEEEeeCCCccccc-------c------------------chhhhccCccEEEEEEeCCC
Q psy38 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFR-------S------------------ITKSYYRNSVGALLVYDITS 68 (193)
Q Consensus 14 pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-------~------------------~~~~~~~~~d~~i~v~d~~~ 68 (193)
+|++.+.....+.. ++....+.+||++|...+. . +.+.++.++++.+++|..+.
T Consensus 70 ~t~~~~~i~~v~q~-~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldeP 148 (418)
T 2qag_C 70 KTVQVEQSKVLIKE-GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 148 (418)
T ss_dssp -CCEEEEEECC-------CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC
T ss_pred cceeeeeEEEEEec-CCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecC
Confidence 44444433333333 4555689999999976531 1 12345566666555555543
Q ss_pred h-hHHhhHH-HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCH--HHHHHHHHhCCCcEEEecCCCCcCHHHHHHH
Q psy38 69 R-ASFEHIP-VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE--AEAKAFASQNDILHFETSSRSGFQVENAFTA 144 (193)
Q Consensus 69 ~-~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~ 144 (193)
. .++..+. .|+..+.. ..|+|+|+||+|+.. .+.+.. ..+.+++...++++|++|+.++.++.++|..
T Consensus 149 t~~~L~~~d~~~lk~L~~-----~v~iIlVinK~Dll~---~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~ 220 (418)
T 2qag_C 149 SGHGLKPLDIEFMKRLHE-----KVNIIPLIAKADTLT---PEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKK 220 (418)
T ss_dssp -CCSCCHHHHHHHHHHTT-----TSEEEEEEESTTSSC---HHHHHHHHHHHHHHHHHHTCCCCCCC-------------
T ss_pred cccCCCHHHHHHHHHHhc-----cCcEEEEEEcccCcc---HHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHH
Confidence 2 3455553 56665542 579999999999865 234443 6677778888999999999999999998877
Q ss_pred HHHH
Q psy38 145 VTQE 148 (193)
Q Consensus 145 i~~~ 148 (193)
+...
T Consensus 221 l~~~ 224 (418)
T 2qag_C 221 IKDR 224 (418)
T ss_dssp ----
T ss_pred HHhh
Confidence 7653
No 194
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.88 E-value=2.1e-09 Score=82.36 Aligned_cols=73 Identities=11% Similarity=0.008 Sum_probs=51.3
Q ss_pred cEEEEEEeeCCCccccccchhh---------hccCccEEEEEEeCCChhHHhhH-HHHHHHHHHhcCCC-CCeEEEEeeC
Q psy38 31 ARIKLQLWDTAGQERFRSITKS---------YYRNSVGALLVYDITSRASFEHI-PVWMMEAKRHIEPH-RPVFALVGCK 99 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~~~~~~---------~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~-~~piilv~nK 99 (193)
....+.+|||+|..++...... ....+|++++|+|++.. ++... ..|+..+....... ..|+++|+||
T Consensus 85 ~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK 163 (270)
T 1h65_A 85 AGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTH 163 (270)
T ss_dssp TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred CCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEEC
Confidence 3477999999999776543321 23479999999998653 45544 46777777654321 2589999999
Q ss_pred CCCCC
Q psy38 100 LDLLQ 104 (193)
Q Consensus 100 ~Dl~~ 104 (193)
+|+..
T Consensus 164 ~Dl~~ 168 (270)
T 1h65_A 164 AQFSP 168 (270)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 99864
No 195
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.88 E-value=3.7e-09 Score=80.28 Aligned_cols=109 Identities=13% Similarity=0.035 Sum_probs=66.8
Q ss_pred EEEEEeeCCCccccccchh------hhccCccEEEEEEeCCCh---hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38 33 IKLQLWDTAGQERFRSITK------SYYRNSVGALLVYDITSR---ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL 103 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 103 (193)
+.+.||||+|+.+...... ..+.+ +++|++.|.... ..+.....+....... ...|+++|+||+|+.
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLL 184 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc---cCCCeEEEEeccccc
Confidence 5789999999876543221 24466 888888887542 2332222222111111 236888999999986
Q ss_pred CCCCCCccCHHHHHH----------------------------HHHhCC--CcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 104 QSGVPREVSEAEAKA----------------------------FASQND--ILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 104 ~~~~~~~v~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
.. ..+ ++..+ ++...+ ++++++||+++.|++++|.++.+.+-
T Consensus 185 ~~---~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 185 SE---EEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp CH---HHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cc---ccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 41 111 11111 123322 48999999999999999999987653
No 196
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.86 E-value=4.3e-09 Score=82.16 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=67.5
Q ss_pred EEEEEeeCCCccc-------------cccchhhhccCccEEEEEEeCCChh-HHhhHHHHHHHHHHhcCCCCCeEEEEee
Q psy38 33 IKLQLWDTAGQER-------------FRSITKSYYRNSVGALLVYDITSRA-SFEHIPVWMMEAKRHIEPHRPVFALVGC 98 (193)
Q Consensus 33 ~~l~l~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~n 98 (193)
..+.||||+|..+ +......+++.+|++|+|+|.++.. .-.+...++..+ .....|+++|+|
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~----~~~~~~~i~v~N 206 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV----DPEGKRTIGVIT 206 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH----CSSCSSEEEEEE
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh----CCCCCcEEEEEc
Confidence 5789999999753 3445677889999999999975432 111212222222 234578999999
Q ss_pred CCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCC------CcCHHHHHHHHHHHHH
Q psy38 99 KLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS------GFQVENAFTAVTQEIY 150 (193)
Q Consensus 99 K~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~------~~~i~e~f~~i~~~i~ 150 (193)
|+|+... .....+.........+..++.+|+.+ +.|+.+++..+...+-
T Consensus 207 K~Dl~~~---~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 207 KLDLMDK---GTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp CTTSSCS---SCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred CcccCCc---chHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 9999652 22122222111112235677776554 6788888888766553
No 197
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.84 E-value=2.1e-09 Score=85.68 Aligned_cols=104 Identities=13% Similarity=0.009 Sum_probs=69.5
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS 112 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~ 112 (193)
+.+.||||+|... .....+..+|++++|+|.+..+.+..+..+ ....|+++|+||+|+... ...
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~---------~~~~p~ivVlNK~Dl~~~---~~~- 235 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG---------VLELADIVVVNKADGEHH---KEA- 235 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT---------SGGGCSEEEEECCCGGGH---HHH-
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh---------HhhcCCEEEEECCCCcCh---hHH-
Confidence 6788999999533 233446889999999998765544333211 112477899999998531 111
Q ss_pred HHHHHHHHHh----------CCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 113 EAEAKAFASQ----------NDILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 113 ~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
.....++... ++.+++.+||++|.|+++++++|.+.+...
T Consensus 236 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~ 285 (355)
T 3p32_A 236 RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVL 285 (355)
T ss_dssp HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 1111122221 257899999999999999999999887653
No 198
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.82 E-value=5.9e-09 Score=77.11 Aligned_cols=104 Identities=13% Similarity=-0.011 Sum_probs=67.6
Q ss_pred EEEEEeeCCCccccccchhhh-ccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc
Q psy38 33 IKLQLWDTAGQERFRSITKSY-YRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV 111 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v 111 (193)
..+.+|||+|+-. .+.+ ....+.+++|+|+++... ....+.. .. ..|+++|+||+|+.. ....
T Consensus 109 ~d~iiidt~G~~~----~~~~~~~~~~~~i~vvd~~~~~~--~~~~~~~-~~------~~~~iiv~NK~Dl~~---~~~~ 172 (221)
T 2wsm_A 109 CDLLLIENVGNLI----CPVDFDLGENYRVVMVSVTEGDD--VVEKHPE-IF------RVADLIVINKVALAE---AVGA 172 (221)
T ss_dssp CSEEEEEEEEBSS----GGGGCCCSCSEEEEEEEGGGCTT--HHHHCHH-HH------HTCSEEEEECGGGHH---HHTC
T ss_pred CCEEEEeCCCCCC----CCchhccccCcEEEEEeCCCcch--hhhhhhh-hh------hcCCEEEEecccCCc---chhh
Confidence 5678999998511 1111 135688999999876431 1111111 11 256779999999854 1223
Q ss_pred CHHHHHHHHHhC--CCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 112 SEAEAKAFASQN--DILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 112 ~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
..++..+++... +++++++||++|.|++++|.++.+.+...
T Consensus 173 ~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 173 DVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp CHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 555565655543 46899999999999999999999877543
No 199
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.78 E-value=1.3e-08 Score=89.36 Aligned_cols=70 Identities=26% Similarity=0.254 Sum_probs=59.0
Q ss_pred CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38 29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL 103 (193)
Q Consensus 29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 103 (193)
++..+.+.||||+|+.+|...+..+++.+|++|+|+|+++..+++....|.... . ...|+++|+||+|+.
T Consensus 94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINKVDRA 163 (842)
T ss_dssp CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEECHHHH
T ss_pred cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H----cCCCeEEEEECCCcc
Confidence 456799999999999999999999999999999999999987787766665433 2 247888999999985
No 200
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.73 E-value=3.3e-08 Score=82.92 Aligned_cols=69 Identities=17% Similarity=0.104 Sum_probs=54.1
Q ss_pred cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
+...+.|.||||+.+|..-....++=+|++|+|+|+...-.-+....| .....+ +.|++++.||.|...
T Consensus 98 ~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~----~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 98 RDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR----ATPVMTFVNKMDREA 166 (548)
T ss_dssp TTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT----TCCEEEEEECTTSCC
T ss_pred CCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh----CCceEEEEecccchh
Confidence 347899999999999998888899999999999999875444444445 334433 378889999999865
No 201
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.63 E-value=8.8e-08 Score=73.89 Aligned_cols=100 Identities=12% Similarity=0.012 Sum_probs=69.5
Q ss_pred eCCCcc-ccccchhhhccCccEEEEEEeCCChhHHhh--HHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHH
Q psy38 39 DTAGQE-RFRSITKSYYRNSVGALLVYDITSRASFEH--IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAE 115 (193)
Q Consensus 39 D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~ 115 (193)
..||+. +........++++|+++.|+|+.++.+... +..|+ ...|+++|+||+||.. . ...+.
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l---------~~kp~ilVlNK~DL~~----~-~~~~~ 70 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL---------KNKPRIMLLNKADKAD----A-AVTQQ 70 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC---------SSSCEEEEEECGGGSC----H-HHHHH
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH---------CCCCEEEEEECcccCC----H-HHHHH
Confidence 456764 344455677899999999999999876653 33332 3578889999999954 1 11222
Q ss_pred HHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 116 AKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 116 ~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
..++....+++++.+||.++.|+++++..+.+.+...
