RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3800
         (133 letters)



>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 188

 Score = 57.0 bits (137), Expect = 1e-11
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 13/87 (14%)

Query: 7   IDGAIHRAAGPQLKEECRTL----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV-- 60
           +   + +  G +  E    L       E   A ++AG+ LP      AK VIH   PV  
Sbjct: 45  VGSTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSAGHGLP------AKFVIHCNSPVWG 98

Query: 61  -GEKPALLKSAYQRSLEVMKQNNLRSI 86
             +   LL+   +  L +     L+SI
Sbjct: 99  SDKCEELLEKTVKNCLALADDRKLKSI 125


>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 192

 Score = 54.8 bits (131), Expect = 8e-11
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 19/96 (19%)

Query: 7   IDGAIHRAAGP----------QLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHT 56
           +  AI +A             +   E    +  + G+  +T   NL  +     K+V HT
Sbjct: 43  VAYAIAKACAGDAGLYTEISKKAMREQFGRDYIDHGEVVVTPAMNLEER---GIKYVFHT 99

Query: 57  VGPV------GEKPALLKSAYQRSLEVMKQNNLRSI 86
           VGP+       E    L  A+   LE  ++  + SI
Sbjct: 100 VGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESI 135


>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 264

 Score = 53.9 bits (129), Expect = 3e-10
 Identities = 11/101 (10%), Positives = 30/101 (29%), Gaps = 20/101 (19%)

Query: 7   IDGAIHRAAGPQLKEECR--------------TLNGCETGDAKITAGYNLPAKLPINAKH 52
            D A++   G +  E                 T+   +    + T       +  I+   
Sbjct: 74  FDKALYNYFGGKPFETWFRNQLGGRYHTVGSATVVDLQRCLEEKTIECRDGIRYIIHVPT 133

Query: 53  VIHTVGPVGEKPALLKSAYQ------RSLEVMKQNNLRSIL 87
           V+    P+      LK+ ++       +  +    ++  ++
Sbjct: 134 VVAPSAPIFNPQNPLKTGFEPVFNAMWNALMHSPKDIDGLI 174


>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli
           [TaxId: 562]}
          Length = 172

 Score = 50.9 bits (121), Expect = 2e-09
 Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 7   IDGAIHRAAGPQLKEECRTLN----GCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGE 62
           +DGAIHRAAGP L + C  +      C TG A IT   +LPAK  ++        G    
Sbjct: 32  VDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHT-VGPVWRGGEQN 90

Query: 63  KPALLKSAYQRSLEVMKQNNLRSIL 87
           +  LL+ AY  SL ++  N+  S+ 
Sbjct: 91  EDQLLQDAYLNSLRLVAANSYTSVA 115


>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS
           coronavirus [TaxId: 227859]}
          Length = 168

 Score = 50.8 bits (121), Expect = 2e-09
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 8/70 (11%)

Query: 7   IDGAIHRAAGPQLKEEC----RTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGE 62
           + GA+++A    +++E     +       G + + +G+NL  K      HV+      GE
Sbjct: 48  VAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKK----CLHVVGPNLNAGE 103

Query: 63  KPALLKSAYQ 72
              LLK+AY+
Sbjct: 104 DIQLLKAAYE 113


>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides
           thetaiotaomicron [TaxId: 818]}
          Length = 154

 Score = 38.6 bits (89), Expect = 5e-05
 Identities = 10/92 (10%), Positives = 26/92 (28%), Gaps = 17/92 (18%)

Query: 7   IDGAIHRAAGP---QLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG-- 61
              A+ +         ++  ++      G  +     N          +V + +G  G  
Sbjct: 34  FVLALSKKWKMPEEAYRQWYKSQEEFTLGAVQFVNVEN--------KLYVANMIGQHGIY 85

Query: 62  ----EKPALLKSAYQRSLEVMKQNNLRSILEV 89
                 P +   A ++ L+ +    +     V
Sbjct: 86  KDSKGLPPIRYDAVRQCLKEVALFTIAHKASV 117


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 482,137
Number of extensions: 18840
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 7
Length of query: 133
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 57
Effective length of database: 1,364,116
Effective search space: 77754612
Effective search space used: 77754612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.4 bits)