Query psy3805
Match_columns 139
No_of_seqs 105 out of 881
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 17:54:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3805.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3805hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02934 GatB_N: GatB/GatE cat 100.0 8E-56 1.7E-60 369.7 10.5 135 1-135 150-287 (289)
2 PRK05477 gatB aspartyl/glutamy 100.0 2.1E-54 4.6E-59 380.5 13.7 136 1-136 151-289 (474)
3 TIGR00133 gatB glutamyl-tRNA(G 100.0 2.6E-54 5.7E-59 380.3 13.9 136 1-136 154-292 (478)
4 COG0064 GatB Asp-tRNAAsn/Glu-t 100.0 1.8E-53 3.9E-58 374.2 13.4 136 1-136 156-294 (483)
5 PLN02751 glutamyl-tRNA(Gln) am 100.0 1.9E-53 4.2E-58 379.1 12.9 135 1-135 217-356 (544)
6 KOG2438|consensus 100.0 3.8E-50 8.2E-55 349.5 11.7 134 1-135 174-310 (505)
7 PRK04028 glutamyl-tRNA(Gln) am 100.0 2.6E-39 5.6E-44 292.6 13.0 80 1-88 186-265 (630)
8 TIGR00134 gatE_arch glutamyl-t 100.0 3.7E-34 8.1E-39 258.8 11.9 85 1-93 183-274 (620)
9 COG2511 GatE Archaeal Glu-tRNA 99.7 4.7E-17 1E-21 145.7 9.1 80 1-88 186-265 (631)
10 COG2511 GatE Archaeal Glu-tRNA 74.6 5.4 0.00012 37.3 4.7 61 71-135 385-446 (631)
11 PF00159 Hormone_3: Pancreatic 54.5 27 0.00057 21.1 3.5 23 8-30 10-32 (36)
12 PF04262 Glu_cys_ligase: Gluta 51.8 11 0.00024 33.3 2.3 27 1-28 63-89 (377)
13 cd00126 PAH Pancreatic Hormone 42.4 51 0.0011 19.9 3.4 23 8-30 10-32 (36)
14 cd00563 Dtyr_deacylase D-Tyros 39.6 52 0.0011 25.4 4.0 44 6-52 90-136 (145)
15 TIGR00256 D-tyrosyl-tRNA(Tyr) 36.0 76 0.0016 24.5 4.4 44 6-52 90-136 (145)
16 PF11548 Receptor_IA-2: Protei 34.7 57 0.0012 23.5 3.3 63 3-77 7-69 (91)
17 PRK02471 bifunctional glutamat 34.4 36 0.00078 32.5 2.9 29 1-30 63-91 (752)
18 PRK05273 D-tyrosyl-tRNA(Tyr) d 34.0 82 0.0018 24.4 4.3 44 6-52 90-136 (147)
19 cd02685 MIT_C MIT_C; domain fo 33.7 67 0.0015 25.0 3.8 32 1-32 55-86 (148)
20 PRK02107 glutamate--cysteine l 33.1 38 0.00083 31.2 2.7 28 1-29 65-92 (523)
21 smart00309 PAH Pancreatic horm 31.4 96 0.0021 18.7 3.4 23 8-30 10-32 (36)
22 TIGR03642 cas_csx13 CRISPR-ass 31.2 67 0.0014 24.1 3.3 25 6-30 61-85 (124)
23 TIGR01434 glu_cys_ligase gluta 30.9 44 0.00095 30.8 2.7 50 1-52 61-114 (512)
24 TIGR02050 gshA_cyan_rel unchar 30.4 66 0.0014 26.8 3.5 28 1-29 47-74 (287)
25 PF04107 GCS2: Glutamate-cyste 29.9 64 0.0014 26.5 3.4 28 1-29 46-73 (288)
26 COG1490 Dtd D-Tyr-tRNAtyr deac 28.4 1.1E+02 0.0025 23.8 4.2 44 6-52 90-136 (145)
27 PRK10628 LigB family dioxygena 27.3 47 0.001 27.6 2.1 29 96-131 90-118 (246)
28 PF10979 DUF2786: Protein of u 26.7 1.2E+02 0.0027 18.5 3.4 24 10-33 19-42 (43)
