RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy38
(193 letters)
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 211 bits (540), Expect = 3e-70
Identities = 63/191 (32%), Positives = 100/191 (52%), Gaps = 10/191 (5%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ S T+GV+F R + + +G RIK Q+WDTAGQER+R+IT +YYR +VGAL+VYDI+
Sbjct: 38 FNMDSKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDIS 96
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
+S+E+ W+ E + + + + L+G K DL R V E+K FA +N +L
Sbjct: 97 KSSSYENCNHWLSELRENADDN-VAVGLIGNKSDLAHL---RAVPTEESKTFAQENQLLF 152
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSR-----TNAVLDDDL 182
ETS+ + V+ AF + IY +V + D + T ++
Sbjct: 153 TETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGNANGASAPNGPTISLTPTPN 212
Query: 183 MLAEPAKSSCC 193
+ ++CC
Sbjct: 213 ENKKANGNNCC 223
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 209 bits (535), Expect = 5e-70
Identities = 65/155 (41%), Positives = 99/155 (63%), Gaps = 5/155 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ S+ T+GV+F ++++ + G +KLQ+WDTAGQERFRS+T+SYYR + GALLVYDIT
Sbjct: 35 FKDDSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDIT 93
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
SR ++ + W+ +A+ + V L G K DL REV+ EA FA +N+++
Sbjct: 94 SRETYNALTNWLTDARMLASQN-IVIILCGNKKDLDAD---REVTFLEASRFAQENELMF 149
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVED 162
ETS+ +G VE AF ++I N+++SG+ E
Sbjct: 150 LETSALTGENVEEAFVQCARKILNKIESGELDPER 184
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 209 bits (534), Expect = 1e-69
Identities = 69/155 (44%), Positives = 99/155 (63%), Gaps = 5/155 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ Q S+ T+GV+F +R+V + G +KLQ+WDTAGQERFRS+T+SYYR + GALLVYDIT
Sbjct: 50 FKQDSNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDIT 108
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
SR ++ + W+ +A+ P+ V L G K DL REV+ EA FA +N+++
Sbjct: 109 SRETYNSLAAWLTDARTLASPN-IVVILCGNKKDLDPE---REVTFLEASRFAQENELMF 164
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVED 162
ETS+ +G VE AF + I N++ SG+ E
Sbjct: 165 LETSALTGENVEEAFLKCARTILNKIDSGELDPER 199
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 207 bits (529), Expect = 5e-69
Identities = 69/151 (45%), Positives = 100/151 (66%), Gaps = 5/151 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ + D T+GV+F AR+V + DG +IKLQ+WDTAGQE FRSIT+SYYR + GALLVYDIT
Sbjct: 46 FQPVHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT 104
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
R +F H+ W+ +A++H + V L+G K DL R+V E +AFA ++ ++
Sbjct: 105 RRETFNHLTSWLEDARQHSSSNM-VIMLIGNKSDLESR---RDVKREEGEAFAREHGLIF 160
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDY 158
ETS+++ VE AF +EIY ++Q G +
Sbjct: 161 METSAKTACNVEEAFINTAKEIYRKIQQGLF 191
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 207 bits (528), Expect = 9e-69
Identities = 56/162 (34%), Positives = 85/162 (52%), Gaps = 15/162 (9%)
Query: 12 SDPTVGVDFFARLVTM---------RDGARIKLQLWDTAGQERFRSITKSYYRNSVGALL 62
TVG+DF + V G RI LQLWDTAG ERFRS+T +++R+++G LL
Sbjct: 40 FITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLL 99
Query: 63 VYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ 122
++D+T+ SF ++ W+ + + H P L G K DL R V E EA+ A +
Sbjct: 100 LFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQ---RAVKEEEARELAEK 156
Query: 123 NDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGW 164
I +FETS+ +G + +A + I R++ V+ W
Sbjct: 157 YGIPYFETSAANGTNISHAIEMLLDLIMKRMER---SVDKSW 195
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 204 bits (522), Expect = 7e-68
Identities = 64/163 (39%), Positives = 88/163 (53%), Gaps = 5/163 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ S T+GV+F R + + DG IK Q+WDTAGQER+R IT +YYR +VGALLVYDI
Sbjct: 30 FNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIA 88
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
++E++ W+ E + H + + V LVG K DL R V EA+AFA +N++
Sbjct: 89 KHLTYENVERWLKELRDHADSN-IVIMLVGNKSDLRHL---RAVPTDEARAFAEKNNLSF 144
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTG 170
ETS+ VE AF + EIY V +
Sbjct: 145 IETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGN 187
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 203 bits (519), Expect = 3e-67
Identities = 56/160 (35%), Positives = 88/160 (55%), Gaps = 12/160 (7%)
Query: 12 SDPTVGVDFFARLVTMRD---------GARIKLQLWDTAGQERFRSITKSYYRNSVGALL 62
TVG+DF + V ++ LQLWDTAGQERFRS+T +++R+++G LL
Sbjct: 54 FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLL 113
Query: 63 VYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ 122
++D+TS+ SF ++ WM + + + P L+G K DL REV+E +A+ A +
Sbjct: 114 MFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ---REVNERQARELADK 170
Query: 123 NDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVED 162
I +FETS+ +G VE A + I R++ K +
Sbjct: 171 YGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCVEKTQI 210
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 202 bits (517), Expect = 4e-67
Identities = 57/159 (35%), Positives = 90/159 (56%), Gaps = 7/159 (4%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
T+GVDF + +++ DG + KL +WDTAGQERFR++T SYYR + G +LVYD+T R +
Sbjct: 44 LAATIGVDFKVKTISV-DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDT 102
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
F + W+ E + + + V LVG K+D REV E FA ++ +L E S
Sbjct: 103 FVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN----REVDRNEGLKFARKHSMLFIEAS 158
Query: 132 SRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTG 170
+++ V+ AF + ++I G ++ E+ G +G
Sbjct: 159 AKTCDGVQCAFEELVEKIIQTP--GLWESENQNSGPSSG 195
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 200 bits (512), Expect = 2e-66
Identities = 62/143 (43%), Positives = 95/143 (66%), Gaps = 5/143 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
++ T+GV+F R++ + G +IKLQ+WDTAGQERFR++T+SYYR + GAL+VYDIT
Sbjct: 40 FMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT 98
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
R+++ H+ W+ +A+ P+ V L+G K DL R+V+ EAK FA +N +L
Sbjct: 99 RRSTYNHLSSWLTDARNLTNPN-TVIILIGNKADLEAQ---RDVTYEEAKQFAEENGLLF 154
Query: 128 FETSSRSGFQVENAFTAVTQEIY 150
E S+++G VE+AF ++IY
Sbjct: 155 LEASAKTGENVEDAFLEAAKKIY 177
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 199 bits (508), Expect = 9e-66
Identities = 63/148 (42%), Positives = 86/148 (58%), Gaps = 5/148 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ S T+GV+F R V + A +K Q+WDTAG ER+R+IT +YYR +VGALLV+D+T
Sbjct: 50 FSHDSRTTIGVEFSTRTVML-GTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLT 108
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
++ + W+ E H E V LVG K DL Q+ REV EA+ FA N +L
Sbjct: 109 KHQTYAVVERWLKELYDHAEAT-IVVMLVGNKSDLSQA---REVPTEEARMFAENNGLLF 164
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQS 155
ETS+ VE AF V +EI+ +V
Sbjct: 165 LETSALDSTNVELAFETVLKEIFAKVSK 192
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 199 bits (508), Expect = 1e-65
Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 5/163 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ TVG+DF + + + RIKLQ+WDTAG ER+R+IT +YYR ++G +L+YDIT
Sbjct: 33 FTPAFVSTVGIDFKVKTIYR-NDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDIT 91
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
+ SF + W + K + + LVG K D+ R VS + A
Sbjct: 92 NEESFNAVQDWSTQIKTYSWDN-AQVLLVGNKCDMEDE---RVVSSERGRQLADHLGFEF 147
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTG 170
FE S++ V+ F + I ++ + G K G
Sbjct: 148 FEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQG 190
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 199 bits (507), Expect = 1e-65
Identities = 62/161 (38%), Positives = 86/161 (53%), Gaps = 5/161 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
Y + T+GVDF R + + DG IKLQ+WDTAGQERFR+IT SYYR + G ++VYD+T
Sbjct: 41 YTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 99
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
+ SF ++ W+ E R+ + LVG K DL + V AK FA I
Sbjct: 100 DQESFNNVKQWLQEIDRYASENVNKL-LVGNKCDLTTK---KVVDYTTAKEFADSLGIPF 155
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIK 168
ETS+++ VE +F + EI R+ G +K
Sbjct: 156 LETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVK 196
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 198 bits (506), Expect = 2e-65
Identities = 62/143 (43%), Positives = 85/143 (59%), Gaps = 5/143 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ S T+GV+F R + + DG IK Q+WDTAG ER+R+IT +YYR +VGALLVYDI
