Query psy3800
Match_columns 133
No_of_seqs 128 out of 1060
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 17:48:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02904 Macro_H2A_like Macro d 100.0 9.2E-34 2E-38 219.0 13.5 94 1-100 45-145 (186)
2 cd02905 Macro_GDAP2_like Macro 100.0 1.4E-33 3.1E-38 208.9 12.4 94 1-100 26-125 (140)
3 PRK04143 hypothetical protein; 100.0 1.6E-30 3.5E-35 210.2 13.0 91 3-99 115-217 (264)
4 cd02906 Macro_1 Macro domain, 100.0 1.9E-30 4.1E-35 193.2 12.2 94 3-102 32-137 (147)
5 cd02908 Macro_Appr_pase_like M 100.0 4.6E-30 1E-34 193.3 13.1 95 1-101 25-124 (165)
6 cd02903 Macro_BAL_like Macro d 100.0 8E-29 1.7E-33 181.9 12.7 96 3-104 29-127 (137)
7 PRK00431 RNase III inhibitor; 100.0 9.2E-29 2E-33 187.7 12.5 98 2-105 29-135 (177)
8 cd02907 Macro_Af1521_BAL_like 100.0 2.4E-28 5.3E-33 185.3 13.2 96 1-102 27-132 (175)
9 COG2110 Predicted phosphatase 99.9 4.4E-27 9.6E-32 180.9 11.5 95 2-102 29-134 (179)
10 cd03330 Macro_2 Macro domain, 99.9 1.5E-26 3.3E-31 168.0 11.8 96 1-102 25-123 (133)
11 PF01661 Macro: Macro domain; 99.9 2.8E-26 6.1E-31 160.6 10.2 97 1-103 8-114 (118)
12 KOG2633|consensus 99.9 6.3E-24 1.4E-28 165.4 9.7 111 2-124 53-168 (200)
13 cd02900 Macro_Appr_pase Macro 99.9 2.9E-22 6.3E-27 154.9 12.5 103 2-104 55-175 (186)
14 smart00506 A1pp Appr-1"-p proc 99.9 9.8E-22 2.1E-26 140.6 11.7 96 2-103 26-129 (133)
15 cd02749 Macro Macro domain, a 99.9 4.2E-21 9.1E-26 139.8 11.5 92 2-99 27-128 (147)
16 PRK13341 recombination factor 99.8 2.9E-22 6.3E-27 180.2 -2.2 94 1-100 504-661 (725)
17 cd02901 Macro_Poa1p_like Macro 99.6 1.8E-15 3.8E-20 110.3 11.0 93 2-101 27-127 (140)
18 PHA02595 tk.4 hypothetical pro 99.4 7.8E-12 1.7E-16 93.8 11.6 91 2-100 30-130 (154)
19 PF14519 Macro_2: Macro-like d 97.5 0.00047 1E-08 56.7 8.2 101 3-104 82-203 (280)
20 cd03331 Macro_Poa1p_like_SNF2 97.4 0.0022 4.8E-08 48.3 10.2 96 2-99 31-137 (152)
21 PF10154 DUF2362: Uncharacteri 96.1 0.035 7.7E-07 49.2 8.6 87 28-123 371-466 (510)
22 TIGR02452 conserved hypothetic 87.7 1.6 3.5E-05 35.7 5.8 38 63-100 186-223 (266)
23 cd01488 Uba3_RUB Ubiquitin act 72.4 13 0.00029 30.7 6.1 66 62-133 196-272 (291)
24 PLN02214 cinnamoyl-CoA reducta 71.7 13 0.00029 30.3 6.0 41 49-89 81-125 (342)
25 PF13460 NAD_binding_10: NADH( 70.6 9.8 0.00021 27.5 4.6 36 49-88 60-95 (183)
26 KOG1502|consensus 66.9 12 0.00027 31.6 4.9 40 49-88 78-126 (327)
27 PRK15181 Vi polysaccharide bio 66.1 13 0.00029 30.2 4.9 48 49-97 90-146 (348)
28 PF01073 3Beta_HSD: 3-beta hyd 65.7 18 0.00039 29.1 5.6 40 49-88 66-113 (280)
29 COG2388 Predicted acetyltransf 58.4 11 0.00024 26.5 2.7 40 51-90 40-80 (99)
30 KOG4506|consensus 48.9 22 0.00048 31.3 3.5 61 28-93 416-482 (598)
31 CHL00194 ycf39 Ycf39; Provisio 48.2 47 0.001 26.6 5.2 40 49-88 64-107 (317)
32 PLN02725 GDP-4-keto-6-deoxyman 46.4 48 0.001 25.8 4.9 40 49-88 49-98 (306)
33 PLN02662 cinnamyl-alcohol dehy 42.8 82 0.0018 24.7 5.8 40 49-88 76-124 (322)
34 PLN02657 3,8-divinyl protochlo 42.8 62 0.0013 27.2 5.3 39 50-88 137-179 (390)
35 PLN02986 cinnamyl-alcohol dehy 41.9 77 0.0017 25.1 5.5 40 49-88 77-125 (322)
36 PLN02778 3,5-epimerase/4-reduc 41.5 56 0.0012 26.2 4.7 40 49-88 57-108 (298)
37 TIGR02197 heptose_epim ADP-L-g 38.0 60 0.0013 25.3 4.3 47 49-97 66-119 (314)
38 PF07905 PucR: Purine cataboli 34.7 1.6E+02 0.0035 20.6 5.8 17 28-44 39-55 (123)
39 COG4295 Uncharacterized protei 34.4 1.6E+02 0.0035 24.1 6.1 37 63-99 198-234 (285)
40 PTZ00325 malate dehydrogenase; 34.2 1.1E+02 0.0024 25.5 5.4 40 49-88 76-122 (321)
41 PF08149 BING4CT: BING4CT (NUC 34.0 11 0.00024 25.6 -0.4 50 71-122 20-69 (80)
42 COG0451 WcaG Nucleoside-diphos 33.6 1.3E+02 0.0028 23.2 5.6 46 51-97 66-121 (314)
43 PF09039 HTH_Tnp_Mu_2: Mu DNA 32.6 29 0.00063 24.6 1.5 31 63-96 47-77 (108)
44 TIGR01777 yfcH conserved hypot 31.7 1E+02 0.0022 23.6 4.6 36 49-84 57-103 (292)
45 PLN02240 UDP-glucose 4-epimera 31.1 1E+02 0.0022 24.6 4.7 48 49-97 81-137 (352)
46 COG1093 SUI2 Translation initi 30.0 75 0.0016 26.3 3.7 34 51-84 222-256 (269)
47 PRK14838 undecaprenyl pyrophos 29.3 1.9E+02 0.004 23.4 5.8 35 65-99 37-71 (242)
48 PF12683 DUF3798: Protein of u 29.2 35 0.00076 28.3 1.7 76 30-111 117-197 (275)
49 PRK14829 undecaprenyl pyrophos 25.9 2.4E+02 0.0051 22.7 5.9 35 65-99 41-75 (243)
50 PLN02650 dihydroflavonol-4-red 25.4 2E+02 0.0044 23.1 5.5 41 49-89 77-126 (351)
51 PRK06052 5-methyltetrahydropte 25.4 1.7E+02 0.0038 25.0 5.2 57 30-95 111-174 (344)
52 TIGR00106 uncharacterized prot 25.0 2E+02 0.0044 19.7 4.7 38 51-88 34-72 (97)
53 PRK14828 undecaprenyl pyrophos 24.5 2.6E+02 0.0056 22.7 5.9 33 67-99 56-88 (256)
54 PF14542 Acetyltransf_CG: GCN5 24.2 1.5E+02 0.0032 19.3 3.8 40 50-89 22-62 (78)
55 COG2921 Uncharacterized conser 23.8 86 0.0019 21.8 2.6 52 13-74 22-80 (90)
56 PRK14827 undecaprenyl pyrophos 23.5 3.3E+02 0.0071 22.7 6.4 33 67-99 96-128 (296)
57 PRK14833 undecaprenyl pyrophos 23.0 3E+02 0.0064 22.1 5.9 34 66-99 32-65 (233)
58 PF01370 Epimerase: NAD depend 22.6 2E+02 0.0042 21.1 4.6 49 49-98 65-122 (236)
59 PRK11150 rfaD ADP-L-glycero-D- 22.3 2.5E+02 0.0054 21.9 5.4 38 50-88 69-113 (308)
60 KOG3369|consensus 22.2 1E+02 0.0022 24.3 2.9 58 33-90 124-182 (199)
61 PHA00684 hypothetical protein 22.0 2.3E+02 0.005 20.9 4.7 37 63-99 54-90 (128)
62 PRK14837 undecaprenyl pyrophos 21.8 3.2E+02 0.0068 22.0 5.8 35 65-99 33-67 (230)
63 PLN00198 anthocyanidin reducta 21.3 3E+02 0.0065 21.9 5.7 40 49-88 80-128 (338)
64 TIGR03589 PseB UDP-N-acetylglu 20.8 2.9E+02 0.0063 22.2 5.6 40 49-88 74-122 (324)
65 PF01910 DUF77: Domain of unkn 20.1 1.2E+02 0.0027 20.5 2.8 39 50-88 31-70 (92)
66 PRK14834 undecaprenyl pyrophos 20.1 3.8E+02 0.0083 21.7 6.0 35 65-99 41-75 (249)
67 PRK11908 NAD-dependent epimera 20.0 2.4E+02 0.0053 22.6 5.0 39 49-88 68-115 (347)
No 1
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=100.00 E-value=9.2e-34 Score=219.02 Aligned_cols=94 Identities=20% Similarity=0.268 Sum_probs=88.7
Q ss_pred CcccchHHHHHHHhhCHHHHHHHHhh----CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC---CcHHHHHHHHHH
Q psy3800 1 MVWREIIDGAIHRAAGPQLKEECRTL----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG---EKPALLKSAYQR 73 (133)
Q Consensus 1 ~~~~ggVs~AI~~aaG~~l~~ec~~~----~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~---~~~~~L~~~y~~ 73 (133)
|..+|||++||+++||++|++||+++ +++++|++++|++|+||| |||||+|||.| +++++|++||++
T Consensus 45 L~~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~~~iT~a~~Lp~------k~VIHtVgP~~~~~~~~~~L~~~~~~ 118 (186)
T cd02904 45 IDLKGEVGNALEKKGGKEFVEAVKELRKSNGPLEIAGAAVSQAHGLPA------KFVIHCHSPQWGSDKCEEQLEKTVKN 118 (186)
T ss_pred cCCCCcHhHHHHHHcCHHHHHHHHHHHHhcCCCCCCCEEEccCCCCCC------CEEEEeCCCCCCCCchHHHHHHHHHH
Confidence 45789999999999999999999765 789999999999999999 99999999999 567899999999
Q ss_pred HHHHHHHCCCcEEEEccccccccchHH
Q psy3800 74 SLEVMKQNNLRSILEVMKQNNLRSIDI 100 (133)
Q Consensus 74 ~L~~A~~~~~~SIAfPaigtG~~g~~~ 100 (133)
||++|++++++|||||+||||++|||.
T Consensus 119 ~L~~A~e~~~~SIAfPaIstG~~g~P~ 145 (186)
T cd02904 119 CLAAAEDKKLKSIAFPSLPSGRNGFPK 145 (186)
T ss_pred HHHHHHHcCCCEEEECCcccCCCCCCH
Confidence 999999999999999999999999983
No 2
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=100.00 E-value=1.4e-33 Score=208.88 Aligned_cols=94 Identities=39% Similarity=0.598 Sum_probs=89.0
Q ss_pred CcccchHHHHHHHhhCHHHHHHHHhhCCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC------CcHHHHHHHHHHH
Q psy3800 1 MVWREIIDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG------EKPALLKSAYQRS 74 (133)
Q Consensus 1 ~~~~ggVs~AI~~aaG~~l~~ec~~~~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~------~~~~~L~~~y~~~ 74 (133)
|..+|||++||+++||++|++||++.+++++|++++|++|+||| |||||+|||.| +.+++|++||+++
T Consensus 26 l~~~ggv~~aI~~aaG~~l~~e~~~~~~~~~G~~~~T~~~~L~~------k~VIH~vgP~~~~~~~~~~~~~L~~~~~~~ 99 (140)
T cd02905 26 LTDKNPISDKIFARAGSELREEIQTLGGCRTGEAKLTKGYNLPA------RFIIHTVGPKYNVKYRTAAENALYSCYRNV 99 (140)
T ss_pred cCCCCcHHHHHHHHhCHHHHHHHHHhCCCCCCcEEEecCCCCCc------cEEEEecCCccCCCCCcHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999 99999999999 2368999999999
Q ss_pred HHHHHHCCCcEEEEccccccccchHH
Q psy3800 75 LEVMKQNNLRSILEVMKQNNLRSIDI 100 (133)
Q Consensus 75 L~~A~~~~~~SIAfPaigtG~~g~~~ 100 (133)
|++|++++++|||||+||||++|||.