T Consensus 71 ~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 71 WKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 3445555678999999999999999999888776543
No 202
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.59 E-value=2.3e-08 Score=80.70 Aligned_cols=48 Identities=10% Similarity=0.062 Sum_probs=32.5
Q ss_pred CeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHH
Q psy38 91 PVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFT 143 (193)
Q Consensus 91 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~ 143 (193)
.|+++|+||.|+.. .. ......+.....+.+++.+||+.+.++.++++
T Consensus 215 kP~i~v~NK~D~~~---~~--~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 215 KPMVIAANKADAAS---DE--QIKRLVREEEKRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp SCEEEEEECGGGSC---HH--HHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred CCEEEEEeCccccc---hH--HHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence 79999999999742 11 11222233333467899999999999887644
No 203
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.57 E-value=9e-09 Score=81.89 Aligned_cols=109 Identities=16% Similarity=0.112 Sum_probs=65.3
Q ss_pred EEEEEeeCCCcc-------------ccccchhhhccCccEEEEE-EeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEee
Q psy38 33 IKLQLWDTAGQE-------------RFRSITKSYYRNSVGALLV-YDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGC 98 (193)
Q Consensus 33 ~~l~l~D~~g~~-------------~~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 98 (193)
..+.||||+|.. .+..+...|+.+.+.+|++ .+.+....-.+...++..+ .....|+++|+|
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~----~~~~~~~i~V~N 205 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEV----DPQGQRTIGVIT 205 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHH----CTTCTTEEEEEE
T ss_pred CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHh----CcCCCceEEEec
Confidence 568999999963 3445666777776665554 4544322211222233322 344678999999
Q ss_pred CCCCCCCCCCCccCHHHHHH--HHHhCCC-cEEEecCCCCcCHHHHHHHHHHH
Q psy38 99 KLDLLQSGVPREVSEAEAKA--FASQNDI-LHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 99 K~Dl~~~~~~~~v~~~~~~~--~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
|+|+.+. .....+.... +....++ +++.+||+++.|++++|+++.+.
T Consensus 206 K~Dl~~~---~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 206 KLDLMDE---GTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp CGGGSCT---TCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred cccccCc---chhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence 9999652 1111111110 1111232 56789999999999999999874
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.49 E-value=2e-07 Score=73.71 Aligned_cols=103 Identities=10% Similarity=-0.080 Sum_probs=64.3
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS 112 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~ 112 (193)
+.+.||||+|..... ......+|++++|+|.+....+..+.. ... ..|.++|+||+|+... ..+.
T Consensus 149 ~~i~liDTpG~~~~~---~~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~~------~~p~ivv~NK~Dl~~~---~~~~ 213 (341)
T 2p67_A 149 YDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKK---GLM------EVADLIVINKDDGDNH---TNVA 213 (341)
T ss_dssp CSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCH---HHH------HHCSEEEECCCCTTCH---HHHH
T ss_pred CCEEEEeCCCccchH---HHHHHhCCEEEEEEeCCccHHHHHHHH---hhh------cccCEEEEECCCCCCh---HHHH
Confidence 578999999975433 234689999999999976544332211 111 1466799999998541 1111
Q ss_pred H--HHHHHHHHhC-------CCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 113 E--AEAKAFASQN-------DILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 113 ~--~~~~~~~~~~-------~~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
. ++..+..... ..+++.+||++|.|+++++++|.+.+.
T Consensus 214 ~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 214 IARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1 1122211111 357899999999999999999998764
No 205
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.45 E-value=1.4e-06 Score=69.39 Aligned_cols=99 Identities=8% Similarity=-0.055 Sum_probs=64.9
Q ss_pred EEEEEeeCCCccccc----cchh---hhccCccEEEEEEeCCCh----------hHHhhHHHHHHHHH------------
Q psy38 33 IKLQLWDTAGQERFR----SITK---SYYRNSVGALLVYDITSR----------ASFEHIPVWMMEAK------------ 83 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~----~~~~---~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~------------ 83 (193)
..+.+|||+|..++. .+.. .+++++|++++|+|+++. +++.++..+..++.
T Consensus 66 ~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~ 145 (363)
T 1jal_A 66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQ 145 (363)
T ss_dssp CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHH
Confidence 579999999987653 2332 357899999999999862 23444333222221
Q ss_pred ---------------------------H--------------------hcCCCCCeEEEEeeCCCCCCCCCCCccCHHHH
Q psy38 84 ---------------------------R--------------------HIEPHRPVFALVGCKLDLLQSGVPREVSEAEA 116 (193)
Q Consensus 84 ---------------------------~--------------------~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~ 116 (193)
. +......|+++++|+.|..- .........
T Consensus 146 ~~~k~~k~g~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~---~~n~~~~~v 222 (363)
T 1jal_A 146 RLQKRAKGGDKEAKFELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGF---ENNPYLDRV 222 (363)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCS---SSCHHHHHH
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccc---cccHHHHHH
Confidence 0 00122489999999998642 112345667
Q ss_pred HHHHHhCCCcEEEecCCC
Q psy38 117 KAFASQNDILHFETSSRS 134 (193)
Q Consensus 117 ~~~~~~~~~~~~~~Sa~~ 134 (193)
.+++...+.+++.+||+.
T Consensus 223 ~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 223 REIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp HHHHHHTTCEEEEECHHH
T ss_pred HHHHHHcCCCEEEechHH
Confidence 788888889999999763
No 206
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.42 E-value=9.6e-08 Score=81.57 Aligned_cols=71 Identities=14% Similarity=0.070 Sum_probs=53.1
Q ss_pred CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
..+...+.|.||||+.+|.......++-+|++|+|+|+...-.-+....| ..+..+. .|.+++.||.|...
T Consensus 63 ~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~~----lp~i~~INKmDr~~ 133 (638)
T 3j25_A 63 QWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKMG----IPTIFFINKIDQNG 133 (638)
T ss_dssp BCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHHT----CSCEECCEECCSSS
T ss_pred EECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHcC----CCeEEEEecccccc
Confidence 33447789999999999998888899999999999999875333333334 3444442 56679999999854
No 207
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.42 E-value=1.3e-06 Score=69.24 Aligned_cols=102 Identities=12% Similarity=-0.041 Sum_probs=61.2
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS 112 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~ 112 (193)
+.+.|+||+|... ......+.+|++++|+|++.....+.+.. .+ ...|.++|+||+|+... ...
T Consensus 167 ~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~---~~~- 230 (349)
T 2www_A 167 YDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLI---VPA- 230 (349)
T ss_dssp CSEEEEECCCC-----CHHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGH---HHH-
T ss_pred CCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCc---hhH-
Confidence 4678999999632 12445778999999999986543322211 11 12466799999998431 010
Q ss_pred HHHHHHHHH----------hCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 113 EAEAKAFAS----------QNDILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 113 ~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
......+.. .++.+++.+||++|.|+++++++|.+.+-
T Consensus 231 ~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 231 RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 011112211 12457899999999999999999988763
No 208
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.25 E-value=4.2e-07 Score=76.32 Aligned_cols=67 Identities=15% Similarity=0.209 Sum_probs=51.0
Q ss_pred EEEEeeCCCccc-----------cccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38 34 KLQLWDTAGQER-----------FRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL 102 (193)
Q Consensus 34 ~l~l~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 102 (193)
.+.||||+|... +......++..+|++|+|+|+++.........|+..+.. ...|+++|+||+|+
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~pvilVlNK~Dl 230 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HEDKIRVVLNKADM 230 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGGGEEEEEECGGG
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCCCEEEEEECCCc
Confidence 588999999865 445566788999999999999875445555666665543 24688999999998
Q ss_pred CC
Q psy38 103 LQ 104 (193)
Q Consensus 103 ~~ 104 (193)
..
T Consensus 231 ~~ 232 (550)
T 2qpt_A 231 VE 232 (550)
T ss_dssp SC
T ss_pred cC
Confidence 64
No 209
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.24 E-value=1e-05 Score=69.94 Aligned_cols=69 Identities=22% Similarity=0.197 Sum_probs=53.3
Q ss_pred cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
..+.+.|.||||+.+|..-....++=+|++|+|+|+...-.-+...-|.. ...+ +.|.++|.||.|...
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~-a~~~----~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQ-ANKY----GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHH----TCCEEEEEECSSSTT
T ss_pred CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHH-HHHc----CCCeEEEEccccccC
Confidence 36899999999999998888888999999999999987543333333444 3433 267789999999854
No 210
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.10 E-value=2.5e-06 Score=65.07 Aligned_cols=90 Identities=11% Similarity=0.011 Sum_probs=60.7
Q ss_pred CCccc-cccchhhhccCccEEEEEEeCCChhHHhh--HHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHH
Q psy38 41 AGQER-FRSITKSYYRNSVGALLVYDITSRASFEH--IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAK 117 (193)
Q Consensus 41 ~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~ 117 (193)
||+.. ........++++|++++|+|+.++.+... +. |+ ..|.++|.||+||... ...+...
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll----------~k~~iivlNK~DL~~~-----~~~~~~~ 68 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS----------RKETIILLNKVDIADE-----KTTKKWV 68 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT----------TSEEEEEEECGGGSCH-----HHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc----------CCCcEEEEECccCCCH-----HHHHHHH
Confidence 45532 22345667889999999999998866543 22 21 4688899999999541 1112334
Q ss_pred HHHHhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38 118 AFASQNDILHFETSSRSGFQVENAFTAVTQ 147 (193)
Q Consensus 118 ~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~ 147 (193)
++.++.++++ .+||.++.|+++++..+..
T Consensus 69 ~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 69 EFFKKQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHHHHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HHHHHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 4555667888 9999999999999887654
No 211
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.08 E-value=9.8e-06 Score=64.67 Aligned_cols=54 Identities=7% Similarity=-0.122 Sum_probs=37.9
Q ss_pred CeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHH
Q psy38 91 PVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTA 144 (193)
Q Consensus 91 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~ 144 (193)
.|+++++||.|..-.............++++..+.+++.+||+...++.+++..
T Consensus 202 KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~ 255 (368)
T 2dby_A 202 KPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGE 255 (368)
T ss_dssp SCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHH
T ss_pred CCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchH
Confidence 699999999984210000124456677888888899999999987777665544
No 212
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.06 E-value=2.1e-06 Score=66.83 Aligned_cols=91 Identities=12% Similarity=0.092 Sum_probs=60.2
Q ss_pred ccchhhhccCccEEEEEEeCCChh-HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc--CHHHHHHHHHhC
Q psy38 47 RSITKSYYRNSVGALLVYDITSRA-SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV--SEAEAKAFASQN 123 (193)
Q Consensus 47 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v--~~~~~~~~~~~~ 123 (193)
..+.+..+.++|.+++|+|+.++. +...+.+++..... .+.|.+||.||+||..+ ... ..+...++....
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~----~~~~~vivlnK~DL~~~---~~~~~~~~~~~~~y~~~ 149 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIED---QDTEDTIQAYAEDYRNI 149 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCC---HHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECCccCch---hhhHHHHHHHHHHHHhC
Confidence 345566789999999999998764 44444555443332 23566799999999651 110 023333444556
Q ss_pred CCcEEEecCCCCcCHHHHHHH
Q psy38 124 DILHFETSSRSGFQVENAFTA 144 (193)
Q Consensus 124 ~~~~~~~Sa~~~~~i~e~f~~ 144 (193)
|.+++.+||.++.|+++++..
