RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy38
(193 letters)
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 110 bits (275), Expect = 1e-31
Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 6/146 (4%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ T+G+DF + V + ++KLQ+WDTAGQERFR+IT +YYR ++G +LVYDIT
Sbjct: 27 FNPSFITTIGIDFKIKTVDINGK-KVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDIT 85
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
+F +I W H + VG K D+ R V+ + +A A + I
Sbjct: 86 DERTFTNIKQWFKTVNEHANDEAQLLL-VGNKSDM----ETRVVTADQGEALAKELGIPF 140
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRV 153
E+S+++ V F + + I ++
Sbjct: 141 IESSAKNDDNVNEIFFTLAKLIQEKI 166
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 106 bits (265), Expect = 6e-30
Identities = 54/146 (36%), Positives = 81/146 (55%), Gaps = 5/146 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ T+G+DF R + + DG RIKLQ+WDTAGQERFR+IT +YYR ++G +LVYDIT
Sbjct: 31 FNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDIT 89
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
+ SF++I W+ + H L R+VS+ + A I
Sbjct: 90 NEKSFDNIRNWIRNIEEHASADVEKMILGNKC----DVNDKRQVSKERGEKLALDYGIKF 145
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRV 153
ETS+++ VENAF + ++I ++
Sbjct: 146 METSAKANINVENAFFTLARDIKAKM 171
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 99.2 bits (246), Expect = 6e-27
Identities = 55/156 (35%), Positives = 87/156 (55%), Gaps = 12/156 (7%)
Query: 8 YIQISDPTVGVDFFARLVTMR---------DGARIKLQLWDTAGQERFRSITKSYYRNSV 58
+ TVG+DF + V ++ LQLWDTAGQERFRS+T +++R+++
Sbjct: 30 FNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAM 89
Query: 59 GALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKA 118
G LL++D+TS+ SF ++ WM + + + P L+G K DL REV+E +A+
Sbjct: 90 GFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD---QREVNERQARE 146
Query: 119 FASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154
A + I +FETS+ +G VE A + I R++
Sbjct: 147 LADKYGIPYFETSAATGQNVEKAVETLLDLIMKRME 182
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 98.8 bits (245), Expect = 7e-27
Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 5/145 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ T+GVDF + +++ DG + KL +WDTAGQERFR++T SYYR + G +LVYD+T
Sbjct: 32 FDPELAATIGVDFKVKTISV-DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVT 90
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
R +F + W+ E + + + V LVG K REV E FA ++ +L
Sbjct: 91 RRDTFVKLDNWLNELETYCTRNDIVNMLVGNK----IDKENREVDRNEGLKFARKHSMLF 146
Query: 128 FETSSRSGFQVENAFTAVTQEIYNR 152
E S+++ V+ AF + ++I
Sbjct: 147 IEASAKTCDGVQCAFEELVEKIIQT 171
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 98.0 bits (243), Expect = 1e-26
Identities = 48/131 (36%), Positives = 77/131 (58%), Gaps = 4/131 (3%)
Query: 20 FFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWM 79
F V DG ++KLQ+WDTAGQERFRS+T +YYR++ LL+YD+T++ASF++I W+
Sbjct: 43 DFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWL 102
Query: 80 MEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVE 139
E + + + L + V RE + + A + + ETS+++G V+
Sbjct: 103 TEIHEYAQHDVALMLLGNKVDSAHERVVKRE----DGEKLAKEYGLPFMETSAKTGLNVD 158
Query: 140 NAFTAVTQEIY 150
AFTA+ +E+
Sbjct: 159 LAFTAIAKELK 169
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 98.4 bits (244), Expect = 1e-26
Identities = 58/148 (39%), Positives = 79/148 (53%), Gaps = 5/148 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
Y T+GVDF + V + +KLQ+WDTAGQERFR+IT SYYR S G ++VYD+T
Sbjct: 31 YTNDYISTIGVDFKIKTVELDGK-TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVT 89
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
+ SF + +W+ E R+ LVG K DL R V AK FA N +
Sbjct: 90 DQESFNGVKMWLQEIDRYATSTVLKL-LVGNKCDLKD---KRVVEYDVAKEFADANKMPF 145
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQS 155
ETS+ VE+AF + ++I +
Sbjct: 146 LETSALDSTNVEDAFLTMARQIKESMSQ 173
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 91.4 bits (226), Expect = 3e-24
Identities = 54/142 (38%), Positives = 82/142 (57%), Gaps = 5/142 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ T+GVDF + V + +G ++KLQ+WDTAGQERFRSIT+SYYR++ +L YDIT
Sbjct: 30 FPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDIT 88
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
SF +P + ++ + LVG K+DL + REVS+ A+ F+ D+ +
Sbjct: 89 CEESFRCLP-EWLREIEQYASNKVITVLVGNKIDLAE---RREVSQQRAEEFSEAQDMYY 144
Query: 128 FETSSRSGFQVENAFTAVTQEI 149
ETS++ VE F + +
Sbjct: 145 LETSAKESDNVEKLFLDLACRL 166
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 91.5 bits (226), Expect = 3e-24
