BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3805
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H0L|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 96.3 bits (238), Expect = 5e-21, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 74/117 (63%)
Query: 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
ME+V +PD+ EEA +++L I++ G S M++G LR D NVS++ + + GTR
Sbjct: 152 MEIVTEPDIRTPEEARLFLEKLRNIMRYAGVSKADMEKGQLRCDINVSIRPKGSKEFGTR 211
Query: 61 SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQ 117
E+KN+ S R V A+ +EI RQ+ ++E+GG VV ETR +D T +T MR KE +
Sbjct: 212 VEIKNVNSFRFVQKALEYEIERQINVVEEGGEVVQETRTFDPQTGKTYPMRTKEEAE 268
>pdb|3AL0|B Chain B, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 482
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 75/117 (64%), Gaps = 6/117 (5%)
Query: 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
+E+V +PD+S EA +++L I++ LG ST M++GALR DAN+SV DT+ G +
Sbjct: 156 IEIVTEPDISSPREARVFMEKLRSIVRYLGVSTGDMEKGALRCDANISV---VDTETGRQ 212
Query: 61 S---EVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKE 114
S EVKN+ S R V A+ +E R V +E+G V ETR +D ATK TVSMR KE
Sbjct: 213 SNRVEVKNMNSFRFVERALEYEFERIVKAMERGEDVERETRGWDMATKITVSMRGKE 269
>pdb|3KFU|F Chain F, Crystal Structure Of The Transamidosome
pdb|3KFU|I Chain I, Crystal Structure Of The Transamidosome
Length = 466
Score = 84.7 bits (208), Expect = 1e-17, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
+ELV +PDL EEA ++ + ++Q LG S +EG LR D NVSV RR LGT+
Sbjct: 145 IELVTEPDLKTPEEARLFLQRIQALVQTLGISDASPEEGKLRADVNVSV-RRVGEPLGTK 203
Query: 61 SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKE 114
E+KN+ S + V A+ +EI RQ +L +G V T ++ + +T MR KE
Sbjct: 204 VEIKNLNSFKSVQRALEYEIRRQTEILRRGEKVKQATMGFEEGSGKTYPMRTKE 257
>pdb|2DF4|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2F2A|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
pdb|2G5H|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|B Chain B, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|B Chain B, The High Resolution Structure Of Gatcab
Length = 483
Score = 79.7 bits (195), Expect = 5e-16, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 71/114 (62%)
Query: 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
+E+V +PD+ +EA A +++L I+Q G S KM+EG+LR DAN+S++ K GT+
Sbjct: 149 IEIVSEPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTK 208
Query: 61 SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKE 114
+E+KN+ S V + +E RQ L GG + ETR +D +T +T+ MR KE
Sbjct: 209 AELKNLNSFNYVRKGLEYEEKRQEEELLNGGEIGQETRRFDESTGKTILMRVKE 262
>pdb|2D6F|C Chain C, Crystal Structure Of Glu-Trna(Gln) Amidotransferase In The
Complex With Trna(Gln)
pdb|2D6F|D Chain D, Crystal Structure Of Glu-Trna(Gln) Amidotransferase In The
Complex With Trna(Gln)
Length = 619
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
+E+ DP +SD ++ + + I Q L ++ K G +R D N+S++ G R
Sbjct: 183 VEITTDPSMSDPQQLREVAYQ---IGQILRSTRVKRGLGTIRQDLNISIRD------GAR 233
Query: 61 SEVKNIGSIRGVANAVNFEIVRQVALLE 88
EVK + + + V E+ RQ++L+E
Sbjct: 234 VEVKGVQDLDLIPEIVEREVKRQLSLVE 261
>pdb|1ZQ1|C Chain C, Structure Of Gatde Trna-Dependent Amidotransferase From
Pyrococcus Abyssi
pdb|1ZQ1|D Chain D, Structure Of Gatde Trna-Dependent Amidotransferase From