T Consensus 150 g~~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 150 GYDVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp TCCEEECCHHHHTTCTTTGGG
T ss_pred CCeEEEEecCCCCCHHHHHhh
Confidence 889999999998888766543
No 213
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.05 E-value=1.6e-06 Score=75.05 Aligned_cols=108 Identities=18% Similarity=0.128 Sum_probs=67.0
Q ss_pred EEEEeeCCCccc-------------cccchhhhc-cCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeC
Q psy38 34 KLQLWDTAGQER-------------FRSITKSYY-RNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCK 99 (193)
Q Consensus 34 ~l~l~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 99 (193)
.+.|+||||... ...+...|+ ..+|++++|.|++....-.+...++..+. ....|+++|.||
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~----~~g~pvIlVlNK 226 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVITK 226 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC----TTCSSEEEEEEC
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH----hcCCCEEEEEeC
Confidence 578999999543 222334444 57899999999986433333223333333 345789999999
Q ss_pred CCCCCCCCCCccCHHHHHH-H-HHhCC-CcEEEecCCCCcCHHHHHHHHHHH
Q psy38 100 LDLLQSGVPREVSEAEAKA-F-ASQND-ILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 100 ~Dl~~~~~~~~v~~~~~~~-~-~~~~~-~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
+|+... .......... + ....+ .+++.+||++|.|++++++++...
T Consensus 227 iDlv~~---~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 227 LDLMDE---GTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp TTSSCT---TCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred cccCCc---chhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 998652 2222111110 0 00123 256779999999999999998874
No 214
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.03 E-value=1.4e-05 Score=63.01 Aligned_cols=103 Identities=11% Similarity=-0.026 Sum_probs=61.9
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS 112 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~ 112 (193)
..+.|+||+|...- .......+|.+++++|.+..+..+.+..+ +.. .+.+++.||+|+.. .....
T Consensus 148 ~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~~------~~~ivvlNK~Dl~~---~~~~s 212 (337)
T 2qm8_A 148 FDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKG---IFE------LADMIAVNKADDGD---GERRA 212 (337)
T ss_dssp CCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTT---HHH------HCSEEEEECCSTTC---CHHHH
T ss_pred CCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcccHHHHHHH---Hhc------cccEEEEEchhccC---chhHH
Confidence 56889999997532 12345789999999998654322211111 111 23457779999743 11112
Q ss_pred HHHHHHHHHh----------CCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 113 EAEAKAFASQ----------NDILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 113 ~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
......+... +..+++.+||+++.|++++++.|.+..-
T Consensus 213 ~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 213 SAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2222223221 1357889999999999999999988653
No 215
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.84 E-value=0.00015 Score=57.51 Aligned_cols=86 Identities=16% Similarity=0.068 Sum_probs=55.8
Q ss_pred hccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc-CHHHHHHHHHhCCCcEEEec
Q psy38 53 YYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV-SEAEAKAFASQNDILHFETS 131 (193)
Q Consensus 53 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v-~~~~~~~~~~~~~~~~~~~S 131 (193)
...++|.+++|.+..-..+...+.+++...... +.|.+||.||+||..+ ... ..+.........|++++.+|
T Consensus 127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~----~~~~iivlNK~DL~~~---~~~~~~~~~~~~y~~~G~~v~~~S 199 (358)
T 2rcn_A 127 IAANIDQIVIVSAILPELSLNIIDRYLVGCETL----QVEPLIVLNKIDLLDD---EGMDFVNEQMDIYRNIGYRVLMVS 199 (358)
T ss_dssp EEECCCEEEEEEESTTTCCHHHHHHHHHHHHHH----TCEEEEEEECGGGCCH---HHHHHHHHHHHHHHTTTCCEEECB
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhc----CCCEEEEEECccCCCc---hhHHHHHHHHHHHHhCCCcEEEEe
Confidence 367899999997764223444455565544433 2456799999999651 110 01122334456788999999
Q ss_pred CCCCcCHHHHHHHH
Q psy38 132 SRSGFQVENAFTAV 145 (193)
Q Consensus 132 a~~~~~i~e~f~~i 145 (193)
|.++.|++++...+
T Consensus 200 a~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 200 SHTQDGLKPLEEAL 213 (358)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred cCCCcCHHHHHHhc
Confidence 99999999887643
No 216
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.0041 Score=49.64 Aligned_cols=103 Identities=15% Similarity=0.061 Sum_probs=58.5
Q ss_pred eeEEEEEEEecCCcEEEEEEeeCCCcccccc----chh---hhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcC-CC
Q psy38 18 VDFFARLVTMRDGARIKLQLWDTAGQERFRS----ITK---SYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIE-PH 89 (193)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~----~~~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~ 89 (193)
.+...-.+.+ ++ ..++|.||+|..+-.. +.. ..++.+|++++|.|++++.. +......++..... ..
T Consensus 107 ~~~~~g~~~~-~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~ 181 (376)
T 4a9a_A 107 LVTVPGVIRY-KG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLN 181 (376)
T ss_dssp CCEEEEEEEE-TT--EEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEET
T ss_pred eeeeeEEEEe-CC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHH--HHHHHHHHHHHhhHhhc
Confidence 3455556677 66 6688999999643221 112 34568999999999998632 22222223332211 12
Q ss_pred CCeEEEEeeCCCCCCC-----CCCCccCHHHHHHHHHhCCC
Q psy38 90 RPVFALVGCKLDLLQS-----GVPREVSEAEAKAFASQNDI 125 (193)
Q Consensus 90 ~~piilv~nK~Dl~~~-----~~~~~v~~~~~~~~~~~~~~ 125 (193)
..|.+++.||.|.... ........++...+...+.+
T Consensus 182 ~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~l 222 (376)
T 4a9a_A 182 KTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRI 222 (376)
T ss_dssp CCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTC
T ss_pred cCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcc
Confidence 3455589999997431 11233455666666555443
No 217
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.89 E-value=0.00032 Score=56.35 Aligned_cols=39 Identities=15% Similarity=-0.001 Sum_probs=24.0
Q ss_pred EEEEEeeCCCcccccc-------chhhhccCccEEEEEEeCCChhH
Q psy38 33 IKLQLWDTAGQERFRS-------ITKSYYRNSVGALLVYDITSRAS 71 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~-------~~~~~~~~~d~~i~v~d~~~~~s 71 (193)
..+.+|||+|...+.. ....+++++|++++|+|+++.++
T Consensus 86 ~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp CEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred cccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 3599999999876543 34567889999999999986544
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.02 E-value=0.006 Score=50.59 Aligned_cols=102 Identities=14% Similarity=0.061 Sum_probs=59.7
Q ss_pred EEEEEEeeCCCcccccc-chhh---h--ccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeE-EEEeeCCCCCC
Q psy38 32 RIKLQLWDTAGQERFRS-ITKS---Y--YRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVF-ALVGCKLDLLQ 104 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~ 104 (193)
.+.+.|+||+|...... +... . +-.+|.+++|+|++.... .......+... .|+ .+|.||.|...
T Consensus 183 ~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~---~~~~a~~~~~~-----~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA---CEAQAKAFKDK-----VDVASVIVTKLDGHA 254 (504)
T ss_dssp TCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT---HHHHHHHHHHH-----HCCCCEEEECTTSCC
T ss_pred CCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc---HHHHHHHHHhh-----cCceEEEEeCCcccc
Confidence 35688999999764221 1111 1 227899999999976432 22222233322 343 68999999854
Q ss_pred CCCCCccCHHHHHHHHHhCCCcE------------------EEecCCCCcC-HHHHHHHHHHH
Q psy38 105 SGVPREVSEAEAKAFASQNDILH------------------FETSSRSGFQ-VENAFTAVTQE 148 (193)
Q Consensus 105 ~~~~~~v~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~e~f~~i~~~ 148 (193)
. ... +.......+.++ +.+|+..|.| +.++++++.+.
T Consensus 255 ~---~g~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 255 K---GGG----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp C---CTH----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred c---hHH----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 1 111 222222333332 3468899998 99999888765
No 219
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.02 E-value=0.2 Score=40.14 Aligned_cols=43 Identities=7% Similarity=-0.141 Sum_probs=28.4
Q ss_pred CeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC--CcEEEecCCC
Q psy38 91 PVFALVGCKLDLLQSGVPREVSEAEAKAFASQND--ILHFETSSRS 134 (193)
Q Consensus 91 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~ 134 (193)
.|++.+.|+.|..-.. ...-..+...+++...+ ..++.+||..
T Consensus 225 kp~~y~~Nv~e~~~~~-~~~~~~~~~~~~~~~~~p~~~~v~~sa~~ 269 (392)
T 1ni3_A 225 KPVIYLVNMSERDFLR-QKNKYLPKIKKWIDENSPGDTLIPMSVAF 269 (392)
T ss_dssp SCEEEEEECCHHHHTT-TCCSSHHHHHHHHHTTSTTCCEEEECHHH
T ss_pred CceEEEEEecchhhcc-cchHHHHHHHHHHHhcCCCCeEEEEEhHH
Confidence 7888999998832100 01123556677877766 7899999875
No 220
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.82 E-value=0.23 Score=40.38 Aligned_cols=91 Identities=18% Similarity=0.140 Sum_probs=54.1
Q ss_pred EEEEEeeCCCcccccc-----chh-hhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC
Q psy38 33 IKLQLWDTAGQERFRS-----ITK-SYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG 106 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~-----~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 106 (193)
+.+.|+||+|...... +.. .....+|.+++|.|++... +.......+.... .+..+|.||.|...
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq---~a~~~a~~f~~~~----~i~gVIlTKlD~~~-- 253 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ---QAYNQALAFKEAT----PIGSIIVTKLDGSA-- 253 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHHSC----TTEEEEEECCSSCS--
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch---hHHHHHHHHHhhC----CCeEEEEECCCCcc--
Confidence 5678999999643221 110 1223578999999987542 2222333343322 23448999999743
Q ss_pred CCCccCHHHHHHHHHhCCCcEEEecCCCCcCHH
Q psy38 107 VPREVSEAEAKAFASQNDILHFETSSRSGFQVE 139 (193)
Q Consensus 107 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 139 (193)
....+.......+.|+..++. |++++
T Consensus 254 -----~gG~~ls~~~~~g~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 254 -----KGGGALSAVAATGAPIKFIGT--GEKID 279 (443)
T ss_dssp -----SHHHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred -----cccHHHHHHHHHCCCEEEEEc--CCChH
Confidence 333455666678888887776 44443
No 221
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.13 E-value=0.37 Score=36.94 Aligned_cols=92 Identities=12% Similarity=0.059 Sum_probs=55.4
Q ss_pred EEEEEeeCCCccc--ccc-chh-----hhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 33 IKLQLWDTAGQER--FRS-ITK-----SYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 33 ~~l~l~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
+.+.++||+|... ... +.. .....+|.+++|.|.+.. .+.......+... .....+|.||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~~----~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQA----SKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHHT----CTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHhh----CCCCEEEEeCCCCCc
Confidence 5688999999766 321 111 124468999999998642 2332223333321 122558999999643
Q ss_pred CCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHH
Q psy38 105 SGVPREVSEAEAKAFASQNDILHFETSSRSGFQVEN 140 (193)
Q Consensus 105 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e 140 (193)
....+..++...+.++..++ .|+++++
T Consensus 254 -------~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 -------KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp -------THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred -------chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 23345567777888888776 4555554
No 222
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.07 E-value=0.23 Score=35.22 Aligned_cols=66 Identities=9% Similarity=-0.079 Sum_probs=45.6
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcC-CCCCeEEEEeeCCCC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIE-PHRPVFALVGCKLDL 102 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl 102 (193)
+.+.++|+++... ......+..+|.+|++...+.. + ..+..+++.+..... ....++.+|.|+.|-
T Consensus 76 yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~ 142 (206)
T 4dzz_A 76 YDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIE 142 (206)
T ss_dssp SSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCT
T ss_pred CCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 5678999997652 3445566779999999987643 4 666666666665432 224566899999985
No 223
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=91.29 E-value=1.5 Score=31.49 Aligned_cols=65 Identities=6% Similarity=-0.031 Sum_probs=45.4
Q ss_pred EEEEEeeCCCc-cccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38 33 IKLQLWDTAGQ-ERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL 103 (193)
Q Consensus 33 ~~l~l~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 103 (193)
+.+.+.|+++. .. ......+..+|.+|++...+ ..++..+...++.+.... ..++.+|.|+.|-.