Sbjct: 54 FNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIA 112
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
++E++ W+ E + H + + V LVG K DL R V EA+AFA +N +
Sbjct: 113 KHLTYENVERWLKELRDHADSN-IVIMLVGNKSDLRHL---RAVPTDEARAFAEKNGLSF 168
Query: 128 FETSSRSGFQVENAFTAVTQEIY 150
ETS+ VE AF + EIY
Sbjct: 169 IETSALDSTNVEAAFQTILTEIY 191
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 198 bits (505), Expect = 2e-65
Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 5/146 (3%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
T+G+DFF R +T+ + LQ+WD GQ + Y + G LLVYDIT+ S
Sbjct: 35 YKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQS 94
Query: 72 FEHIPVWMMEAKRHIE--PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129
FE++ W K+ E +P+ ALVG K+DL R + + F +N
Sbjct: 95 FENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHM---RTIKPEKHLRFCQENGFSSHF 151
Query: 130 TSSRSGFQVENAFTAVTQEIYNRVQS 155
S+++G V F V EI +
Sbjct: 152 VSAKTGDSVFLCFQKVAAEILGIKLN 177
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 197 bits (502), Expect = 5e-65
Identities = 54/142 (38%), Positives = 88/142 (61%), Gaps = 5/142 (3%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
TVG+DF +++ + DG ++KLQ+WDTAGQERFRS+T +YYR++ LL+YD+T++ASF+
Sbjct: 42 STVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFD 100
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
+I W+ E + + L+G K+D R V + + A + + ETS++
Sbjct: 101 NIQAWLTEIHEYAQHD-VALMLLGNKVDSAHE---RVVKREDGEKLAKEYGLPFMETSAK 156
Query: 134 SGFQVENAFTAVTQEIYNRVQS 155
+G V+ AFTA+ +E+ R
Sbjct: 157 TGLNVDLAFTAIAKELKRRSMK 178
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 195 bits (499), Expect = 3e-64
Identities = 63/186 (33%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
Y T+GVDF + V + DG +KLQ+WDTAGQERFR+IT SYYR S G ++VYD+T
Sbjct: 33 YTNDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVT 91
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
+ SF + +W+ E R+ + LVG K DL R V AK FA N +
Sbjct: 92 DQESFNGVKMWLQEIDRYATST-VLKLLVGNKCDLKDK---RVVEYDVAKEFADANKMPF 147
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEP 187
ETS+ VE+AF + ++I + + + K + +
Sbjct: 148 LETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNVNLKGQ--------SLT 199
Query: 188 AKSSCC 193
CC
Sbjct: 200 NTGGCC 205
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 194 bits (495), Expect = 1e-63
Identities = 65/150 (43%), Positives = 93/150 (62%), Gaps = 6/150 (4%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ + T+GVDF + + + G R+KLQ+WDTAGQERFR+IT+SYYR++ GA+L YDIT
Sbjct: 54 FSERQGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDIT 112
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
R+SF +P W+ + +++ + V L+G K DL + REVS AEA++ A DIL
Sbjct: 113 KRSSFLSVPHWIEDVRKYAGSN-IVQLLIGNKSDLSEL---REVSLAEAQSLAEHYDILC 168
Query: 128 F-ETSSRSGFQVENAFTAVTQEIYNRVQSG 156
ETS++ VE AF V E+ R
Sbjct: 169 AIETSAKDSSNVEEAFLRVATELIMRHGGP 198
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 194 bits (495), Expect = 1e-63
Identities = 56/149 (37%), Positives = 87/149 (58%), Gaps = 5/149 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ T+GVDF + V + +G ++KLQ+WDTAGQERFRSIT+SYYR++ +L YDIT
Sbjct: 51 FPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDIT 109
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
SF +P W+ E +++ + LVG K+DL + REVS+ A+ F+ D+ +
Sbjct: 110 CEESFRCLPEWLREIEQYASNK-VITVLVGNKIDLAER---REVSQQRAEEFSEAQDMYY 165
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSG 156
ETS++ VE F + + + +
Sbjct: 166 LETSAKESDNVEKLFLDLACRLISEARQN 194
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 193 bits (492), Expect = 2e-63
Identities = 57/156 (36%), Positives = 87/156 (55%), Gaps = 5/156 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ T+G+DF R + + DG RIKLQ+WDTAGQERFR+IT +YYR ++G +LVYDIT
Sbjct: 33 FNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDIT 91
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
+ SF++I W+ + H ++G K D+ R+VS+ + A I
Sbjct: 92 NEKSFDNIRNWIRNIEEHASAD-VEKMILGNKCDVNDK---RQVSKERGEKLALDYGIKF 147
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDG 163
ETS+++ VENAF + ++I ++ G
Sbjct: 148 METSAKANINVENAFFTLARDIKAKMDKNWKATAAG 183
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 193 bits (492), Expect = 2e-63
Identities = 58/144 (40%), Positives = 82/144 (56%), Gaps = 8/144 (5%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFR-SITKSYYRNSVGALLVYDITSRA 70
++ T+GVDF R V + DG RIK+QLWDTAGQERFR S+ + YYRN + VYD+T+ A
Sbjct: 49 TEATIGVDFRERAVDI-DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMA 107
Query: 71 SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
SF +P W+ E K+H+ + LVG K DL + +V A+ FA + + FET
Sbjct: 108 SFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSA---IQVPTDLAQKFADTHSMPLFET 164
Query: 131 S---SRSGFQVENAFTAVTQEIYN 151
S VE F + ++ +
Sbjct: 165 SAKNPNDNDHVEAIFMTLAHKLKS 188
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 191 bits (489), Expect = 4e-63
Identities = 51/148 (34%), Positives = 80/148 (54%), Gaps = 6/148 (4%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ T+G+DF + V + +G ++KLQ+WDTAGQERFR+IT +YYR ++G +LVYDIT
Sbjct: 28 FNPSFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDIT 86
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
+F +I W H LVG K D+ R V+ + +A A + I
Sbjct: 87 DERTFTNIKQWFKTVNEHANDE-AQLLLVGNKSDMET----RVVTADQGEALAKELGIPF 141
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQS 155
E+S+++ V F + + I ++ S
Sbjct: 142 IESSAKNDDNVNEIFFTLAKLIQEKIDS 169
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 192 bits (491), Expect = 4e-63
Identities = 53/144 (36%), Positives = 75/144 (52%), Gaps = 5/144 (3%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
T+GVDF + + + DG R LQLWDTAGQERFRSI KSY+R + G LL+YD+T S
Sbjct: 57 ISATLGVDFQMKTLIV-DGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKS 115
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP---REVSEAEAKAFASQNDILHF 128
F +I W+ + P+ LVG K D+ + + V + A L
Sbjct: 116 FLNIREWVDMIEDAAHETVPIM-LVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFC 174
Query: 129 ETSSRSGFQVENAFTAVTQEIYNR 152
ETS++ G + A + +E+ R
Sbjct: 175 ETSAKDGSNIVEAVLHLAREVKKR 198
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 191 bits (488), Expect = 6e-63
Identities = 56/154 (36%), Positives = 85/154 (55%), Gaps = 6/154 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ T+GVDF R V + +G ++KLQ+WDTAGQERFR+IT +YYR + G ++VYD+T
Sbjct: 34 FSGSYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVT 92
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
S SF ++ W+ E ++ + LVG K D + + V +A FA Q I
Sbjct: 93 SAESFVNVKRWLHEINQNCD--DVCRILVGNKNDDPER---KVVETEDAYKFAGQMGIQL 147
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVE 161
FETS++ VE F +T+ + + K +
Sbjct: 148 FETSAKENVNVEEMFNCITELVLRAKKDNLAKQQ 181
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 190 bits (486), Expect = 1e-62
Identities = 47/150 (31%), Positives = 89/150 (59%), Gaps = 5/150 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+++ + T+G FF++ + + + A +K ++WDTAGQER+ S+ YYR + A++V+D+T
Sbjct: 37 FVEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVT 95
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
++ASFE W+ E + P+ V AL G K DLL + R+V+ +A+ +A +N +
Sbjct: 96 NQASFERAKKWVQELQAQGNPNM-VMALAGNKSDLLDA---RKVTAEDAQTYAQENGLFF 151
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGD 157
ETS+++ V+ F + + + + +
Sbjct: 152 METSAKTATNVKEIFYEIARRLPRVQPTEN 181
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 191 bits (487), Expect = 2e-62
Identities = 59/142 (41%), Positives = 81/142 (57%), Gaps = 5/142 (3%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
T+GVDF R + + DG IKLQ+WDTAGQERFR+IT SYYR + G ++VYD+T + S
Sbjct: 62 YISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES 120
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
F ++ W+ E R+ + LVG K DL + V AK FA I ETS
Sbjct: 121 FNNVKQWLQEIDRYASENVNKL-LVGNKCDLTTK---KVVDYTTAKEFADSLGIPFLETS 176
Query: 132 SRSGFQVENAFTAVTQEIYNRV 153
+++ VE +F + EI R+
Sbjct: 177 AKNATNVEQSFMTMAAEIKKRM 198
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 190 bits (484), Expect = 3e-62
Identities = 50/147 (34%), Positives = 74/147 (50%), Gaps = 5/147 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ TVG+DF + V RIKLQ+WDTAGQER+R+IT +YYR ++G LL+YDI
Sbjct: 47 FTPAFVSTVGIDFKVKTVYR-HDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIA 105