29 TIGR02887 spore_ger_x_C germin 26.5 57 0.0012 27.5 2.5 50 36-85 263-312 (371)
30 PF15577 Spc7_C2: Spc7_C2 26.0 1.2E+02 0.0025 20.2 3.5 47 13-64 12-58 (67)
31 PF02686 Glu-tRNAGln: Glu-tRNA 26.0 97 0.0021 19.9 3.1 21 11-31 2-22 (72)
32 PF12441 DUF3680: Protein of u 25.3 71 0.0015 19.7 2.2 26 6-32 5-30 (42)
33 PRK13515 carboxylate-amine lig 23.3 92 0.002 26.8 3.3 28 1-29 52-79 (371)
34 PF05794 Tcp11: T-complex prot 23.1 53 0.0012 28.4 1.8 33 71-103 169-201 (441)
35 KOG0852|consensus 22.2 1E+02 0.0022 25.1 3.1 35 6-40 144-178 (196)
36 PF13299 CPSF100_C: Cleavage a 22.2 2.4E+02 0.0052 21.6 5.1 45 19-68 102-147 (161)
37 COG0052 RpsB Ribosomal protein 22.0 52 0.0011 27.8 1.4 41 85-134 8-48 (252)
38 PF06319 DUF1052: Protein of u 21.7 1E+02 0.0022 24.3 3.0 54 7-65 13-69 (157)
39 cd00677 S15_NS1_EPRS_RNA-bind 21.6 1.4E+02 0.0031 17.9 3.0 23 8-30 24-46 (46)
40 PF08915 tRNA-Thr_ED: Archaea- 21.3 1.2E+02 0.0026 23.4 3.1 27 7-33 85-111 (138)
41 COG0455 flhG Antiactivator of 20.7 1.1E+02 0.0023 25.5 3.0 23 3-25 140-162 (262)
42 cd06597 GH31_transferase_CtsY 20.6 2.6E+02 0.0056 23.8 5.4 81 6-100 153-235 (340)
43 COG0105 Ndk Nucleoside diphosp 20.5 51 0.0011 25.4 1.0 46 3-51 66-112 (135)
44 PF14223 UBN2: gag-polypeptide 20.3 61 0.0013 22.7 1.3 72 12-83 40-114 (119)
No 1
>PF02934 GatB_N: GatB/GatE catalytic domain; InterPro: IPR006075 Glutamyl-tRNA(Gln) amidotransferase subunit B (6.3.5 from EC) [] is a microbial enzyme that furnishes a means for formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The enzyme is composed of three subunits: A (an amidase), B and C. It also exists in eukaryotes as a protein targeted to the mitochondria. ; GO: 0016874 ligase activity; PDB: 3H0M_H 3H0R_K 3H0L_K 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B 2G5H_B 2DQN_B ....
Probab=100.00 E-value=8e-56 Score=369.70 Aligned_cols=135 Identities=43% Similarity=0.624 Sum_probs=115.1
Q ss_pred CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI 80 (139)
Q Consensus 1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~ 80 (139)
|||||+|||+|++||++|+++|+++|+|+|+|+|+||+|+|||||||||++.+...+|+||||||||||++|++||+||+
T Consensus 150 iEIVTePd~~s~~EA~~~~~~L~~il~~lgvs~~~me~GslR~DvNVSv~~~g~~~~g~rvEIKNlnS~~~i~~AI~~Ei 229 (289)
T PF02934_consen 150 IEIVTEPDIRSPEEAAAFLKKLRRILRYLGVSDGNMEEGSLRCDVNVSVRPKGEEKFGTRVEIKNLNSFRFIEKAIEYEI 229 (289)
T ss_dssp EEEEE-TTB-SHHHHHHHHHHHHHHHHHHTSB--SGGGTSEEEEEEEEECETTSSSTS-EEEEEEE-SHHHHHHHHHHHH
T ss_pred eEEeeCCCCCCHHHHHHHHHHHHHHHHhcCcccCccccCcEEeeceeeecCCCCCCCcceEEEecccCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred HHHHHHHHcCCeeecccceeEcCCCeeeccccCCCCCCCCCC---Cccccccchhhhh