Pyrococcus Abyssi
Length = 633
Score = 30.0 bits (66), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
+E+ PD+ E+A + K + L+ T K G +R D NVS+ K G R
Sbjct: 188 IEISTTPDIHHPEQAKVVAKFIGDALRA--TKKVKRGLGTIRQDLNVSI------KGGAR 239
Query: 61 SEVKNIGSIRGVANAVNFEIVRQVALL 87
E+K + + + + E+ RQ+ LL
Sbjct: 240 IEIKGVQELDMIPIIIEREVERQLNLL 266
>pdb|3Q1S|I Chain I, Hiv-1 Neutralizing Antibody Z13e1 In Complex With Epitope
Display Protein
Length = 151
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 32 STCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSI 69
STC ++ L + NV + T KLG E+K IG +
Sbjct: 102 STCHIEGDDLHIQRNVQKLKDTVKKLGESGEIKAIGEL 139
>pdb|3DLQ|I Chain I, Crystal Structure Of The Il-22IL-22r1 Complex
Length = 151
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 32 STCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSI 69
STC ++ L + NV + T KLG E+K IG +
Sbjct: 102 STCHIEGDDLHIQRNVQKLKDTVKKLGESGEIKAIGEL 139
>pdb|3DGC|L Chain L, Structure Of Il-22IL-22r1
pdb|3DGC|M Chain M, Structure Of Il-22IL-22r1
Length = 141
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 32 STCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSI 69
STC ++ L + NV + T KLG E+K IG +
Sbjct: 92 STCHIEGDDLHIQRNVQKLKDTVKKLGESGEIKAIGEL 129
>pdb|1M4R|A Chain A, Crystal Structure Of Recombinant Human Interleukin-22
pdb|1M4R|B Chain B, Crystal Structure Of Recombinant Human Interleukin-22
pdb|3G9V|B Chain B, Crystal Structure Of A Soluble Decoy Receptor Il-22bp
Bound To Interleukin-22
pdb|3G9V|D Chain D, Crystal Structure Of A Soluble Decoy Receptor Il-22bp
Bound To Interleukin-22
Length = 151
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 32 STCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSI 69
STC ++ L + NV + T KLG E+K IG +
Sbjct: 102 STCHIEGDDLHIQRNVQKLKDTVKKLGESGEIKAIGEL 139
>pdb|1YKB|A Chain A, Crystal Structure Of Insect Cell Expressed Il-22
pdb|1YKB|B Chain B, Crystal Structure Of Insect Cell Expressed Il-22
pdb|1YKB|C Chain C, Crystal Structure Of Insect Cell Expressed Il-22
pdb|1YKB|D Chain D, Crystal Structure Of Insect Cell Expressed Il-22
pdb|1YKB|E Chain E, Crystal Structure Of Insect Cell Expressed Il-22
pdb|1YKB|F Chain F, Crystal Structure Of Insect Cell Expressed Il-22
Length = 142
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 32 STCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSI 69
STC ++ L + NV + T KLG E+K IG +
Sbjct: 93 STCHIEGDDLHIQRNVQKLKDTVKKLGESGEIKAIGEL 130
>pdb|2ZVR|A Chain A, Crystal Structure Of A D-Tagatose 3-Epimerase-Related
Protein From Thermotoga Maritima
pdb|2ZVR|B Chain B, Crystal Structure Of A D-Tagatose 3-Epimerase-Related
Protein From Thermotoga Maritima
Length = 290
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 6 DPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKN 65
DP + D E L +EL L + +GT + +G N ++++ ++ +EV
Sbjct: 64 DPSIVDWNEVKILSEELNLPICAIGTGQAYLADGLSLTHPNDEIRKKAIERVVKHTEVAG 123
Query: 66 -------IGSIRGVANAVNFE 79
IG +RG ++E
Sbjct: 124 MFGALVIIGLVRGRREGRSYE 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,960,840
Number of Sequences: 62578
Number of extensions: 87422
Number of successful extensions: 193
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 13
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)