Identities = 60/159 (37%), Positives = 90/159 (56%), Gaps = 8/159 (5%)
Query: 3 TLLYLYIQ----ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
LL+ +I+ F + G +KLQ+WDTAGQERFRS+T+SYYR +
Sbjct: 20 CLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAA 79
Query: 59 GALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKA 118
GALLVYDITSR ++ + W+ +A+ + + L G K REV+ EA
Sbjct: 80 GALLVYDITSRETYNALTNWLTDARMLASQNIVII-LCGNK---KDLDADREVTFLEASR 135
Query: 119 FASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGD 157
FA +N+++ ETS+ +G VE AF ++I N+++SG+
Sbjct: 136 FAQENELMFLETSALTGENVEEAFVQCARKILNKIESGE 174
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 89.5 bits (221), Expect = 2e-23
Identities = 63/149 (42%), Positives = 87/149 (58%), Gaps = 5/149 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ S T+GV+F R + + DG IK Q+WDTAGQER+R IT +YYR +VGALLVYDI
Sbjct: 29 FNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIA 87
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
++E++ W+ E + H + + + LVG K DL R V EA+AFA +N++
Sbjct: 88 KHLTYENVERWLKELRDHADSNIVIM-LVGNKSDLRH---LRAVPTDEARAFAEKNNLSF 143
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSG 156
ETS+ VE AF + EIY V
Sbjct: 144 IETSALDSTNVEEAFKNILTEIYRIVSQK 172
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 88.8 bits (219), Expect = 3e-23
Identities = 56/122 (45%), Positives = 83/122 (68%), Gaps = 4/122 (3%)
Query: 29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEP 88
G +IKLQ+WDTAGQERFR++T+SYYR + GAL+VYDIT R+++ H+ W+ +A+ P
Sbjct: 49 SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP 108
Query: 89 HRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE 148
+ + L+G K DL R+V+ EAK FA +N +L E S+++G VE+AF ++
Sbjct: 109 NTVII-LIGNKADLEA---QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKK 164
Query: 149 IY 150
IY
Sbjct: 165 IY 166
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 87.2 bits (215), Expect = 1e-22
Identities = 49/145 (33%), Positives = 73/145 (50%), Gaps = 5/145 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ TVG+DF + + D RIKLQ+WDTAGQER+R+IT +YYR ++G +L+YDIT
Sbjct: 30 FTPAFVSTVGIDFKVKTIYRNDK-RIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT 88
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
+ SF + W + K + + V LVG K D+ V + A
Sbjct: 89 NEESFNAVQDWSTQIKTYSWDNAQVL-LVGNKCDMEDERVVSSERGRQ---LADHLGFEF 144
Query: 128 FETSSRSGFQVENAFTAVTQEIYNR 152
FE S++ V+ F + I +
Sbjct: 145 FEASAKDNINVKQTFERLVDVICEK 169
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 82.2 bits (202), Expect = 1e-20
Identities = 65/151 (43%), Positives = 97/151 (64%), Gaps = 5/151 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ + D T+GV+F AR+V + +IKLQ+WDTAGQE FRSIT+SYYR + GALLVYDIT
Sbjct: 28 FQPVHDLTIGVEFGARMVNIDGK-QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT 86
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
R +F H+ W+ +A++H + + L+G K D R+V E +AFA ++ ++
Sbjct: 87 RRETFNHLTSWLEDARQHSSSNMVIM-LIGNKSD---LESRRDVKREEGEAFAREHGLIF 142
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDY 158
ETS+++ VE AF +EIY ++Q G +
Sbjct: 143 METSAKTACNVEEAFINTAKEIYRKIQQGLF 173
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 78.2 bits (191), Expect = 3e-19
Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 1/147 (0%)
Query: 3 TLLYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALL 62
T+LY T + T+ I +WD GQ++ R + + Y++N+ G +
Sbjct: 15 TILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 73
Query: 63 VYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ 122
V D R +M E V + K DL + E+++
Sbjct: 74 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH 133
Query: 123 NDILHFETSSRSGFQVENAFTAVTQEI 149
+ T + SG + ++ ++
Sbjct: 134 RNWYIQATCATSGDGLYEGLDWLSNQL 160
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 78.1 bits (191), Expect = 5e-19
Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 1/147 (0%)
Query: 3 TLLYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALL 62
T+LY T + T+ +K +WD GQ++ R + + YY + G +
Sbjct: 27 TILYKLKLGQSVTTIPTVGFNVETVTYK-NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 85
Query: 63 VYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ 122
V D R + + E + + K DL + P E+ E
Sbjct: 86 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRD 145
Query: 123 NDILHFETSSRSGFQVENAFTAVTQEI 149
+ + + SG + T +T
Sbjct: 146 RNWYVQPSCATSGDGLYEGLTWLTSNY 172
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 76.2 bits (186), Expect = 3e-18
Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 1/150 (0%)