Q psy3805 81 VRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQVKPRS---HFKTLSLSLTLLN 135 (139)
Q Consensus 81 ~RQ~~~l~~G~~v~~ETR~~d~~~~~T~~~R~KE~~~DYr~~---~~p~~~l~~~~~~ 135 (139)
.||.++|+.|+.|.||||+||+.+++|++||+||.+.||||+ +||.|.++++.++
T Consensus 230 ~RQ~~~l~~g~~v~~eTR~~d~~~~~T~~mR~Ke~~~DYRy~pepdlppi~i~~~~i~ 287 (289)
T PF02934_consen 230 ERQIELLENGGEVEQETRGWDEDKGETVSMRSKEGAADYRYFPEPDLPPIVISDEWIE 287 (289)
T ss_dssp HHHHHHHHHTT---EEEEEEETTTTEEEEEEEESSS----EEE-TTS--EE--HHHHH
T ss_pred HHHHHHHHcCCCeeeecccccCCCCcEeecccCCCccCcCcccCCCCCcEEcCHHHHh
Confidence 999999999999999999999999999999999999999876 9999999999875
No 2
>PRK05477 gatB aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated
Probab=100.00 E-value=2.1e-54 Score=380.54 Aligned_cols=136 Identities=43% Similarity=0.600 Sum_probs=132.3
Q ss_pred CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI 80 (139)
Q Consensus 1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~ 80 (139)
|||||+|||+||+||++|+++|+++|+|+|+|||+|++|+|||||||||++.|+..+|+||||||||||++|++||+||+
T Consensus 151 iEIVTePd~~s~~eA~~~~~~L~~ilr~~g~sd~~me~GslR~DvNVSir~~g~~~~G~RvEIKNlnS~~~i~~Ai~yEi 230 (474)
T PRK05477 151 IEIVSEPDMRSPEEARAYLKKLRSILRYLGISDGNMEEGSLRCDANVSVRPKGQEEFGTRVEIKNLNSFRFVEKAIEYEI 230 (474)
T ss_pred EEEeccCCCCCHHHHHHHHHHHHHHHHHhCCCcCccccCceEEeeeEEeccCCcccCCceeEEeccccHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999998789999999999999999999999999
Q ss_pred HHHHHHHHcCCeeecccceeEcCCCeeeccccCCCCCCCCCC---Cccccccchhhhhh
Q psy3805 81 VRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQVKPRS---HFKTLSLSLTLLNL 136 (139)
Q Consensus 81 ~RQ~~~l~~G~~v~~ETR~~d~~~~~T~~~R~KE~~~DYr~~---~~p~~~l~~~~~~~ 136 (139)
.||.++|+.|+.|.||||+||+++|+|++||+||++.||||+ +||.|.++++.++-
T Consensus 231 ~RQ~~ll~~G~~v~qETR~~d~~~g~T~~mR~Ke~a~DYRyfPepDlppi~i~~~~i~~ 289 (474)
T PRK05477 231 ERQIEILESGGEVVQETRLFDEDKGETRSMRSKEEAHDYRYFPEPDLPPLEISDEWIEE 289 (474)
T ss_pred HHHHHHHHcCCCeecccCCcCCCCCeeeecccCCcccccCCCCCCCCCceecCHHHHHH
Confidence 999999999999999999999999999999999999999887 99999999988764
No 3
>TIGR00133 gatB glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit. The heterotrimer GatABC is responsible for transferring the NH2 group that converts Glu to Gln, or Asp to Asn after the Glu or Asp has been ligated to the tRNA for Gln or Asn, respectively. In Lactobacillus, GatABC is responsible only for tRNA(Gln). In the Archaea, GatABC is responsible only for tRNA(Asn), while GatDE is responsible for tRNA(Gln). In lineages that include Thermus, Chlamydia, or Acidithiobacillus, the GatABC complex catalyzes both.
