RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3800
(133 letters)
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein,
structural genomics, NPPSFA; 1.78A {Thermus
thermophilus} PDB: 3v45_A
Length = 159
Score = 133 bits (338), Expect = 3e-41
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 7 IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEK--P 64
+ GAI R GP ++EEC + G+A +T NLP ++VIH E
Sbjct: 33 VAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLP------VRYVIHAAVLGDEPASL 86
Query: 65 ALLKSAYQRSLEVMKQNNLRSI 86
++ A + +LE + L+++
Sbjct: 87 ETVRKATKSALEKAVELGLKTV 108
>2x47_A Macro domain-containing protein 1; signaling protein, signal
transduction, estrogen signaling; 1.70A {Homo sapiens}
Length = 235
Score = 135 bits (342), Expect = 4e-41
Identities = 44/86 (51%), Positives = 57/86 (66%), Gaps = 12/86 (13%)
Query: 7 IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV------ 60
+DG IHRAAGP L +ECRTL C+TG AKIT GY LP AK+VIHTVGP+
Sbjct: 93 VDGCIHRAAGPLLTDECRTLQSCKTGKAKITGGYRLP------AKYVIHTVGPIAYGEPS 146
Query: 61 GEKPALLKSAYQRSLEVMKQNNLRSI 86
+ A L+S Y SL+++ ++ LRS+
Sbjct: 147 ASQAAELRSCYLSSLDLLLEHRLRSV 172
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core,
chromatin regulator, nucleus, DNA-binding protein,
phosphoprotein; 2.09A {Homo sapiens}
Length = 193
Score = 130 bits (330), Expect = 9e-40
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 13/87 (14%)
Query: 7 IDGAIHRAAGPQLKEECRTLN----GCETGDAKITAGYNLPAKLPINAKHVIHTVGPV-- 60
I A+ +A G + E + L E +A ++ L AK VIH P
Sbjct: 53 IGKALEKAGGKEFLETVKELRKSQGPLEVAEAAVSQSSGLA------AKFVIHCHIPQWG 106
Query: 61 -GEKPALLKSAYQRSLEVMKQNNLRSI 86
+ L+ + L + L+S+
Sbjct: 107 SDKCEEQLEETIKNCLSAAEDKKLKSV 133
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain,
macro-domain, structural protein; 1.60A {Rattus
norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A*
3iif_A* 1zr5_A
Length = 193
Score = 129 bits (327), Expect = 2e-39
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 13/87 (14%)
Query: 7 IDGAIHRAAGPQLKEECRTLN----GCETGDAKITAGYNLPAKLPINAKHVIHTVGPV-- 60
+ + + G + E L E A ++AG+ LP AK VIH PV
Sbjct: 50 VGSTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSAGHGLP------AKFVIHCNSPVWG 103
Query: 61 -GEKPALLKSAYQRSLEVMKQNNLRSI 86
+ LL+ + L + L+SI
Sbjct: 104 SDKCEELLEKTVKNCLALADDRKLKSI 130
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium,
SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo
sapiens}
Length = 214
Score = 129 bits (327), Expect = 4e-39
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 16/90 (17%)
Query: 7 IDGAIHRAAGPQLKEECRTL----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV-- 60
+ A+ +AAGP+L+ +C + G+A I+ LP HVIH VGP
Sbjct: 68 LAAALSKAAGPELQADCDQIVKREGRLLPGNATISKAGKLP------YHHVIHAVGPRWS 121
Query: 61 ----GEKPALLKSAYQRSLEVMKQNNLRSI 86
LL+ A Q SL + ++ RSI
Sbjct: 122 GYEAPRCVYLLRRAVQLSLCLAEKYKYRSI 151
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta
monomeric protein, structural genomics, PSI, protein
structure initiative; HET: MES; 2.00A {Escherichia coli}
SCOP: c.50.1.2
Length = 184
Score = 127 bits (321), Expect = 1e-38
Identities = 39/89 (43%), Positives = 50/89 (56%), Gaps = 15/89 (16%)
Query: 7 IDGAIHRAAGPQLKEECRTLN----GCETGDAKITAGYNLPAKLPINAKHVIHTVGPV-- 60
+DGAIHRAAGP L + C + C TG A IT +LP AK V+HTVGPV