T Consensus 68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPY 133 (209)
T ss_dssp CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCT
T ss_pred CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCc
Confidence 55789999876 43 23455677899999998764 566777777777666532 34577999999853
No 224
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.84 E-value=4.4 Score=30.63 Aligned_cols=85 Identities=11% Similarity=0.083 Sum_probs=54.0
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEE-EEeeCCCCCCCCCCCc
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFA-LVGCKLDLLQSGVPRE 110 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~~~~ 110 (193)
.+.+.|+|+++..... .....+..+|.+|++... +..++..+..+++.+.........+++ +|.|+.+- +
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~------~- 226 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA------T- 226 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC------C-
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc------H-
Confidence 3667899998754322 123456789999999875 466777777777777764333445654 89999883 1
Q ss_pred cCHHHHHHHHHhCCCcEE
Q psy38 111 VSEAEAKAFASQNDILHF 128 (193)
Q Consensus 111 v~~~~~~~~~~~~~~~~~ 128 (193)
....++.+..+.+++
T Consensus 227 ---~~~~~~~~~~g~~v~ 241 (307)
T 3end_A 227 ---DEVDRFCKETNFRRL 241 (307)
T ss_dssp ---HHHHHHHHHHTCCEE
T ss_pred ---HHHHHHHHHcCCCce
Confidence 234445555565544
No 225
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=88.66 E-value=1.2 Score=36.19 Aligned_cols=90 Identities=14% Similarity=0.087 Sum_probs=53.7
Q ss_pred EEEEEeeCCCccc--ccc-ch---hh--hccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 33 IKLQLWDTAGQER--FRS-IT---KS--YYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 33 ~~l~l~D~~g~~~--~~~-~~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
+.+.+.||+|... ... +. .. ..-..+.+++|.|+.... ++......+.... .+..+|.||.|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq---~a~~~a~~f~~~~----~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ---KAYDLASRFHQAS----PIGSVIITKMDGTA 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GGHHHHHHHHHHC----SSEEEEEECGGGCS
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch---HHHHHHHHHhccc----CCcEEEEecccccc
Confidence 5577999999643 111 11 11 112468999999987643 2223334444332 34558999999643
Q ss_pred CCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCH
Q psy38 105 SGVPREVSEAEAKAFASQNDILHFETSSRSGFQV 138 (193)
Q Consensus 105 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i 138 (193)
....+.......+.|+..++. |+++
T Consensus 253 -------~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 -------KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp -------CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred -------cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 334456666677898887776 5444
No 226
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=85.19 E-value=5.6 Score=31.10 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=19.5
Q ss_pred HHhCCCcEEEecCCC---------CcCHHHHHHHHHHHHHHHhcCCCcccc
Q psy38 120 ASQNDILHFETSSRS---------GFQVENAFTAVTQEIYNRVQSGDYKVE 161 (193)
Q Consensus 120 ~~~~~~~~~~~Sa~~---------~~~i~e~f~~i~~~i~~~~~~~~~~~~ 161 (193)
++..+.|+|+.++.+ ..+..+.|..++..++++...++...-
T Consensus 307 aq~~~~Pi~~l~~~~~~~g~~~~~~~~~~~~~~~la~~i~~~~~~~~~~~~ 357 (361)
T 3pg5_A 307 AQDVHAPIMELSSSDRVRGAQINQRNAYAEKINSVAANVYKALFPNELEHH 357 (361)
T ss_dssp --------------------------CCHHHHHHHHHHHHHHHCCCC----
T ss_pred HHHHCCCeEECchhcCCccHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhc
Confidence 344566788887755 458889999999999999988876543
No 227
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=84.95 E-value=8.5 Score=31.06 Aligned_cols=84 Identities=17% Similarity=0.065 Sum_probs=47.0
Q ss_pred EEEEEeeCCCcccccc-chh-----hhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCC-CeEEEEeeCCCCCCC
Q psy38 33 IKLQLWDTAGQERFRS-ITK-----SYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHR-PVFALVGCKLDLLQS 105 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-~piilv~nK~Dl~~~ 105 (193)
+.+.|+||+|...... +.. ..+..+|.+++|.|++... +.......+. ... ....+|.||.|...
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~----~~~~~i~gvVlnK~D~~~- 252 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFK----EAVGEIGSIIVTKLDGSA- 252 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHH----TTSCSCEEEEEECSSSCS-
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHh----hcccCCeEEEEeCCCCcc-
Confidence 5678999999754211 111 1123689999999986543 2222222222 112 23668999999743
Q ss_pred CCCCccCHHHHHHHHHhCCCcEEEe
Q psy38 106 GVPREVSEAEAKAFASQNDILHFET 130 (193)
Q Consensus 106 ~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (193)
....+..+....+.++..+
T Consensus 253 ------~~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 253 ------KGGGALSAVAETKAPIKFI 271 (432)
T ss_dssp ------TTHHHHHHHHHSSCCEEEE
T ss_pred ------chHHHHHHHHHHCCCEEEe
Confidence 1122344566667665554
No 228
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=82.97 E-value=11 Score=27.10 Aligned_cols=87 Identities=6% Similarity=-0.090 Sum_probs=56.6
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV 111 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v 111 (193)
.+.+.++|+++... ......+..+|.+|++...+ ..++..+..+++.+.... .....+-+|.|+.+-.. ..
T Consensus 118 ~yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~-~~~~~~~~v~N~~~~~~-----~~ 188 (245)
T 3ea0_A 118 FYDYIIVDFGASID--HVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFE-KPISRIEIILNRADTNS-----RI 188 (245)
T ss_dssp HCSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCS-SCCSCEEEEEESTTSCT-----TS
T ss_pred hCCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhC-CCccceEEEEecCCCCC-----CC
Confidence 35678999987542 24455677899999998764 667888878777776543 22345668999998643 13
Q ss_pred CHHHHHHHHHhCCCcEEEe
Q psy38 112 SEAEAKAFASQNDILHFET 130 (193)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~ 130 (193)
..+ .+.+..+.+++.+
T Consensus 189 ~~~---~~~~~~~~~v~~~ 204 (245)
T 3ea0_A 189 TSD---EIEKVIGRPISKR 204 (245)
T ss_dssp CHH---HHHHHHTSCEEEE
T ss_pred CHH---HHHHHhCCCeEEE
Confidence 333 3344456666644
No 229
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=80.02 E-value=13 Score=27.17 Aligned_cols=83 Identities=13% Similarity=0.006 Sum_probs=52.3
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS 112 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~ 112 (193)
+.+.|+|+++... ......+..+|.+|++...+ ..+...+..++..+.... ...+-+|.|+.+-.. . .
T Consensus 111 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~----~-~- 178 (263)
T 1hyq_A 111 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERLG---TKVLGVVVNRITTLG----I-E- 178 (263)
T ss_dssp CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHHT---CEEEEEEEEEECTTT----H-H-
T ss_pred CCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhcC---CCeeEEEEccCCccc----c-c-
Confidence 5678999987543 23345567789999998754 556777777776666541 245558999988533 1 1
Q ss_pred HHHHHHHHHhCCCcEE
Q psy38 113 EAEAKAFASQNDILHF 128 (193)
Q Consensus 113 ~~~~~~~~~~~~~~~~ 128 (193)
....++.+..+.+++
T Consensus 179 -~~~~~~~~~~~~~~~ 193 (263)
T 1hyq_A 179 -MAKNEIEAILEAKVI 193 (263)
T ss_dssp -HHHHHHHHHTTSCEE
T ss_pred -chHHHHHHHhCCCeE
Confidence 334445555665543
No 230
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=77.32 E-value=14 Score=26.99 Aligned_cols=67 Identities=12% Similarity=0.062 Sum_probs=41.7
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHH---HhcCCCCCeEE-EEeeCCCC
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAK---RHIEPHRPVFA-LVGCKLDL 102 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~---~~~~~~~~pii-lv~nK~Dl 102 (193)
.+.+.|+|+++.... .....+..+|.+|++...+. .++..+..+++.+. ... ....+++ +|.|+.|-
T Consensus 111 ~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~-~~~~~~~gvv~N~~~~ 181 (257)
T 1wcv_1 111 GYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGL-NPRLRLLGILVTMYDG 181 (257)
T ss_dssp TCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHT-CTTCEEEEEEEESBCT
T ss_pred CCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHh-CCCceEEEEEEEeECC
Confidence 356889999876432 23344567899999998754 45555544444443 322 2245654 89999875
No 231
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=76.82 E-value=9.5 Score=27.39 Aligned_cols=64 Identities=11% Similarity=-0.098 Sum_probs=44.1
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCC
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLD 101 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 101 (193)
.+.+.++|+++.-.. .....+..+|.+|++...+ ..++..+..+.+.+.... . ..+.+|.|+.+
T Consensus 131 ~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~~-~--~~~~~v~N~~~ 194 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGDLG-I--KKVRYVINKVR 194 (254)
T ss_dssp CCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHHHT-C--SCEEEEEEEEC
T ss_pred CCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHHcC-C--ccEEEEEeCCC
Confidence 466789999875432 4455668899999999864 566777766665444432 2 45668999987
No 232
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=75.95 E-value=0.28 Score=38.81 Aligned_cols=91 Identities=18% Similarity=0.109 Sum_probs=47.0
Q ss_pred EEEeeCCCccccccc--------hhhhc--cCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 35 LQLWDTAGQERFRSI--------TKSYY--RNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 35 l~l~D~~g~~~~~~~--------~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
+.++||+|......+ ...++ +..+.++++.+....--+..+.. .........|++++.||.|...
T Consensus 214 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 214 ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVH 288 (369)
T ss_dssp CEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEE
T ss_pred eEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCcccc
Confidence 789999996432211 11222 56889999998743211111100 1111233578999999999754
Q ss_pred CCCCCccCHHHHHHHHHhCCCcEEEecCCC
Q psy38 105 SGVPREVSEAEAKAFASQNDILHFETSSRS 134 (193)
Q Consensus 105 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 134 (193)
. ... ......+.+..+..+...++..