Probab=100.00 E-value=2.6e-54 Score=380.25 Aligned_cols=136 Identities=39% Similarity=0.582 Sum_probs=132.3
Q ss_pred CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI 80 (139)
Q Consensus 1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~ 80 (139)
|||||+|||+||+||++|+++||++|+|+|+|||+||+|+|||||||||++.|...+|+||||||||||++|++||+||+
T Consensus 154 iEIVTePd~~s~eeA~~~~~~L~~ilr~~gvsdg~me~GslR~DvNVSir~~g~~~~g~RvEIKNlnS~~~i~kAI~yE~ 233 (478)
T TIGR00133 154 IEIVTKPDINSPKEARAFLKKLRQILRYLGISDGNLEEGSMRCDVNVSIRLKGQEHLGTRVEIKNINSFKGIEKAIKYEI 233 (478)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcccCceeeeeeeecccCCCCCCcCeeEEeCcccHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred HHHHHHHHcCCeeecccceeEcCCCeeeccccCCCCCCCCCC---Cccccccchhhhhh
Q psy3805 81 VRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQVKPRS---HFKTLSLSLTLLNL 136 (139)
Q Consensus 81 ~RQ~~~l~~G~~v~~ETR~~d~~~~~T~~~R~KE~~~DYr~~---~~p~~~l~~~~~~~ 136 (139)
.||.++|+.|++|.||||+||+.+++|++||+||++.||||+ +||.|.++++.++-
T Consensus 234 ~RQ~~ll~~G~~i~qeTr~~d~~~~~T~~mR~Ke~a~DYRyfPEpDLppi~i~~~~i~~ 292 (478)
T TIGR00133 234 ERQVKALIRGEEVVQETRTFDEKSNITVSMRSKETSIDYRYFPEPDLPPINIDELLVKE 292 (478)
T ss_pred HHHHHHHHcCCCeEeeeccccCCCCeEeecccCCCccccCCCCCCCCCceecCHHHHHH
Confidence 999999999999999999999999999999999999999987 99999999987764
No 4
>COG0064 GatB Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-53 Score=374.22 Aligned_cols=136 Identities=43% Similarity=0.636 Sum_probs=132.9
Q ss_pred CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI 80 (139)
Q Consensus 1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~ 80 (139)
|||||+|||+||+||++|+++||.+|+|+|||||+||+|+|||||||||++.|+..+|+||||||||||++|++||+||+
T Consensus 156 iEIVtePdirs~~eA~ayl~~Lr~ilrylgisd~~meeGsmR~DaNvSvr~~g~~~~GtrvEiKNiNS~~~v~kAi~yE~ 235 (483)
T COG0064 156 IEIVTEPDIRSPEEARAYLKKLRSILRYLGISDGNMEEGSMRCDANVSVRPKGQEEFGTRVEIKNLNSFRNVEKAIEYEI 235 (483)
T ss_pred eeeecccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcccCceEeeeeeeeccccccccCceeeeecCccHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeecccceeEcCCCeeeccccCCCCCCCCCC---Cccccccchhhhhh
Q psy3805 81 VRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQVKPRS---HFKTLSLSLTLLNL 136 (139)
Q Consensus 81 ~RQ~~~l~~G~~v~~ETR~~d~~~~~T~~~R~KE~~~DYr~~---~~p~~~l~~~~~~~ 136 (139)
.||+++++.|+.+.||||+||+.+|.|++||+||++.||||| +||-+.++++.++-
T Consensus 236 ~RQ~~~l~~g~~i~qeTR~~d~~~g~T~~mR~KE~a~DYRYfpePDl~p~~is~~~i~~ 294 (483)
T COG0064 236 QRQIELLESGGEIEQETRRFDEATGKTVSMRSKEEAEDYRYFPEPDLPPLEISDEWIEE 294 (483)
T ss_pred HHHHHHHHcCCCeeehccccccCCCeEeeccccccccccccCCCCCcCCccCCHHHHHH
Confidence 999999999999999999999999999999999999999887 99999999998864
No 5
>PLN02751 glutamyl-tRNA(Gln) amidotransferase
Probab=100.00 E-value=1.9e-53 Score=379.15 Aligned_cols=135 Identities=37% Similarity=0.578 Sum_probs=131.8
Q ss_pred CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI 80 (139)
Q Consensus 1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~ 80 (139)
|||||+|||+||+||++|+++|+++|+|+|+|||+||+|+|||||||||++.|+..+|+||||||||||++|++||+||+
T Consensus 217 IEIVTePdi~speEA~a~l~~L~~ilr~lgisdg~meeGslRcDvNVSvr~~g~~~~GtRvEIKNlNS~~~v~kAI~yEi 296 (544)