T Consensus 100 L~~a~~~~~~SIAfPai~tG~~gfP~ 125 (140)
T cd02905 100 LQLAKELGLESIALCVISSEKRNYPP 125 (140)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCH
Confidence 99999999999999999999999983
No 3
>PRK04143 hypothetical protein; Provisional
Probab=99.97 E-value=1.6e-30 Score=210.16 Aligned_cols=91 Identities=41% Similarity=0.581 Sum_probs=85.2
Q ss_pred ccchHHHHHHHhhCHHHHHHHHhh-----CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC-------CcHHHHHHH
Q psy3800 3 WREIIDGAIHRAAGPQLKEECRTL-----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG-------EKPALLKSA 70 (133)
Q Consensus 3 ~~ggVs~AI~~aaG~~l~~ec~~~-----~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~-------~~~~~L~~~ 70 (133)
..|||++|||++||++|++||+++ +.+++|++++|+||+||| +||||+|||.| ++.++|++|
T Consensus 115 ~~ggId~aI~~aAG~~L~~eC~~~~~~~g~~~~~G~a~iT~~~nLp~------kyVIHtVgP~~~~g~~~~~~~~~L~~c 188 (264)
T PRK04143 115 NHDCIDNAIHTFAGVQLRLDCAEIMTEQGRKEATGQAKITRAYNLPA------KYVIHTVGPIIRKQPVSPIRADLLASC 188 (264)
T ss_pred CCCcHHHHHHHHhChHHHHHHHHHHHHcCCCCCCceEEEecCCCCCC------CEEEEECCCcccCCCCCcchHHHHHHH
Confidence 358999999999999999999875 468999999999999999 99999999998 247899999
Q ss_pred HHHHHHHHHHCCCcEEEEccccccccchH
Q psy3800 71 YQRSLEVMKQNNLRSILEVMKQNNLRSID 99 (133)
Q Consensus 71 y~~~L~~A~~~~~~SIAfPaigtG~~g~~ 99 (133)
|++||++|++++++|||||+||||+||||
T Consensus 189 y~s~L~~A~~~~~kSIAfP~IsTGi~gfP 217 (264)
T PRK04143 189 YRSCLKLAEKAGLKSIAFCCISTGVFGFP 217 (264)
T ss_pred HHHHHHHHHHcCCCEEEeccccCCCCCCC
Confidence 99999999999999999999999999998
No 4
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=99.97 E-value=1.9e-30 Score=193.23 Aligned_cols=94 Identities=41% Similarity=0.582 Sum_probs=86.5
Q ss_pred ccchHHHHHHHhhCHHHHHHHHhh-----CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC-------CcHHHHHHH
Q psy3800 3 WREIIDGAIHRAAGPQLKEECRTL-----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG-------EKPALLKSA 70 (133)
Q Consensus 3 ~~ggVs~AI~~aaG~~l~~ec~~~-----~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~-------~~~~~L~~~ 70 (133)
+.|||++||++++||+|++||+++ +.+++|++++|++|+||| +||||+|||.| ++.+.|++|
T Consensus 32 ~~ggv~~aI~~~aG~~l~~e~~~~~~~~g~~~~~G~a~~T~~~~L~~------k~VIHavgP~~~~~~~~~~~~~~L~~~ 105 (147)
T cd02906 32 LHRCIDNIIHTFAGPQLRQACFELMTKQGREEPTGQAKITPGYNLPA------KYVIHTVGPIIERGLTTPIHRDLLAKC 105 (147)
T ss_pred CCCcHHHHHHHHhCHHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCC------CEEEEECCCcccCCCCCccHHHHHHHH
Confidence 468999999999999999999875 368999999999999999 99999999999 246899999
Q ss_pred HHHHHHHHHHCCCcEEEEccccccccchHHHh
Q psy3800 71 YQRSLEVMKQNNLRSILEVMKQNNLRSIDILK 102 (133)
Q Consensus 71 y~~~L~~A~~~~~~SIAfPaigtG~~g~~~~~ 102 (133)
|+++|+.|++++++|||||+||||++|||..+
T Consensus 106 ~~~~L~~a~~~~~~sIA~P~i~tG~~g~p~~~ 137 (147)
T cd02906 106 YLSCLDLAEKAGLKSIAFCCISTGLFGFPQEE 137 (147)
T ss_pred HHHHHHHHHHcCCCEEEECcccccCCCCCHHH
Confidence 99999999999999999999999999998433
No 5
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=99.97 E-value=4.6e-30 Score=193.27 Aligned_cols=95 Identities=53% Similarity=0.792 Sum_probs=89.9
Q ss_pred CcccchHHHHHHHhhCHHHHHHHHhhCCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC-----CcHHHHHHHHHHHH
Q psy3800 1 MVWREIIDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG-----EKPALLKSAYQRSL 75 (133)
Q Consensus 1 ~~~~ggVs~AI~~aaG~~l~~ec~~~~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~-----~~~~~L~~~y~~~L 75 (133)
+..+|||++||++++|++|++||++.+++++|++++|++|+|+| +||||+|||.| ++.+.|++||+++|
T Consensus 25 l~~~ggv~~ai~~~~G~~l~~e~~~~~~~~~G~~v~T~~~~l~~------~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L 98 (165)
T cd02908 25 LLGGGGVDGAIHRAAGPELLEECRELRGCPTGEAVITSGYNLPA------KYVIHTVGPVWRGGQHNEAELLASCYRNSL 98 (165)
T ss_pred ccCCCcHHHHHHHHhCHHHHHHHHHhCCCCCCCEEEeeCCCCCC------CEEEEEcCCcccCCCCcHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999 99999999999 35799999999999
Q ss_pred HHHHHCCCcEEEEccccccccchHHH
Q psy3800 76 EVMKQNNLRSILEVMKQNNLRSIDIL 101 (133)
Q Consensus 76 ~~A~~~~~~SIAfPaigtG~~g~~~~ 101 (133)
+.|.+++++|||||+||||++|+|..
T Consensus 99 ~~a~~~~~~sIa~P~igtG~~g~p~~ 124 (165)
T cd02908 99 ELARENGLRSIAFPAISTGVYGYPLD 124 (165)
T ss_pred HHHHHcCCCEEEECceecCCCCCCHH
Confidence 99999999999999999999999843
No 6
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=99.96 E-value=8e-29 Score=181.86 Aligned_cols=96 Identities=26% Similarity=0.210 Sum_probs=88.2
Q ss_pred ccchHHHHHHHhhCHHHHHHHHhhCCCC-CCcEEEccCCCCCCCCCCCCceEEEeeCCCCC--cHHHHHHHHHHHHHHHH
Q psy3800 3 WREIIDGAIHRAAGPQLKEECRTLNGCE-TGDAKITAGYNLPAKLPINAKHVIHTVGPVGE--KPALLKSAYQRSLEVMK 79 (133)
Q Consensus 3 ~~ggVs~AI~~aaG~~l~~ec~~~~~~~-~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~~--~~~~L~~~y~~~L~~A~ 79 (133)
..|||+++|++++|+++++||++...++ +|++++|++|+||| |||||+++|.|. +.+.|+++|++||+.|+
T Consensus 29 ~~ggv~~aI~~~~G~~l~~~~~~~~~~~~~G~~~vT~~~~L~~------k~IiH~~~p~~~~~~~~~l~~~~~~~L~~a~ 102 (137)
T cd02903 29 LKGGVSKAILRKAGPELQKELDKAKLGQTVGSVIVTKGGNLPC------KYVYHVVLPNWSNGALKILKDIVSECLEKCE 102 (137)
T ss_pred CCCCHHHHHHHhccHHHHHHHHHHcCCCCCCeEEEecCCCCCC------CEEEEecCCCCCCchHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999987777 59999999999999 999999999993 46899999999999999
Q ss_pred HCCCcEEEEccccccccchHHHhhh
Q psy3800 80 QNNLRSILEVMKQNNLRSIDILKGR 104 (133)
Q Consensus 80 ~~~~~SIAfPaigtG~~g~~~~~~~ 104 (133)
+++++|||||+||||++|+|..+.+
T Consensus 103 ~~~~~SIAfP~igtG~~g~p~~~~A 127 (137)
T cd02903 103 ELSYTSISFPAIGTGNLGFPKDVVA 127 (137)
T ss_pred HCCCcEEEECCCcCcCCCCCHHHHH
Confidence 9999999999999999999854444
No 7
>PRK00431 RNase III inhibitor; Provisional
Probab=99.96 E-value=9.2e-29 Score=187.69 Aligned_cols=98 Identities=45% Similarity=0.627 Sum_probs=90.5
Q ss_pred cccchHHHHHHHhhCHHHHHHHHhh----CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC-----CcHHHHHHHHH
Q psy3800 2 VWREIIDGAIHRAAGPQLKEECRTL----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG-----EKPALLKSAYQ 72 (133)
Q Consensus 2 ~~~ggVs~AI~~aaG~~l~~ec~~~----~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~-----~~~~~L~~~y~ 72 (133)
..+|||++||++++|+++++||++. +++++|++++|++|+|++ +||||+|+|.| .+.+.|++||+
T Consensus 29 ~~~ggva~aI~~~~G~~l~~e~~~~~~~~~~l~~G~~~~T~~~~l~~------~~IiH~v~P~~~~~~~~~~~~L~~~~~ 102 (177)
T PRK00431 29 LGGGGVDGAIHRAAGPEILEECRELRQQQGPCPTGEAVITSAGRLPA------KYVIHTVGPVWRGGEDNEAELLASAYR 102 (177)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCCCC------CEEEEecCCeecCCCCcHHHHHHHHHH
Confidence 4679999999999999999999887 899999999999999999 99999999999 24689999999
Q ss_pred HHHHHHHHCCCcEEEEccccccccchHHHhhhh
Q psy3800 73 RSLEVMKQNNLRSILEVMKQNNLRSIDILKGRQ 105 (133)
Q Consensus 73 ~~L~~A~~~~~~SIAfPaigtG~~g~~~~~~~~ 105 (133)
++|+.|++++++|||||+||||++|+|....+.
