BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3800
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X47|A Chain A, Crystal Structure Of Human Macrod1
Length = 235
Score = 86.7 bits (213), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 57/86 (66%), Gaps = 12/86 (13%)
Query: 7 IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV------ 60
+DG IHRAAGP L +ECRTL C+TG AKIT GY LP AK+VIHTVGP+
Sbjct: 93 VDGCIHRAAGPLLTDECRTLQSCKTGKAKITGGYRLP------AKYVIHTVGPIAYGEPS 146
Query: 61 GEKPALLKSAYQRSLEVMKQNNLRSI 86
+ A L+S Y SL+++ ++ LRS+
Sbjct: 147 ASQAAELRSCYLSSLDLLLEHRLRSV 172
>pdb|1SPV|A Chain A, Crystal Structure Of The Putative Phosphatase Of
Escherichia Coli, Northeast Structural Genomoics Target
Er58
Length = 184
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 50/89 (56%), Gaps = 15/89 (16%)
Query: 7 IDGAIHRAAGPQLKEECRTL----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV-- 60
+DGAIHRAAGP L + C + C TG A IT +LPAK V+HTVGPV
Sbjct: 34 VDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKA------VVHTVGPVWR 87
Query: 61 -GEK--PALLKSAYQRSLEVMKQNNLRSI 86
GE+ LL+ AY SL ++ N+ S+
Sbjct: 88 GGEQNEDQLLQDAYLNSLRLVAANSYTSV 116
>pdb|4ESS|A Chain A, Crystal Structure Of E6dL155R VARIANT OF DE NOVO DESIGNED
SERINE Hydrolase Osh55, Northeast Structural Genomics
Consortium (Nesg) Target Or187
Length = 167
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 10/83 (12%)
Query: 7 IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPAL 66
+ GAI R GP ++EEC + G+A +T NLP ++VIH +G++PA
Sbjct: 33 VAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLP------VRYVIHAA-VLGDEPAS 85
Query: 67 LKS---AYQRSLEVMKQNNLRSI 86
L++ A + +LE + L+++
Sbjct: 86 LETVRKATKSALEKAVELGLKTV 108
>pdb|3V45|A Chain A, Crystal Structure Of De Novo Designed Serine Hydrolase
Osh55, Northeast Structural Genomics Consortium Target
Or130
Length = 167
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 10/83 (12%)
Query: 7 IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPAL 66
+ GAI R GP ++EEC + G+A +T NLP ++VIH +G++PA
Sbjct: 33 VAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLP------VRYVIHAA-VLGDEPAS 85
Query: 67 LKS---AYQRSLEVMKQNNLRSI 86
L++ A + +LE + L+++
Sbjct: 86 LETVRKATKSALEKAVELGLKTV 108
>pdb|2DX6|A Chain A, Crystal Structure Of Conserved Hypothetical Protein,
Ttha0132 From Thermus Thermophilus Hb8
pdb|2DX6|B Chain B, Crystal Structure Of Conserved Hypothetical Protein,
Ttha0132 From Thermus Thermophilus Hb8
Length = 159
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 10/83 (12%)
Query: 7 IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPAL 66
+ GAI R GP ++EEC + G+A +T NLP ++VIH +G++PA
Sbjct: 33 VAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLP------VRYVIHAA-VLGDEPAS 85
Query: 67 LKS---AYQRSLEVMKQNNLRSI 86
L++ A + +LE + L+++
Sbjct: 86 LETVRKATKSALEKAVELGLKTV 108
>pdb|4ETJ|A Chain A, Crystal Structure Of E6h Variant Of De Novo Designed
Serine Hydrolase Osh55, Northeast Structural Genomics
Consortium (Nesg) Target Or185
Length = 167
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 10/83 (12%)
Query: 7 IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPAL 66
+ GAI R GP ++EEC + G+A +T NLP ++VIH +G++PA
Sbjct: 33 VAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLP------VRYVIHAA-VLGDEPAS 85
Query: 67 LKS---AYQRSLEVMKQNNLRSI 86
L++ A + +LE + L+++
Sbjct: 86 LETVRKATKSALEKAVELGLKTV 108
>pdb|4GVV|A Chain A, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|B Chain B, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|C Chain C, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|D Chain D, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
Length = 167
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 10/83 (12%)
Query: 7 IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPAL 66
+ GAI R GP ++EEC + G+A +T NLP ++VIH +G++PA
Sbjct: 33 VAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLP------VRYVIHAA-VLGDEPAS 85
Query: 67 LKS---AYQRSLEVMKQNNLRSI 86
L++ A + +LE + L+++
Sbjct: 86 LETVRKATKSALEKAVELGLKTV 108
>pdb|4ETK|A Chain A, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO
DESIGNED Serine Hydrolase, Northeast Structural Genomics
Consortium (Nesg) Target Or186