T Consensus 289 ~---~~~-~~~~~~~~~~~g~~l~p~~~~~ 314 (369)
T 3ec1_A 289 R---TKL-EKADSLYANQLGELLSPPSKRY 314 (369)
T ss_dssp E---EEG-GGHHHHHHHHBTTTBCSSCGGG
T ss_pred c---ccH-HHHHHHHHHhcCCccCCCCchh
Confidence 1 111 2222234455565544444443
No 233
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=74.96 E-value=6.3 Score=29.06 Aligned_cols=93 Identities=13% Similarity=0.064 Sum_probs=50.7
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEE-EEeeCCCCCCCC--CC
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFA-LVGCKLDLLQSG--VP 108 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~--~~ 108 (193)
.+.+.|+|+++......+....+..+|.+|++...+ ..+...+...++.+... ..+++ +|.|+.|..... ..
T Consensus 128 ~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~ 202 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQ-ELTAVIVEKAINMAEET----NTSVLGLVENMSYFVCPNCGHK 202 (262)
T ss_dssp SCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSS-SCCHHHHHHHHHHHHTT----TCCEEEEEETTCCEECTTTCCE
T ss_pred CCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCc-cchHHHHHHHHHHHHhC----CCCEEEEEECCCccCCcccccc
Confidence 466789999876432111122223589999988765 34555666666655542 34555 899998742100 00
Q ss_pred Ccc-CHHHHHHHHHhCCCcEEE
Q psy38 109 REV-SEAEAKAFASQNDILHFE 129 (193)
Q Consensus 109 ~~v-~~~~~~~~~~~~~~~~~~ 129 (193)
..+ ......++.+..+.+++.
T Consensus 203 ~~~~~~~~~~~~~~~~g~~~~~ 224 (262)
T 2ph1_A 203 SYIFGEGKGESLAKKYNIGFFT 224 (262)
T ss_dssp ECTTCCCCHHHHHHHTTCSEEE
T ss_pred cccccccHHHHHHHHcCCCeEE
Confidence 001 112234566667777664
No 234
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=74.96 E-value=10 Score=27.10 Aligned_cols=67 Identities=13% Similarity=0.031 Sum_probs=45.8
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
.+.+.++|+++... ......+..+|.+|++...+ ..++..+...++.+... ....+-+|.|+.+-..
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSD 177 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCT
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhC---CCceEEEEEecCCccc
Confidence 35678899987543 23455677899999998764 56677777777766654 2245568999998643
No 235
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=73.63 E-value=24 Score=25.77 Aligned_cols=88 Identities=7% Similarity=-0.028 Sum_probs=52.0
Q ss_pred EEEEEeeCCCccccccch-hhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeE-EEEeeCCCCCCCCCCCc
Q psy38 33 IKLQLWDTAGQERFRSIT-KSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVF-ALVGCKLDLLQSGVPRE 110 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~~~~~~~ 110 (193)
+.+.++|++|......+. ......+|.+|++... +..++..+..++..+.......+.++ -+|.|+.+-.
T Consensus 116 yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~------- 187 (269)
T 1cp2_A 116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA------- 187 (269)
T ss_dssp CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS-------
T ss_pred CCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecC-chhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc-------
Confidence 668899998754322121 1222468999998875 45677777766766665543223443 5789997631
Q ss_pred cCHHHHHHHHHhCCCcEE
Q psy38 111 VSEAEAKAFASQNDILHF 128 (193)
Q Consensus 111 v~~~~~~~~~~~~~~~~~ 128 (193)
...+....+.+..+.+++
T Consensus 188 ~~~~~~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 188 NEYELLDAFAKELGSQLI 205 (269)
T ss_dssp CCHHHHHHHHHHHTCCEE
T ss_pred hhHHHHHHHHHHcCCccc
Confidence 234444455555565544
No 236
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=73.54 E-value=29 Score=27.80 Aligned_cols=107 Identities=12% Similarity=0.177 Sum_probs=55.7
Q ss_pred EEEEeeCCCccccccchhh-----hccCccEEEEEEeCC--ChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCC---
Q psy38 34 KLQLWDTAGQERFRSITKS-----YYRNSVGALLVYDIT--SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL--- 103 (193)
Q Consensus 34 ~l~l~D~~g~~~~~~~~~~-----~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~--- 103 (193)
.+.+||++|-......... .+...+.+++ +|.. ...... + ...+.. ...|+++|.||.|+.
T Consensus 121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~-l---a~aL~~----~~~p~~lV~tkpdlllLD 191 (413)
T 1tq4_A 121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFKKNDID-I---AKAISM----MKKEFYFVRTKVDSDITN 191 (413)
T ss_dssp TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHH-H---HHHHHH----TTCEEEEEECCHHHHHHH
T ss_pred CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHH-H---HHHHHh----cCCCeEEEEecCcccccC
Confidence 4788999875321111112 2334455554 7765 222111 1 122222 136899999999963
Q ss_pred CCC-CCCccCHHH----HHHHH----HhCC---CcEEEecC--CCCcCHHHHHHHHHHHH
Q psy38 104 QSG-VPREVSEAE----AKAFA----SQND---ILHFETSS--RSGFQVENAFTAVTQEI 149 (193)
Q Consensus 104 ~~~-~~~~v~~~~----~~~~~----~~~~---~~~~~~Sa--~~~~~i~e~f~~i~~~i 149 (193)
+.. ..+.....+ ..++. .+.+ ..++.+|+ ..+.|++++.+.+.+.+
T Consensus 192 EPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 192 EADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp HHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 100 011222222 23333 1222 36788899 66677999888887654
No 237
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=73.49 E-value=12 Score=27.42 Aligned_cols=64 Identities=9% Similarity=-0.009 Sum_probs=43.9
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLD 101 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 101 (193)
+.+.|+|+++... ......+..+|.+|++...+ ..++..+...+..+.... ...++.+|.|+.+
T Consensus 145 yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 145 YDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKLN--LFLPIFLIITRFK 208 (267)
T ss_dssp CSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTTT--CCCCEEEEEEEEC
T ss_pred CCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHHh--ccCCEEEEEeccc
Confidence 5678999987543 23455566799999999874 456666666666665542 2356678999984
No 238
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=72.48 E-value=0.37 Score=38.14 Aligned_cols=65 Identities=12% Similarity=0.072 Sum_probs=36.2
Q ss_pred EEEeeCCCccccccc----h----hhh--ccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 35 LQLWDTAGQERFRSI----T----KSY--YRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 35 l~l~D~~g~~~~~~~----~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
+.++||+|......+ . ..+ .+..+.++++++.....-+..+.. .........|++++.||.|...
T Consensus 213 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 213 SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIH 287 (368)
T ss_dssp CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEE
T ss_pred eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCccccc
Confidence 789999996432211 1 111 356788888887732211111100 1111233578999999999754
No 239
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=66.96 E-value=9.2 Score=27.79 Aligned_cols=68 Identities=6% Similarity=-0.096 Sum_probs=45.8
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcC-----CCCCeEEEEeeCCCC
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIE-----PHRPVFALVGCKLDL 102 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~~~piilv~nK~Dl 102 (193)
.+.+.++|+++... ......+..+|.+|++...+ ..++..+..++..+..... .....+-+|.|+.+-
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSS-HHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCC-hhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 46788999987543 24456677899999999864 5667777666666554321 122466789999874
No 240
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=66.54 E-value=8.8 Score=30.97 Aligned_cols=16 Identities=13% Similarity=0.085 Sum_probs=13.4
Q ss_pred CCCeEEEEeeCCCCCC
Q psy38 89 HRPVFALVGCKLDLLQ 104 (193)
Q Consensus 89 ~~~piilv~nK~Dl~~ 104 (193)
...|+|+|.||+|...
T Consensus 175 ~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 175 SKVNIIPIIAKADAIS 190 (427)
T ss_dssp SCSEEEEEESCGGGSC
T ss_pred hCCCEEEEEcchhccc
Confidence 4689999999999754
No 241
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=65.22 E-value=39 Score=24.98 Aligned_cols=89 Identities=7% Similarity=-0.062 Sum_probs=50.0
Q ss_pred EEEEEEeeCCCccccccc-hhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe-EEEEeeCCCCCCCCCCC
Q psy38 32 RIKLQLWDTAGQERFRSI-TKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV-FALVGCKLDLLQSGVPR 109 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~ 109 (193)
.+.+.|+|++|......+ .......+|.+|++... +..++..+..++..+.........+ +-+|.|+.+-.
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~------ 190 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD------ 190 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT------
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecC-CHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch------
Confidence 466889999875322211 12223568999988875 4566776666666555543222344 34788987521
Q ss_pred ccCHHHHHHHHHhCCCcEE
Q psy38 110 EVSEAEAKAFASQNDILHF 128 (193)
Q Consensus 110 ~v~~~~~~~~~~~~~~~~~ 128 (193)
...+....+.+..+.+++
T Consensus 191 -~~~~~~~~l~~~~g~~~l 208 (289)
T 2afh_E 191 -REDELIIALANKLGTQMI 208 (289)
T ss_dssp -THHHHHHHHHHHHTSCEE
T ss_pred -hHHHHHHHHHHHcCcccc
Confidence 123334445555565544
No 242
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=63.27 E-value=28 Score=25.85 Aligned_cols=33 Identities=18% Similarity=0.137 Sum_probs=25.2
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 67 (193)
+.+.|+|+++.. .......+..+|.+|++...+
T Consensus 104 yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 104 CDFILIDTPGGD--SAITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp CSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESS
T ss_pred CCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCC
Confidence 567899998864 334566778899999999875
No 243
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=54.10 E-value=70 Score=25.68 Aligned_cols=65 Identities=20% Similarity=0.094 Sum_probs=37.1
Q ss_pred EEEEEeeCCCcccccc-chh-----hhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 33 IKLQLWDTAGQERFRS-ITK-----SYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
+.+.|+||+|...... +.. ..+..++.+++|.|+.... +.......+.... ...- +|.||.|...
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---~~~~~~~~f~~~l---~i~g-vVlnK~D~~~ 254 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---DAANTAKAFNEAL---PLTG-VVLTKVDGDA 254 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---THHHHHHHHHHHS---CCCC-EEEECTTSSS
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---HHHHHHHHHhccC---CCeE-EEEecCCCCc
Confidence 5688999999754321 111 1234678899999987532 2322233333221 1223 6899999743
No 244
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=53.40 E-value=13 Score=28.67 Aligned_cols=50 Identities=8% Similarity=-0.067 Sum_probs=38.8
Q ss_pred CCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 89 HRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 89 ~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
...|+ +|.+|.|.. .++..+.+++.+++++.++..+...+..+-.++...
T Consensus 79 ~~~P~-IIltrg~~~---------peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~ 128 (314)
T 1ko7_A 79 PETPA-IIVTRDLEP---------PEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHE 128 (314)
T ss_dssp TTCCC-EEECTTCCC---------CHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHH
T ss_pred CCCCE-EEEeCCCCC---------CHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHh
Confidence 46888 788887752 345668888899999999999888888887776654
No 245
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=53.21 E-value=28 Score=26.85 Aligned_cols=90 Identities=16% Similarity=0.049 Sum_probs=50.9
Q ss_pred EEEeeCCCccccccc-hhh-----hccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCC
Q psy38 35 LQLWDTAGQERFRSI-TKS-----YYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP 108 (193)
Q Consensus 35 l~l~D~~g~~~~~~~-~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~ 108 (193)
+.+.|++|....... ... ..-..|-.+++.|.+.. .++......+.... ...+ ++.||.|...