Sbjct: 34 VDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLP------AKAVVHTVGPVWR 87
Query: 61 -GEKP--ALLKSAYQRSLEVMKQNNLRSI 86
GE+ LL+ AY SL ++ N+ S+
Sbjct: 88 GGEQNEDQLLQDAYLNSLRLVAANSYTSV 116
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural
genomics consortium, SGC, transferase, PARP14 macro 2;
HET: AR6; 2.20A {Homo sapiens}
Length = 221
Score = 127 bits (321), Expect = 3e-38
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 14/88 (15%)
Query: 7 IDGAIHRAAGPQLKEECRTLN---GCETGDAKITAGYNLPAKLPINAKHVIHTVGPV--- 60
+ ++ AGP+L+EE T+ G T+ +NL ++V+H V P
Sbjct: 71 LSKSLLEKAGPELQEELDTVGQGVAVSMGTVLKTSSWNLD------CRYVLHVVAPEWRN 124
Query: 61 --GEKPALLKSAYQRSLEVMKQNNLRSI 86
+++ + +E+ + +L+SI
Sbjct: 125 GSTSSLKIMEDIIRECMEITESLSLKSI 152
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function;
HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP:
c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*
Length = 211
Score = 123 bits (311), Expect = 1e-36
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 19/96 (19%)
Query: 7 IDGAIHRAAGP----------QLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHT 56
+ AI +A + E + + G+ +T NL + K+V HT
Sbjct: 52 VAYAIAKACAGDAGLYTEISKKAMREQFGRDYIDHGEVVVTPAMNLEER---GIKYVFHT 108
Query: 57 VGPV------GEKPALLKSAYQRSLEVMKQNNLRSI 86
VGP+ E L A+ LE ++ + SI
Sbjct: 109 VGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESI 144
>3kh6_A Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3, B-aggressive
lymphoma protein 3, SGC, structural genomics consortium,
alternative splicing; HET: APR; 2.20A {Homo sapiens}
PDB: 3v2b_A*
Length = 199
Score = 118 bits (298), Expect = 6e-35
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 11/80 (13%)
Query: 7 IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPAL 66
+ AI AG ++ EC L D IT G L K +IH G
Sbjct: 64 VSRAILEGAGQAVESECAVLAAQPHRDFIITPGGCLK------CKIIIHVPG-----GKD 112
Query: 67 LKSAYQRSLEVMKQNNLRSI 86
++ LE +Q S+
Sbjct: 113 VRKTVTSVLEECEQRKYTSV 132
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain,
NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A
{Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A
3ewp_A*
Length = 176
Score = 112 bits (282), Expect = 1e-32
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 14/85 (16%)
Query: 7 IDGAIHRAAGPQLKEECRT-LNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG---E 62
+ AI G E C + +T + + V + VGP
Sbjct: 53 VAKAIADFCGLDFVEYCEDYVKKHGPQQRLVTPSFVKG------IQCVNNVVGPRHGDNN 106
Query: 63 KPALLKSAYQRSLEVMKQNNLRSIL 87
L +AY+ L + + + +
Sbjct: 107 LHEKLVAAYKNVLV----DGVVNYV 127
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P
phosphatase, structural GE joint center for structural
genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP:
c.50.1.2 PDB: 2fav_A*
Length = 182
Score = 112 bits (281), Expect = 2e-32
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 20/87 (22%)
Query: 7 IDGAIHRAAGPQLKEEC----RTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV-- 60
+ GA+++A +++E + G + + +G+NL AK +H VGP
Sbjct: 55 VAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-------AKKCLHVVGPNLN 107
Query: 61 -GEKPALLKSAYQRSLEVMKQNNLRSI 86
GE LLK+AY+ N+ +
Sbjct: 108 AGEDIQLLKAAYENF------NSQDIL 128
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus,
VIZI enzymes involved in replication, ATP-binding, cell