T Consensus 103 ~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~A~ 135 (177)
T PRK00431 103 NSLRLAAELGLRSIAFPAISTGVYGYPLEDAAR 135 (177)
T ss_pred HHHHHHHHcCCceEEECccccCccCCCHHHHHH
Confidence 999999999999999999999999999555443
No 8
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=99.96 E-value=2.4e-28 Score=185.25 Aligned_cols=96 Identities=30% Similarity=0.350 Sum_probs=88.6
Q ss_pred CcccchHHHHHHHhhCHHHHHHHHhh----CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC------CcHHHHHHH
Q psy3800 1 MVWREIIDGAIHRAAGPQLKEECRTL----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG------EKPALLKSA 70 (133)
Q Consensus 1 ~~~~ggVs~AI~~aaG~~l~~ec~~~----~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~------~~~~~L~~~ 70 (133)
|..+|||+++|++++|+++++||++. +++++|++++|++|+||| |||||+|+|.| ++.+.|++|
T Consensus 27 ~~~~ggv~~ai~~~~G~~l~~e~~~~~~~~g~~~~G~~~~T~~~~L~~------k~IiH~v~P~~~~~~~~~~~~~L~~~ 100 (175)
T cd02907 27 LKHGGGLALAIVKAGGPEIQEESDEYVRKNGPVPTGEVVVTSAGKLPC------KYVIHAVGPRWSGGEAEECVEKLKKA 100 (175)
T ss_pred cCCCCCHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCcEEEecCCCCCC------CEEEEeCCCcCCCCCCchHHHHHHHH
Confidence 34689999999999999999999764 899999999999999999 99999999999 246899999
Q ss_pred HHHHHHHHHHCCCcEEEEccccccccchHHHh
Q psy3800 71 YQRSLEVMKQNNLRSILEVMKQNNLRSIDILK 102 (133)
Q Consensus 71 y~~~L~~A~~~~~~SIAfPaigtG~~g~~~~~ 102 (133)
|++||+.|.+++++|||||+||||++|+|..+
T Consensus 101 ~~~~L~~a~~~~~~SIA~P~lgtG~~g~p~~~ 132 (175)
T cd02907 101 ILNSLRKAEELGLRSIAIPAISSGIFGFPLER 132 (175)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCHHH
Confidence 99999999999999999999999999998443
No 9
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]
Probab=99.94 E-value=4.4e-27 Score=180.88 Aligned_cols=95 Identities=39% Similarity=0.566 Sum_probs=87.2
Q ss_pred cccchHHHHHHHhhCHHHHHHHHhh------CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC-----CcHHHHHHH
Q psy3800 2 VWREIIDGAIHRAAGPQLKEECRTL------NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG-----EKPALLKSA 70 (133)
Q Consensus 2 ~~~ggVs~AI~~aaG~~l~~ec~~~------~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~-----~~~~~L~~~ 70 (133)
.++|||+.||++++||++++||+.. .+.++|++++|++|+|+. +||||+|||.| ...+.|..|
T Consensus 29 ~~gGGVd~AI~~~~g~~l~~~~~~~~~~~~~~~~~~G~Avit~~~~l~a------~~ViH~vgp~~~~g~~~~~e~l~~a 102 (179)
T COG2110 29 LGGGGVAGAIHRAAGPQLEEECAEIAPKRGGGRIPVGEAVITEAGRLPA------KYVIHTVGPSWRGGSKDEAELLAAA 102 (179)
T ss_pred CCCCcHHHHHHHHhhHHHHHHHHHHhhhhcCCCCCceEEEEccCcCCCC------CEEEecCCCcccCCChhHHHHHHHH
Confidence 5789999999999999999999876 237779999999999999 99999999998 556799999
Q ss_pred HHHHHHHHHHCCCcEEEEccccccccchHHHh
Q psy3800 71 YQRSLEVMKQNNLRSILEVMKQNNLRSIDILK 102 (133)
Q Consensus 71 y~~~L~~A~~~~~~SIAfPaigtG~~g~~~~~ 102 (133)
|+++|++|++++++|||||+||||++|+|...
T Consensus 103 ~~~~l~~a~~~g~~SiAfPaistGv~G~p~~~ 134 (179)
T COG2110 103 YRAALRLAKEAGVRSVAFPAISTGVYGFPLEE 134 (179)
T ss_pred HHHHHHHHHHcCCceeecccccCcccCCCHHH
Confidence 99999999999999999999999999998433
No 10
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=99.94 E-value=1.5e-26 Score=168.00 Aligned_cols=96 Identities=21% Similarity=0.243 Sum_probs=89.9
Q ss_pred CcccchHHHHHHHhhCHHHHHHHHhhCCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC---CcHHHHHHHHHHHHHH
Q psy3800 1 MVWREIIDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG---EKPALLKSAYQRSLEV 77 (133)
Q Consensus 1 ~~~~ggVs~AI~~aaG~~l~~ec~~~~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~---~~~~~L~~~y~~~L~~ 77 (133)
|.+++||+++|++++|+++++||++.+++++|++++|++++||| |||||+++|.+ .+.+.|++||+++|+.
T Consensus 25 ~~~g~Gva~ai~~~~G~~~~~~~~~~~~~~~G~~~~t~~~~l~~------k~Iih~~~~~~~~~~~~~~l~~~~~~~l~~ 98 (133)
T cd03330 25 LRMGGGVAGAIKRAGGSVIEREAVRKAPIPVGEAVITGAGDLPA------RYVIHAATMEEPGRSSEESVRKATRAALAL 98 (133)
T ss_pred CCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCCeEEEEeCCCCCC------CEEEEeCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999 99999999975 5778999999999999
Q ss_pred HHHCCCcEEEEccccccccchHHHh
Q psy3800 78 MKQNNLRSILEVMKQNNLRSIDILK 102 (133)
Q Consensus 78 A~~~~~~SIAfPaigtG~~g~~~~~ 102 (133)
|++++++|||||+||||.+|+|..+
T Consensus 99 a~~~~~~sIA~P~igtG~~g~~~~~ 123 (133)
T cd03330 99 ADELGIESVAFPAMGTGVGGLPKED 123 (133)
T ss_pred HHHcCCCEEEECcccccCCCCCHHH
Confidence 9999999999999999999998433
No 11
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=99.94 E-value=2.8e-26 Score=160.61 Aligned_cols=97 Identities=31% Similarity=0.466 Sum_probs=90.3
Q ss_pred CcccchHHHHHHHhhCHHHHHHHHhh----CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC------CcHHHHHHH
Q psy3800 1 MVWREIIDGAIHRAAGPQLKEECRTL----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG------EKPALLKSA 70 (133)
Q Consensus 1 ~~~~ggVs~AI~~aaG~~l~~ec~~~----~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~------~~~~~L~~~ 70 (133)
+.+++||+++|++++|++++++|++. +++++|++++|++++|++ +||||+|+|.| .+.+.|+++
T Consensus 8 ~~~g~Gva~ai~~~~g~~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~~------~~Iih~v~P~~~~~~~~~~~~~L~~~ 81 (118)
T PF01661_consen 8 LSMGGGVAKAIFKAAGPALQEECKEIKKKGGELPVGEVIVTPGGNLPC------KYIIHAVGPTYNSPGEKNSYEALESA 81 (118)
T ss_dssp SSBSSHHHHHHHHHHTHHHHHHHHHHHHHHHSSSTTSEEEEEETTSSS------SEEEEEEEEETTTSTSTTHHHHHHHH
T ss_pred CCCCchHHHHHHHhchHHHHHHHHHhhcccCcccCCCeeeecCCCccc------cceEEEecceeccccccccHHHHHHH
Confidence 35789999999999999999999875 779999999999999999 99999999998 688999999
Q ss_pred HHHHHHHHHHCCCcEEEEccccccccchHHHhh
Q psy3800 71 YQRSLEVMKQNNLRSILEVMKQNNLRSIDILKG 103 (133)
Q Consensus 71 y~~~L~~A~~~~~~SIAfPaigtG~~g~~~~~~ 103 (133)
|+++|+.|++++++||+||+||||++|+|....
T Consensus 82 ~~~~l~~a~~~~~~sIa~P~ig~G~~g~~~~~~ 114 (118)
T PF01661_consen 82 YRNALQKAEENGIKSIAFPAIGTGIGGFPWDEV 114 (118)
T ss_dssp HHHHHHHHHHTTTSEEEEESTTSSTTSBTHHHH
T ss_pred HHHHHHHHHHcCCcccccCcccCCCCCCCHHHH
Confidence 999999999999999999999999999985443
No 12
>KOG2633|consensus
Probab=99.90 E-value=6.3e-24 Score=165.44 Aligned_cols=111 Identities=37% Similarity=0.526 Sum_probs=95.4
Q ss_pred cccchHHHHHHHhhCHHHHHHHHhhCCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC---CcHH--HHHHHHHHHHH
Q psy3800 2 VWREIIDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG---EKPA--LLKSAYQRSLE 76 (133)
Q Consensus 2 ~~~ggVs~AI~~aaG~~l~~ec~~~~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~---~~~~--~L~~~y~~~L~ 76 (133)
.-++|++.+||+++||++.+||.+.+.|++|.+++|.+++||+ |+|||+|||.| ...+ .|..||+++|.
T Consensus 53 ~~g~~~~~ai~~aagp~l~~e~~~~~~c~tG~ak~t~~~~Lpa------k~vIHtvgP~~~~d~~~~~~~L~~~~rs~L~ 126 (200)
T KOG2633|consen 53 LGGKGVDEAIHRAAGPELPLECAYLHGCRTGAAKSTGGYGLPA------KRVIHTVGPRWKEDKLQECYFLHSCYRSCLD 126 (200)
T ss_pred ccCcchhHHHHHhcCCcchHHHHhhcCCCCCeeEecCCCCCce------eEEEEecCchhhccchHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999889999999999999999 99999999999 2223 59999999999
Q ss_pred HHHHCCCcEEEEccccccccchHHHhhhhhhHHHHHhhhhhhhhhhhc
Q psy3800 77 VMKQNNLRSILEVMKQNNLRSIDILKGRQQKWRYRLCMTFSRNILIRG 124 (133)
Q Consensus 77 ~A~~~~~~SIAfPaigtG~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (133)
+|.++.++|||||+|+||.+||| .+. +...-++++|.++..+
T Consensus 127 la~~~~ls~iAf~~I~sg~~gyP--~e~----aa~~~l~ti~~~f~~~ 168 (200)
T KOG2633|consen 127 LAIEKLLSSIAFPKISSGRVGYP--WED----AAKIELETIRVFFVKN 168 (200)
T ss_pred HHHHhccceeeeeeeeccccCcc--HHH----HHHHHHHHHHHHHhhC
Confidence 99999999999999999999998 443 3344455666655444
No 13
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=99.88 E-value=2.9e-22 Score=154.93 Aligned_cols=103 Identities=12% Similarity=0.004 Sum_probs=85.9
Q ss_pred cccchHHHHHHHhhC-HHHHHHHHhh------CCCCCCcEEEccCCCCCC----CCCCCCceEEEeeC---C-CC-CcHH
Q psy3800 2 VWREIIDGAIHRAAG-PQLKEECRTL------NGCETGDAKITAGYNLPA----KLPINAKHVIHTVG---P-VG-EKPA 65 (133)
Q Consensus 2 ~~~ggVs~AI~~aaG-~~l~~ec~~~------~~~~~G~~viT~~~~L~~----~~~~~~k~IIH~Vg---P-~~-~~~~ 65 (133)
.++|||++||++++| ++|+++|++. +.+++|++++|++++|+. ....+++||||+++ | .+ .+.+
T Consensus 55 ~mgGGvD~AI~~~~G~~~le~~~q~~~~~~~~g~lpvG~a~it~~~~l~~~~~~~~~~~~~~iIHaPtm~~P~~~~~~~~ 134 (186)
T cd02900 55 YLDGGFDLAIRNFFGGKPLETWVQNQLLRKYLGYLPVGSATVVPLGRALLEKTIYCRWGIPYLIHAPTMRVPSPVITGTE 134 (186)
T ss_pred CCCCcHHHHHHHHcChHHHHHHHHHHHHHhcCCCCCCCcEEEecCCCCccccccccccCCCEEEEcCcccCCCCCCCcHH
Confidence 468999999999999 7899998653 899999999999999990 00001299999986 5 33 6778
Q ss_pred HHHHHHHHHHHHHHHC--CCcEEEEccccccccchHHHhhh
Q psy3800 66 LLKSAYQRSLEVMKQN--NLRSILEVMKQNNLRSIDILKGR 104 (133)
Q Consensus 66 ~L~~~y~~~L~~A~~~--~~~SIAfPaigtG~~g~~~~~~~ 104 (133)
.|++||+++|+.|+++ +++|||||+||||.+|+|..+.+
T Consensus 135 ~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGvgg~p~~~aA 175 (186)
T cd02900 135 PVFDAMWNALNAIPKENQEINTLVLPGLGTGYGGVPPEIAA 175 (186)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEECchhcCCCCCCHHHHH
Confidence 9999999999999987 89999999999999999954444
No 14
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=99.87 E-value=9.8e-22 Score=140.57 Aligned_cols=96 Identities=38% Similarity=0.512 Sum_probs=86.0
Q ss_pred cccchHHHHHHHhhCHHH-HHHHHhh--CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC-----CcHHHHHHHHHH
Q psy3800 2 VWREIIDGAIHRAAGPQL-KEECRTL--NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG-----EKPALLKSAYQR 73 (133)
Q Consensus 2 ~~~ggVs~AI~~aaG~~l-~~ec~~~--~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~-----~~~~~L~~~y~~ 73 (133)
.++||++++|++++|+++ ++++++. +.+++|++++|+++++++ +||||+++|.| .+.+.|++||++
T Consensus 26 ~~~~g~a~~i~~~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~------~~Iih~~~p~~~~~~~~~~~~l~~~~~~ 99 (133)
T smart00506 26 AHGGGVAGAIARAAGKALEKEAFRKLAGGECPVGTAVVTEGGNLPA------KYVIHAVGPRASGHSNEGFELLENAYRN 99 (133)
T ss_pred CCCCcHHHHHHHHhChHHHHHHHHHhcCCCcCCccEEEecCCCCCC------CEEEEeCCCCCCCCCccHHHHHHHHHHH
Confidence 578999999999999996 6666655 379999999999999999 99999999998 356899999999
Q ss_pred HHHHHHHCCCcEEEEccccccccchHHHhh
Q psy3800 74 SLEVMKQNNLRSILEVMKQNNLRSIDILKG 103 (133)
Q Consensus 74 ~L~~A~~~~~~SIAfPaigtG~~g~~~~~~ 103 (133)
+|+.|.+++++|||||+||||.+|+|..+.