T PLN02751 217 LEIVSEPDMRTGIEAAEYGAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQEEFGTKVEIKNMNSFSAMSRAIDFEI 296 (544)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHHHHHhCcccCCcccCccccceeeccccCCCCCCCCeEEEeCCccHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred HHHHHHHHcC--CeeecccceeEcCCCeeeccccCCCCCCCCCC---Cccccccchhhhh
Q psy3805 81 VRQVALLEQG--GVVVNETRAYDAATKRTVSMRDKENIQVKPRS---HFKTLSLSLTLLN 135 (139)
Q Consensus 81 ~RQ~~~l~~G--~~v~~ETR~~d~~~~~T~~~R~KE~~~DYr~~---~~p~~~l~~~~~~ 135 (139)
.||+++|+.| ++|.||||+||+.+++|++||+||.+.||||+ +||-|.++++.++
T Consensus 297 ~RQ~~ll~~G~~~~i~qeTR~wd~~~~~Tv~mR~KE~a~DYRyfPEPDLppi~i~~e~i~ 356 (544)
T PLN02751 297 SRQILLHRQGQGDEIVQETRLWDEGAQKTVTMRKKEGLADYRYFPEPDLPEVVLTEEYVD 356 (544)
T ss_pred HHHHHHHHcCCCCcccccccCcCCCCCeEeecccccchhhcCcCCCCCCCceecCHHHHH
Confidence 9999999999 99999999999999999999999999999987 9999999998775
No 6
>KOG2438|consensus
Probab=100.00 E-value=3.8e-50 Score=349.53 Aligned_cols=134 Identities=51% Similarity=0.748 Sum_probs=129.9
Q ss_pred CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI 80 (139)
Q Consensus 1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~ 80 (139)
+||||+|||++++||++|+++||.||+++|+|+|+||+|+|||||||||++. +.++|+|||||||||+|+|-+||+|||
T Consensus 174 lEiVt~Pdf~~~~eaa~fv~elqlIlr~lgis~g~meeG~lRvDvNiSI~~~-g~~lG~RvElKNLnsirsI~~AI~yEi 252 (505)
T KOG2438|consen 174 LEIVTKPDFSDGIEAAAFVKELQLILRHLGISSGNMEEGALRVDVNISIAPD-GSELGTRVELKNLNSIRSISNAIDYEI 252 (505)
T ss_pred EEEecCcccccHHHHHHHHHHHHHHHHHhcccccchhcCceEEeeeeEecCC-CccceeeeeeccchhHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999998 559999999999999999999999999
Q ss_pred HHHHHHHHcCCeeecccceeEcCCCeeeccccCCCCCCCCCC---Cccccccchhhhh
Q psy3805 81 VRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQVKPRS---HFKTLSLSLTLLN 135 (139)
Q Consensus 81 ~RQ~~~l~~G~~v~~ETR~~d~~~~~T~~~R~KE~~~DYr~~---~~p~~~l~~~~~~ 135 (139)
.||.+++++|+.+..|||+||...|+|++||+||+.+||||+ |+|-+.|.+..++
T Consensus 253 ~RQvel~~nGg~i~nETR~wd~~~~rTvsmRdKEt~~DYRfmPEPnLPpl~L~~~~v~ 310 (505)
T KOG2438|consen 253 QRQVELLNNGGAIQNETRGWDSEGGRTVSMRDKETLQDYRFMPEPNLPPLILHGKYVD 310 (505)
T ss_pred HHHHHHHhcCCccccccccccccCCceEeecccccccceeccCCCCCCCeeecHHHHH
Confidence 999999999999999999999999999999999999999987 9999999988765
No 7
>PRK04028 glutamyl-tRNA(Gln) amidotransferase subunit E; Validated
Probab=100.00 E-value=2.6e-39 Score=292.59 Aligned_cols=80 Identities=30% Similarity=0.530 Sum_probs=77.2
Q ss_pred CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI 80 (139)
Q Consensus 1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~ 80 (139)
|||||+|||+||+||++|+++|+++|+|+|+| +|++|+|||||||||+. |+||||||||||++|++||+||+
T Consensus 186 iEIvtePd~~s~~ea~~~~~~l~~il~~~g~~--~~e~GslR~DvNvSv~~------g~rvEiKnlns~~~v~~ai~yE~ 257 (630)
T PRK04028 186 IEISTAPDIHSPEQAKEVALKIGMLLRSTGKV--KRGLGTIRQDVNVSIAG------GARVEIKGVQKLDLIPKVVEYEV 257 (630)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHHHhCCC--CccCCCeeEEEEEeccC------CceeeecCCCcHHHHHHHHHHHH
Confidence 79999999999999999999999999999987 89999999999999983 89999999999999999999999
Q ss_pred HHHHHHHH
Q psy3805 81 VRQVALLE 88 (139)
Q Consensus 81 ~RQ~~~l~ 88 (139)
.||.+++.