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
++ SF + W + K + + LVG K DL R V + + A
Sbjct: 106 NQESFAAVQDWATQIKTYSWDN-AQVILVGNKCDLEDE---RVVPAEDGRRLADDLGFEF 161
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQ 154
FE S++ V+ F + I ++
Sbjct: 162 FEASAKENINVKQVFERLVDVICEKMN 188
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 190 bits (484), Expect = 7e-62
Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 6/168 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ T+G+DF + V + +G ++KLQLWDTAGQERFR+IT +YYR ++G +LVYD+T
Sbjct: 45 FNPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVT 103
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
+F +I W H LVG K D+ R V+ + +A A + I
Sbjct: 104 DERTFTNIKQWFKTVNEHANDE-AQLLLVGNKSDMET----RVVTADQGEALAKELGIPF 158
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTN 175
E+S+++ V F + + I ++ S + + +
Sbjct: 159 IESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGNGKEGNISINSGS 206
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 188 bits (479), Expect = 1e-61
Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 5/143 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ + + T+G F + V + D +K ++WDTAGQER+ S+ YYR + A++VYDIT
Sbjct: 31 FHEFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIT 89
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
+ SF W+ E +R P+ V AL G K DL R V EA+++A N +L
Sbjct: 90 NEESFARAKNWVKELQRQASPNI-VIALSGNKADLANK---RAVDFQEAQSYADDNSLLF 145
Query: 128 FETSSRSGFQVENAFTAVTQEIY 150
ETS+++ V F A+ +++
Sbjct: 146 METSAKTSMNVNEIFMAIAKKLP 168
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 189 bits (482), Expect = 1e-61
Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 8/161 (4%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLW--DTAGQERFRSITKSYYRNSVGALLVYD 65
+++ T GV+ VT+ + ++L+ DTAG + ++ Y+ A+LV+D
Sbjct: 47 FLKDYAMTSGVEVVVAPVTI-PDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFD 105
Query: 66 ITSRASFEHIPVWMMEAKRHIEPHRP--VFALVGCKLDLLQSGVPREVSEAEAKAFASQN 123
++S SFE W K LV K DL +V A+ +A+ N
Sbjct: 106 VSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDL--PPQRHQVRLDMAQDWATTN 163
Query: 124 DILHFETSSR-SGFQVENAFTAVTQEIYNRVQSGDYKVEDG 163
+ F+ S+ G + F ++ Y + +D
Sbjct: 164 TLDFFDVSANPPGKDADAPFLSIATTFYRNYEDKVAAFQDA 204
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 187 bits (478), Expect = 3e-61
Identities = 50/147 (34%), Positives = 77/147 (52%), Gaps = 5/147 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ TVG+DF + V R+KLQ+WDTAGQER+R+IT +YYR ++G +L+YDIT
Sbjct: 48 FTPAFVSTVGIDFKVKTVYR-HEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT 106
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
+ SF + W + K + + LVG K D+ + R V + + A Q
Sbjct: 107 NEESFNAVQDWATQIKTYSWDN-AQVILVGNKCDMEEE---RVVPTEKGQLLAEQLGFDF 162
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQ 154
FE S++ V AF + I +++
Sbjct: 163 FEASAKENISVRQAFERLVDAICDKMS 189
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 187 bits (478), Expect = 4e-61
Identities = 54/147 (36%), Positives = 83/147 (56%), Gaps = 6/147 (4%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ + TVGVDF + V + G +I+LQ+WDTAGQERF SIT +YYR++ G +LVYDIT
Sbjct: 51 FCEACKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDIT 109
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDIL 126
+ +F+ +P WM ++ LVG KLD RE++ + + FA Q +
Sbjct: 110 KKETFDDLPKWMKMIDKYASED-AELLLVGNKLDCETD---REITRQQGEKFAQQITGMR 165
Query: 127 HFETSSRSGFQVENAFTAVTQEIYNRV 153
E S++ F V+ F + +I ++
Sbjct: 166 FCEASAKDNFNVDEIFLKLVDDILKKM 192
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 186 bits (475), Expect = 5e-61
Identities = 48/139 (34%), Positives = 72/139 (51%), Gaps = 5/139 (3%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
+PT+G F + V K +WDTAG ERFR++ YYR S A++VYDIT +
Sbjct: 35 INPTIGASFMTKTVQY-QNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEET 93
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
F + W+ E ++H P V A+ G K DL REV E +AK +A + ETS
Sbjct: 94 FSTLKNWVRELRQHGPPS-IVVAIAGNKCDLTDV---REVMERDAKDYADSIHAIFVETS 149
Query: 132 SRSGFQVENAFTAVTQEIY 150
+++ + F +++ I
Sbjct: 150 AKNAININELFIEISRRIP 168
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 187 bits (477), Expect = 7e-61
Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 17/182 (9%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
T+G+DF ++ + + + ++LQLWDTAG ERFRS+ SY R+S A++VYDIT+ S
Sbjct: 45 YQATIGIDFLSKTMYL-EDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNS 103
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
F+ W+ + + + LVG K DL R+VS E + A + +++ ETS
Sbjct: 104 FQQTTKWIDDVRTERGSD-VIIMLVGNKTDLADK---RQVSIEEGERKAKELNVMFIETS 159
Query: 132 SRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEPAKSS 191
+++G+ V+ F V + + D ED IK + P
Sbjct: 160 AKAGYNVKQLFRRVAAALPGMESTQDRSREDM-IDIKLEKPQEQ-----------PVSEG 207
Query: 192 CC 193
C
Sbjct: 208 GC 209
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 186 bits (475), Expect = 8e-61
Identities = 50/144 (34%), Positives = 72/144 (50%), Gaps = 5/144 (3%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
PT+G F + V K +WDTAGQERF S+ YYR S A++VYDIT + S
Sbjct: 52 ISPTIGASFMTKTVPC-GNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDS 110
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
F + W+ E K H + V A+ G K DL REV +AK +A + ETS
Sbjct: 111 FYTLKKWVKELKEHGPEN-IVMAIAGNKCDLSDI---REVPLKDAKEYAESIGAIVVETS 166
Query: 132 SRSGFQVENAFTAVTQEIYNRVQS 155
+++ +E F ++++I
Sbjct: 167 AKNAINIEELFQGISRQIPPLDPH 190
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 185 bits (471), Expect = 2e-60
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
T+G F + + + G R+ L +WDTAGQERF ++ YYR+S GA+LVYDIT S
Sbjct: 35 HITTLGASFLTKKLNI-GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDS 93
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
F+ + W+ E ++ + +VG K+DL + R VS EA+++A H+ TS
Sbjct: 94 FQKVKNWVKELRKMLGNE-ICLCIVGNKIDLEKE---RHVSIQEAESYAESVGAKHYHTS 149
Query: 132 SRSGFQVENAFTAVTQEIY 150
++ +E F + + +
Sbjct: 150 AKQNKGIEELFLDLCKRMI 168
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 183 bits (466), Expect = 1e-59
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 6/141 (4%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
T+GVDF R + + + ++L LWDTAGQE F +ITK+YYR + +LV+ T R S
Sbjct: 34 YKKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRES 92
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
FE I W + + ALV K+DLL + EA+ A + + + TS
Sbjct: 93 FEAISSWREKVVAEVGD--IPTALVQNKIDLLDD---SCIKNEEAEGLAKRLKLRFYRTS 147
Query: 132 SRSGFQVENAFTAVTQEIYNR 152
+ V F + ++ +
Sbjct: 148 VKEDLNVSEVFKYLAEKHLQK 168
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 182 bits (464), Expect = 2e-59
Identities = 49/140 (35%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
T+G+DF ++ + + + ++LQLWDTAGQERFRS+ SY R+S A++VYDIT+ S
Sbjct: 43 YQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNS 101
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
F W+ + + + LVG K DL R+VS E + A + +++ ETS
Sbjct: 102 FHQTSKWIDDVRTERGSD-VIIMLVGNKTDLSDK---RQVSTEEGERKAKELNVMFIETS 157
Query: 132 SRSGFQVENAFTAVTQEIYN 151
+++G+ V+ F V +
Sbjct: 158 AKAGYNVKQLFRRVAAALPG 177
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 181 bits (463), Expect = 3e-59
Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 9/145 (6%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
T+GV+F + + + DG + +Q+WDTAGQERFRS+ +YR S LL + + S
Sbjct: 36 LFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQS 94
Query: 72 FEHIPVWMMEAKRHIEPHRP---VFALVGCKLDLLQSGVPREVSEAEAKAFASQN-DILH 127
F+++ W E + + P F ++G K+D+ + R+VS EA+A+ N D +
Sbjct: 95 FQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE----RQVSTEEAQAWCRDNGDYPY 150
Query: 128 FETSSRSGFQVENAFTAVTQEIYNR 152
FETS++ V AF + +
Sbjct: 151 FETSAKDATNVAAAFEEAVRRVLAT 175
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 181 bits (461), Expect = 8e-59
Identities = 51/148 (34%), Positives = 80/148 (54%), Gaps = 6/148 (4%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
T+G DF + VT+ +Q+WDTAGQERF+S+ ++YR + +LVYD+T+ +S
Sbjct: 37 YKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASS 96
Query: 72 FEHIPVWMMEAKRHIEPHRP---VFALVGCKLDLLQSGVPREVSEAEAKAFA-SQNDILH 127
FE+I W E H + P F ++G K+D + VSE A+ A S DI
Sbjct: 97 FENIKSWRDEFLVHANVNSPETFPFVILGNKIDA--EESKKIVSEKSAQELAKSLGDIPL 154
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQS 155
F TS+++ V+ AF + + + Q+