T Consensus 100 ~l~~~~~~~~~sIa~P~igtG~~g~~~~~~ 129 (133)
T smart00506 100 CLELAIELGITSVAIPLIGTGIYGVPKDRS 129 (133)
T ss_pred HHHHHHHcCCCEEEECCccCCCCCCCHHHH
Confidence 999999999999999999999999985443
No 15
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.
Probab=99.86 E-value=4.2e-21 Score=139.82 Aligned_cols=92 Identities=33% Similarity=0.434 Sum_probs=85.0
Q ss_pred cccchHHHHHHHhhCHHHHHHHHhhCC---CCCCcEEEccCCCCC-CCCCCCCceEEEeeCCCC-C-----cHHHHHHHH
Q psy3800 2 VWREIIDGAIHRAAGPQLKEECRTLNG---CETGDAKITAGYNLP-AKLPINAKHVIHTVGPVG-E-----KPALLKSAY 71 (133)
Q Consensus 2 ~~~ggVs~AI~~aaG~~l~~ec~~~~~---~~~G~~viT~~~~L~-~~~~~~~k~IIH~VgP~~-~-----~~~~L~~~y 71 (133)
.+++|++.+|++++|+++++|+++..+ +++|++++|++++++ + +||||+++|.| . +.+.|++||
T Consensus 27 ~~g~gi~~ai~~~~g~~~~~~~~~~~~~~~~~~G~~~~t~~~~~~~~------~~vih~~~p~~~~~~~~~~~~~l~~a~ 100 (147)
T cd02749 27 RDGGGVNLAISKKAGKELEEESKKLRKELELQVGEAVLTKGYNLDGA------KYLIHIVGPKYNQGNNKAAFELLKNAY 100 (147)
T ss_pred CCCChHHHHHHHHhCHHHHHHHHHHhcccCCCCCCEEECcCCCCCcC------CEEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 478999999999999999999988633 689999999999998 8 99999999998 1 468999999
Q ss_pred HHHHHHHHHCCCcEEEEccccccccchH
Q psy3800 72 QRSLEVMKQNNLRSILEVMKQNNLRSID 99 (133)
Q Consensus 72 ~~~L~~A~~~~~~SIAfPaigtG~~g~~ 99 (133)
+++|+.|.+++++|||||.||||.+|++
T Consensus 101 ~~~L~~~~~~~~~sIa~P~igtG~~g~~ 128 (147)
T cd02749 101 ENCLKEAEEKGIKSIAFPLIGTGPAGFP 128 (147)
T ss_pred HHHHHHHHHcCCCEEEECCcccccCCCC
Confidence 9999999999999999999999999994
No 16
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.83 E-value=2.9e-22 Score=180.17 Aligned_cols=94 Identities=21% Similarity=0.148 Sum_probs=87.4
Q ss_pred CcccchHHHHHHHhhCHHH---HHHHHh------------------------------------hCCCCCCcEEEc----
Q psy3800 1 MVWREIIDGAIHRAAGPQL---KEECRT------------------------------------LNGCETGDAKIT---- 37 (133)
Q Consensus 1 ~~~~ggVs~AI~~aaG~~l---~~ec~~------------------------------------~~~~~~G~~viT---- 37 (133)
++++|||++||+++||+++ ++||++ ++++++|++++|
T Consensus 504 ll~~~g~~~ai~~~~g~~~~~~~~~~~~~~~~~~~l~~~~rp~~~~~~~~~~~~l~~~~~f~~~~g~~~~g~a~~T~~~~ 583 (725)
T PRK13341 504 LLWALGPLRAVPEGGVTVLCSSQEDSDRLVAQLELLDPLERPVLLDGSLEALKTLPANLQFEWIGGRLPTGDAVVTKELW 583 (725)
T ss_pred chhhhhHHHhccCCCeEEecCCHHHHHHHHHHHhhcchhhCccccccchhhhhhcCcccceeeeeccCcccchhhHHHHH
Confidence 4689999999999999999 888865 489999999999
Q ss_pred --------cCCCCCCCCCCCCceEEEeeCCCC---CcHHHHHHHHHHHHHHHHHCCCc----------EEEEcccccccc
Q psy3800 38 --------AGYNLPAKLPINAKHVIHTVGPVG---EKPALLKSAYQRSLEVMKQNNLR----------SILEVMKQNNLR 96 (133)
Q Consensus 38 --------~~~~L~~~~~~~~k~IIH~VgP~~---~~~~~L~~~y~~~L~~A~~~~~~----------SIAfPaigtG~~ 96 (133)
++|+|++ +||||+|||.| ...+.|.+||+++|+.|++++++ |||||+||||+|
T Consensus 584 ~~l~~~~~~~g~L~~------~~vIh~vGp~~~~~~~~~~l~~~~~~~L~~Aee~~~~~~~~~~~~~~sia~p~istgv~ 657 (725)
T PRK13341 584 QQLTEKLTPAGKLKL------LYSIPAVGPAWALLSEDELLYKALYSALLEAEELWLKLQWDQSLLQQSLEMPGWSTGIE 657 (725)
T ss_pred HHHHHhcCCCCeeEE------EEeccccChHhhhcCccchhHHHHHHHHHHHHHHhcccccchhHHHHHHHhcCCcccee
Confidence 9999999 99999999999 44679999999999999999999 999999999999
Q ss_pred chHH
Q psy3800 97 SIDI 100 (133)
Q Consensus 97 g~~~ 100 (133)
|||.
T Consensus 658 ~~p~ 661 (725)
T PRK13341 658 QWPE 661 (725)
T ss_pred cCCc
Confidence 9984
No 17
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=99.65 E-value=1.8e-15 Score=110.27 Aligned_cols=93 Identities=13% Similarity=0.125 Sum_probs=77.4
Q ss_pred cccchHHHHHHHh--hC-HHHHHHHHhhCCCCCCc-EEEccCCCCCCCCCCCCceEEEeeCCCC----CcHHHHHHHHHH
Q psy3800 2 VWREIIDGAIHRA--AG-PQLKEECRTLNGCETGD-AKITAGYNLPAKLPINAKHVIHTVGPVG----EKPALLKSAYQR 73 (133)
Q Consensus 2 ~~~ggVs~AI~~a--aG-~~l~~ec~~~~~~~~G~-~viT~~~~L~~~~~~~~k~IIH~VgP~~----~~~~~L~~~y~~ 73 (133)
.|++|++.+|.++ .+ .++++.|++... ..|+ ++++.++++++ ++|+|+++|.+ .+.+.|++++++
T Consensus 27 ~mG~Gia~~i~~~~p~~~~~~~~~~~~~~~-~~G~~~~~~~~~~~~~------~~I~~~~t~~~~~~~~~~~~l~~~l~~ 99 (140)
T cd02901 27 VMGKGIALQFKEKFPEFVEEYRAACKKKEL-LLGGVAVLERGSSLVS------RYIYNLPTKVHYGPKSRYEAIEKSLRE 99 (140)
T ss_pred ccChHHHHHHHHHCcHHHHHHHHHHHhcCC-CCCcEEEEecCCCCCc------eEEEEeeccCCCCCCCcHHHHHHHHHH
Confidence 5889999999997 33 356666776544 4555 55567888888 99999999976 567899999999
Q ss_pred HHHHHHHCCCcEEEEccccccccchHHH
Q psy3800 74 SLEVMKQNNLRSILEVMKQNNLRSIDIL 101 (133)
Q Consensus 74 ~L~~A~~~~~~SIAfPaigtG~~g~~~~ 101 (133)
+++.|++++++|||||.||+|.+|+|..
T Consensus 100 ~~~~a~~~~~~sva~P~iG~G~~G~~w~ 127 (140)
T cd02901 100 LRAHARDNGIKSVAMPRIGCGLGGLDWE 127 (140)
T ss_pred HHHHHHHcCCCEEeeCCCCCcCCCCCHH
Confidence 9999999999999999999999999843
No 18
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=99.38 E-value=7.8e-12 Score=93.80 Aligned_cols=91 Identities=12% Similarity=0.002 Sum_probs=76.3
Q ss_pred cccchHHHHHHHhhCHHHHHHHHhh---CCCCCCcEEE-ccCCCCCCCCCCCCceEEEeeCCCC-----CcHHHHHHHHH
Q psy3800 2 VWREIIDGAIHRAAGPQLKEECRTL---NGCETGDAKI-TAGYNLPAKLPINAKHVIHTVGPVG-----EKPALLKSAYQ 72 (133)
Q Consensus 2 ~~~ggVs~AI~~aaG~~l~~ec~~~---~~~~~G~~vi-T~~~~L~~~~~~~~k~IIH~VgP~~-----~~~~~L~~~y~ 72 (133)
+|++|||.+|.++.+ ++.++.++. ++.+.|++.+ |++++.+. +||+|..+- | .+.+.|+++++
T Consensus 30 ~mG~GIA~~~k~~~P-~~~~~y~~~~~~~~~~lG~~~~~~~~~~~~~------~~I~nl~tq-~~~~~~~~y~ai~~~l~ 101 (154)
T PHA02595 30 TMGSGIAGQLAKAFP-QILEADKLTTEGDVEKLGTFSVWEKYVGGHK------AYCFNLYTQ-FDPGPNLEYSALMNCFE 101 (154)
T ss_pred cCChHHHHHHHHHcC-hHHHHHHHHhcCCccccceEEEEEeeccCCC------EEEEEEecc-CCCCCCCcHHHHHHHHH
Confidence 689999999999995 677766554 5678999965 66777776 999999765 5 34567999999
Q ss_pred HHHHHHHHCCC-cEEEEccccccccchHH
Q psy3800 73 RSLEVMKQNNL-RSILEVMKQNNLRSIDI 100 (133)
Q Consensus 73 ~~L~~A~~~~~-~SIAfPaigtG~~g~~~ 100 (133)
+..+.+++++. +|||||.||+|++|.|-
T Consensus 102 ~l~~~~~~~~~~~sIa~P~IG~GlgGl~W 130 (154)
T PHA02595 102 ELNEVFEGTLFKPTIYIPRIGAGIAGGDW 130 (154)
T ss_pred HHHHHHHhcCCCcEEeeCCCCccCCCCCH
Confidence 99999999998 99999999999999984
No 19
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A.