T Consensus 258 ~RQ~~llt 265 (630)
T PRK04028 258 QRQLNLLK 265 (630)
T ss_pred HHHHHHHH
Confidence 99999886
No 8
>TIGR00134 gatE_arch glutamyl-tRNA(Gln) amidotransferase, subunit E. The Archaea have an Asp-tRNA(Asn) amidotransferase instead of an Asp--tRNA ligase, but the genes have not been identified. It is likely that this protein replaces gatB in Asp-tRNA(Asn) amidotransferase but that both enzymes share gatA.
Probab=100.00 E-value=3.7e-34 Score=258.78 Aligned_cols=85 Identities=35% Similarity=0.540 Sum_probs=80.5
Q ss_pred CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI 80 (139)
Q Consensus 1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~ 80 (139)
|||||+|||+||+||++|+++|+++|+|+| +++|++|+|||||||||+. |+||||||||||++|++||+||+
T Consensus 183 iEIvTePdi~sp~ea~~~~~~l~~ilr~~g--~~~~~~GsiR~DvNvSi~~------G~rvEIKnvns~~~i~~ai~~E~ 254 (620)
T TIGR00134 183 VEITTDPDISDPQMAKEVAYRIGQILRSTG--KVKRGLGTIRQDLNISIRD------GARVEVKGVQDLDLIPKIVEREV 254 (620)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHHHhC--CCCcCCCCeeeeEEEeccC------CceeeecCCCcHHHHHHHHHHHH
Confidence 799999999999999999999999999999 5578899999999999985 89999999999999999999999
Q ss_pred HHHHHHHH-------cCCee
Q psy3805 81 VRQVALLE-------QGGVV 93 (139)
Q Consensus 81 ~RQ~~~l~-------~G~~v 93 (139)
.||.++++ .|+.+
T Consensus 255 ~RQ~~ll~~~~~l~~~g~~v 274 (620)
T TIGR00134 255 KRQLNLLKIRDELQERGAVV 274 (620)
T ss_pred HHHHHHHHhhhhHhhcCCcc
Confidence 99999999 78765
No 9
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=4.7e-17 Score=145.65 Aligned_cols=80 Identities=30% Similarity=0.542 Sum_probs=74.5
Q ss_pred CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI 80 (139)
Q Consensus 1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~ 80 (139)
|||-|+||++||++|++.+..|..+|+..|-..-. -|++|+|+|||++. |.|||||+++.+..|.+.|+||+
T Consensus 186 IEIsT~PdI~sp~~A~evA~~IG~~lrsTGkvKrg--lgTIRQDvNvSI~~------GarvEIKGVq~LdlI~~vv~yEv 257 (631)
T COG2511 186 IEISTEPDIRSPEQAREVAERIGYILRSTGKVKRG--LGTIRQDVNVSIKG------GARVEIKGVQDLDLIPDVVEYEV 257 (631)
T ss_pred EEeecCCCCCCHHHHHHHHHHHHHHHHHhcccccc--CcceeeeeeeeecC------CceEEecCcchhhhHHHHHHHHH
Confidence 69999999999999999999999999999855443 69999999999988 79999999999999999999999
Q ss_pred HHHHHHHH
Q psy3805 81 VRQVALLE 88 (139)
Q Consensus 81 ~RQ~~~l~ 88 (139)
.||.++|+
T Consensus 258 ~RQ~nLlk 265 (631)
T COG2511 258 ERQLNLLK 265 (631)
T ss_pred HHHHHHHH
Confidence 99999884
No 10
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]
Probab=74.56 E-value=5.4 Score=37.27 Aligned_cols=61 Identities=23% Similarity=0.255 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecccceeEcCCCeeeccccCCCC-CCCCCCCccccccchhhhh
Q psy3805 71 GVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENI-QVKPRSHFKTLSLSLTLLN 135 (139)
Q Consensus 71 ~I~~AI~yE~~RQ~~~l~~G~~v~~ETR~~d~~~~~T~~~R~KE~~-~DYr~~~~p~~~l~~~~~~ 135 (139)
.+.+|++.=+.|-...++- +..|||+-.++ |+|..||---++ .=|++-+||.+..++++++
T Consensus 385 ~~~~a~~~V~~Ra~~ai~g---vpeETR~a~~D-GtT~yLRPlPGaaRMYPETDIPpi~i~~~~l~ 446 (631)