Sbjct: 155 FLTSAKNAINVDTAFEEIARSALQQNQA 182
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 181 bits (461), Expect = 2e-58
Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
T+G DF + V + D + +Q+WDTAGQERF+S+ ++YR + +LV+D+T+ +
Sbjct: 37 YKATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNT 95
Query: 72 FEHIPVWMMEAKRHIEPHRP---VFALVGCKLDLLQSGVPREVSEAEAKAF-ASQNDILH 127
F+ + W E P P F ++G K+DL R+V+ A+A+ S+N+I +
Sbjct: 96 FKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL----ENRQVATKRAQAWCYSKNNIPY 151
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEP 187
FETS++ VE AF + + + + E E IK + A+
Sbjct: 152 FETSAKEAINVEQAFQTIARNALKQETEVELYNEFP-EPIKLDKNER----------AKA 200
Query: 188 AKSSCC 193
+ SC
Sbjct: 201 SAESCS 206
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 174 bits (443), Expect = 9e-56
Identities = 43/184 (23%), Positives = 80/184 (43%), Gaps = 43/184 (23%)
Query: 8 YIQISDPTVGVDFFARLVTMRD------------------------------------GA 31
+ + ++ T+G F +V + D
Sbjct: 32 FHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLC 91
Query: 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRP 91
IK +WDTAGQER+ SI YYR + A++V+DI++ + + W+ + K
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNY 148
Query: 92 VFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151
+ LV K+D + +V E + +A N++L +TS+++G ++N F + +EIY
Sbjct: 149 IIILVANKIDKNK----FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204
Query: 152 RVQS 155
+ +
Sbjct: 205 NIIN 208
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 174 bits (444), Expect = 1e-55
Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 4/144 (2%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
+ TVG G IK +WDTAGQE+ + YY + GA+L +D+TSR +
Sbjct: 40 YNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRIT 99
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
+++ W+ E + + P+ + K+D+ +++S+ + +FE S
Sbjct: 100 CQNLARWVKEFQAVVGNEAPI-VVCANKIDIKNR---QKISKKLVMEVLKGKNYEYFEIS 155
Query: 132 SRSGFQVENAFTAVTQEIYNRVQS 155
+++ F + + R
Sbjct: 156 AKTAHNFGLPFLHLARIFTGRPDL 179
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 166 bits (422), Expect = 2e-52
Identities = 34/143 (23%), Positives = 71/143 (49%), Gaps = 8/143 (5%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
T+GV+ + + IK +WDTAGQE+F + YY + A++++D+TSR +
Sbjct: 44 YVATLGVEVHPLVFHT-NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVT 102
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
++++P W + R E L G K+D+ +A++ F + ++ +++ S
Sbjct: 103 YKNVPNWHRDLVRVCE--NIPIVLCGNKVDI-----KDRKVKAKSIVFHRKKNLQYYDIS 155
Query: 132 SRSGFQVENAFTAVTQEIYNRVQ 154
++S + E F + +++
Sbjct: 156 AKSNYNFEKPFLWLARKLIGDPN 178
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 162 bits (412), Expect = 1e-51
Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 2/141 (1%)
Query: 12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
+PT+G F + VT+ + +K ++WDTAGQERF S+ YYRN+ AL+VYD+T S
Sbjct: 32 KEPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQS 90
Query: 72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
F W+ E + ALVG K+D LQ G R+V+ E + A + +L FETS
Sbjct: 91 FIKARHWVKELHEQASKD-IIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETS 149
Query: 132 SRSGFQVENAFTAVTQEIYNR 152
+++G V + F + ++I +
Sbjct: 150 AKTGENVNDVFLGIGEKIPLK 170
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 160 bits (407), Expect = 8e-51
Identities = 34/146 (23%), Positives = 55/146 (37%), Gaps = 5/146 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKS-YYRNSVGALLVYDI 66
+ D + R + + D + L ++D Q + + L+V+ +
Sbjct: 27 GDHAHEMENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSV 85
Query: 67 TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126
T R SF +P ++ + H LVG K DL +S REVS E + A
Sbjct: 86 TDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS---REVSLEEGRHLAGTLSCK 142
Query: 127 HFETSSRSGFQVENAFTAVTQEIYNR 152
H ETS+ F ++I R
Sbjct: 143 HIETSAALHHNTRELFEGAVRQIRLR 168
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 159 bits (404), Expect = 6e-50
Identities = 35/149 (23%), Positives = 56/149 (37%), Gaps = 5/149 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRS-ITKSYYRNSVGALLVYDI 66
+P D + R + + D + L ++D Q + + L+V+ +
Sbjct: 48 GDSAHEPENPEDTYERRIMV-DKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSV 106
Query: 67 TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126
T R SF +P ++ + H LVG K DL +S REVS E + A
Sbjct: 107 TDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS---REVSLEEGRHLAGTLSCK 163
Query: 127 HFETSSRSGFQVENAFTAVTQEIYNRVQS 155
H ETS+ F ++I R
Sbjct: 164 HIETSAALHHNTRELFEGAVRQIRLRRGR 192
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 151 bits (385), Expect = 2e-47
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 5/140 (3%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ D + ++ ++ DG +L + DTAGQE F ++ + Y R G LLV+ I R SF
Sbjct: 39 DPTIE-DSYTKICSV-DGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSF 96
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
+ + R + LVG K DL R+V +EA AF + + + +FE S+
Sbjct: 97 NEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ---RQVPRSEASAFGASHHVAYFEASA 153
Query: 133 RSGFQVENAFTAVTQEIYNR 152
+ V+ AF + + +
Sbjct: 154 KLRLNVDEAFEQLVRAVRKY 173
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 151 bits (383), Expect = 4e-47
Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 5/140 (3%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
+PT D + + V + DG +++ + DTAGQE + +I +Y+R+ G L V+ IT SF
Sbjct: 34 EPTKA-DSYRKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESF 91
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
+ + R E F LVG K DL R+VS EAK A Q ++ + ETS+
Sbjct: 92 AATADFREQILRVKEDENVPFLLVGNKSDLEDK---RQVSVEEAKNRADQWNVNYVETSA 148
Query: 133 RSGFQVENAFTAVTQEIYNR 152
++ V+ F + +EI R
Sbjct: 149 KTRANVDKVFFDLMREIRAR 168
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 150 bits (382), Expect = 6e-47
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 5/140 (3%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
G + R + + DG L ++D Q+ R + ++VY +T + SF
Sbjct: 31 AEAAG-HTYDRSIVV-DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSF 88
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E ++ +R + LVG K DL++S REVS E +A A D ETS+
Sbjct: 89 EKASELRVQLRRARQTDDVPIILVGNKSDLVRS---REVSVDEGRACAVVFDCKFIETSA 145
Query: 133 RSGFQVENAFTAVTQEIYNR 152
V+ F V ++I R
Sbjct: 146 ALHHNVQALFEGVVRQIRLR 165
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 150 bits (380), Expect = 2e-46
Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
+PT + R + DG +++ + DTAGQE + +I +Y+R+ G L V+ IT SF
Sbjct: 48 EPTKADSY--RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESF 105
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
+ + R E F LVG K DL R+VS EAK A Q ++ + ETS+
Sbjct: 106 AATADFREQILRVKEDENVPFLLVGNKSDLEDK---RQVSVEEAKNRAEQWNVNYVETSA 162
Query: 133 RSGFQVENAFTAVTQEIYNRVQS 155
++ V+ F + +EI R
Sbjct: 163 KTRANVDKVFFDLMREIRARKME 185
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 150 bits (380), Expect = 4e-46
Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
+PT + R + DG +++ + DTAGQE + +I +Y+R+ G L V+ IT SF
Sbjct: 44 EPTKADSY--RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESF 101
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
+ + R E F LVG K DL R+VS EAK A Q ++ + ETS+
Sbjct: 102 AATADFREQILRVKEDENVPFLLVGNKSDLEDK---RQVSVEEAKNRAEQWNVNYVETSA 158
Query: 133 RSGFQVENAFTAVTQEIYNRVQS 155
++ V+ F + +EI R
Sbjct: 159 KTRANVDKVFFDLMREIRARKME 181
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 147 bits (374), Expect = 2e-45
Identities = 43/140 (30%), Positives = 56/140 (40%), Gaps = 5/140 (3%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPTV + + L L DTAGQ+ + + S+ G +LVY +TS SF
Sbjct: 54 DPTVENTY--SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSF 111
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
+ I + R LVG K DL REV E K A E+S+
Sbjct: 112 QVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE---REVQAVEGKKLAESWGATFMESSA 168
Query: 133 RSGFQVENAFTAVTQEIYNR 152
R + FT V QEI
Sbjct: 169 RENQLTQGIFTKVIQEIARV 188
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 146 bits (371), Expect = 3e-45
Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + R + DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 33 DPTIEDSY--RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I + ETS+