Probab=97.54 E-value=0.00047 Score=56.67 Aligned_cols=101 Identities=13% Similarity=0.029 Sum_probs=56.1
Q ss_pred ccchHHHHHHHhhCH-HHHHHHHhh---CCCCCCcEEE--ccCCCCCC--CCCCCCceEEEee---CCC---C-------
Q psy3800 3 WREIIDGAIHRAAGP-QLKEECRTL---NGCETGDAKI--TAGYNLPA--KLPINAKHVIHTV---GPV---G------- 61 (133)
Q Consensus 3 ~~ggVs~AI~~aaG~-~l~~ec~~~---~~~~~G~~vi--T~~~~L~~--~~~~~~k~IIH~V---gP~---~------- 61 (133)
++||.+.||.+.-|. .++.-.++. ...++|++-+ +.-...+. +...+++||+|+= .|. |
T Consensus 82 MgGGFDLai~~~fggk~~E~~~r~~l~~~y~pvGs~tvIdL~~~~~~~~~~~~~~i~yIi~~PTMv~P~~~~~d~~~~~~ 161 (280)
T PF14519_consen 82 MGGGFDLAISEYFGGKPFENWFRAQLGERYHPVGSCTVIDLPKCFEPSSIYNNWGIRYIIHVPTMVVPEKPVWDREVPYE 161 (280)
T ss_dssp --SHHHHHHHHHHTSHHHHHHHHHHTTTS---TT--EEEEGGGGG--------TTEEEEEEEEEES-TTS-S--TT-TTT
T ss_pred CCCchhHHHHHHhCCchhHHHHHHHHhccccCCCeeEEEECchhhhhhhcccccCceEEEECCccccCCCcccchhHHHH
Confidence 589999999999664 455445443 3356776655 33221110 0123679999975 443 3
Q ss_pred CcHHHHHHHHHHHHHHHHHCCCcEEEEccccccccchHHHhhh
Q psy3800 62 EKPALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSIDILKGR 104 (133)
Q Consensus 62 ~~~~~L~~~y~~~L~~A~~~~~~SIAfPaigtG~~g~~~~~~~ 104 (133)
..-+.+.++++|+|..+. ..+.+|.+|.|+||..|.+..+.+
T Consensus 162 t~~~~vfn~~WN~l~~~p-~~IdtLiiPGLgTGyGgV~p~~sA 203 (280)
T PF14519_consen 162 TGWSLVFNAMWNALRHAP-EDIDTLIIPGLGTGYGGVPPEISA 203 (280)
T ss_dssp TTHHHHHHHHHHHHHTS--TT-SEEEE--SSSSTT---HHHHH
T ss_pred HHHHHHHHHHHHhhccCC-CCCCeEEECCcccccCCCCHHHHH
Confidence 234567889999887764 579999999999999999865554
No 20
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=97.45 E-value=0.0022 Score=48.28 Aligned_cols=96 Identities=14% Similarity=0.085 Sum_probs=66.7
Q ss_pred ccc-chHHHHHHHhhC--HHHHHHHHhhCCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC--------CcHHHHHHH
Q psy3800 2 VWR-EIIDGAIHRAAG--PQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG--------EKPALLKSA 70 (133)
Q Consensus 2 ~~~-ggVs~AI~~aaG--~~l~~ec~~~~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~--------~~~~~L~~~ 70 (133)
.|+ ||++.||.++.- ++..++|.+.+.+..|++.+..-..-... ..+-.+|.-.++..+ -+.+.|++|
T Consensus 31 ~WG~gGia~al~~k~p~~~~~Y~~~~~~~dl~LG~~~li~v~~~~~~-~~~~~~va~l~~q~~~~~~~~~~~~~~aL~~~ 109 (152)
T cd03331 31 HWGRGGLFTALEKRSDQPRKAYELAGKMKDLHLGDLHLFPIDDKNSR-LKGPDWVALIVAQHRDKSNPLSGIKLSALEKG 109 (152)
T ss_pred CCCcchHHHHHHHhCCcHHHHHHHHHhcCCCccccEEEEEeccccCC-CCCCeEEEEEEeEccCCCCCCCccCHHHHHHH
Confidence 477 699999999874 23334455556677999888654211110 011268888887765 355778888
Q ss_pred HHHHHHHHHHCCCcEEEEccccccccchH
Q psy3800 71 YQRSLEVMKQNNLRSILEVMKQNNLRSID 99 (133)
Q Consensus 71 y~~~L~~A~~~~~~SIAfPaigtG~~g~~ 99 (133)
+.+.-..|.+ +-.||.+|=|++|.+|.+
T Consensus 110 L~~~~~~a~~-~~~sVhmPrIg~Gl~g~~ 137 (152)
T cd03331 110 LKKIYFAAKQ-KSASVHLPRIGHSTKSFN 137 (152)
T ss_pred HHHHHHHHHc-CCCEEEeCCCCCCCCCCC
Confidence 8888777765 558999999999999986
No 21
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=96.10 E-value=0.035 Score=49.19 Aligned_cols=87 Identities=14% Similarity=0.136 Sum_probs=65.4
Q ss_pred CCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC------CcHHHHHHHHHHHHHHHHHCCCcEEEEccccccccchHHH
Q psy3800 28 GCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG------EKPALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSIDIL 101 (133)
Q Consensus 28 ~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~------~~~~~L~~~y~~~L~~A~~~~~~SIAfPaigtG~~g~~~~ 101 (133)
.+.+||+.||.=.||+. +.-|+|.|.-.- .+..-+-..++|+|+.|.++++.+|.+|.+-+.-..-
T Consensus 371 ~l~~gd~yitrhsnl~~-----~~vvfhlv~d~~~~~~~~~~r~~~~~glrnil~~~~~~~i~t~~iplll~~~~~e--- 442 (510)
T PF10154_consen 371 TLKPGDFYITRHSNLSD-----VHVVFHLVVDDSLRSSNINSRHPIILGLRNILRTASRYDITTLTIPLLLVHEMSE--- 442 (510)
T ss_pred cCCCCceEEecccCccc-----ceEEEEEEecCccccCCCCCcChHHHHHHHHHHHHHHcCCCeeeehhhhcCccch---
Confidence 46899999999999986 678899995432 4556677899999999999999999999999875433
Q ss_pred hhhhhhHHHHHh---hhhhhhhhhh
Q psy3800 102 KGRQQKWRYRLC---MTFSRNILIR 123 (133)
Q Consensus 102 ~~~~~~~~~~~~---~~~~~~~~~~ 123 (133)
+.-..|..+++ +.+++=++..
T Consensus 443 -~mt~~wc~~Raelv~k~vkg~~~e 466 (510)
T PF10154_consen 443 -EMTIPWCLKRAELVFKCVKGFMME 466 (510)
T ss_pred -hccHHHHHHHHHHHHHHHHHHHHH
Confidence 33334655555 4566655544
No 22
>TIGR02452 conserved hypothetical protein TIGR02452. Members of this uncharacterized protein family are found in Streptomyces, Nostoc sp. PCC 7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC 533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distibution that at least suggests lateral gene transfer.
Probab=87.68 E-value=1.6 Score=35.71 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHHHHHHHHCCCcEEEEccccccccchHH
Q psy3800 63 KPALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSIDI 100 (133)
Q Consensus 63 ~~~~L~~~y~~~L~~A~~~~~~SIAfPaigtG~~g~~~ 100 (133)
..+.+++-++..|..|..+|.+++-+-|.|+|.|+-|-
T Consensus 186 ~~~~~k~rm~~vL~ia~~~g~~~LVLGA~GCG~f~N~p 223 (266)
T TIGR02452 186 IPMTLKNRMYKVLNIAEDQNIDALVLGAWGCGVFGNDP 223 (266)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEECCccccccCCCH
Confidence 45789999999999999999999999999999999974
No 23
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=72.42 E-value=13 Score=30.71 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=39.8
Q ss_pred CcHHHHHHHHHHHHHHHHHCCCcEEEE-----------ccccccccchHHHhhhhhhHHHHHhhhhhhhhhhhcCEeeec
Q psy3800 62 EKPALLKSAYQRSLEVMKQNNLRSILE-----------VMKQNNLRSIDILKGRQQKWRYRLCMTFSRNILIRGQMVMYN 130 (133)
Q Consensus 62 ~~~~~L~~~y~~~L~~A~~~~~~SIAf-----------PaigtG~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (133)
++.+.+.-.|..+.+.|++.++.-+.+ |+++|=+.-+ -..+...++...+.+.. .-++..|||
T Consensus 196 d~~~~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~stnaii---a~~~~~~~~k~~~~~~~---~~~n~~~~~ 269 (291)
T cd01488 196 DDPEHIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVASTNAII---AAACCLEALKIATDCYE---NLNNYLMYN 269 (291)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccCchHHHH---HHHHHHHHHHHHhcccc---CCCceEEEe
Confidence 677889999999999999999887653 6665533111 11111122222222222 126889999
Q ss_pred CCC
Q psy3800 131 GGE 133 (133)
Q Consensus 131 ~~~ 133 (133)
|++
T Consensus 270 g~~ 272 (291)
T cd01488 270 GVD 272 (291)
T ss_pred cCC
Confidence 975
No 24
>PLN02214 cinnamoyl-CoA reductase
Probab=71.74 E-value=13 Score=30.30 Aligned_cols=41 Identities=12% Similarity=0.323 Sum_probs=28.7
Q ss_pred CCceEEEeeCCCCCc-HHHHH---HHHHHHHHHHHHCCCcEEEEc
Q psy3800 49 NAKHVIHTVGPVGEK-PALLK---SAYQRSLEVMKQNNLRSILEV 89 (133)
Q Consensus 49 ~~k~IIH~VgP~~~~-~~~L~---~~y~~~L~~A~~~~~~SIAfP 89 (133)
++++|||+++|.... .+.+. ....+.|+.|.+.+++.|-+-
T Consensus 81 ~~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~ 125 (342)
T PLN02214 81 GCDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVIT 125 (342)
T ss_pred cCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 579999999987632 22232 346678888888898876653
No 25
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=70.57 E-value=9.8 Score=27.50 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=30.1
Q ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHHHHHHCCCcEEEE
Q psy3800 49 NAKHVIHTVGPVGEKPALLKSAYQRSLEVMKQNNLRSILE 88 (133)
Q Consensus 49 ~~k~IIH~VgP~~~~~~~L~~~y~~~L~~A~~~~~~SIAf 88 (133)
+++.|||+++|.+.+ ...+++.++.+++.+.+.+-+
T Consensus 60 ~~d~vi~~~~~~~~~----~~~~~~~~~a~~~~~~~~~v~ 95 (183)
T PF13460_consen 60 GADAVIHAAGPPPKD----VDAAKNIIEAAKKAGVKRVVY 95 (183)
T ss_dssp TSSEEEECCHSTTTH----HHHHHHHHHHHHHTTSSEEEE
T ss_pred hcchhhhhhhhhccc----cccccccccccccccccccee
Confidence 569999999987642 778888999999999988776
No 26
>KOG1502|consensus
Probab=66.95 E-value=12 Score=31.56 Aligned_cols=40 Identities=25% Similarity=0.460 Sum_probs=28.2
Q ss_pred CCceEEEeeCCCC---C--cHHHHHH---HHHHHHHHHHHCC-CcEEEE
Q psy3800 49 NAKHVIHTVGPVG---E--KPALLKS---AYQRSLEVMKQNN-LRSILE 88 (133)
Q Consensus 49 ~~k~IIH~VgP~~---~--~~~~L~~---~y~~~L~~A~~~~-~~SIAf 88 (133)
||+.|+|++.|.. . ..+.+.= -..|.|+.|.+.+ ++.|-+
T Consensus 78 gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~ 126 (327)
T KOG1502|consen 78 GCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVY 126 (327)
T ss_pred CCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEE
Confidence 7899999999965 2 2244444 4457788888777 777766
No 27
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=66.11 E-value=13 Score=30.23 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=31.5
Q ss_pred CCceEEEeeCCCC-----CcH-HHHH---HHHHHHHHHHHHCCCcEEEEccccccccc
Q psy3800 49 NAKHVIHTVGPVG-----EKP-ALLK---SAYQRSLEVMKQNNLRSILEVMKQNNLRS 97 (133)
Q Consensus 49 ~~k~IIH~VgP~~-----~~~-~~L~---~~y~~~L~~A~~~~~~SIAfPaigtG~~g 97 (133)
++++|||.++... +.. ...+ ....+.|+.|.+.+++.+-|+. |+++||
T Consensus 90 ~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~S-S~~vyg 146 (348)
T PRK15181 90 NVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAA-SSSTYG 146 (348)
T ss_pred CCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEee-chHhhC
Confidence 4699999997532 111 1222 3456889999999999888854 334555
No 28
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=65.66 E-value=18 Score=29.07 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=29.2
Q ss_pred CCceEEEeeCCCC--C--cHHHH----HHHHHHHHHHHHHCCCcEEEE
Q psy3800 49 NAKHVIHTVGPVG--E--KPALL----KSAYQRSLEVMKQNNLRSILE 88 (133)
Q Consensus 49 ~~k~IIH~VgP~~--~--~~~~L----~~~y~~~L~~A~~~~~~SIAf 88 (133)
|++.|||++.|.. . ..+.+ -+..++.|+.|.+.+++.+-+
T Consensus 66 g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVy 113 (280)
T PF01073_consen 66 GVDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVY 113 (280)
T ss_pred CCceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 7899999998753 1 22222 256788999999999997765
No 29
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=58.42 E-value=11 Score=26.45 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=33.0
Q ss_pred ceEEEeeCCCC-CcHHHHHHHHHHHHHHHHHCCCcEEEEcc
Q psy3800 51 KHVIHTVGPVG-EKPALLKSAYQRSLEVMKQNNLRSILEVM 90 (133)
Q Consensus 51 k~IIH~VgP~~-~~~~~L~~~y~~~L~~A~~~~~~SIAfPa 90 (133)
-.|.||.-|.+ ...-.=+..+..+|+.|++.+++-|.++.