T COG2511 385 RAKRALEAVIERAKEAIEG---VPEETRGALPD-GTTVYLRPLPGAARMYPETDIPPIRIDEELLE 446 (631)
T ss_pred HHHHHHHHHHHHHHHHHcC---CCHhhccCCCC-CCceeecCCCCccccCCcCCCCCcccCHHHHH
Confidence 4566777777777665544 89999999886 789999987654 4589999999999999886
No 11
>PF00159 Hormone_3: Pancreatic hormone peptide; InterPro: IPR001955 Pancreatic hormone (PP) [] is a peptide synthesized in pancreatic islets of Langherhans, which acts as a regulator of pancreatic and gastrointestinal functions. The hormone is produced as a larger propeptide, which is enzymatically cleaved to yield the mature active peptide: this is 36 amino acids in length [] and has an amidated C terminus []. The hormone has a globular structure, residues 2-8 forming a left-handed poly-proline-II-like helix, residues 9-13 a beta turn, and 14-32 an alpha-helix,held close to the first helix by hydrophobic interactions []. Unlike glucagon, another peptide hormone, the structure of pancreatic peptide is preserved in aqueous solution []. Both N and C termini are required for activity: receptor binding and activation functions may reside in the N and C termini respectively []. Pancreatic hormone is part of a wider family of active peptides that includes: Neuropeptide Y (NPY) [], one of the most abundant peptides in the mammalian nervous system. NPY is implicated in the control of feeding and the secretion of the gonadotrophin-releasing hormone. Peptide YY (PYY) []. PPY is a gut peptide that inhibits exocrine pancreatic secretion, has a vasoconstrictory action and inhibits jejunal and colonic mobility. Various NPY and PYY-like polypeptides from fish and amphibians [, ]. Neuropeptide F (NPF) from invertebrates such as worms and snail. Skin peptide Tyr-Tyr (SPYY) from the frog Phyllomedusa bicolor. SPYY shows a large spectra of antibacterial and antifungal activity. All these peptides are 36 to 39 amino acids long. Like most active peptides, their C-terminal is amidated and they are synthesized as larger protein precursors.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LJV_A 1BBA_A 1V1D_A 1PPT_A 2H3T_A 2H4B_A 2BF9_A 2H3S_B 1K8V_A 2DF0_A ....
Probab=54.48 E-value=27 Score=21.09 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhC
Q psy3805 8 DLSDGEEAAALVKELILILQCLG 30 (139)
Q Consensus 8 d~~s~eEA~~~~~~L~~iL~~lg 30 (139)
|+.|+||.+.|+.+|+.-+..+|
T Consensus 10 ~~aspeel~~Y~~~L~~Y~~lvt 32 (36)
T PF00159_consen 10 DFASPEELAQYYAALRHYINLVT 32 (36)
T ss_dssp TTSSHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHc
Confidence 78999999999999998776554
No 12
>PF04262 Glu_cys_ligase: Glutamate-cysteine ligase ; InterPro: IPR007370 This is a group of bacterial glutamate-cysteine ligases that carry out the first step of the glutathione biosynthesis pathway according to the following equation: ATP + L-glutamate + L-cysteine = ADP + phosphate + L-glutamyl-L-cysteine (L-aminohexanoate can replace glutamate). ; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process; PDB: 3LN6_A 3LN7_B 1VA6_B 2D33_B 1V4G_B 2D32_A 3NZT_A.