Sbjct: 91 EDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA----RTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
++ VE+AF + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 146 bits (371), Expect = 3e-45
Identities = 30/149 (20%), Positives = 52/149 (34%), Gaps = 10/149 (6%)
Query: 11 ISDPTVGVDFFARLVTMRD--GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS 68
+ TVG+D + +RD + L +WD AG+E F S + L VYD++
Sbjct: 32 MQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSK 91
Query: 69 RAS-FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-- 125
+ + + W+ K LVG LD+ + K ++
Sbjct: 92 GQAEVDAMKPWLFNIKARASS--SPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPA 149
Query: 126 ---LHFETSSRSGFQVENAFTAVTQEIYN 151
HF ++ + + E N
Sbjct: 150 IRDYHFVNATEESDALAKLRKTIINESLN 178
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 146 bits (370), Expect = 4e-45
Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 7/142 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSIT--KSYYRNSVGALLVYDITSRA 70
+ G D + R +T+ DG L + DT E+ +S + ++VY I R
Sbjct: 34 EQL-GEDVYERTLTV-DGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRG 91
Query: 71 SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
SFE ++ +R + LVG K DL + REVS E +A A D ET
Sbjct: 92 SFESASELRIQLRRTHQADHVPIILVGNKADLARC---REVSVEEGRACAVVFDCKFIET 148
Query: 131 SSRSGFQVENAFTAVTQEIYNR 152
S+ V F V +++ R
Sbjct: 149 SATLQHNVAELFEGVVRQLRLR 170
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 146 bits (370), Expect = 5e-45
Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 6/141 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ D + + + D L + DTAGQE F ++ + Y R G L+VY +T +ASF
Sbjct: 48 DPTIE-DSYLKHTEI-DNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASF 105
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
EH+ + R + LV K+DL+ R+V+ + K A++ +I + ETS+
Sbjct: 106 EHVDRFHQLILRVKDRESFPMILVANKVDLMHL---RKVTRDQGKEMATKYNIPYIETSA 162
Query: 133 RSG-FQVENAFTAVTQEIYNR 152
+ V+ F + + I +
Sbjct: 163 KDPPLNVDKTFHDLVRVIRQQ 183
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 145 bits (369), Expect = 7e-45
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 5/143 (3%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ F + +G LQL DTAGQ+ + ++Y + G +LVY +TS SF
Sbjct: 36 DPTIENTF--TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSF 93
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I V + + + LVG K DL R +S E KA A + E+S+
Sbjct: 94 EVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME---RVISYEEGKALAESWNAAFLESSA 150
Query: 133 RSGFQVENAFTAVTQEIYNRVQS 155
+ + F + E +
Sbjct: 151 KENQTAVDVFRRIILEAEKMDGA 173
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 144 bits (366), Expect = 1e-44
Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 5/137 (3%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ DF+ + + + D + L++ DTAG E+F S+ Y +N G +LVY + ++ SF
Sbjct: 33 DPTIE-DFYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
+ I + R + LVG K+DL REVS +E +A A + ETS+
Sbjct: 91 QDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE---REVSSSEGRALAEEWGCPFMETSA 147
Query: 133 RSGFQVENAFTAVTQEI 149
+S V+ F + +++
Sbjct: 148 KSKTMVDELFAEIVRQM 164
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 143 bits (364), Expect = 5e-44
Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 6/140 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + R + DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 51 DPTIEDSY--RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSF 108
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
I ++ + KR + LVG K DL R V +A A I ETS+
Sbjct: 109 ADINLYREQIKRVKDSDDVPMVLVGNKCDLPT----RTVDTKQAHELAKSYGIPFIETSA 164
Query: 133 RSGFQVENAFTAVTQEIYNR 152
++ VE+AF + +EI
Sbjct: 165 KTRQGVEDAFYTLVREIRQY 184
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 142 bits (361), Expect = 9e-44
Identities = 41/144 (28%), Positives = 58/144 (40%), Gaps = 6/144 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
PTV + R V D + LQ+ DT G +F ++ + +LVY ITSR S
Sbjct: 33 IPTVEDTY--RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSL 90
Query: 73 EHIPVWMMEAKRHIEPHRPV-FALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
E + + + LVG K D S REV +EA+A A ETS
Sbjct: 91 EELKPIYEQICEIKGDVESIPIMLVGNKCDESPS---REVQSSEAEALARTWKCAFMETS 147
Query: 132 SRSGFQVENAFTAVTQEIYNRVQS 155
++ V+ F + R S
Sbjct: 148 AKLNHNVKELFQELLNLEKRRTVS 171
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 143 bits (362), Expect = 1e-43
Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 6/143 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + R + DG L + DTAGQE + ++ Y R G L V+ I + SF
Sbjct: 34 DPTIEDSY--RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 91
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E I + + KR + LVG K DL R V +A+ A I ETS+
Sbjct: 92 EDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS----RTVDTKQAQDLARSYGIPFIETSA 147
Query: 133 RSGFQVENAFTAVTQEIYNRVQS 155
++ V++AF + +EI +
Sbjct: 148 KTRQGVDDAFYTLVREIRKHKEK 170
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 140 bits (356), Expect = 1e-42
Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 7/144 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
PT+ + R V D + LQ+ DT G +F ++ + +LV+ +TS+ S
Sbjct: 38 IPTIEDTY--RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSL 95
Query: 73 EHIPVWMMEAKRHIEPHRPV-FALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
E + + + LVG K D Q REV EA+A A + ETS
Sbjct: 96 EELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ----REVDTREAQAVAQEWKCAFMETS 151
Query: 132 SRSGFQVENAFTAVTQEIYNRVQS 155
++ + V+ F + R S
Sbjct: 152 AKMNYNVKELFQELLTLETRRNMS 175
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 138 bits (350), Expect = 1e-41
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 8/147 (5%)
Query: 13 DPTVGVDFFARLVTM--RDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA 70
+ G D + R + + I L +W+ G+ + + + L+VY IT RA
Sbjct: 69 EVL-GEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRA 125
Query: 71 SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
SFE ++ +R + LVG K DL++ REVS +E +A A D ET
Sbjct: 126 SFEKASELRIQLRRARQTEDIPIILVGNKSDLVRC---REVSVSEGRACAVVFDCKFIET 182
Query: 131 SSRSGFQVENAFTAVTQEIYNRVQSGD 157
S+ V+ F + +++ R S +
Sbjct: 183 SAAVQHNVKELFEGIVRQVRLRRDSKE 209
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 137 bits (347), Expect = 1e-41
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 6/138 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + R D + L++ DTAG E+F ++ Y +N G LVY IT++++F
Sbjct: 33 DPTIEDSY--RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTF 90
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDILHFETS 131
+ + R + LVG K DL R V + + + A Q + E+S
Sbjct: 91 NDLQDLREQILRVKDTEDVPMILVGNKCDLEDE---RVVGKEQGQNLARQWCNCAFLESS 147
Query: 132 SRSGFQVENAFTAVTQEI 149
++S V F + ++I
Sbjct: 148 AKSKINVNEIFYDLVRQI 165
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 135 bits (342), Expect = 1e-40
Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 7/141 (4%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DPT+ + R D + +++ DTAGQE + + R G +LVYDIT R SF
Sbjct: 58 DPTLESTY--RHQATIDDEVVSMEILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSF 114
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
E + +P LVG K DL S R+VS E + A++ +E S+
Sbjct: 115 EEVLPLKNILDEIKKPKNVTLILVGNKADLDHS---RQVSTEEGEKLATELACAFYECSA 171
Query: 133 RSGF-QVENAFTAVTQEIYNR 152
+G + F + +E+ R
Sbjct: 172 CTGEGNITEIFYELCREVRRR 192
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 132 bits (333), Expect = 2e-39
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 8/145 (5%)
Query: 13 DPTVGVDFFARLVTM--RDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA 70
+ G D + R + + I L +W+ G+ + + + L+VY IT RA
Sbjct: 38 EVL-GEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRA 94
Query: 71 SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
SFE ++ +R + LVG K DL++ REVS +E +A A D ET
Sbjct: 95 SFEKASELRIQLRRARQTEDIPIILVGNKSDLVR---XREVSVSEGRAXAVVFDXKFIET 151
Query: 131 SSRSGFQVENAFTAVTQEIYNRVQS 155
S+ V+ F + +++ R S
Sbjct: 152 SAAVQHNVKELFEGIVRQVRLRRDS 176
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 130 bits (329), Expect = 1e-38
Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 10/146 (6%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
Y+Q P F + + + DG L + D G + + + V+ +
Sbjct: 45 YVQEESPEG--GRFKKEIVV-DGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLE 96