T Consensus 40 i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~kiiP~Cs 80 (99)
T COG2388 40 IIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKIIPLCS 80 (99)
T ss_pred EEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeEcccch
Confidence 68899999987 44445567888999999999999998876
No 30
>KOG4506|consensus
Probab=48.90 E-value=22 Score=31.27 Aligned_cols=61 Identities=10% Similarity=0.030 Sum_probs=44.2
Q ss_pred CCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC------CcHHHHHHHHHHHHHHHHHCCCcEEEEccccc
Q psy3800 28 GCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG------EKPALLKSAYQRSLEVMKQNNLRSILEVMKQN 93 (133)
Q Consensus 28 ~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~------~~~~~L~~~y~~~L~~A~~~~~~SIAfPaigt 93 (133)
.+-+|++.++...+|.. +..++|.+--.. ++..---.-++|.++.|..+++.+|.+|.+-.
T Consensus 416 nllP~eal~qd~sc~se-----ihiafHL~VDd~lkS~eInaR~P~iaGlRNIiktaar~d~sTIhIPLLLi 482 (598)
T KOG4506|consen 416 NLLPGEALIQDHSCLSE-----IHIAFHLCVDDHLKSGEINARDPAIAGLRNIIKTAARHDISTIHIPLLLI 482 (598)
T ss_pred hcCchhhhhcCccccch-----hheeeEeeehhhhhcCCccCcCcHHHHHHHHHHHHHhcCCceeeeeeEEe
Confidence 46789999988877765 456778774432 22222234578999999999999999999864
No 31
>CHL00194 ycf39 Ycf39; Provisional
Probab=48.23 E-value=47 Score=26.58 Aligned_cols=40 Identities=8% Similarity=0.046 Sum_probs=27.9
Q ss_pred CCceEEEeeCCCCCcH----HHHHHHHHHHHHHHHHCCCcEEEE
Q psy3800 49 NAKHVIHTVGPVGEKP----ALLKSAYQRSLEVMKQNNLRSILE 88 (133)
Q Consensus 49 ~~k~IIH~VgP~~~~~----~~L~~~y~~~L~~A~~~~~~SIAf 88 (133)
|++.|||++++.+... +.=.....+.++.|.+.+++.+-+
T Consensus 64 g~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~ 107 (317)
T CHL00194 64 GVTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIF 107 (317)
T ss_pred CCCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEE
Confidence 6799999987655211 111245578889999999988765
No 32
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=46.39 E-value=48 Score=25.77 Aligned_cols=40 Identities=13% Similarity=0.209 Sum_probs=26.5
Q ss_pred CCceEEEeeCCCC-------CcHHHH---HHHHHHHHHHHHHCCCcEEEE
Q psy3800 49 NAKHVIHTVGPVG-------EKPALL---KSAYQRSLEVMKQNNLRSILE 88 (133)
Q Consensus 49 ~~k~IIH~VgP~~-------~~~~~L---~~~y~~~L~~A~~~~~~SIAf 88 (133)
++++|||++++.- ...+.. .....+.|+.|.+.+++.+-+
T Consensus 49 ~~d~Vih~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~ 98 (306)
T PLN02725 49 KPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLF 98 (306)
T ss_pred CCCEEEEeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEE
Confidence 3589999997521 111222 224667888899999887777
No 33
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=42.77 E-value=82 Score=24.74 Aligned_cols=40 Identities=18% Similarity=0.327 Sum_probs=25.8
Q ss_pred CCceEEEeeCCCC---CcH--HHHH---HHHHHHHHHHHHC-CCcEEEE
Q psy3800 49 NAKHVIHTVGPVG---EKP--ALLK---SAYQRSLEVMKQN-NLRSILE 88 (133)
Q Consensus 49 ~~k~IIH~VgP~~---~~~--~~L~---~~y~~~L~~A~~~-~~~SIAf 88 (133)
++++|||.++|.. ... +.++ ....+.|+.|.+. +++.+.+
T Consensus 76 ~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~ 124 (322)
T PLN02662 76 GCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVV 124 (322)
T ss_pred CCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 4699999999853 221 2222 3445677777766 8887765
No 34
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=42.75 E-value=62 Score=27.18 Aligned_cols=39 Identities=10% Similarity=0.088 Sum_probs=26.9
Q ss_pred CceEEEeeCCCC----CcHHHHHHHHHHHHHHHHHCCCcEEEE
Q psy3800 50 AKHVIHTVGPVG----EKPALLKSAYQRSLEVMKQNNLRSILE 88 (133)
Q Consensus 50 ~k~IIH~VgP~~----~~~~~L~~~y~~~L~~A~~~~~~SIAf 88 (133)
++.|||++++.. +..+.-.....++++.|.+.+++.+.+
T Consensus 137 ~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~ 179 (390)
T PLN02657 137 VDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVL 179 (390)
T ss_pred CcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEE
Confidence 599999987643 111222345678899999999887655
No 35
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=41.86 E-value=77 Score=25.12 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=25.5
Q ss_pred CCceEEEeeCCCC---CcH--HHHH---HHHHHHHHHHHHC-CCcEEEE
Q psy3800 49 NAKHVIHTVGPVG---EKP--ALLK---SAYQRSLEVMKQN-NLRSILE 88 (133)
Q Consensus 49 ~~k~IIH~VgP~~---~~~--~~L~---~~y~~~L~~A~~~-~~~SIAf 88 (133)
++++|||.++|.. .+. +.+. ....+.|+.|.+. +++.|-+
T Consensus 77 ~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~ 125 (322)
T PLN02986 77 GCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVIL 125 (322)
T ss_pred CCCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEE
Confidence 5699999999853 111 2233 3345677777775 6777766
No 36
>PLN02778 3,5-epimerase/4-reductase
Probab=41.49 E-value=56 Score=26.20 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=26.0
Q ss_pred CCceEEEeeCCC------C---CcHHHH---HHHHHHHHHHHHHCCCcEEEE
Q psy3800 49 NAKHVIHTVGPV------G---EKPALL---KSAYQRSLEVMKQNNLRSILE 88 (133)
Q Consensus 49 ~~k~IIH~VgP~------~---~~~~~L---~~~y~~~L~~A~~~~~~SIAf 88 (133)
++++|||++++. | +..+.+ -....+.|+.|.+.+++.+-+
T Consensus 57 ~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~ 108 (298)
T PLN02778 57 KPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLVLTNY 108 (298)
T ss_pred CCCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 459999999864 2 111222 224567888999999886554
No 37
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=38.04 E-value=60 Score=25.31 Aligned_cols=47 Identities=6% Similarity=0.077 Sum_probs=27.3
Q ss_pred CCceEEEeeCCCC---CcHH-HH---HHHHHHHHHHHHHCCCcEEEEccccccccc
Q psy3800 49 NAKHVIHTVGPVG---EKPA-LL---KSAYQRSLEVMKQNNLRSILEVMKQNNLRS 97 (133)
Q Consensus 49 ~~k~IIH~VgP~~---~~~~-~L---~~~y~~~L~~A~~~~~~SIAfPaigtG~~g 97 (133)
+++.|||.+++.. .+.. .+ -....++++.|.+.+.+ +.+.. ++++|+
T Consensus 66 ~~D~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~S-S~~vy~ 119 (314)
T TIGR02197 66 KIEAIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEKGIP-FIYAS-SAATYG 119 (314)
T ss_pred CCCEEEECccccCccccchHHHHHHHHHHHHHHHHHHHHhCCc-EEEEc-cHHhcC
Confidence 4699999998642 1111 11 23456778888888864 44422 334454
No 38
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=34.66 E-value=1.6e+02 Score=20.57 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=14.6
Q ss_pred CCCCCcEEEccCCCCCC
Q psy3800 28 GCETGDAKITAGYNLPA 44 (133)
Q Consensus 28 ~~~~G~~viT~~~~L~~ 44 (133)
.++.|+.++|+++.++.
T Consensus 39 ~l~~gElvlttg~~~~~ 55 (123)
T PF07905_consen 39 WLRGGELVLTTGYALRD 55 (123)
T ss_pred hCCCCeEEEECCcccCC
Confidence 57899999999998876
No 39
>COG4295 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.43 E-value=1.6e+02 Score=24.13 Aligned_cols=37 Identities=11% Similarity=0.026 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHHHHHHHCCCcEEEEccccccccchH
Q psy3800 63 KPALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSID 99 (133)
Q Consensus 63 ~~~~L~~~y~~~L~~A~~~~~~SIAfPaigtG~~g~~ 99 (133)
-.+.|....++.|.+|..++.+.+.+=+-|+|+|+-|
T Consensus 198 i~~~l~~R~~kil~la~~~~~~alVLGAwGCGVFrNd 234 (285)
T COG4295 198 IREALNIRIKKILKLALSKNPKALVLGAWGCGVFRND 234 (285)
T ss_pred hHHHHHHHHHHHHHHHhhcCCCeEEEcccccccccCC
Confidence 4477899999999999999999999999999999864
No 40
>PTZ00325 malate dehydrogenase; Provisional
Probab=34.16 E-value=1.1e+02 Score=25.49 Aligned_cols=40 Identities=13% Similarity=0.206 Sum_probs=32.8
Q ss_pred CCceEEEeeCCCC----CcHHHHHH---HHHHHHHHHHHCCCcEEEE
Q psy3800 49 NAKHVIHTVGPVG----EKPALLKS---AYQRSLEVMKQNNLRSILE 88 (133)
Q Consensus 49 ~~k~IIH~VgP~~----~~~~~L~~---~y~~~L~~A~~~~~~SIAf 88 (133)
+++.|||++|+.- +..+.|.. .+++..+...+++.+.|-+
T Consensus 76 gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~ivi 122 (321)
T PTZ00325 76 GADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVG 122 (321)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 6799999999854 23567777 8999999999999998776
No 41
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=34.03 E-value=11 Score=25.63 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=36.3
Q ss_pred HHHHHHHHHHCCCcEEEEccccccccchHHHhhhhhhHHHHHhhhhhhhhhh
Q psy3800 71 YQRSLEVMKQNNLRSILEVMKQNNLRSIDILKGRQQKWRYRLCMTFSRNILI 122 (133)
Q Consensus 71 y~~~L~~A~~~~~~SIAfPaigtG~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (133)
|...|-.....|+.||-+| |+|.-.||-....++...+.+-..-+|..|.