Query: 3 TLLYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALL 62
T+LY T + T+ +KL +WD GQ R + YY ++ +
Sbjct: 32 TILYRLQIGEVVTTKPTIGFNVETLSYK-NLKLNVWDLGGQTSIRPYWRCYYADTAAVIF 90
Query: 63 VYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ 122
V D T + + + E + K D + EVS+
Sbjct: 91 VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKD 150
Query: 123 NDILHFETSSRSGFQVENAFTAVTQEIYNR 152
+S+ G + + I
Sbjct: 151 RSWSIVASSAIKGEGITEGLDWLIDVIKEE 180
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 75.8 bits (185), Expect = 4e-18
Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 1/147 (0%)
Query: 3 TLLYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALL 62
T+LY + + + + + +WD GQE RS +YY N+ ++
Sbjct: 30 TILYQFSMNEVVHTSPTIGSNVEEIVIN-NTRFLMWDIGGQESLRSSWNTYYTNTEFVIV 88
Query: 63 VYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ 122
V D T R + + H + + + K D+ + E+S+
Sbjct: 89 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKD 148
Query: 123 NDILHFETSSRSGFQVENAFTAVTQEI 149
+ + +G + + +
Sbjct: 149 HQWHIQACCALTGEGLCQGLEWMMSRL 175
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 75.0 bits (183), Expect = 6e-18
Identities = 50/142 (35%), Positives = 79/142 (55%), Gaps = 5/142 (3%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ T+G+DF ++ + I+LQLWDTAGQERFRS+ SY R+S A++VYDIT
Sbjct: 25 FDNTYQATIGIDFLSK-TMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDIT 83
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
+ SF+ W+ + + + LVG K DL R+VS E + A + +++
Sbjct: 84 NVNSFQQTTKWIDDVRTERGSDVIIM-LVGNKTDLAD---KRQVSIEEGERKAKELNVMF 139
Query: 128 FETSSRSGFQVENAFTAVTQEI 149
ETS+++G+ V+ F V +
Sbjct: 140 IETSAKAGYNVKQLFRRVAAAL 161
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 74.3 bits (181), Expect = 1e-17
Identities = 46/112 (41%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 38 WDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVG 97
WDTAGQERF S+ YYRN+ AL+VYD+T SF W+ E + ALVG
Sbjct: 57 WDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIIIALVG 115
Query: 98 CKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149
K+D+LQ G R+V+ E + A + +L FETS+++G V + F + ++I
Sbjct: 116 NKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 72.6 bits (177), Expect = 4e-17
Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 3 TLLYLYIQ---ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVG 59
L ++ I ++ F R D + L++ DTAG E+F S+ Y +N G
Sbjct: 18 ALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQG 77
Query: 60 ALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAF 119
+LVY + ++ SF+ I + R + LVG K+DL REVS +E +A
Sbjct: 78 FILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES---EREVSSSEGRAL 134
Query: 120 ASQNDILHFETSSRSGFQVENAFTAVTQEIY 150
A + ETS++S V+ F + +++
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 71.1 bits (173), Expect = 2e-16
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 27 MRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHI 86
G R+ L +WDTAGQERF ++ YYR+S GA+LVYDIT SF+ + W+ E ++ +
Sbjct: 46 NIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML 105
Query: 87 EPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVT 146
+ + R VS EA+++A H+ TS++ +E F +
Sbjct: 106 GNEICLCIVGNKIDL----EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 161
Query: 147 QEIY 150
+ +
Sbjct: 162 KRMI 165
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 70.8 bits (172), Expect = 2e-16
Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 4/119 (3%)
Query: 32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRP 91
+K ++WDTAGQER+ S+ YYR + A++VYDIT+ SF W+ E +R P+
Sbjct: 54 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV 113
Query: 92 VFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY 150
+ L G K DL R V EA+++A N +L ETS+++ V F A+ +++
Sbjct: 114 IA-LSGNKADLAN---KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 70.4 bits (171), Expect = 4e-16
Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 8/134 (5%)
Query: 20 FFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWM 79
F DG + +Q+WDTAGQERFRS+ +YR S LL + + SF+++ W
Sbjct: 42 EFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWK 101
Query: 80 MEAKRHI---EPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-DILHFETSSRSG 135
E + EP F ++G K+D+ + R+VS EA+A+ N D +FETS++
Sbjct: 102 KEFIYYADVKEPESFPFVILGNKIDISE----RQVSTEEAQAWCRDNGDYPYFETSAKDA 157
Query: 136 FQVENAFTAVTQEI 149
V AF + +
Sbjct: 158 TNVAAAFEEAVRRV 171
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 68.8 bits (167), Expect = 1e-15
Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 6/153 (3%)
Query: 3 TLLYLYIQ---ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVG 59
L ++ + D R + DG +++ + DTAGQE + +I +Y+R+ G
Sbjct: 19 ALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 78
Query: 60 ALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAF 119
L V+ IT SF + + R E F LVG K DL R+VS EAK
Sbjct: 79 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED---KRQVSVEEAKNR 135
Query: 120 ASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152
A Q ++ + ETS+++ V+ F + +EI R
Sbjct: 136 ADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 68.5 bits (166), Expect = 2e-15
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 6/155 (3%)
Query: 3 TLLYLYIQ---ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVG 59
L +IQ +SD ++ + DG +L + DTAGQE F ++ + Y R G
Sbjct: 21 ALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 80
Query: 60 ALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAF 119
LLV+ I R SF + + R + LVG K DL R+V +EA AF
Sbjct: 81 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES---QRQVPRSEASAF 137
Query: 120 ASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154
+ + + +FE S++ V+ AF + + + +
Sbjct: 138 GASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQE 172
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 68.1 bits (165), Expect = 2e-15
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 6/143 (4%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
++ DPT+ + ++V + L + DTAGQE + ++ Y R G L V+ I
Sbjct: 28 FVDEYDPTIEDSYRKQVVIDGE--TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAIN 85
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
+ SFE I + + KR + LVG K DL V ++ A+ I +
Sbjct: 86 NTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLAR----SYGIPY 141
Query: 128 FETSSRSGFQVENAFTAVTQEIY 150
ETS+++ VE+AF + +EI
Sbjct: 142 IETSAKTRQGVEDAFYTLVREIR 164
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 67.7 bits (164), Expect = 5e-15
Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 1/147 (0%)
Query: 3 TLLYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALL 62
TLL + + +++ KL +WD GQ + R +SY+ N+ +
Sbjct: 31 TLLKQLASEDISHITPTQGFNIKSVQSQ-GFKLNVWDIGGQRKIRPYWRSYFENTDILIY 89
Query: 63 VYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ 122
V D R FE + E + + K DLL + E++E
Sbjct: 90 VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRD 149
Query: 123 NDILHFETSSRSGFQVENAFTAVTQEI 149
S+ +G V++ V + +
Sbjct: 150 RVWQIQSCSALTGEGVQDGMNWVCKNV 176
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 66.6 bits (161), Expect = 1e-14
Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
Y Q T+G DF + VT+ +Q+WDTAGQERF+S+ ++YR + +LVYD+T
Sbjct: 27 YSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVT 86
Query: 68 SRASFEHIPVWMMEAKRHIEPH---RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND 124
+ +SFE+I W E H + F ++G K+D +S A+ A S D
Sbjct: 87 NASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELA-KSLGD 145
Query: 125 ILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154
I F TS+++ V+ AF + + + Q
Sbjct: 146 IPLFLTSAKNAINVDTAFEEIARSALQQNQ 175
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 66.2 bits (160), Expect = 2e-14
Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 3 TLLYLYIQ---ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVG 59
L +IQ ++D ++ + D +L + DTAGQE F ++ + Y R G
Sbjct: 20 ALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEG 79
Query: 60 ALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAF 119
LLV+ +T R SFE I + + R + L+G K DL R+V++ E +
Sbjct: 80 FLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH---QRQVTQEEGQQL 136
Query: 120 ASQNDILHFETSSRSGFQVENAFTAVTQEIY 150
A Q + + E S++ V+ AF + + I
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVRVIR 167
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 65.8 bits (159), Expect = 2e-14
Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 13/158 (8%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ PTV ++ + M G L L+DTAGQE + + Y + L+ + +
Sbjct: 28 FPSEYVPTVFDNYAVTV--MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 85
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS---------EAEAKA 118
S +SFE++ + H P P LVG ++DL E A+
Sbjct: 86 SPSSFENVKEKWVPEITHHCPKTPFL-LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 144
Query: 119 FASQ-NDILHFETSSRSGFQVENAFTAVTQEIYNRVQS 155
A + + E S+ + ++N F +
Sbjct: 145 LARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 65.4 bits (158), Expect = 3e-14
Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 6/144 (4%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+++ DPT+ + ++ + L++ DTAG E+F ++ Y +N G LVY IT
Sbjct: 28 FVEKYDPTIEDSYRKQVEVDCQ--QCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSIT 85
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDIL 126
++++F + + R + LVG K DL R V + + + A Q +
Sbjct: 86 AQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED---ERVVGKEQGQNLARQWCNCA 142
Query: 127 HFETSSRSGFQVENAFTAVTQEIY 150
E+S++S V F + ++I
Sbjct: 143 FLESSAKSKINVNEIFYDLVRQIN 166
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 65.1 bits (157), Expect = 3e-14
Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 1/150 (0%)
Query: 3 TLLYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALL 62
T+L + T+ + T+ KL +WD GQ+ RS ++Y+ ++ G +
Sbjct: 17 TILKKFNGEDVDTISPTLGFNIKTLEHR-GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 75
Query: 63 VYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ 122
V D R + + + K DL + + EA
Sbjct: 76 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRS 135
Query: 123 NDILHFETSSRSGFQVENAFTAVTQEIYNR 152
+ S+ +G + + +I +R
Sbjct: 136 HHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 62.3 bits (150), Expect = 5e-13
Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 14/162 (8%)
Query: 3 TLLYLYIQ---ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVG 59
LL Y + V + G + L L+DTAGQE + + Y +
Sbjct: 24 CLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 83
Query: 60 ALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL---------LQSGVPRE 110
L+ + + + ASF+++ + + P+ P +G ++DL L +
Sbjct: 84 FLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLL-IGTQIDLRDDPKTLARLNDMKEKP 142
Query: 111 VSEAEAKAFASQ-NDILHFETSSRSGFQVENAFTAVTQEIYN 151
+ + + A + + E S+ + ++ F I
Sbjct: 143 ICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT 184
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 61.6 bits (148), Expect = 8e-13
Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 4/116 (3%)
Query: 36 QLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFAL 95
+WDTAG ERFR++ YYR S A++VYDIT +F + W+ E ++H P V +
Sbjct: 56 LIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVA-I 114
Query: 96 VGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151
G K DL REV E +AK +A + ETS+++ + F +++ I +
Sbjct: 115 AGNKCDLTD---VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 167
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 60.4 bits (145), Expect = 2e-12
Identities = 55/142 (38%), Positives = 80/142 (56%), Gaps = 8/142 (5%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERF-RSITKSYYRNSVGALLVYDI 66
+ ++ T+GVDF R V + RIK+QLWDTAGQERF +S+ + YYRN + VYD+
Sbjct: 27 FPDRTEATIGVDFRERAVDIDGE-RIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDM 85
Query: 67 TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126
T+ ASF +P W+ E K+H+ + LVG K DL +V A+ FA + +
Sbjct: 86 TNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS---AIQVPTDLAQKFADTHSMP 142
Query: 127 HFETSSRS---GFQVENAFTAV 145
FETS+++ VE F +
Sbjct: 143 LFETSAKNPNDNDHVEAIFMTL 164
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 60.4 bits (145), Expect = 2e-12
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 7/154 (4%)
Query: 3 TLLYLYIQ---ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVG 59
L + Q + D ++ T D L + DTAGQE F ++ + Y R G
Sbjct: 19 ALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 78
Query: 60 ALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAF 119
L+VY +T +ASFEH+ + R + LV K+DL+ R+V+ + K
Sbjct: 79 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL---RKVTRDQGKEM 135
Query: 120 ASQNDILHFETSSRSG-FQVENAFTAVTQEIYNR 152
A++ +I + ETS++ V+ F + + I +
Sbjct: 136 ATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 169
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 60.4 bits (145), Expect = 2e-12
Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 14/162 (8%)
Query: 3 TLLYLYIQ---ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVG 59
LL Y + V M DG + L LWDTAGQE + + Y +
Sbjct: 20 CLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 79
Query: 60 ALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPRE--------- 110
+L+ + + S ASFE++ RH P+ P+ VG KLDL E
Sbjct: 80 SLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL-VGTKLDLRDDKDTIEKLKEKKLTP 138
Query: 111 VSEAEAKAFASQ-NDILHFETSSRSGFQVENAFTAVTQEIYN 151
++ + A A + + + E S+ + ++ F + +
Sbjct: 139 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 56.6 bits (135), Expect = 6e-11
Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 7/159 (4%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ T+G DF + V + D + +Q+WDTAGQERF+S+ ++YR + +LV+D+T