T Consensus 214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---~~~~~~~~~~~~~~---~it~-iilTKlD~~a---- 282 (328)
T 3e70_C 214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---NAIVEQARQFNEAV---KIDG-IILTKLDADA---- 282 (328)
T ss_dssp EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHS---CCCE-EEEECGGGCS----
T ss_pred hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---HHHHHHHHHHHHhc---CCCE-EEEeCcCCcc----
Confidence 457999987543221 111 11136788889997654 23333344444332 2344 8899998532
Q ss_pred CccCHHHHHHHHHhCCCcEEEecCCCCcCHHH
Q psy38 109 REVSEAEAKAFASQNDILHFETSSRSGFQVEN 140 (193)
Q Consensus 109 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e 140 (193)
....+.......+.++..++ +|+++++
T Consensus 283 ---~~G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 283 ---RGGAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp ---CCHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred ---chhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 22335566777788888777 5555544
No 246
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=52.55 E-value=27 Score=25.91 Aligned_cols=65 Identities=6% Similarity=0.005 Sum_probs=40.3
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEE-EEeeCCCCC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFA-LVGCKLDLL 103 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~ 103 (193)
+.+.|+|+++...... .......+|.+|++..... .+...+...++.+... ..+++ +|.|+.|..
T Consensus 192 yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~~----~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSEN-NNKDEVKKGKELIEAT----GAKLLGVVLNRMPKD 257 (271)
T ss_dssp CSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTS-CCHHHHHHHHHHHHTT----TCEEEEEEEEEECC-
T ss_pred CCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCC-CcHHHHHHHHHHHHhC----CCCEEEEEEeCCcCC
Confidence 5678899987543211 2334456899999998753 3455555555555532 24554 789999853
No 247
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=51.75 E-value=72 Score=25.60 Aligned_cols=86 Identities=19% Similarity=0.059 Sum_probs=47.4
Q ss_pred EEEEEeeCCCcccccc-chh-----hhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC
Q psy38 33 IKLQLWDTAGQERFRS-ITK-----SYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG 106 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 106 (193)
+.+.|.||+|...... +.. ...-.++.+++|.|.... .++......+.... .. .-+|.||.|...
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~~l---~i-~GVIlTKlD~~~-- 251 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDEKV---GV-TGLVLTKLDGDA-- 251 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHT---CC-CEEEEESGGGCS--
T ss_pred CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHHHHHHHhcC---Cc-eEEEEeCcCCcc--
Confidence 4578999999754321 111 112257888999998642 23323333333322 12 337889998633
Q ss_pred CCCccCHHHHHHHHHhCCCcEEEecC
Q psy38 107 VPREVSEAEAKAFASQNDILHFETSS 132 (193)
Q Consensus 107 ~~~~v~~~~~~~~~~~~~~~~~~~Sa 132 (193)
....+.......+.++..+..
T Consensus 252 -----~~g~alsi~~~~g~PI~flg~ 272 (425)
T 2ffh_A 252 -----RGGAALSARHVTGKPIYFAGV 272 (425)
T ss_dssp -----SCHHHHHHHHHHCCCEEEEEC
T ss_pred -----cHHHHHHHHHHHCCCEEEEeC
Confidence 122344566667787666553
No 248
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=49.55 E-value=59 Score=25.49 Aligned_cols=68 Identities=10% Similarity=-0.063 Sum_probs=37.6
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChh------HHhhHHHHHHHHHHhcCCCCC-eEEEEeeCCC
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA------SFEHIPVWMMEAKRHIEPHRP-VFALVGCKLD 101 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~i~~~~~~~~~-piilv~nK~D 101 (193)
.+.+.|+|+++.-. ......+..+|.+|++...+... .+..+...++.+......... -++.+.|+.+
T Consensus 247 ~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~ 321 (403)
T 3ez9_A 247 DYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMT 321 (403)
T ss_dssp GCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC--
T ss_pred cCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccC
Confidence 35688999987653 23445566899999999765321 123334444444443222122 2456778876
No 249
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=49.29 E-value=34 Score=25.37 Aligned_cols=68 Identities=15% Similarity=0.146 Sum_probs=40.0
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH---HHHHHHhcCCCCCe-EEEEeeCCCCC
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW---MMEAKRHIEPHRPV-FALVGCKLDLL 103 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~---~~~i~~~~~~~~~p-iilv~nK~Dl~ 103 (193)
.+.+.|+|+++..... ....+..+|.+|++...+ ..++..+..+ +..+...... ..+ +-+|.|+.|..
T Consensus 154 ~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~-~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAE-EESTNNIQNYISYLIDLQEQFNP-GLDMIGFVPYLVDTD 225 (298)
T ss_dssp GCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGG-GCCHHHHHHHHHHHHHHHHHHCT-TCEEEEEEEEESCTT
T ss_pred CCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCc-HHHHHHHHHHHHHHHHHHHHhCC-CCeEEEEEEEEECCC
Confidence 3567899998764422 233444689999998764 3344444444 4443333222 355 44789999853
No 250
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=47.68 E-value=43 Score=26.39 Aligned_cols=49 Identities=16% Similarity=0.034 Sum_probs=32.6
Q ss_pred CCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38 90 RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE 148 (193)
Q Consensus 90 ~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~ 148 (193)
..|.+++.||.|.. ..++...+.+ .-.++.+|+..+.|++.+...+.+.
T Consensus 249 ~~p~i~v~nKid~~--------~~eele~l~~--~~~~~~is~~~e~gLd~Li~~~y~~ 297 (376)
T 4a9a_A 249 YMPAIYVLNKIDSL--------SIEELELLYR--IPNAVPISSGQDWNLDELLQVMWDR 297 (376)
T ss_dssp EECEEEEEECGGGS--------CHHHHHHHTT--STTEEECCTTTCTTHHHHHHHHHHH
T ss_pred ccceEEEEeccccc--------CHHHHHHHhc--ccchhhhhhhhcccchhHHHHHHHH
Confidence 35788999999863 3333333322 2357889999999998876665543
No 251
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=44.15 E-value=34 Score=28.82 Aligned_cols=67 Identities=19% Similarity=0.194 Sum_probs=33.9
Q ss_pred EEEEeeCCCcc-------------ccccchhhhccCccEEEEEEeCCChh-HHhhHHHHHHHHHHhcCCCCCeEEEEeeC
Q psy38 34 KLQLWDTAGQE-------------RFRSITKSYYRNSVGALLVYDITSRA-SFEHIPVWMMEAKRHIEPHRPVFALVGCK 99 (193)
Q Consensus 34 ~l~l~D~~g~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK 99 (193)
.+.+.|.||.. ....+...++.....+++++...+.+ .-..+..+...+ .+...+.|+|.||
T Consensus 148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v----~~~g~rtI~VlTK 223 (608)
T 3szr_A 148 DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEV----DPEGDRTIGILTK 223 (608)
T ss_dssp CEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHH----CSSCCSEEEEEEC
T ss_pred ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHH----hhcCCceEEEecc
Confidence 47789988532 12233455555544444444333322 111223333322 3344567799999
Q ss_pred CCCCC
Q psy38 100 LDLLQ 104 (193)
Q Consensus 100 ~Dl~~ 104 (193)
.|+..
T Consensus 224 ~Dlv~ 228 (608)
T 3szr_A 224 PDLVD 228 (608)
T ss_dssp GGGSS
T ss_pred hhhcC
Confidence 99864
No 252
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=41.47 E-value=62 Score=23.95 Aligned_cols=43 Identities=16% Similarity=0.085 Sum_probs=25.3
Q ss_pred CccEEEEEEeCCChhHHhhH-HHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 56 NSVGALLVYDITSRASFEHI-PVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 56 ~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
.+++.+++.|.... .+... ...+..+.. . .++++|.+|+|...
T Consensus 111 Ral~~lllldep~~-gL~~lD~~~l~~L~~----~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 111 RVHCCLYFISPTGH-SLRPLDLEFMKHLSK----V-VNIIPVIAKADTMT 154 (270)
T ss_dssp SCCEEEEEECCCSS-SCCHHHHHHHHHHHT----T-SEEEEEETTGGGSC
T ss_pred eeeeeeEEEecCCC-cCCHHHHHHHHHHHh----c-CcEEEEEeccccCC
Confidence 36888888886421 11111 223333332 2 78999999999754
No 253
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=39.70 E-value=22 Score=28.75 Aligned_cols=51 Identities=14% Similarity=0.269 Sum_probs=34.1
Q ss_pred EEEEeeCCCccc--cccch--------hhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHh
Q psy38 34 KLQLWDTAGQER--FRSIT--------KSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRH 85 (193)
Q Consensus 34 ~l~l~D~~g~~~--~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 85 (193)
...+||..|.+. .+..+ ..++..+.+.++++|.++. ++.....|+..+...
T Consensus 88 ~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 88 SFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp CGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 346799888732 23333 5566677888999999987 455556677666654
No 254
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=37.66 E-value=26 Score=24.65 Aligned_cols=71 Identities=11% Similarity=0.053 Sum_probs=40.6
Q ss_pred hhhccCccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC
Q psy38 51 KSYYRNSVGALLVYDITS---RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI 125 (193)
Q Consensus 51 ~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~ 125 (193)
...+..+|++|++-..-+ +..+.++..|+..........+.|+.++++=.-... -.......+......+.
T Consensus 62 ~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~G----g~~a~~~Lr~vl~~lg~ 135 (190)
T 3u7r_A 62 KDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIG----AALAQARLKNDLLHVGT 135 (190)
T ss_dssp HHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTT----THHHHHHHHHHHHTTTC
T ss_pred HHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhh----HHHHHHHHHHHHHHcCC
Confidence 456778999999886655 456777777765322222345678877775432211 11223444555555554
No 255
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=36.53 E-value=1.2e+02 Score=22.64 Aligned_cols=67 Identities=13% Similarity=0.041 Sum_probs=41.9
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ 104 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 104 (193)
+.+.|+|+++...... .......+|++|+|..... .+...+...++.+.... ...+-+|.|+.|...
T Consensus 202 yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~-~~~~~~~~~~~~l~~~g---~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 202 YDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAV-NTLKEVETSLSRFEQNG---IPVKGVILNSIFRRA 268 (286)
T ss_dssp CSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTT-SBHHHHHHHHHHHHHTT---CCCCEEEEEEECCCC
T ss_pred CCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCC-CcHHHHHHHHHHHHhCC---CCEEEEEEcCccccc
Confidence 4578999987543211 2344567899999998753 34555555555555532 233447899998643
No 256
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=33.57 E-value=86 Score=25.91 Aligned_cols=69 Identities=9% Similarity=-0.009 Sum_probs=45.2
Q ss_pred HhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEec--CCCCcCHHHHHHHHHHHH
Q psy38 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS--SRSGFQVENAFTAVTQEI 149 (193)
Q Consensus 72 ~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~S--a~~~~~i~e~f~~i~~~i 149 (193)
+.++.+.++.+..+ ..|+++..|+..-.. +-..+..+++|.+.|+.+..+. ++-|.|-.++=+.+++.+
T Consensus 346 ~~NL~kHIen~~~f----GvpvVVaiN~F~tDT-----~aEi~~v~~~~~~~G~~~~~s~~wa~GG~G~~~LA~~Vv~~~ 416 (543)
T 3do6_A 346 FKNLRVHVENLRKF----NLPVVVALNRFSTDT-----EKEIAYVVKECEKLGVRVAVSEVFKKGSEGGVELAKAVAEAA 416 (543)
T ss_dssp HHHHHHHHHHHHHT----TCCEEEEEECCTTCC-----HHHHHHHHHHHHTTTCEEEEECHHHHGGGGSHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHc----CCCeEEEEeCCCCCC-----HHHHHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHh
Confidence 44566666766664 478889999976432 1234556788898998765443 556777777766666543
No 257
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=33.48 E-value=85 Score=23.54 Aligned_cols=66 Identities=12% Similarity=-0.024 Sum_probs=39.4
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL 103 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 103 (193)
+.+.|+|+++...... .......+|.+|+|..... .+...+...++.+.... . ..+-+|.|+.|..