T Consensus 20 fEDvLgvGh~~G~sSiiVP--GsGe~NfDs~e~NP~et~kqRrE~EV~~LLe 69 (80)
T PF08149_consen 20 FEDVLGVGHSKGFSSIIVP--GSGEPNFDSLEANPFETKKQRREREVRSLLE 69 (80)
T ss_pred hHHeeEeeccCceeEEecc--CCCCCCCCcccCCcccchhHHhHHHHHHHHH
Confidence 4556777788999999999 6777777766666777777766666666553
No 42
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=33.60 E-value=1.3e+02 Score=23.19 Aligned_cols=46 Identities=11% Similarity=0.058 Sum_probs=32.3
Q ss_pred ceEEEeeCCCC---C-------cHHHHHHHHHHHHHHHHHCCCcEEEEccccccccc
Q psy3800 51 KHVIHTVGPVG---E-------KPALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRS 97 (133)
Q Consensus 51 k~IIH~VgP~~---~-------~~~~L~~~y~~~L~~A~~~~~~SIAfPaigtG~~g 97 (133)
+.|||+++... . ....--...++.|+.|.+.+.+.+-| .-+.+.++
T Consensus 66 d~vih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~-~ss~~~~~ 121 (314)
T COG0451 66 DAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVF-ASSVSVVY 121 (314)
T ss_pred CEEEEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEE-eCCCceEC
Confidence 78999998765 1 12344455678888899999999999 44444444
No 43
>PF09039 HTH_Tnp_Mu_2: Mu DNA binding, I gamma subdomain; InterPro: IPR015126 This domain is responsible for binding the DNA attachment sites at each end of the Mu genome. They adopt a secondary structure comprising a four helix bundle tightly packed around a hydrophobic core consisting of aliphatic and aromatic amino acid residues. Helices 1 and 2 are oriented antiparallel to each other. Helix 3 crosses helices 1 and 2 at angles of 60 and 120 degrees, respectively. Excluding the C-terminal helix 4, the fold of the I-gamma subdomain is remarkably similar to that of the homeodomain family of helix-turn-helix DNA-binding proteins, although their amino acid sequences are completely unrelated []. ; PDB: 2EZL_A 2EZH_A 2EZI_A 2EZK_A.
Probab=32.59 E-value=29 Score=24.60 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=19.7
Q ss_pred cHHHHHHHHHHHHHHHHHCCCcEEEEcccccccc
Q psy3800 63 KPALLKSAYQRSLEVMKQNNLRSILEVMKQNNLR 96 (133)
Q Consensus 63 ~~~~L~~~y~~~L~~A~~~~~~SIAfPaigtG~~ 96 (133)
+...+..||+.....|.++|+ .+|+..|=-.
T Consensus 47 e~Ps~~~cyrr~~~~a~~~Gw---~iPS~~t~rR 77 (108)
T PF09039_consen 47 EKPSFSACYRRLKRAAKENGW---PIPSEKTLRR 77 (108)
T ss_dssp T---HHHHHHHHHHHHHHHT--------HHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCC---CCCCHHHHHH
Confidence 445799999999999999997 7898887433
No 44
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=31.74 E-value=1e+02 Score=23.63 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=23.4
Q ss_pred CCceEEEeeCCCC-----C--cHHHH----HHHHHHHHHHHHHCCCc
Q psy3800 49 NAKHVIHTVGPVG-----E--KPALL----KSAYQRSLEVMKQNNLR 84 (133)
Q Consensus 49 ~~k~IIH~VgP~~-----~--~~~~L----~~~y~~~L~~A~~~~~~ 84 (133)
++++|||.++... . ..+.+ -...+++++.|.+.+.+
T Consensus 57 ~~D~Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~ 103 (292)
T TIGR01777 57 GADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQK 103 (292)
T ss_pred CCCEEEECCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCCC
Confidence 5699999998532 1 11222 22367888888888874
No 45
>PLN02240 UDP-glucose 4-epimerase
Probab=31.14 E-value=1e+02 Score=24.56 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=28.1
Q ss_pred CCceEEEeeCCCC------CcHHHHH---HHHHHHHHHHHHCCCcEEEEccccccccc
Q psy3800 49 NAKHVIHTVGPVG------EKPALLK---SAYQRSLEVMKQNNLRSILEVMKQNNLRS 97 (133)
Q Consensus 49 ~~k~IIH~VgP~~------~~~~~L~---~~y~~~L~~A~~~~~~SIAfPaigtG~~g 97 (133)
++++|||+++... ...+.++ ....+.++.|.+.+++++-+.. +++.+|
T Consensus 81 ~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~S-s~~vyg 137 (352)
T PLN02240 81 RFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSS-SATVYG 137 (352)
T ss_pred CCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc-cHHHhC
Confidence 4599999997432 1111222 3345677788888888776633 234444
No 46
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=29.96 E-value=75 Score=26.28 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=28.8
Q ss_pred ceEEEeeCCCC-CcHHHHHHHHHHHHHHHHHCCCc
Q psy3800 51 KHVIHTVGPVG-EKPALLKSAYQRSLEVMKQNNLR 84 (133)
Q Consensus 51 k~IIH~VgP~~-~~~~~L~~~y~~~L~~A~~~~~~ 84 (133)
+|.|-+.+|+| ..++.|+++..++.+...++|..
T Consensus 222 rYri~v~a~dykkaee~l~~a~~~~~~~ikk~gg~ 256 (269)
T COG1093 222 RYRIDVQAPDYKKAEEVLEKAAEAAIKTIKKLGGE 256 (269)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCe
Confidence 67788888888 78899999999999999887743
No 47
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.35 E-value=1.9e+02 Score=23.38 Aligned_cols=35 Identities=3% Similarity=-0.198 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEEccccccccchH
Q psy3800 65 ALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSID 99 (133)
Q Consensus 65 ~~L~~~y~~~L~~A~~~~~~SIAfPaigtG~~g~~ 99 (133)
..=.+.+++.++.|.+.|++.|++=++|+-++.-|
T Consensus 37 ~~G~~~l~~i~~~~~~~gI~~lT~YaFS~EN~kR~ 71 (242)
T PRK14838 37 QAGAETVHIITEEAARLGVKFLTLYTFSTENWNRP 71 (242)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeechhhcCCC
Confidence 34455677788888999999999999999998754
No 48
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=29.17 E-value=35 Score=28.28 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=47.4
Q ss_pred CCCcEEEccCCCCCCCCCCCCceEEEeeCCCCCcHHHHHHHHHHHHHHHHHCCCcEEEE----ccccccccchH-HHhhh
Q psy3800 30 ETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPALLKSAYQRSLEVMKQNNLRSILE----VMKQNNLRSID-ILKGR 104 (133)
Q Consensus 30 ~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~~~~~~L~~~y~~~L~~A~~~~~~SIAf----PaigtG~~g~~-~~~~~ 104 (133)
.-|..++..+.+|.+ +-.+|..-|..-+.+.|...-..-=+.|.++|++=+-. |.=..|..|.. +..+.
T Consensus 117 ~~G~~i~~~Ak~mGA------ktFVh~sfprhms~~~l~~Rr~~M~~~C~~lGi~fv~~taPDP~sd~gv~gaqqfIlE~ 190 (275)
T PF12683_consen 117 SRGYTIVWAAKKMGA------KTFVHYSFPRHMSYELLARRRDIMEEACKDLGIKFVEVTAPDPTSDVGVAGAQQFILED 190 (275)
T ss_dssp HHHHHHHHHHHHTT-------S-EEEEEETTGGGSHHHHHHHHHHHHHHHHCT--EEEEEE---SSTCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHcCC------ceEEEEechhhcchHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcHHHHHHHHHH
Confidence 345556667777877 99999999987455555555444445789999887777 55566666653 55556
Q ss_pred hhhHHHH
Q psy3800 105 QQKWRYR 111 (133)
Q Consensus 105 ~~~~~~~ 111 (133)
.++|...
T Consensus 191 vp~~i~k 197 (275)
T PF12683_consen 191 VPKWIKK 197 (275)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 49
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=25.91 E-value=2.4e+02 Score=22.71 Aligned_cols=35 Identities=0% Similarity=-0.221 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEEccccccccchH
Q psy3800 65 ALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSID 99 (133)
Q Consensus 65 ~~L~~~y~~~L~~A~~~~~~SIAfPaigtG~~g~~ 99 (133)
..=.+.+.+.++.|.+.|++.|++=++|+.++.-|
T Consensus 41 ~~G~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~ 75 (243)
T PRK14829 41 KAGEPVLFDVVAGAIEAGVPYLSLYTFSTENWKRS 75 (243)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeeecchhhCCC
Confidence 33445667778888999999999999999998764
No 50
>PLN02650 dihydroflavonol-4-reductase
Probab=25.44 E-value=2e+02 Score=23.11 Aligned_cols=41 Identities=15% Similarity=0.313 Sum_probs=26.4
Q ss_pred CCceEEEeeCCCC----CcH-HHHH---HHHHHHHHHHHHCC-CcEEEEc
Q psy3800 49 NAKHVIHTVGPVG----EKP-ALLK---SAYQRSLEVMKQNN-LRSILEV 89 (133)
Q Consensus 49 ~~k~IIH~VgP~~----~~~-~~L~---~~y~~~L~~A~~~~-~~SIAfP 89 (133)
++++|||.+++.. +.. +.++ ....+.|+.|.+.+ .+.+-+.
T Consensus 77 ~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~ 126 (351)
T PLN02650 77 GCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFT 126 (351)
T ss_pred CCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEe
Confidence 4699999998642 111 2232 34567788888776 6777664
No 51
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=25.41 E-value=1.7e+02 Score=24.99 Aligned_cols=57 Identities=11% Similarity=0.014 Sum_probs=39.0
Q ss_pred CCCcEEEccCCCCCCCCCCCCceEEEeeCCCCCc-----HHHHHHHHHHHHHHHHHCCCcEEEE--ccccccc
Q psy3800 30 ETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEK-----PALLKSAYQRSLEVMKQNNLRSILE--VMKQNNL 95 (133)
Q Consensus 30 ~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~~~-----~~~L~~~y~~~L~~A~~~~~~SIAf--PaigtG~ 95 (133)
+.=.+.+|+++.|-. +.+- +..|.+ ...+.+++++..+.+.+.|++.|.+ |+|++|.
T Consensus 111 ~~VKv~iTGP~tL~~-------~~f~--~~~Y~d~~~~la~~ia~~l~~e~~~l~~~gv~~IqIDEP~l~~~~ 174 (344)
T PRK06052 111 LEVRVCVTGPTELYL-------QEFG--GTIYTDILLILAKSVERFVENAIKSAKNFKIKTISIDEPSLGINP 174 (344)
T ss_pred CCeEEEecCHHHHHH-------HHcC--CccccchHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCcccccCC
Confidence 334567788777643 2111 113322 3567778888888889999999999 9999997
No 52
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=24.98 E-value=2e+02 Score=19.75 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=27.2
Q ss_pred ceEEEeeCCCC-CcHHHHHHHHHHHHHHHHHCCCcEEEE
Q psy3800 51 KHVIHTVGPVG-EKPALLKSAYQRSLEVMKQNNLRSILE 88 (133)
Q Consensus 51 k~IIH~VgP~~-~~~~~L~~~y~~~L~~A~~~~~~SIAf 88 (133)
+|-.|.-|-.. .+-+.+-.+++.+.+.+.+.|...|.+
T Consensus 34 ~y~~~pm~T~IEGe~dev~~~i~~~~e~~~~~G~~Rv~t 72 (97)
T TIGR00106 34 KYELHPMGTLIEGDLDELFEAIKAIHEAVLEKGSDRVYT 72 (97)
T ss_pred CeEecCCccEEecCHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 55555444433 335778889999999999999988776
No 53
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.47 E-value=2.6e+02 Score=22.69 Aligned_cols=33 Identities=3% Similarity=-0.087 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHCCCcEEEEccccccccchH
Q psy3800 67 LKSAYQRSLEVMKQNNLRSILEVMKQNNLRSID 99 (133)
Q Consensus 67 L~~~y~~~L~~A~~~~~~SIAfPaigtG~~g~~ 99 (133)
=.+.+.++++.|.+.|++.|++=++|+-++.-|
T Consensus 56 G~~~l~~~~~~~~~~gIk~lTvYaFS~eN~~R~ 88 (256)
T PRK14828 56 GAAKIGEFLGWCDETDVNVVTLYLLSTDNLGRP 88 (256)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEEEhhhcCCC
Confidence 345677788889999999999999999998764
No 54
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=24.21 E-value=1.5e+02 Score=19.25 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=29.7
Q ss_pred CceEEEeeCC-CCCcHHHHHHHHHHHHHHHHHCCCcEEEEc
Q psy3800 50 AKHVIHTVGP-VGEKPALLKSAYQRSLEVMKQNNLRSILEV 89 (133)
Q Consensus 50 ~k~IIH~VgP-~~~~~~~L~~~y~~~L~~A~~~~~~SIAfP 89 (133)
+-.|.||.-| .+...-.=...++.+|+.|+++|.+-++.+
T Consensus 22 ~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv~p~C 62 (78)
T PF14542_consen 22 VIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKVVPTC 62 (78)
T ss_dssp EEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EEEETS
T ss_pred EEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 4678899855 455556777888999999999999987664
No 55
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=23.84 E-value=86 Score=21.81 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=28.2
Q ss_pred HhhCHHHHHHHHhh-CCCCCCcEE------EccCCCCCCCCCCCCceEEEeeCCCCCcHHHHHHHHHHH
Q psy3800 13 RAAGPQLKEECRTL-NGCETGDAK------ITAGYNLPAKLPINAKHVIHTVGPVGEKPALLKSAYQRS 74 (133)
Q Consensus 13 ~aaG~~l~~ec~~~-~~~~~G~~v------iT~~~~L~~~~~~~~k~IIH~VgP~~~~~~~L~~~y~~~ 74 (133)
-++||+|.++.-+. .+..+|+.. -+|.||.-+ +.-.|++ .+.+++...|+..