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDIL 126
SF+ + + + LVG + + + PR + ++ A+ ++
Sbjct: 97 DEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDA-ISAANPRVIDDSRARKLSTDLKRCT 155
Query: 127 HFETSSRSGFQVENAFTAVTQEIYNR 152
++ET + G VE F V Q++
Sbjct: 156 YYETCATYGLNVERVFQDVAQKVVAL 181
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 129 bits (326), Expect = 2e-38
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 9/140 (6%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
DP + D ++ T+ D + L++ DTA + R+ + Y + L+VY + SR SF
Sbjct: 51 DPNLE-DTYSSEETV-DHQPVHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSF 107
Query: 73 EHIPVWMMEAKRHIE--PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
+ ++ H + L+G KLD+ Q R+V++AE A A + L FE
Sbjct: 108 DSSSSYLELLALHAKETQRSIPALLLGNKLDMAQY---RQVTKAEGVALAGRFGCLFFEV 164
Query: 131 SSRSGFQ-VENAFTAVTQEI 149
S+ F+ V++ F +E
Sbjct: 165 SACLDFEHVQHVFHEAVREA 184
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 121 bits (306), Expect = 2e-35
Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 15/145 (10%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
+ T + + + + + DG + + + AG + + + + V+ + SF
Sbjct: 36 EKTES-EQYKKEMLV-DGQTHLVLIREEAGAPDAK-----FSGWADAVIFVFSLEDENSF 88
Query: 73 EHIPVWM--MEAKRHIEPHRPVFALVG--CKLDLLQSGVPREVSEAEAKAF-ASQNDILH 127
+ + + + R ALVG ++ PR V +A A+A A +
Sbjct: 89 QAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASS---PRVVGDARARALXADMKRCSY 145
Query: 128 FETSSRSGFQVENAFTAVTQEIYNR 152
+ET + G V+ F V Q++
Sbjct: 146 YETXATYGLNVDRVFQEVAQKVVTL 170
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 124 bits (313), Expect = 8e-34
Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 15/151 (9%)
Query: 8 YIQISDPTVGVDFFARLVTM-------RDGARIKLQLWDTAGQERFRSITKSYYRNSVGA 60
+ T G++ + + WD GQE + + + S
Sbjct: 66 FDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVY 125
Query: 61 LLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFA 120
+L+ D + + W+ +++ PV +V K+D S + + +
Sbjct: 126 MLLLDSR---TDSNKHYWLRHIEKYG-GKSPVI-VVMNKIDENPS---YNIEQKKINERF 177
Query: 121 SQNDILHFETSSRSGFQVENAFTAVTQEIYN 151
+ S ++G VE+ ++ + +
Sbjct: 178 PAIENRFHRISCKNGDGVESIAKSLKSAVLH 208
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 108 bits (273), Expect = 3e-30
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV +F + L LWDTAGQE + + Y +S LL + + +R SF+
Sbjct: 54 PTVFENFSHVM--KYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFD 111
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDILHFETS 131
+I W E K +I LVG K+DL + G +V++ E + + + E S
Sbjct: 112 NISTKWEPEIKHYI-DTAKTV-LVGLKVDLRKDG-SDDVTKQEGDDLCQKLGCVAYIEAS 168
Query: 132 SRSGFQVENAFTAVTQEIYN 151
S + + F I++
Sbjct: 169 SVAKIGLNEVFEKSVDCIFS 188
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 102 bits (256), Expect = 1e-27
Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 15/149 (10%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV + L G + L +WDTAGQ+ + + +Y ++ LL +D+TS SF+
Sbjct: 65 PTVFERYMVNL--QVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFD 122
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL---------LQSGVPREVSEAEAKAFASQ- 122
+I W E P+ +VGCK DL L+ V+ + A
Sbjct: 123 NIFNRWYPEVNHFC-KKVPII-VVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSV 180
Query: 123 NDILHFETSSRSGFQVENAFTAVTQEIYN 151
+ + E S+R V F + +
Sbjct: 181 GAVAYLECSARLHDNVHAVFQEAAEVALS 209
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 100 bits (251), Expect = 3e-27
Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 13/145 (8%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV +F A + +GA + L LWDTAGQE + + YR + +L + + S+AS+E
Sbjct: 39 PTVFDNFSAN--VVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 96
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL-------LQSGVPREVSEAEAKAFASQNDI 125
++ W+ E K + P P+ LVG KLDL + ++ + +
Sbjct: 97 NVSKKWIPELKHYA-PGVPIV-LVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGA 154
Query: 126 LHF-ETSSRSGFQVENAFTAVTQEI 149
+ E SS+S V+ F A + +
Sbjct: 155 PAYIECSSKSQENVKGVFDAAIRVV 179
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 99.4 bits (248), Expect = 2e-26
Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 15/156 (9%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ ++ PTV ++ A + DG +++L LWDTAGQE + + Y ++ L+ + +
Sbjct: 50 FPEVYVPTVFENYVADI--EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVD 107
Query: 68 SRASFEHIPV-WMMEAKRHIEPHRPVFALVGCKLDL---------LQSGVPREVSEAEAK 117
S S E+IP W+ E K P+ P+ LV K DL L V + +
Sbjct: 108 SPDSLENIPEKWVPEVKHFC-PNVPII-LVANKKDLRSDEHVRTELARMKQEPVRTDDGR 165
Query: 118 AFASQ-NDILHFETSSRSGFQVENAFTAVTQEIYNR 152
A A + + E S+++ V F T+ +
Sbjct: 166 AMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 99.0 bits (247), Expect = 3e-26
Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 16/160 (10%)
Query: 4 LLYLYIQIS-----DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
+L Y PTV D F+ V + DG + L LWDTAGQE + + YR +
Sbjct: 25 MLICYTSNKFPTDYIPTV-FDNFSANVAV-DGQIVNLGLWDTAGQEDYSRLRPLSYRGAD 82
Query: 59 GALLVYDITSRASFEHIPV-WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPRE-----VS 112
+L + + S+AS+E++ WM E +R P+ P+ LVG KLDL ++
Sbjct: 83 IFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIV-LVGTKLDLRDDKGYLADHTNVIT 140
Query: 113 EAEAKAFASQ-NDILHFETSSRSGFQVENAFTAVTQEIYN 151
+ + Q + E SS++ V+ F + +
Sbjct: 141 STQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 180
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 97.5 bits (243), Expect = 8e-26
Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 15/145 (10%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV + + + + DG +++L LWDTAGQE + + Y ++ L+ + I S S E
Sbjct: 56 PTVF-ENYIADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 113
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPRE---------VSEAEAKAFASQ- 122
+IP W E K P+ P+ LVG K DL Q R V E + A++
Sbjct: 114 NIPEKWTPEVKHFC-PNVPII-LVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRI 171
Query: 123 NDILHFETSSRSGFQVENAFTAVTQ 147
+ + E S+++ V F T+
Sbjct: 172 SAFGYLECSAKTKEGVREVFEMATR 196
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 97.5 bits (243), Expect = 1e-25
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 15/145 (10%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV D ++ V + DG + L LWDTAGQE + + Y + L+ + + S ASFE
Sbjct: 61 PTV-FDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 118
Query: 74 HI-PVWMMEAKRHIEPHRPVFALVGCKLDL---------LQSGVPREVSEAEAKAFASQ- 122
++ W E + H P+ P+ LVG KLDL L+ ++ + A A +
Sbjct: 119 NVRAKWYPEVRHHC-PNTPII-LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 176
Query: 123 NDILHFETSSRSGFQVENAFTAVTQ 147
+ + E S+ + ++ F +
Sbjct: 177 GAVKYLECSALTQRGLKTVFDEAIR 201
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 95.2 bits (237), Expect = 5e-25
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 18/159 (11%)
Query: 4 LLYLYIQISDPTVGV----DFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVG 59
LL Y + P + D ++ V + DG + L LWDTAGQE + + Y +
Sbjct: 21 LLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 79
Query: 60 ALLVYDITSRASFEHI-PVWMMEAKRHIEPHRPVFALVGCKLDL---------LQSGVPR 109
+L+ + + S ASFE++ W E + H P+ P+ LVG KLDL L+
Sbjct: 80 SLICFSLVSPASFENVRAKWYPEVRHHC-PNTPII-LVGTKLDLRDDKDTIEKLKEKKLT 137
Query: 110 EVSEAEAKAFASQ-NDILHFETSSRSGFQVENAFTAVTQ 147
++ + A A + + + E S+ + ++ F +
Sbjct: 138 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 176
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 94.0 bits (234), Expect = 1e-24
Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 16/151 (10%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A D RI+L LWDT+G + ++ Y +S L+ +DI+ + +
Sbjct: 38 PTVFENYTAS--FEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLD 95
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL---------LQSGVPREVSEAEAKAFASQ- 122
+ W E + P+ + LVGCK DL L + VS + A Q
Sbjct: 96 SVLKKWKGEIQEFC-PNTKML-LVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 153
Query: 123 NDILHFETSSRSG-FQVENAFTAVTQEIYNR 152
+ E S+ V + F T N+
Sbjct: 154 GAATYIECSALQSENSVRDIFHVATLACVNK 184
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 91.7 bits (228), Expect = 2e-23
Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 16/151 (10%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTV ++ A D RI+L LWDT+G + ++ Y +S L+ +DI+ + +
Sbjct: 59 PTVFENYTAS--FEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLD 116
Query: 74 HIPV-WMMEAKRHIEPHRPVFALVGCKLDL---------LQSGVPREVSEAEAKAFASQ- 122