Sbjct: 27 FSNQYKATIGADFLTKEVMVDDR-LVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVT 85
Query: 68 SRASFEHIPVWMMEAKRHIEPHRP---VFALVGCKLDLLQSGVPREVSEAEAKAFASQND 124
+ +F+ + W E P P F ++G K+DL + ++ S+N+
Sbjct: 86 APNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN---RQVATKRAQAWCYSKNN 142
Query: 125 ILHFETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDG 163
I +FETS++ VE AF + + + + E
Sbjct: 143 IPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFP 181
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 56.6 bits (135), Expect = 6e-11
Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 14/156 (8%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ + PTV ++ A D RI+L LWDT+G + ++ Y +S L+ +DI+
Sbjct: 27 FPENYVPTVFENYTAS--FEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDIS 84
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP---------REVSEAEAKA 118
+ + + + P+ + LVGCK DL VS +
Sbjct: 85 RPETLDSVLKKWKGEIQEFCPNTKML-LVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 143
Query: 119 FASQNDILHF-ETSSRSGF-QVENAFTAVTQEIYNR 152
A Q + E S+ V + F T N+
Sbjct: 144 MAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 179
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 55.0 bits (131), Expect = 2e-10
Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 13/152 (8%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ ++ PTV ++ A DG +++L LWDTAG E + + Y ++ L+ + I
Sbjct: 27 FPEVYVPTVFENYVAD--IEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID 84
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV---------SEAEAKA 118
S S E+IP +H P+ P+ VG K DL R E +
Sbjct: 85 SPDSLENIPEKWTPEVKHFCPNVPIIL-VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 143
Query: 119 FASQ-NDILHFETSSRSGFQVENAFTAVTQEI 149
A++ + E S+++ V F T+
Sbjct: 144 MANRIGAFGYMECSAKTKDGVREVFEMATRAA 175
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 53.9 bits (128), Expect = 5e-10
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 5/121 (4%)
Query: 30 GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPH 89
++L LWDTAGQE F +ITK+YYR + +LV+ T R SFE I W + +
Sbjct: 48 DEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDI 107
Query: 90 RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149
+ EA+ A + + + TS + V F + ++
Sbjct: 108 PTALVQNKI-----DLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162
Query: 150 Y 150
Sbjct: 163 L 163
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 53.5 bits (127), Expect = 7e-10
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 7/146 (4%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+I DPT+ + + D + +++ DT + + + R G +LVYDIT
Sbjct: 27 FIWEYDPTLESTYRHQ--ATIDDEVVSMEILDT-AGQEDTIQREGHMRWGEGFVLVYDIT 83
Query: 68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
R SFE + +P LVG K DL R+VS E + A++
Sbjct: 84 DRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH---SRQVSTEEGEKLATELACAF 140
Query: 128 FETSSRSG-FQVENAFTAVTQEIYNR 152
+E S+ +G + F + +E+ R
Sbjct: 141 YECSACTGEGNITEIFYELCREVRRR 166
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 50.8 bits (120), Expect = 6e-09
Identities = 36/149 (24%), Positives = 55/149 (36%), Gaps = 6/149 (4%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
+ + PTV + + + LQ+ DT G +F ++ + +LVY IT
Sbjct: 27 FRESYIPTVEDTYRQVISCDKS--ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSIT 84
Query: 68 SRASFEHIPVWMMEAKRHIEPHRP-VFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126
SR S E + + LVG K REV +EA+A A
Sbjct: 85 SRQSLEELKPIYEQICEIKGDVESIPIMLVGNKC---DESPSREVQSSEAEALARTWKCA 141
Query: 127 HFETSSRSGFQVENAFTAVTQEIYNRVQS 155
ETS++ V+ F + R S
Sbjct: 142 FMETSAKLNHNVKELFQELLNLEKRRTVS 170
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 47.8 bits (112), Expect = 7e-08
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 6/150 (4%)
Query: 3 TLLYLYIQ---ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVG 59
+L +++ + ++ + +G LQL DTAGQ+ + ++Y + G
Sbjct: 19 SLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 78
Query: 60 ALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAF 119
+LVY +TS SFE I V + + + LVG K DL R +S E KA
Sbjct: 79 YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM---ERVISYEEGKAL 135
Query: 120 ASQNDILHFETSSRSGFQVENAFTAVTQEI 149
A + E+S++ + F + E
Sbjct: 136 AESWNAAFLESSAKENQTAVDVFRRIILEA 165
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 46.3 bits (108), Expect = 2e-07
Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 7/156 (4%)