T Consensus 22 G~a~~~l~~~vv~vvqr~ap~~~~~~~~~k~SSkGnY~s-----vsI~i~A-----~~~EQ~e~ly~eL 80 (90)
T COG2921 22 GAAGPELEDQVVEVVQRHAPGDYTPRVSWKPSSKGNYLS-----VSITIRA-----TNIEQVEALYREL 80 (90)
T ss_pred cccchhHHHHHHHHHHHHCCcccCceeeeccCCCCceEE-----EEEEEEE-----CCHHHHHHHHHHH
Confidence 36789999987554 333444333 233444322 2233332 5567888777764
No 56
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.46 E-value=3.3e+02 Score=22.74 Aligned_cols=33 Identities=0% Similarity=-0.280 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHCCCcEEEEccccccccchH
Q psy3800 67 LKSAYQRSLEVMKQNNLRSILEVMKQNNLRSID 99 (133)
Q Consensus 67 L~~~y~~~L~~A~~~~~~SIAfPaigtG~~g~~ 99 (133)
=.+.+.+.++.|.+.|++.|++=++||.++.-+
T Consensus 96 G~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~ 128 (296)
T PRK14827 96 GEAVVIDIACGAIELGIKWLSLYAFSTENWKRS 128 (296)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeecchhhcCC
Confidence 345677788889999999999999999998754
No 57
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.04 E-value=3e+02 Score=22.06 Aligned_cols=34 Identities=3% Similarity=-0.198 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHCCCcEEEEccccccccchH
Q psy3800 66 LLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSID 99 (133)
Q Consensus 66 ~L~~~y~~~L~~A~~~~~~SIAfPaigtG~~g~~ 99 (133)
.=.+.+++.++.|.+.|++.+++=++|+-++.-|
T Consensus 32 ~G~~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~ 65 (233)
T PRK14833 32 KGVKTLREITIWCANHKLECLTLYAFSTENWKRP 65 (233)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeecchhhcCcC
Confidence 3345667778888999999999999999998764
No 58
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=22.61 E-value=2e+02 Score=21.12 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=32.1
Q ss_pred CCceEEEeeCCCC------CcH---HHHHHHHHHHHHHHHHCCCcEEEEccccccccch
Q psy3800 49 NAKHVIHTVGPVG------EKP---ALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSI 98 (133)
Q Consensus 49 ~~k~IIH~VgP~~------~~~---~~L~~~y~~~L~~A~~~~~~SIAfPaigtG~~g~ 98 (133)
+++.|||++++.. ... +.--...++.|+.|.+.+.+.+-++.= +++++.
T Consensus 65 ~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS-~~~y~~ 122 (236)
T PF01370_consen 65 NIDVVIHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSS-ASVYGD 122 (236)
T ss_dssp TESEEEEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-GGGGTS
T ss_pred CceEEEEeeccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 3589999998741 112 222456778888999999977766432 545554
No 59
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=22.27 E-value=2.5e+02 Score=21.94 Aligned_cols=38 Identities=8% Similarity=0.061 Sum_probs=23.0
Q ss_pred CceEEEeeCC----CCCcHHHHHH---HHHHHHHHHHHCCCcEEEE
Q psy3800 50 AKHVIHTVGP----VGEKPALLKS---AYQRSLEVMKQNNLRSILE 88 (133)
Q Consensus 50 ~k~IIH~VgP----~~~~~~~L~~---~y~~~L~~A~~~~~~SIAf 88 (133)
+++|||+++- .+.....++. ...++|+.|.+.+.+ +-|
T Consensus 69 ~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~~-~i~ 113 (308)
T PRK11150 69 IEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIP-FLY 113 (308)
T ss_pred ccEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHcCCc-EEE
Confidence 5999999852 1222223332 245788888888876 444
No 60
>KOG3369|consensus
Probab=22.15 E-value=1e+02 Score=24.30 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=46.7
Q ss_pred cEEEccCCCCCCCCCC-CCceEEEeeCCCCCcHHHHHHHHHHHHHHHHHCCCcEEEEcc
Q psy3800 33 DAKITAGYNLPAKLPI-NAKHVIHTVGPVGEKPALLKSAYQRSLEVMKQNNLRSILEVM 90 (133)
Q Consensus 33 ~~viT~~~~L~~~~~~-~~k~IIH~VgP~~~~~~~L~~~y~~~L~~A~~~~~~SIAfPa 90 (133)
+++-|.-+.|.|++.+ |+|+|+-+-.+.-..+.+|++.|.-=-+.+.++..-|+-+|.
T Consensus 124 e~LetdtF~l~~~QTlTG~KFVvis~~~~~~aD~lLrKiYelYsDyvlKNPfYSlEMPI 182 (199)
T KOG3369|consen 124 EVLETDTFTLHIFQTLTGTKFVVIAEPGTQGADSLLRKIYELYSDYVLKNPFYSLEMPI 182 (199)
T ss_pred EEEEeccEEEEEEEccCCcEEEEEecCCchhHHHHHHHHHHHHHHHhhcCCccCcccce
Confidence 5666888999888777 899998877665456788999998777888899888888874
No 61
>PHA00684 hypothetical protein
Probab=22.05 E-value=2.3e+02 Score=20.91 Aligned_cols=37 Identities=8% Similarity=-0.104 Sum_probs=34.0
Q ss_pred cHHHHHHHHHHHHHHHHHCCCcEEEEccccccccchH
Q psy3800 63 KPALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSID 99 (133)
Q Consensus 63 ~~~~L~~~y~~~L~~A~~~~~~SIAfPaigtG~~g~~ 99 (133)
..+.++..+..-++.|+++.-.+.-+-.||+|+.|+.
T Consensus 54 ~l~~I~~~V~~Fi~ya~~hp~~~F~VT~IGCGiAG~~ 90 (128)
T PHA00684 54 SLPDIGAAVNRFIAYATAHPHLNFQVTRVGCGLAGHL 90 (128)
T ss_pred cHHHHHHHHHHHHHHHHhCCCcEEEeeeeccccccCC
Confidence 3578999999999999999999999999999999985
No 62
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.80 E-value=3.2e+02 Score=21.96 Aligned_cols=35 Identities=0% Similarity=-0.203 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEEccccccccchH
Q psy3800 65 ALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSID 99 (133)
Q Consensus 65 ~~L~~~y~~~L~~A~~~~~~SIAfPaigtG~~g~~ 99 (133)
..=.+.+++.++.|.+.|++.+++=++||-++.-|
T Consensus 33 ~~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp 67 (230)
T PRK14837 33 KEGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRT 67 (230)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCC
Confidence 34456777888889999999999999999998765
No 63
>PLN00198 anthocyanidin reductase; Provisional
Probab=21.25 E-value=3e+02 Score=21.93 Aligned_cols=40 Identities=18% Similarity=0.351 Sum_probs=24.3
Q ss_pred CCceEEEeeCCCC---CcH-HHH----HHHHHHHHHHHHHC-CCcEEEE
Q psy3800 49 NAKHVIHTVGPVG---EKP-ALL----KSAYQRSLEVMKQN-NLRSILE 88 (133)
Q Consensus 49 ~~k~IIH~VgP~~---~~~-~~L----~~~y~~~L~~A~~~-~~~SIAf 88 (133)
++++|||.++|.. ... ..+ -....+.|+.|.+. +.+.+-|
T Consensus 80 ~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~ 128 (338)
T PLN00198 80 GCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVIL 128 (338)
T ss_pred cCCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEE
Confidence 4699999998743 221 112 23355667777665 5777666
No 64
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=20.76 E-value=2.9e+02 Score=22.19 Aligned_cols=40 Identities=10% Similarity=0.226 Sum_probs=26.2
Q ss_pred CCceEEEeeCCCC------CcHHHHHH---HHHHHHHHHHHCCCcEEEE
Q psy3800 49 NAKHVIHTVGPVG------EKPALLKS---AYQRSLEVMKQNNLRSILE 88 (133)
Q Consensus 49 ~~k~IIH~VgP~~------~~~~~L~~---~y~~~L~~A~~~~~~SIAf 88 (133)
+++.|||.++... +..+.++. ...+.++.|.+.+.++|-+
T Consensus 74 ~iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~ 122 (324)
T TIGR03589 74 GVDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVA 122 (324)
T ss_pred cCCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 4699999998532 21222222 4567778888888887765
No 65
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=20.13 E-value=1.2e+02 Score=20.54 Aligned_cols=39 Identities=8% Similarity=0.090 Sum_probs=27.9
Q ss_pred CceEEEeeCCCC-CcHHHHHHHHHHHHHHHHHCCCcEEEE
Q psy3800 50 AKHVIHTVGPVG-EKPALLKSAYQRSLEVMKQNNLRSILE 88 (133)
Q Consensus 50 ~k~IIH~VgP~~-~~~~~L~~~y~~~L~~A~~~~~~SIAf 88 (133)
++|-+|.-+-.. -+.+.|-.+++++.+.+.+.|.+.|..
T Consensus 31 l~y~v~pm~T~iEGe~dev~~~i~~~~e~~~~~G~~Rv~t 70 (92)
T PF01910_consen 31 LKYEVGPMGTTIEGELDEVMALIKEAHEALFEAGAKRVVT 70 (92)
T ss_dssp SEEEEETTEEEEEEEHHHHHHHHHHHHHHHHCTTSSEEEE
T ss_pred CceEEcCCccEEEecHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 355555443332 346889999999999999999888765
No 66
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.09 E-value=3.8e+02 Score=21.67 Aligned_cols=35 Identities=9% Similarity=-0.086 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEEccccccccchH
Q psy3800 65 ALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSID 99 (133)
Q Consensus 65 ~~L~~~y~~~L~~A~~~~~~SIAfPaigtG~~g~~ 99 (133)
..=.+.+.+.++.|.+.|++.|++=++|+-++.-|
T Consensus 41 ~~G~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~ 75 (249)
T PRK14834 41 RAGVEALRRVVRAAGELGIGYLTLFAFSSENWSRP 75 (249)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEEeccccCCC
Confidence 33345667778888999999999999999998765
No 67
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=20.03 E-value=2.4e+02 Score=22.58 Aligned_cols=39 Identities=8% Similarity=0.051 Sum_probs=23.0
Q ss_pred CCceEEEeeCCC----C-CcHHH-H---HHHHHHHHHHHHHCCCcEEEE
Q psy3800 49 NAKHVIHTVGPV----G-EKPAL-L---KSAYQRSLEVMKQNNLRSILE 88 (133)
Q Consensus 49 ~~k~IIH~VgP~----~-~~~~~-L---~~~y~~~L~~A~~~~~~SIAf 88 (133)
++++|||+++.. + ++.+. . .....++++.|.+.+ +.+-+
T Consensus 68 ~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~-~~~v~ 115 (347)
T PRK11908 68 KCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVF 115 (347)
T ss_pred CCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC-CeEEE
Confidence 469999988632 1 22222 1 233467888888887 44444
Done!