pdb|4ETK|B Chain B, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO
DESIGNED Serine Hydrolase, Northeast Structural Genomics
Consortium (Nesg) Target Or186
Length = 167
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 10/83 (12%)
Query: 7 IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPAL 66
+ GAI R GP ++EEC + G+A +T NLP ++VIH +G++PA
Sbjct: 33 VAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLP------VRYVIHAA-VLGDEPAS 85
Query: 67 LKS---AYQRSLEVMKQNNLRSI 86
L++ A + +LE + L+++
Sbjct: 86 LETVRKATKSALEKAVELGLKTV 108
>pdb|3Q6Z|A Chain A, Human Parp14 (Artd8)-Macro Domain 1 In Complex With
Adenosine-5- Diphosphoribose
Length = 214
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 16/90 (17%)
Query: 7 IDGAIHRAAGPQLKEECRTLNGCE----TGDAKITAGYNLPAKLPINAKHVIHTVGPV-- 60
+ A+ +AAGP+L+ +C + E G+A I+ LP HVIH VGP
Sbjct: 68 LAAALSKAAGPELQADCDQIVKREGRLLPGNATISKAGKLP------YHHVIHAVGPRWS 121
Query: 61 -GEKP---ALLKSAYQRSLEVMKQNNLRSI 86
E P LL+ A Q SL + ++ RSI
Sbjct: 122 GYEAPRCVYLLRRAVQLSLCLAEKYKYRSI 151
>pdb|3GQE|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus
pdb|3GQE|B Chain B, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus
pdb|3GQO|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|B Chain B, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|C Chain C, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|D Chain D, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
Length = 168
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 15/71 (21%)
Query: 22 ECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPA------LLKSAYQRSL 75
E L E G A++ G AKH+IH VGP K + L AY+
Sbjct: 45 ESFDLQPIEVGKARLVKGA---------AKHIIHAVGPNFNKVSEVEGDKQLAEAYESIA 95
Query: 76 EVMKQNNLRSI 86
+++ NN +S+
Sbjct: 96 KIVNDNNYKSV 106
>pdb|1ZR3|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|C Chain C, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|D Chain D, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|2FXK|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form A)
pdb|2FXK|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form A)
pdb|3IID|A Chain A, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form A)
pdb|3IIF|A Chain A, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
pdb|3IIF|B Chain B, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
pdb|3IIF|C Chain C, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
Length = 211
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 22 ECRTLNG-CETGDAKITAGYNLPAKLPINAKHVIHTVGPV--GEK-PALLKSAYQRSLEV 77
E R NG E A ++AG+ LPAK VIH PV +K LL+ + L +
Sbjct: 86 ELRKKNGPLEVAGAAVSAGHGLPAKF------VIHCNSPVWGADKCEELLEKTVKNCLAL 139
Query: 78 MKQNNLRSI 86
L+SI
Sbjct: 140 ADDKKLKSI 148
>pdb|1ZR5|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.2
pdb|1ZR5|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.2
Length = 214
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 22 ECRTLNG-CETGDAKITAGYNLPAKLPINAKHVIHTVGPV--GEK-PALLKSAYQRSLEV 77
E R NG E A ++AG+ LPAK VIH PV +K LL+ + L +
Sbjct: 89 ELRKKNGPLEVAGAAVSAGHGLPAKF------VIHCNSPVWGADKCEELLEKTVKNCLAL 142
Query: 78 MKQNNLRSI 86
L+SI
Sbjct: 143 ADDKKLKSI 151
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 16/80 (20%)
Query: 13 RAAGPQLKEECRTLNGCETGDAKITAGY--NLPAKLPINAKHVIHTVGPVGEKPALLKSA 70
RA QLK E L ++ A NL + +N+K + VG V K+
Sbjct: 132 RALVAQLKSESEDLQ-------QVIASVLRNLSWRADVNSKKTLREVGSV-------KAL 177
Query: 71 YQRSLEVMKQNNLRSILEVM 90
+ +LEV K++ L+S+L +
Sbjct: 178 MECALEVKKESTLKSVLSAL 197
>pdb|1YD9|A Chain A, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|B Chain B, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|C Chain C, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|D Chain D, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1
Length = 193
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 22 ECRTLNG-CETGDAKITAGYNLPAKLPINAKHVIHTVGPV---GEKPALLKSAYQRSLEV 77
E R NG E A ++AG+ LPAK VIH PV + LL+ + L +
Sbjct: 68 ELRKKNGPLEVAGAAVSAGHGLPAKF------VIHCNSPVWGSDKCEELLEKTVKNCLAL 121
Query: 78 MKQNNLRSI 86
L+SI
Sbjct: 122 ADDRKLKSI 130
>pdb|3AU3|A Chain A, Crystal Structure Of Armadillo Repeat Domain Of Apc
Length = 344
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 41 NLPAKLPINAKHVIHTVGPVGEKPALLKSAYQRSLEVMKQNNLRSILEVM 90