+ W E + P+ + LVGCK DL L + VS + A Q
Sbjct: 117 SVLKKWKGEIQEFC-PNTKML-LVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 174
Query: 123 NDILHFETSSRSG-FQVENAFTAVTQEIYNR 152
+ E S+ V + F T N+
Sbjct: 175 GAATYIECSALQSENSVRDIFHVATLACVNK 205
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 91.1 bits (226), Expect = 3e-23
Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 16/157 (10%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
Y + PTV ++ A + R++L LWDT+G + ++ Y +S LL +DI+
Sbjct: 52 YPETYVPTVFENYTAC--LETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDIS 109
Query: 68 SRASFEHIP-VWMMEAKRHIEPHRPVFALVGCKLDL---------LQSGVPREVSEAEAK 117
+ + W E + P V L+GCK DL L +S +
Sbjct: 110 RPETVDSALKKWRTEILDYC-PSTRVL-LIGCKTDLRTDLSTLMELSHQKQAPISYEQGC 167
Query: 118 AFASQ-NDILHFETSSRSG-FQVENAFTAVTQEIYNR 152
A A Q ++ E S+ + + + F + N+
Sbjct: 168 AIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNK 204
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 89.8 bits (223), Expect = 7e-23
Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 15/149 (10%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PT D F+ +V++ DG ++LQL DTAGQ+ F + Y N+ LL + + S +SF+
Sbjct: 51 PTA-FDNFSAVVSV-DGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQ 108
Query: 74 HI-PVWMMEAKRHIEPHRPVFALVGCKLDL---------LQSGVPREVSEAEAKAFASQ- 122
++ W+ E + H P P+ LVG + DL L + V E AK A +
Sbjct: 109 NVSEKWVPEIRCHC-PKAPII-LVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI 166
Query: 123 NDILHFETSSRSGFQVENAFTAVTQEIYN 151
+ E S+ + ++ F A
Sbjct: 167 KAASYIECSALTQKNLKEVFDAAIVAGIQ 195
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 87.6 bits (217), Expect = 5e-22
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 20/155 (12%)
Query: 4 LLYLYIQIS-----DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
LL Y + PTV D +A VT+ G + L L+DTAGQE + + Y +
Sbjct: 34 LLMSYANDAFPEEYVPTV-FDHYAVSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTD 91
Query: 59 GALLVYDITSRASFEHI-PVWMMEAKRHIEPHRPVFALVGCKLDL---------LQSGVP 108
L+ + + + ASF+++ W+ E K + P+ P L+G ++DL L
Sbjct: 92 VFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFL-LIGTQIDLRDDPKTLARLNDMKE 149
Query: 109 REVSEAEAKAFASQ-NDILHFETSSRSGFQVENAF 142
+ + + + A + + E S+ + ++ F
Sbjct: 150 KPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 84.7 bits (209), Expect = 2e-20
Identities = 30/191 (15%), Positives = 56/191 (29%), Gaps = 54/191 (28%)
Query: 9 IQISDPTVGVDFF----ARLVTMRDGARIKLQLW-------DTAGQERFRSITKSYYRNS 57
V D F ++ D K+ + D Q + + Y + +
Sbjct: 67 SDFGGRVVNNDHFLYWGEVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRA 126
Query: 58 V-------------------------------------GALLVYDITS--RASFEHIPVW 78
G LL D++ +F+ +
Sbjct: 127 AATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKF 186
Query: 79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQV 138
+ + + +V K D R + +A A + +N + ETS+RS V
Sbjct: 187 VSNLYNQLAKTKKPIVVVLTKCDEGVE---RYIRDAHTFALSKKN-LQVVETSARSNVNV 242
Query: 139 ENAFTAVTQEI 149
+ AF+ + Q I
Sbjct: 243 DLAFSTLVQLI 253
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 79.8 bits (197), Expect = 5e-19
Identities = 24/149 (16%), Positives = 43/149 (28%), Gaps = 10/149 (6%)
Query: 13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
+ T+ DF + G + + L+ GQ + + K R G + V D
Sbjct: 54 ERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLR 113
Query: 73 EHIPVW---MMEAKRHIEPHRPVFALVGC-KLDLLQSGVPREVSEAE-AKAFASQNDILH 127
+ + V ++ K DL P + +
Sbjct: 114 ANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDL-----PDALPVEMVRAVVDPEGKFPV 168
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSG 156
E + G V V++ + RV G
Sbjct: 169 LEAVATEGKGVFETLKEVSRLVLARVAGG 197
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 77.7 bits (191), Expect = 2e-17
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV-WMMEAKRHIE 87
DG + L LWDTAG E + + Y + L+ + + S ASF H+ W E + H
Sbjct: 199 DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC- 257
Query: 88 PHRPVFALVGCKLDL---------LQSGVPREVSEAEAKAFASQ-NDILHFETSSRSGFQ 137
P+ P+ LVG KLDL L+ ++ + A A + + + E S+ +
Sbjct: 258 PNTPII-LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 316
Query: 138 VENAFTAVTQ 147
++ F +
Sbjct: 317 LKTVFDEAIR 326
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 51.9 bits (124), Expect = 1e-08
Identities = 25/149 (16%), Positives = 54/149 (36%), Gaps = 20/149 (13%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSIT---KSYYRNSVGALLVYDITSRA 70
T + + + + + Q+WD GQ F T + +R + + V D
Sbjct: 54 STNKIY----KDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDY 109
Query: 71 --SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL--------QSGVPREVSEAEAKAFA 120
+ + + + +A + P + K+D L Q + + ++ A A
Sbjct: 110 MEALTRLHITVSKAYKV-NPDMNFEVFIH-KVDGLSDDHKIETQRDIHQRANDDLADAGL 167
Query: 121 SQNDILHFETSSRSGFQVENAFTAVTQEI 149
+ + + TS + AF+ V Q++
Sbjct: 168 EKLHLSFYLTSIYDH-SIFEAFSKVVQKL 195
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 51.1 bits (122), Expect = 4e-08
Identities = 26/153 (16%), Positives = 54/153 (35%), Gaps = 17/153 (11%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERF-----RSITKSYYRNSVGALLVYDITS 68
T+ V+ +R + L LWD GQ+ F ++ + V+D+ S
Sbjct: 37 ATIDVEH----SHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVES 92
Query: 69 RASFEHIPVW--MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV-----SEAEAKAFAS 121
+ I ++ ++ R P +F L+ K+DL+Q E+ +
Sbjct: 93 TEVLKDIEIFAKALKQLRKYSPDAKIFVLLH-KMDLVQLDKREELFQIMMKNLSETSSEF 151
Query: 122 QNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154
L +S + A++ + + +
Sbjct: 152 GFPNLIGFPTSIWDESLYKAWSQIVCSLIPNMS 184
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 46.1 bits (110), Expect = 1e-06
Identities = 26/139 (18%), Positives = 54/139 (38%), Gaps = 5/139 (3%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PT+G F V ++ I +WD GQ++ R + + Y++N+ G + V D R +
Sbjct: 59 PTIG--FNVETVEYKN---ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQ 113
Query: 74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
+ + + E V + K D+ + E+++ T +
Sbjct: 114 ESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCAT 173
Query: 134 SGFQVENAFTAVTQEIYNR 152
G + + ++ E+ R
Sbjct: 174 QGTGLYDGLDWLSHELSKR 192
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 45.6 bits (109), Expect = 1e-06
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
Query: 3 TLLY-----LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNS 57
T + + + PTVG F R +T + ++LWD GQ RFRS+ + Y R
Sbjct: 37 TFVNVIASGQFNEDMIPTVG--FNMRKITKG---NVTIKLWDIGGQPRFRSMWERYCRGV 91
Query: 58 VGALLVYDITSRASFE 73
+ + D + E
Sbjct: 92 SAIVYMVDAADQEKIE 107
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 45.7 bits (109), Expect = 1e-06
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTVG + ++ I ++WD GQ R + Y+ ++ + V D T R
Sbjct: 52 PTVG--VNLETLQYKN---ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMG 106
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 45.3 bits (108), Expect = 2e-06
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PT G F + V + KL +WD GQ + R +SY+ N+ + V D R FE
Sbjct: 46 PTQG--FNIKSVQSQG---FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFE 100
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 45.3 bits (108), Expect = 2e-06
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PT+G F + + R KL +WD GQ+ RS ++Y+ ++ G + V D R +
Sbjct: 48 PTLG--FNIKTLEHRG---FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQ 102
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 45.3 bits (108), Expect = 2e-06
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 3 TLLY----LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
T+LY + + PT+G F ++ ++ +KL +WD GQ R + YY ++
Sbjct: 33 TILYRLQIGEVVTTKPTIG--FNVETLSYKN---LKLNVWDLGGQTSIRPYWRCYYADTA 87
Query: 59 GALLVYDITSRASFE 73
+ V D T +
Sbjct: 88 AVIFVVDSTDKDRMS 102
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 45.3 bits (108), Expect = 2e-06
Identities = 29/164 (17%), Positives = 57/164 (34%), Gaps = 23/164 (14%)
Query: 3 TLLY----LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
T+LY + + PT+G + + + + +WD GQE RS +YY N+
Sbjct: 31 TILYQFSMNEVVHTSPTIG--SNVEEIVINN---TRFLMWDIGGQESLRSSWNTYYTNTE 85
Query: 59 GALLVYDITSRASFEHIPVWMMEAKRHI------EPHRPVFALVGC-KLDLLQSGVPREV 111
++V D T R + + E R L+ K D+ + E+
Sbjct: 86 FVIVVVDSTDRERIS-------VTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEI 138
Query: 112 SEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQS 155