T Consensus 214 yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~-~~~~~~~~~~~~l~~~~-~--~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGL-NTAKEVSLSMQRLEQAG-V--NIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTT-SCTTHHHHHHHHHHHTT-C--CCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCC-ChHHHHHHHHHHHHhCC-C--CeEEEEEeCCccC
Confidence 4578999987643211 2234456899999987643 34555555555555432 1 1222678998864
No 258
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=33.21 E-value=84 Score=22.45 Aligned_cols=41 Identities=15% Similarity=-0.011 Sum_probs=31.7
Q ss_pred CccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEe
Q psy38 56 NSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVG 97 (193)
Q Consensus 56 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 97 (193)
++|++.+.++.....+...+..+++.+.+....++.|+ +||
T Consensus 143 ~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v-~vG 183 (215)
T 3ezx_A 143 KGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKC-MFG 183 (215)
T ss_dssp TTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEE-EEE
T ss_pred CCCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEE-EEE
Confidence 67888887888888888888999999988643346787 555
No 259
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=32.67 E-value=1.5e+02 Score=22.07 Aligned_cols=87 Identities=20% Similarity=0.075 Sum_probs=46.7
Q ss_pred EEEEEeeCCCcccccc-chhh-----hccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC
Q psy38 33 IKLQLWDTAGQERFRS-ITKS-----YYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG 106 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~-~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 106 (193)
+.+.++|++|...... .... ..-.++.++++.|.... .+.......+.... ...-+|.||.|...
T Consensus 181 ~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~---~~~~~~~~~~~~~~----~i~givlnk~d~~~-- 251 (295)
T 1ls1_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDEKV----GVTGLVLTKLDGDA-- 251 (295)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---HHHHHHHHHHHHHT----CCCEEEEECGGGCS--
T ss_pred CCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc---HHHHHHHHHHhhcC----CCCEEEEECCCCCc--
Confidence 5678999997643211 1111 11147888899987632 22212222233221 12337899999643
Q ss_pred CCCccCHHHHHHHHHhCCCcEEEecCC
Q psy38 107 VPREVSEAEAKAFASQNDILHFETSSR 133 (193)
Q Consensus 107 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 133 (193)
....+.......++++..++.-
T Consensus 252 -----~~g~~~~~~~~~~~pi~~i~~g 273 (295)
T 1ls1_A 252 -----RGGAALSARHVTGKPIYFAGVS 273 (295)
T ss_dssp -----SCHHHHHHHHHHCCCEEEEC--
T ss_pred -----cHHHHHHHHHHHCcCEEEEeCC
Confidence 2234556777778888776643
No 260
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=26.93 E-value=1.5e+02 Score=20.13 Aligned_cols=63 Identities=6% Similarity=-0.112 Sum_probs=36.7
Q ss_pred EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHh--cCCCCCeEEEEeeCCC
Q psy38 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRH--IEPHRPVFALVGCKLD 101 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~piilv~nK~D 101 (193)
+.+.++|..... ..-+.++|++|+....-...-...+..|+..+... ....+.++.++++--.
T Consensus 35 ~~v~~~~l~~~~------~~~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t~g~ 99 (188)
T 2ark_A 35 TEVRLKHVDEAT------KEDVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSSGG 99 (188)
T ss_dssp EEEEEEETTTCC------HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEESS
T ss_pred CeEEEEEhhhCC------HHHHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEECCC
Confidence 445566654321 23456789999999876533233456666665431 1234578888888543
No 261
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=26.06 E-value=2.1e+02 Score=21.54 Aligned_cols=88 Identities=18% Similarity=0.067 Sum_probs=48.4
Q ss_pred EEEEEeeCCCcccccc-ch------hhhc-----cCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCC
Q psy38 33 IKLQLWDTAGQERFRS-IT------KSYY-----RNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKL 100 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~-~~------~~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 100 (193)
..+.+.||+|...... +. ...+ ...+.++++.|.+.. .+.+.. ...+.+.. ...- +|.||.
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~~---~i~g-vVlTk~ 259 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEAV---NVTG-IILTKL 259 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHHS---CCCE-EEEECG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhcC---CCCE-EEEeCC
Confidence 4577999998633211 10 1111 247888999988633 122221 22233321 2344 678999
Q ss_pred CCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCC
Q psy38 101 DLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134 (193)
Q Consensus 101 Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 134 (193)
|... ....+.+.+...+.|+..++.-.
T Consensus 260 D~~~-------~gG~~l~~~~~~~~Pi~~i~~Ge 286 (306)
T 1vma_A 260 DGTA-------KGGITLAIARELGIPIKFIGVGE 286 (306)
T ss_dssp GGCS-------CTTHHHHHHHHHCCCEEEEECSS
T ss_pred CCcc-------chHHHHHHHHHHCCCEEEEeCCC
Confidence 9633 22336677777888877765543
No 262
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=26.03 E-value=38 Score=23.14 Aligned_cols=34 Identities=12% Similarity=-0.035 Sum_probs=25.0
Q ss_pred CCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEe
Q psy38 90 RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130 (193)
Q Consensus 90 ~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (193)
..|+|++|.-... .-..++..+++...+++++.+
T Consensus 35 krPvil~G~g~~~-------~~a~~~l~~lae~~~iPV~~t 68 (170)
T 3cf4_G 35 KRPLLMVGTLALD-------PELLDRVVKISKAANIPIAAT 68 (170)
T ss_dssp SSEEEEECSTTCC-------HHHHHHHHHHHHHHTCCEEEC
T ss_pred CCCEEEECCCccc-------hhHHHHHHHHHHHhCCCEEEC
Confidence 4799999976542 124567788999999998754
No 263
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=25.82 E-value=82 Score=25.98 Aligned_cols=92 Identities=17% Similarity=0.075 Sum_probs=47.5
Q ss_pred EEEEEeeCCCcccccc-ch------hh----h-ccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCC
Q psy38 33 IKLQLWDTAGQERFRS-IT------KS----Y-YRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKL 100 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~-~~------~~----~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 100 (193)
+.+.+.||+|...... +. .. . ....+-++++.|.+.... .......+.... .... +|.||.
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~---al~~ak~f~~~~---~itg-vIlTKL 448 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN---AVSQAKLFHEAV---GLTG-ITLTKL 448 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH---HHHHHHHHHHHT---CCSE-EEEECG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH---HHHHHHHHHhhc---CCCE-EEEEcC
Confidence 3466899999743211 11 00 1 112456888998765321 112222333322 2444 789998
Q ss_pred CCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHH
Q psy38 101 DLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVEN 140 (193)
Q Consensus 101 Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e 140 (193)
|-.. ....+..++...+.++..+. +|.++++
T Consensus 449 D~ta-------kgG~~lsi~~~~~~PI~fig--~Ge~vdD 479 (503)
T 2yhs_A 449 DGTA-------KGGVIFSVADQFGIPIRYIG--VGERIED 479 (503)
T ss_dssp GGCS-------CCTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred CCcc-------cccHHHHHHHHHCCCEEEEe--cCCChhh
Confidence 8422 22234566666777776644 3444443
No 264
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=25.66 E-value=2.2e+02 Score=21.58 Aligned_cols=92 Identities=20% Similarity=0.167 Sum_probs=49.0
Q ss_pred EEEEEeeCCCcccccc-chh------hhc-----cCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCC
Q psy38 33 IKLQLWDTAGQERFRS-ITK------SYY-----RNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKL 100 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~-~~~------~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 100 (193)
+.+.|+||+|...... +.. ..+ ..+|.++++.+.+.. .+.+. .+......-.. .=+|.||.
T Consensus 192 yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~----~~~~~~~~~~i-~GvVltk~ 264 (320)
T 1zu4_A 192 YDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVI----QAEEFSKVADV-SGIILTKM 264 (320)
T ss_dssp CSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHH----HHHHHTTTSCC-CEEEEECG
T ss_pred CCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHH----HHHHHhhcCCC-cEEEEeCC
Confidence 5688999999755321 110 011 237888999988632 22222 22222211122 23789999
Q ss_pred CCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHH
Q psy38 101 DLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVEN 140 (193)
Q Consensus 101 Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e 140 (193)
|-.. + ...+..+....+.++..+.. |+++++
T Consensus 265 d~~~----~---~g~~~~~~~~~~~Pi~~i~~--Ge~~~d 295 (320)
T 1zu4_A 265 DSTS----K---GGIGLAIKELLNIPIKMIGV--GEKVDD 295 (320)
T ss_dssp GGCS----C---TTHHHHHHHHHCCCEEEEEC--SSSTTC
T ss_pred CCCC----c---hhHHHHHHHHHCcCEEEEeC--CCCccc
Confidence 9643 1 12445666667887766543 344443
No 265
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=24.92 E-value=2.1e+02 Score=21.20 Aligned_cols=100 Identities=12% Similarity=0.075 Sum_probs=56.9
Q ss_pred EEEeeCCCccccccchhhhc-cCccEEEEEEeCCCh-hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38 35 LQLWDTAGQERFRSITKSYY-RNSVGALLVYDITSR-ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS 112 (193)
Q Consensus 35 l~l~D~~g~~~~~~~~~~~~-~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~ 112 (193)
+.++|.+-+.....+..... .++|++.+-.-.+.. .+...+.++++.+.+....+.+++ +||-.. ++
T Consensus 158 ~eVi~LG~~vp~e~iv~aa~e~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~v-ivGG~~----------~~ 226 (262)
T 1xrs_B 158 IDAYNLGSQVANEDFIKKAVELEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVL-LCGGPR----------IN 226 (262)
T ss_dssp EEEEECCSSBCHHHHHHHHHHTTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEE-EEECTT----------CC
T ss_pred cEEEECCCCCCHHHHHHHHHHcCCCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEE-EEECCc----------CC
Confidence 44556554433333333322 356766655544431 167778888888877543334676 555432 22
Q ss_pred HHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38 113 EAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152 (193)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~ 152 (193)
.+++...|+..+. .++....++...+...+..+
T Consensus 227 ----~~~a~~iGad~~~---~da~~~~~~a~~l~~~~~~~ 259 (262)
T 1xrs_B 227 ----NEIAKELGYDAGF---GPGRFADDVATFAVKTLNDR 259 (262)
T ss_dssp ----HHHHHTTTCSEEE---CTTCCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHcCCeEEE---CCchHHHHHHHHHHHHHHhh
Confidence 2467778886664 44457777777777766544
No 266
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=24.87 E-value=1.3e+02 Score=22.40 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=36.8
Q ss_pred ceeeEEEEEEEecCCcEEEEEEeeCC--CccccccchhhhccCccEEEEEEeCCC----hhHHhhHHHHHHHHHHhcCCC
Q psy38 16 VGVDFFARLVTMRDGARIKLQLWDTA--GQERFRSITKSYYRNSVGALLVYDITS----RASFEHIPVWMMEAKRHIEPH 89 (193)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~l~D~~--g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~ 89 (193)
-|+|+.+..+.+ +.....+-++|.+ |..-.+. ....+.+.+ ++++.|-.. .-+++++..+..++.+.....