Query: 3 TLLYLYIQISD---PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVG 59
L ++ + D + R + DG L ++D Q+ R +
Sbjct: 16 ALARIFGGVEDGPEAEAAGHTYDR-SIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDA 74
Query: 60 ALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAF 119
++VY +T + SFE ++ +R + LVG K DL++S REVS E +A
Sbjct: 75 YVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS---REVSVDEGRAC 131
Query: 120 ASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQS 155
A D ETS+ V+ F V ++I R S
Sbjct: 132 AVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDS 167
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 45.7 bits (107), Expect = 5e-07
Identities = 21/183 (11%), Positives = 43/183 (23%), Gaps = 38/183 (20%)
Query: 3 TLLYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALL 62
T++ I + G+ T + +++D GQ R + +
Sbjct: 17 TIVKQMKIIHEAGTGIV-----ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF 71
Query: 63 VYDITSRASF-----------EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGV---- 107
++ E + ++ + + K +
Sbjct: 72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPL 131
Query: 108 ------------PREVSEAEAKAFASQN------DILHFETSSRSGFQVENAFTAVTQEI 149
E + F N +I T + V+ F AVT I
Sbjct: 132 TICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 191
Query: 150 YNR 152
Sbjct: 192 IKN 194
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 45.1 bits (105), Expect = 7e-07
Identities = 19/159 (11%), Positives = 40/159 (25%), Gaps = 13/159 (8%)
Query: 3 TLLYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALL 62
TLL++ + + +D G + R + K+Y G +
Sbjct: 28 TLLHMLKDDRLGQHVPTLHPTSEELTIA-GMTFTTFDLGGHIQARRVWKNYLPAINGIVF 86
Query: 63 VYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEA-------- 114
+ D + ++G K+D ++ + E
Sbjct: 87 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTT 146
Query: 115 ----EAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149
+ + + F S F + Q I
Sbjct: 147 GKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 43.8 bits (102), Expect = 2e-06
Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 2/104 (1%)
Query: 53 YYRNSVGALLVYDITSRASFEHIPVWMMEAKR--HIEPHRPVFALVGCKLDLLQSGVPRE 110
+ + + V+ + SF+ + + ALVG + + S
Sbjct: 67 FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVV 126
Query: 111 VSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154
A ++ET + G V+ F V Q++ +
Sbjct: 127 GDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRK 170
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 42.1 bits (97), Expect = 8e-06
Identities = 39/146 (26%), Positives = 58/146 (39%), Gaps = 4/146 (2%)
Query: 8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYR-NSVGALLVYDI 66
SD V + M DG + L D + + L+VY I
Sbjct: 28 DSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSI 87
Query: 67 TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126
T RASFE ++ +R + LVG K DL++ REVS +E +A A D
Sbjct: 88 TDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR---CREVSVSEGRACAVVFDCK 144
Query: 127 HFETSSRSGFQVENAFTAVTQEIYNR 152
ETS+ V+ F + +++ R
Sbjct: 145 FIETSAAVQHNVKELFEGIVRQVRLR 170
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 41.8 bits (97), Expect = 1e-05
Identities = 22/186 (11%), Positives = 42/186 (22%), Gaps = 41/186 (22%)
Query: 3 TLLYLYIQISD---PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVG 59
T + I PT G+ D + ++ D GQ R + N
Sbjct: 17 TFIKQMRIIHGSGVPTTGIIE-----YPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTS 71
Query: 60 ALLVYDITSRAS-----------FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP 108
+ + ++ E ++ + V + K L + +
Sbjct: 72 IMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMY 131
Query: 109 REVSEA----------------------EAKAFASQNDILHFETSSRSGFQVENAFTAVT 146
+ + S I T + + F AV
Sbjct: 132 SHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVK 191
Query: 147 QEIYNR 152
I
Sbjct: 192 DTILQL 197
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 40.4 bits (93), Expect = 3e-05
Identities = 28/114 (24%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 38 WDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVG 97
WDTAGQE+F + YY + A++++D+TSR +++++P W + R L G
Sbjct: 57 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCG 114
Query: 98 CKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151
K+D+ +A++ F + ++ +++ S++S + E F + +++
Sbjct: 115 NKVDI-----KDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 163
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 39.5 bits (91), Expect = 8e-05
Identities = 12/87 (13%), Positives = 22/87 (25%), Gaps = 7/87 (8%)