S+ + + +G + + + R++
Sbjct: 139 SQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLEH 182
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 44.9 bits (107), Expect = 2e-06
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PT+G F V ++ I +WD GQ++ R + + Y++N+ G + V D R
Sbjct: 30 PTIG--FNVETVEYKN---ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVN 84
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 44.9 bits (107), Expect = 2e-06
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 3 TLLYL-----YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNS 57
T+LY + PT+G F VT ++ +K Q+WD G R + YY N+
Sbjct: 22 TILYRLQVGEVVTTI-PTIG--FNVETVTYKN---LKFQVWDLGGLTSIRPYWRCYYSNT 75
Query: 58 VGALLVYDITSRASFE 73
+ V D R
Sbjct: 76 DAVIYVVDSCDRDRIG 91
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 44.6 bits (106), Expect = 3e-06
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 13/78 (16%)
Query: 3 TLLY-------LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYR 55
T++ I PT+G F + ++D +GQ R+R++ + YY+
Sbjct: 36 TIINKLKPSNAQSQNIL-PTIG--FSIEKFKSSS---LSFTVFDMSGQGRYRNLWEHYYK 89
Query: 56 NSVGALLVYDITSRASFE 73
+ V D + R
Sbjct: 90 EGQAIIFVIDSSDRLRMV 107
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 43.8 bits (104), Expect = 6e-06
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 9/75 (12%)
Query: 3 TLLY----LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
T+LY + + PT+G + + + + +WD GQE RS +YY N+
Sbjct: 36 TILYQFSMNEVVHTSPTIG--SNVEEIVINN---TRFLMWDIGGQESLRSSWNTYYTNTE 90
Query: 59 GALLVYDITSRASFE 73
++V D T R
Sbjct: 91 FVIVVVDSTDRERIS 105
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 42.9 bits (102), Expect = 1e-05
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 11/76 (14%)
Query: 3 TLLYL-----YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNS 57
TLL++ + PT + + + IK +D G + R + K Y+
Sbjct: 38 TLLHMLKNDRLATLQ-PTWH--PTSEELAIG---NIKFTTFDLGGHIQARRLWKDYFPEV 91
Query: 58 VGALLVYDITSRASFE 73
G + + D F+
Sbjct: 92 NGIVFLVDAADPERFD 107
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 42.3 bits (100), Expect = 2e-05
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 9/75 (12%)
Query: 3 TLLYL----YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
TLL++ + PT+ + +T+ + +D G + R + K+Y
Sbjct: 40 TLLHMLKDDRLGQHVPTLH--PTSEELTIA---GMTFTTFDLGGHIQARRVWKNYLPAIN 94
Query: 59 GALLVYDITSRASFE 73
G + + D
Sbjct: 95 GIVFLVDCADHERLL 109
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 41.8 bits (98), Expect = 5e-05
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PT+G F V ++ I +WD GQ++ R + + Y++N+ G + V D R
Sbjct: 195 PTIG--FNVETVEYKN---ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVN 249
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 41.4 bits (97), Expect = 9e-05
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 29/155 (18%)
Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
PTVG F VT ++ +K +WD GQ++ R + + YY + G + V D R
Sbjct: 352 PTVG--FNVETVTYKN---VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD--- 403
Query: 74 HIPVWMMEAKRHIEPHRP------------VFALVGCKLDLLQSGVPREVSEAEAKAFAS 121
+ EA++ E HR +FA K DL + P E+ E
Sbjct: 404 ----RIDEARQ--ELHRIINDREMRDAIILIFA---NKQDLPDAMKPHEIQEKLGLTRIR 454
Query: 122 QNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG 156
+ + + SG + T +T +++ +
Sbjct: 455 DRNWYVQPSCATSGDGLYEGLTWLTSNYKSKLAAA 489
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 40.1 bits (94), Expect = 2e-04
Identities = 16/126 (12%), Positives = 40/126 (31%), Gaps = 22/126 (17%)
Query: 3 TLLYL-----YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFR-SITKSYYRN 56
L Y ++ + + + + L L D G E R + + +
Sbjct: 22 LLFVRLLTGQYRDTQ-TSIT--DSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSS 78
Query: 57 SVGALLVYDITSR-------ASFEHIPVWMMEAKRHIEPHRPVFALVGC-KLDLLQSGVP 108
+ + V D + A F + ++ ++ + L+ C K D+ +
Sbjct: 79 ARAVVFVVDSAAFQREVKDVAEFLYQ---VLIDSMALKNSPSL--LIACNKQDIAMAKSA 133
Query: 109 REVSEA 114
+ + +
Sbjct: 134 KLIQQQ 139
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 35.9 bits (83), Expect = 0.003
Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 8/90 (8%)
Query: 33 IKLQLWDTAGQERFRSITKSYYRNSVGAL--LVYDITSRASFEHIPV-----WMMEAKRH 85
+ L D G + R Y + + L++ + S + + + +
Sbjct: 91 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITE 150
Query: 86 IEPHRPVFALVGC-KLDLLQSGVPREVSEA 114
+ L+ C K +L + P ++ +A
Sbjct: 151 SSCENGIDILIACNKSELFTARPPSKIKDA 180
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 35.5 bits (82), Expect = 0.005
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 33 IKLQLWDTAGQERFRSITKSYYRNSVGAL--LVYDITS 68
+ L D G + R Y + + L++ + S
Sbjct: 55 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDS 92
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.049
Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 44/117 (37%)
Query: 26 TMRDGARIKLQLWDTAGQERFRSITKSYYRNSVG----------ALLVYDITSRASFEHI 75
T+ DG +++ E S T +R+ G AL + +A+FE +
Sbjct: 1695 TIVDGKLKTEKIFKEIN-EHSTSYT---FRSEKGLLSATQFTQPALTL---MEKAAFEDL 1747
Query: 76 PVWMMEAKRHIEPHRPVFA---LVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129
+ + P FA L G E + A AS D++ E
Sbjct: 1748 ------KSKGLIPADATFAGHSL----------G---EYA-----ALASLADVMSIE 1780
Score = 28.9 bits (64), Expect = 1.4
Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 16/83 (19%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ + + D V+ + I++ ++DT R S+ +V I
Sbjct: 431 LLVPASDLINKDLVKNNVSF-NAKDIQIPVYDTFDGSDLRV-----LSGSISERIVDCII 484
Query: 68 SRASFEHIPV-WMMEAK---RHI 86
PV W + HI
Sbjct: 485 RL------PVKWETTTQFKATHI 501
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 32.3 bits (73), Expect = 0.061
Identities = 7/81 (8%), Positives = 18/81 (22%), Gaps = 4/81 (4%)
Query: 38 WDTAGQERFRSITKSYYRNSVGALLVYDITSR----ASFEHIPVWMMEAKRHIEPHRPVF 93
+ + G + V + + E + M RP+
Sbjct: 107 DQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLL 166
Query: 94 ALVGCKLDLLQSGVPREVSEA 114
L ++ ++
Sbjct: 167 VLSCISQGDVKRMPCFYLAHE 187
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.54
Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 10/65 (15%)
Query: 83 KRHIEPHRPVF-ALVGCKLDLLQSGVPREVSEAEAKAFASQN-DILHFETSSRSGFQVEN 140
K +I + P + LV LD L E S+ D+L + E
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPK--------IEENLICSKYTDLLRIALMAEDEAIFEE 582
Query: 141 AFTAV 145
A V
Sbjct: 583 AHKQV 587
Score = 29.4 bits (65), Expect = 0.77
Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 17/94 (18%)
Query: 9 IQIS----DPTVGVDFFARLVTMRDGARIKLQ----LWDTAGQERFRSITKSYYRNSVGA 60
I+ S +P F RL A I +W + + ++ S
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS--- 415
Query: 61 LLVYDITSRASFEHIPVWMMEAKRHIEP----HR 90
L+ IP +E K +E HR
Sbjct: 416 LVEKQPKESTI--SIPSIYLELKVKLENEYALHR 447
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 1.7
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Query: 43 QE--RFRSITKSYYRNSVGALLVYDITSRASFE 73
Q + ++ K Y +S AL + +A+ E
Sbjct: 20 QALKKLQASLKLYADDSAPALAI-----KATME 47
>2fok_A R.FOKI, FOKI restriction endonuclease; nucleic acid recognition,
DNA-binding protein, type IIS restriction endonuclease;
2.30A {Planomicrobium okeanokoites} SCOP: a.4.5.12
a.4.5.12 a.4.5.12 c.52.1.12 PDB: 1fok_A*
Length = 579
Score = 26.6 bits (58), Expect = 6.2
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 128 FETSSRSGFQVENAFTAVTQEIY-----NRVQSGDYKVEDGWEGIKTGFSRT 174
F+ GF E+ FT++ + I N + ++ + WEG ++R
Sbjct: 178 FDLGKNLGFSGESGFTSLPEGILLDTLANAMPKDKGEIRNNWEGSSDKYARM 229
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP
kinase, aspartokinase fold, pyrimidine nucleotide
synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus
solfataricus} PDB: 2j4k_A* 2j4l_A*
Length = 226
Score = 25.8 bits (57), Expect = 9.2
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 60 ALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFA 94
A LV ++ H+P + E + + V
Sbjct: 76 AYLVMFSLQDLAYMHVPQSLEEFIQDWSHGKVVVT 110
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.397
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,893,194
Number of extensions: 158942
Number of successful extensions: 590
Number of sequences better than 10.0: 1
Number of HSP's gapped: 406
Number of HSP's successfully gapped: 120
Length of query: 193
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 105
Effective length of database: 4,244,745
Effective search space: 445698225
Effective search space used: 445698225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.9 bits)