T Consensus 9 ~~~~~~~~~~~~-~~~~~~IgvfDSGvGGLtv~~~-i~~~lP~e~-~iy~~D~a~~PYG~ks~e~i~~~~~~~~~~L~~~ 85 (274)
T 3uhf_A 9 SGVDLGTENLYF-QSNAMKIGVFDSGVGGLSVLKS-LYEARLFDE-IIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQF 85 (274)
T ss_dssp --------CCCC-CCSCCEEEEEESSSTTHHHHHH-HHHTTCCSE-EEEEECTTTCCCTTSCHHHHHHHHHHHHHHHTTS
T ss_pred cccccccceeec-cCCCCeEEEEECCCChHHHHHH-HHHHCCCCC-EEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Confidence 356666666666 6666678899964 4332222 233344443 456666432 235666655555554444444
Q ss_pred CCeEEEEe
Q psy38 90 RPVFALVG 97 (193)
Q Consensus 90 ~~piilv~ 97 (193)
+.-.|+++
T Consensus 86 g~d~IVIA 93 (274)
T 3uhf_A 86 QIDMLIIA 93 (274)
T ss_dssp CCSEEEEC
T ss_pred CCCEEEEe
Confidence 44444443
No 267
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=23.83 E-value=61 Score=26.90 Aligned_cols=70 Identities=7% Similarity=-0.078 Sum_probs=44.7
Q ss_pred HhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY 150 (193)
Q Consensus 72 ~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~ 150 (193)
+.++.+.++.+..+ ..|+++..|+..-.. .-..+..+++|.+.|+.+..+=++-|.|-.++=+.+++.+-
T Consensus 360 ~~NL~kHien~~~f----GvpvVVaiN~F~tDT-----~aEi~~v~~~~~~~G~~~~~~wa~GG~G~~~LA~~Vv~~~~ 429 (557)
T 3pzx_A 360 FANLEKHIENIGKF----GVPAVVAINAFPTDT-----EAELNLLYELCAKAGAEVALSWAKGGEGGLELARKVLQTLE 429 (557)
T ss_dssp HHHHHHHHHHHHTT----TCCEEEEEECCTTCC-----HHHHHHHHHHCCSSEEEEECHHHHGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc----CCCeEEEEeCCCCCC-----HHHHHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHHh
Confidence 33455555555543 478889999976432 12334456777777876655546667788888777777553
No 268
>2pd2_A Hypothetical protein ST0148; structural genomics, NPPSFA, national project on protein STR and functional analyses; 2.06A {Sulfolobus tokodaii}
Probab=22.81 E-value=1.4e+02 Score=18.22 Aligned_cols=65 Identities=9% Similarity=0.001 Sum_probs=32.4
Q ss_pred EEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEec
Q psy38 63 VYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131 (193)
Q Consensus 63 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~S 131 (193)
+|++++++.+.....+...+.+.. + ...+.+|.+---..-- ...-+..+..+.....|+.++.|.
T Consensus 4 v~~v~d~~~~~~al~~~~n~~~~~-~-~~~v~vv~~g~gv~~~--~~~~~~~~~i~~l~~~gV~~~~C~ 68 (108)
T 2pd2_A 4 VVQIKDFDKVPQALRSVINLYNDI-K-DAEIEVVLHQSAIKAL--LKDSDTRSIIEDLIKKNILIVGCE 68 (108)
T ss_dssp EEEECCGGGHHHHHHHHHHHHHHS-T-TCEEEEEECGGGGGGG--BTTCTTHHHHHHHHHTTCEEEEEH
T ss_pred EEEeCChHHHHHHHHHHHHHHhhC-C-CCeEEEEEcChHHHHH--HcCchHHHHHHHHHHCcCEEEecH
Confidence 455557777777766666666652 2 4555455443222100 011123333334445688777764
No 269
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=21.99 E-value=43 Score=24.58 Aligned_cols=80 Identities=15% Similarity=0.085 Sum_probs=37.8
Q ss_pred ccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHH---HHHhCCCcEEEecCC
Q psy38 57 SVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKA---FASQNDILHFETSSR 133 (193)
Q Consensus 57 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~---~~~~~~~~~~~~Sa~ 133 (193)
..++|+||+...+.....+.. ..... .....+++|+.-.+... ...++..+ .+...|+.|+.....
T Consensus 103 iggII~~f~~p~~~~~~~i~~----~~~~~-~~dg~~v~Vg~~~~~~~------~~~de~~e~~~~~~~~GfE~V~~~~~ 171 (233)
T 3uc9_A 103 MAGIILITDIRQTKPQELLHQ----FMIAA-HRNTFVVLVNVNEEVEQ------DEIDELNEIWSNAFTNVIEFVNWKRS 171 (233)
T ss_dssp EEEEEEEECHHHHCGGGTHHH----HHHHS-CTTCEEEEEECCTTCCH------HHHHHHHHHHTTSSSSCEEEEECC--
T ss_pred cceEEEEEeCCCcchHHHHHH----HhccC-CCCceEEEEecCCccCC------CchhhHHHHHHHHHhcCeEEEEecCC
Confidence 478999997655544443332 22222 22345556654332211 11111222 223356778765321
Q ss_pred ----------CCcCHHHHHHHHHH
Q psy38 134 ----------SGFQVENAFTAVTQ 147 (193)
Q Consensus 134 ----------~~~~i~e~f~~i~~ 147 (193)
...|+..+.++|-.
T Consensus 172 ~~~~~~ne~gE~~Gi~RI~E~Le~ 195 (233)
T 3uc9_A 172 KPTVNHNDYGEKLGLDRIQEIIDT 195 (233)
T ss_dssp --CCCBCTTSCBCHHHHHHHHHHH
T ss_pred CcccccccccchhCHHHHHHHHHh
Confidence 23367776666544
No 270
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=21.94 E-value=1.4e+02 Score=23.14 Aligned_cols=34 Identities=9% Similarity=-0.064 Sum_probs=24.1
Q ss_pred EEEEEEeeCCCccccccchhhhccCccEEEEEEeCC
Q psy38 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67 (193)
Q Consensus 32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 67 (193)
.+.+.|+|++..-.. .....+..+|.+|++...+
T Consensus 244 ~yD~ViiD~pp~~~~--~~~~~l~~aD~vliv~~p~ 277 (398)
T 3ez2_A 244 DYDFILVDSGPHLDA--FLKNALASANILFTPLPPA 277 (398)
T ss_dssp TCSEEEEEECSCCSH--HHHHHHHHCSEEEEEECCS
T ss_pred cCCEEEEeCCCCccH--HHHHHHHHCCEEEEEecCc
Confidence 356889999876432 2344566899999999765
No 271
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=21.43 E-value=1.5e+02 Score=18.82 Aligned_cols=66 Identities=11% Similarity=-0.076 Sum_probs=37.9
Q ss_pred hccCccEEEEEEeCCChhHHh--hHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCc
Q psy38 53 YYRNSVGALLVYDITSRASFE--HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126 (193)
Q Consensus 53 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~ 126 (193)
.+.+.|++|+....-...-.. .+..|+..+... ..+.++.++++--.- ..-......+.....|+.
T Consensus 42 ~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~--l~~k~~~~f~t~g~~------~~~a~~~l~~~l~~~G~~ 109 (138)
T 5nul_A 42 ELLNEDILILGCSAMTDEVLEESEFEPFIEEISTK--ISGKKVALFGSYGWG------DGKWMRDFEERMNGYGCV 109 (138)
T ss_dssp HHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG--CTTCEEEEEEEESSS------CSHHHHHHHHHHHHTTCE
T ss_pred HHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh--cCCCEEEEEEecCCC------CChHHHHHHHHHHHCCCE
Confidence 456789999988764322121 356666666543 346788888875321 112344555666666653
No 272
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=21.23 E-value=2.1e+02 Score=19.72 Aligned_cols=86 Identities=8% Similarity=-0.041 Sum_probs=45.3
Q ss_pred EEEEEeeCCCcccccc----chhhhccCcc-EEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe-EEEEeeCCCCCCCC
Q psy38 33 IKLQLWDTAGQERFRS----ITKSYYRNSV-GALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV-FALVGCKLDLLQSG 106 (193)
Q Consensus 33 ~~l~l~D~~g~~~~~~----~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~ 106 (193)
+.+.++|++|.-.... .........+ .+|++.... ..++.++...++.+... ..+ .-+|.|+.|...
T Consensus 109 yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~-~~~~~~~~~~i~~l~~~----~~~i~gvvlN~~~~~~-- 181 (224)
T 1byi_A 109 ADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVK-LGCINHAMLTAQVIQHA----GLTLAGWVANDVTPPG-- 181 (224)
T ss_dssp CSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECS-TTHHHHHHHHHHHHHHT----TCCEEEEEEECCSSCC--
T ss_pred CCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCC-CCcHHHHHHHHHHHHHC----CCcEEEEEEeCCCCch--
Confidence 5678999987543111 1112222222 366777653 45666666666655432 233 337899988532
Q ss_pred CCCccCHHHHHHHHHhCCCcEE
Q psy38 107 VPREVSEAEAKAFASQNDILHF 128 (193)
Q Consensus 107 ~~~~v~~~~~~~~~~~~~~~~~ 128 (193)
....+....+.+..+.+++
T Consensus 182 ---~~~~~~~~~l~~~~~~~vl 200 (224)
T 1byi_A 182 ---KRHAEYMTTLTRMIPAPLL 200 (224)
T ss_dssp ---TTHHHHHHHHHHHSSSCEE
T ss_pred ---hhHHHHHHHHHHHcCCCEE
Confidence 1223334445555677665
No 273
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=21.15 E-value=1.1e+02 Score=21.57 Aligned_cols=49 Identities=12% Similarity=-0.003 Sum_probs=30.1
Q ss_pred ccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeC
Q psy38 47 RSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCK 99 (193)
Q Consensus 47 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 99 (193)
.+..+.-++++..+|++.......+ .-..| +|.......+.|||+|-..
T Consensus 70 KrrLReRI~~Sk~vIllIs~~T~~s--~~v~w--EIe~Ai~~~~~PII~Vy~~ 118 (189)
T 3hyn_A 70 KPRLHTRLDNSKNIILFLSSITANS--RALRE--EMNYGIGTKGLPVIVIYPD 118 (189)
T ss_dssp HHHHHHHHHTEEEEEEECCTTCCCC--HHHHH--HHHHHTTTTCCCEEEEETT
T ss_pred HHHHHHHHHhcCcEEEEEecCcccc--chhHH--HHHHHHHhcCCcEEEEECC
Confidence 3345666778999988886654433 22334 6776664667898555433
Done!