membrane endosome; 1.65A {Chikungunya virus} PDB:
3gpo_A* 3gpq_A
Length = 168
Score = 111 bits (279), Expect = 3e-32
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 20/86 (23%)
Query: 7 IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV------ 60
+ A+++ K G AK P VIH VGP
Sbjct: 41 VCKAVYKKWPESFKNSA-----TPVGTAKTVMCGTYP---------VIHAVGPNFSNYSE 86
Query: 61 GEKPALLKSAYQRSLEVMKQNNLRSI 86
E L +AY+ + + + + S+
Sbjct: 87 SEGDRELAAAYREVAKEVTRLGVNSV 112
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine
encephalitis virus alphavirus; HET: BCN; 2.30A
{Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Length = 168
Score = 105 bits (264), Expect = 4e-30
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 20/86 (23%)
Query: 7 IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV------ 60
+ GA+++ E L E G A++ G AKH+IH VGP
Sbjct: 35 VCGALYKKFP-----ESFDLQPIEVGKARLVKG---------AAKHIIHAVGPNFNKVSE 80
Query: 61 GEKPALLKSAYQRSLEVMKQNNLRSI 86
E L AY+ +++ NN +S+
Sbjct: 81 VEGDKQLAEAYESIAKIVNDNNYKSV 106
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding,
endonuclease, macro domain, viral protein, ATP-binding,
exonuclease; 1.8A {Human coronavirus NL63}
Length = 174
Score = 103 bits (260), Expect = 2e-29
Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 12/82 (14%)
Query: 7 IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG--EKP 64
+ AI QL+ + G K+ AG L + +V + VGP +
Sbjct: 52 VARAIDILTEGQLQSLSKDY-ISSNGPLKVGAGVMLECE----KFNVFNVVGPRTGKHEH 106
Query: 65 ALLKSAYQRSLEVMKQNNLRSI 86
+LL AY L
Sbjct: 107 SLLVEAYNSIL-----FENGIP 123
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3;
coronavirus, X domain, RNA binding protein; 2.20A
{Feline infectious peritonitis virus} PDB: 3ew5_A*
3jzt_A*
Length = 168
Score = 102 bits (256), Expect = 7e-29
Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 19/87 (21%)
Query: 7 IDGAIHRAAGPQLKEEC----RTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG- 61
+ AI G +L + ++ G+A + L V++ VGP
Sbjct: 45 VARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENV-LE------HLSVMNAVGPRNG 97
Query: 62 --EKPALLKSAYQRSLEVMKQNNLRSI 86
L + Y+ I
Sbjct: 98 DSRVEGKLCNVYKAIA-----KCDGKI 119
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3,
ADRP, hydrolase, ribosomal frameshifting, RNA-binding;
1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*
Length = 193
Score = 97.8 bits (244), Expect = 8e-27
Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 20/86 (23%)
Query: 7 IDGAIHRAAGPQLKEECRTLN----GCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG- 61
+ A+ +L+ + + G + +L + + VGP
Sbjct: 73 LAKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVECDSLR---------IFNVVGPRKG 123
Query: 62 -EKPALLKSAYQRSLEVMKQNNLRSI 86
+ LL AY N +
Sbjct: 124 KHERDLLIKAYNTIN-----NEQGTP 144
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural
genomics, dimer, two domain organization, PSI, PR
structure initiative; HET: XYL; 1.90A {Saccharomyces
cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A*
Length = 284
Score = 48.5 bits (115), Expect = 8e-08
Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 20/106 (18%)
Query: 7 IDGAIHRAAGPQLKEEC----RTLNGCETGDAKITAGYNLPAKLPI----NAKHVIHT-- 56
D A++ G + E G A + + I +++IH
Sbjct: 89 FDKALYNYFGGKPFETWFRNQLGGRYHTVGSATVVDLQRCLEEKTIECRDGIRYIIHVPT 148