Query: 3 TLLYLY--IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGA 60
T L I DPT G+ + + ++ D GQ R + +
Sbjct: 17 TFLKQMRIIHGQDPTKGIH-----EYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSI 71
Query: 61 LLVYDITSRASFEHIPVWMMEAKRHIE 87
L + + +
Sbjct: 72 LFLVSSSEFDQVLMEDRQTNRLTESLN 98
>d1xp4a2 e.3.1.1 (A:25-293) D,D-carboxypeptidase DacA, N-terminal
domain {Streptococcus pneumoniae [TaxId: 1313]}
Length = 269
Score = 29.5 bits (65), Expect = 0.19
Identities = 15/102 (14%), Positives = 32/102 (31%)
Query: 73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
+ W ++ + +G + A A ++N I +
Sbjct: 120 AKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAIVARNLIKKYPQVL 179
Query: 133 RSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRT 174
+ + F +T N + G G++G+KTG +
Sbjct: 180 EITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDK 221
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 28.5 bits (63), Expect = 0.43
Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 5/90 (5%)
Query: 28 RDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIE 87
DG + L D+ G F S + R + GAL+V D + V
Sbjct: 91 TDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-----QAL 145
Query: 88 PHRPVFALVGCKLDLLQSGVPREVSEAEAK 117
R +V K+D + +
Sbjct: 146 GERIKPVVVINKVDRALLELQVSKEDLYQT 175
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 27.8 bits (60), Expect = 0.65
Identities = 9/82 (10%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Query: 71 SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
++ ++ + ++ K D + G + ++ + +
Sbjct: 115 LRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILF 174
Query: 131 SSRSGFQVENAFTAVTQEIYNR 152
SS + + A+ A+ +++ NR
Sbjct: 175 SSETKKGKDEAWGAI-KKMINR 195
>d1tvfa2 e.3.1.1 (A:15-315) Pencillin binding protein 4 (PbpD),
N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Length = 301
Score = 27.9 bits (61), Expect = 0.73
Identities = 19/110 (17%), Positives = 29/110 (26%)
Query: 64 YDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN 123
M+ + P + + R V+ A A +
Sbjct: 141 TSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLH 200
Query: 124 DILHFETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSR 173
I Q+ AVT +N G G +G+KTG S
Sbjct: 201 VIKETPKILDFTKQLAPTTHAVTYYTFNFSLEGAKMSLPGTDGLKTGSSD 250
>d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase
{Acetobacter pasteurianus [TaxId: 438]}
Length = 385
Score = 27.0 bits (58), Expect = 1.8
Identities = 9/59 (15%), Positives = 16/59 (27%), Gaps = 2/59 (3%)
Query: 25 VTMRDGARIKLQLWDTAGQERFRSI--TKSYYRNSVGALLVYDITSRASFEHIPVWMME 81
V MRDG ++ + + Y + +T R +E
Sbjct: 33 VPMRDGVKLYTVIVIPKNARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVE 91
>d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human
(Homo sapiens) [TaxId: 9606]}
Length = 356
Score = 26.4 bits (57), Expect = 2.7
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 73 EHIPVWMME-AKRHIEPHRPV 92
++ PVW M A R++ R
Sbjct: 19 DYTPVWCMRQAGRYLPEFRET 39
>d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase
{Xanthomonas citri [TaxId: 346]}
Length = 381
Score = 26.3 bits (56), Expect = 2.9
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Query: 14 PTVGVDFFARLV--TMRDGARIKLQLWDTAGQERFRSI-TKSYYRNSVGALLVYDITSRA 70
D+ R V MRDG ++ + G + + T++ Y S + +
Sbjct: 16 ADASNDYIKREVMIPMRDGVKLHTVIVLPKGAKNAPIVLTRTPYDASGRTERLASPHMKD 75
Query: 71 SFEHIPVWMMEA 82
+E
Sbjct: 76 LLSAGDDVFVEG 87
>d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD
{Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]}
Length = 343
Score = 24.5 bits (52), Expect = 9.5
Identities = 7/19 (36%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 73 EHIPVWMM-EAKRHIEPHR 90
E PVW+M +A R+++ ++
Sbjct: 15 ERPPVWLMRQAGRYMKSYQ 33
>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Baker's yeast
(Saccharomyces cerevisiae), His7 [TaxId: 4932]}
Length = 323
Score = 24.4 bits (52), Expect = 9.8
Identities = 10/48 (20%), Positives = 16/48 (33%)
Query: 51 KSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGC 98
+ YY+ + +ITS M+E + V VG
Sbjct: 55 QKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGG 102
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.397
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 687,225
Number of extensions: 28762
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 62
Length of query: 193
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 112
Effective length of database: 1,295,466
Effective search space: 145092192
Effective search space used: 145092192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.7 bits)