NL + +N+K + VG V K+ + +LEV K++ L+S+L +
Sbjct: 162 NLSWRADVNSKKTLREVGSV-------KALXECALEVKKESTLKSVLSAL 204
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 16/80 (20%)
Query: 13 RAAGPQLKEECRTLNGCETGDAKITAGY--NLPAKLPINAKHVIHTVGPVGEKPALLKSA 70
RA QLK E L ++ A NL + +N+K + VG V K+
Sbjct: 246 RALVAQLKSESEDLQ-------QVIASVLRNLSWRADVNSKKTLREVGSV-------KAL 291
Query: 71 YQRSLEVMKQNNLRSILEVM 90
+ +LEV K++ L+S+L +
Sbjct: 292 MECALEVKKESTLKSVLSAL 311
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 16/80 (20%)
Query: 13 RAAGPQLKEECRTLNGCETGDAKITAGY--NLPAKLPINAKHVIHTVGPVGEKPALLKSA 70
RA QLK E L ++ A NL + +N+K + VG V K+
Sbjct: 130 RALVAQLKSESEDLQ-------QVIASVLRNLSWRADVNSKKTLREVGSV-------KAL 175
Query: 71 YQRSLEVMKQNNLRSILEVM 90
+ +LEV K++ L+S+L +
Sbjct: 176 MECALEVKKESTLKSVLSAL 195
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 16/80 (20%)
Query: 13 RAAGPQLKEECRTLNGCETGDAKITAGY--NLPAKLPINAKHVIHTVGPVGEKPALLKSA 70
RA QLK E L ++ A NL + +N+K + VG V K+
Sbjct: 130 RALVAQLKSESEDLQ-------QVIASVLRNLSWRADVNSKKTLREVGSV-------KAL 175
Query: 71 YQRSLEVMKQNNLRSILEVM 90
+ +LEV K++ L+S+L +
Sbjct: 176 MECALEVKKESTLKSVLSAL 195
>pdb|3NMW|A Chain A, Crytal Structure Of Armadillo Repeats Domain Of Apc
pdb|3NMW|B Chain B, Crytal Structure Of Armadillo Repeats Domain Of Apc
Length = 354
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 41 NLPAKLPINAKHVIHTVGPVGEKPALLKSAYQRSLEVMKQNNLRSILEVM 90
NL + +N+K + VG V K+ + +LEV K++ L+S+L +
Sbjct: 153 NLSWRADVNSKKTLREVGSV-------KALXECALEVKKESTLKSVLSAL 195
>pdb|2P6E|A Chain A, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|B Chain B, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|C Chain C, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|D Chain D, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|E Chain E, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|F Chain F, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6F|A Chain A, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|B Chain B, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|C Chain C, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|D Chain D, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|E Chain E, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|F Chain F, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|A Chain A, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|B Chain B, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|C Chain C, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|D Chain D, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|E Chain E, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|F Chain F, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
Length = 455
Score = 26.2 bits (56), Expect = 5.9, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 18/96 (18%)
Query: 19 LKEECRTLNGCETGDAKITAGYNLPAKL--------PINAKHVI----------HTVGPV 60
+KE R +N C+ A TAG LPA + P+N K + HT +
Sbjct: 187 IKEITRRVNKCDIWHALYTAGIVLPAPVSTCRYTHRPLNWKKLYEVDFTGLPDGHTEEDM 246
Query: 61 GEKPALLKSAYQRSLEVMKQNNLRSILEVMKQNNLR 96
+ AL L +K+ ++ + E+ K+ R
Sbjct: 247 IAENALPAKTKTAGLRKLKKEDIDQVFELFKRYQSR 282
>pdb|2NMT|A Chain A, Myristoyl-Coa:protein N-Myristoyltransferase Bound To
Myristoyl-Coa And Peptide Analogs
pdb|1IIC|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoylcoa
pdb|1IIC|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoylcoa
pdb|1IID|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae N-
Myristoyltransferase With Bound S-(2-Oxo)pentadecylcoa
And The Octapeptide Glyaskla
Length = 422
Score = 26.2 bits (56), Expect = 5.9, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 18/96 (18%)
Query: 19 LKEECRTLNGCETGDAKITAGYNLPAKL--------PINAKHVI----------HTVGPV 60
+KE R +N C+ A TAG LPA + P+N K + HT +
Sbjct: 154 IKEITRRVNKCDIWHALYTAGIVLPAPVSTCRYTHRPLNWKKLYEVDFTGLPDGHTEEDM 213
Query: 61 GEKPALLKSAYQRSLEVMKQNNLRSILEVMKQNNLR 96
+ AL L +K+ ++ + E+ K+ R
Sbjct: 214 IAENALPAKTKTAGLRKLKKEDIDQVFELFKRYQSR 249
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,916,819
Number of Sequences: 62578
Number of extensions: 134484
Number of successful extensions: 231
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 26
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)