Query: 57 ----VGPVGEKPALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSI 98
P+ LK+ ++ M + ++ +
Sbjct: 149 VVAPSAPIFNPQNPLKTGFEPVFNAMWNALMH------SPKDIDGL 188
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.001
Identities = 14/151 (9%), Positives = 37/151 (24%), Gaps = 46/151 (30%)
Query: 2 VW-REIIDGAIHRAAGPQLKEECRTLNGCETGDAKIT-----------------AGYNLP 43
V + + C+ L T ++T
Sbjct: 253 VQNAKAWNA---------FNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 44 AKLPINAK----------HVIHTVGP--VGEKPALLKSAYQRSLEVMKQNNLRSILEVMK 91
+ K + T P + ++ + K N + +++
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDKLTTIIE 360
Query: 92 QNNLRSIDILKGRQQKWRYRLCMTFSRNILI 122
S+++L+ + + + F + I
Sbjct: 361 ----SSLNVLEPAEYRKMFDRLSVFPPSAHI 387
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.049
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 11/71 (15%)
Query: 54 IHTVGPVG----EKPALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSIDIL----KGRQ 105
G +G + + + R+ K SIL+++ NN ++ I KG++
Sbjct: 1626 SQEQG-MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVI-NNPVNLTIHFGGEKGKR 1683
Query: 106 QKWRYRLCMTF 116
+ Y M F
Sbjct: 1684 IRENY-SAMIF 1693
Score = 30.0 bits (67), Expect = 0.23
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 28/84 (33%)
Query: 19 LKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPALLKSAYQRSLEVM 78
L+ + G TG YN+ N ++V G+ AL
Sbjct: 1826 LQYVVERV-GKRTGWLVEIVNYNVE-----NQQYVA-----AGDLRAL------------ 1862
Query: 79 KQNNLRSILEVMKQNNLRSIDILK 102
+ + ++L +K L+ IDI++
Sbjct: 1863 --DTVTNVLNFIK---LQKIDIIE 1881
Score = 27.7 bits (61), Expect = 1.4
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 23/95 (24%)
Query: 4 REIIDGA-IHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGE 62
++G IH A L+E TL ++ Y I A+ +
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTL----VKTKELIKNY-------ITARIMAKRPFDKKS 141
Query: 63 KPALLKSAYQRSLEVMK----QNN-------LRSI 86
AL ++ + + +++ Q N LR +
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH;
alpha-amylase inhibitors (AAI), lipid transfer (LT) and
SEED (SS) protein family; HET: MLR; 2.71A {Escherichia
coli}
Length = 500
Score = 26.8 bits (59), Expect = 2.7
Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 17/108 (15%)
Query: 7 IDGAIHRAAGPQLKEEC-RTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPA 65
++ A R L ++ R + E + ++ P + A
Sbjct: 377 LERANLRPCEQHLMQKIQRDEDSYERDPYSPSQ--------------DPYSPSPYDRRGA 422
Query: 66 LLKSAYQRSLEVMK--QNNLRSILEVMKQNNLRSIDILKGRQQKWRYR 111
+R + +NN R + E ++Q D L+GRQQ+ +++
Sbjct: 423 GSSQHQERCCNELNEFENNQRCMCEALQQIMENQSDRLQGRQQEQQFK 470
>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}
Length = 227
Score = 24.9 bits (53), Expect = 9.0
Identities = 10/30 (33%), Positives = 10/30 (33%)
Query: 18 QLKEECRTLNGCETGDAKITAGYNLPAKLP 47
L R TAGYN P KL
Sbjct: 179 TLASILREDGKVFDEKVYYTAGYNSPVKLL 208
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.407
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,986,940
Number of extensions: 100327
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 25
Length of query: 133
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 50
Effective length of database: 4,384,350
Effective search space: 219217500
Effective search space used: 219217500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.5 bits)