Probab=51.82 E-value=11 Score=33.29 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=23.3
Q ss_pred CeEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy3805 1 MELVFDPDLSDGEEAAALVKELILILQC 28 (139)
Q Consensus 1 iEIVTePd~~s~eEA~~~~~~L~~iL~~ 28 (139)
+|+|| |-..|+++|..|+..|..++..
T Consensus 63 lE~IT-P~~~s~~~al~~L~~Lh~~v~~ 89 (377)
T PF04262_consen 63 LELIT-PPFDSIEEALQFLEDLHQFVRR 89 (377)
T ss_dssp EEEEE-EEBSSHHHHHHHHHHHHHHHHH
T ss_pred HHhhc-CCccCHHHHHHHHHHHHHHHHH
Confidence 59999 4558999999999999999863
No 13
>cd00126 PAH Pancreatic Hormone domain, a regulator of pancreatic and gastrointestinal functions; neuropeptide Y (NPY)b, peptide YY (PYY), and pancreatic polypetide (PP) are closely related; propeptide is enzymatically cleaved to yield the mature active peptide with amidated C-terminal ends; receptor binding and activation functions may reside in the N- and C-termini respectively; occurs in neurons, intestinal endocrine cells, and pancreas; exist as monomers and dimers
Probab=42.36 E-value=51 Score=19.91 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhC
Q psy3805 8 DLSDGEEAAALVKELILILQCLG 30 (139)
Q Consensus 8 d~~s~eEA~~~~~~L~~iL~~lg 30 (139)
|+.|+||.+.|++.|++-+..+|
T Consensus 10 ~~a~~eel~~Y~~~L~~Yinlit 32 (36)
T cd00126 10 DDASPEELRQYLAALREYINLIT 32 (36)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHc
Confidence 78899999999999998776554
No 14
>cd00563 Dtyr_deacylase D-Tyrosyl-tRNAtyr deacylases; a class of tRNA-dependent hydrolases which are capable of hydrolyzing the ester bond of D-Tyrosyl-tRNA reducing the level of cellular D-Tyrosine while recycling the peptidyl-tRNA; found in bacteria and in eukaryotes but not in archea; beta barrel-like fold structure; forms homodimers in which two surface cavities serve as the active site for tRNA binding
Probab=39.57 E-value=52 Score=25.44 Aligned_cols=44 Identities=23% Similarity=0.370 Sum_probs=37.1
Q ss_pred CCCCC---CHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccC
Q psy3805 6 DPDLS---DGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRR 52 (139)
Q Consensus 6 ePd~~---s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~ 52 (139)
.|+|+ +|++|..+-.++-..++..+ ..-+.|.+-.|-.||+.++
T Consensus 90 rP~F~~a~~~e~A~~ly~~fv~~l~~~~---~~V~~G~FGa~M~V~l~ND 136 (145)
T cd00563 90 RPSFSAAAPPDKAEPLYESFVELLREKG---IKVETGVFGAMMQVSLVND 136 (145)
T ss_pred CCCccccCCHHHHHHHHHHHHHHHHHcC---CcceeCccCCCcEEEEEEC
Confidence 58888 89999999888888888765 3566899999999999886
No 15
>TIGR00256 D-tyrosyl-tRNA(Tyr) deacylase. This homodimeric enzyme appears able to cleave any D-amino acid (and glycine, which does not have distinct D/L forms) from charged tRNA. The name reflects characterization with respect to D-Tyr on tRNA(Tyr) as established in the literature, but substrate specificity seems much broader.
Probab=36.03 E-value=76 Score=24.51 Aligned_cols=44 Identities=25% Similarity=0.384 Sum_probs=36.9
Q ss_pred CCCCC---CHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccC
Q psy3805 6 DPDLS---DGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRR 52 (139)
Q Consensus 6 ePd~~---s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~ 52 (139)
.|+|+ .|++|..+-.++-..|+..+ ..-+.|.+-.|-.||+-++
T Consensus 90 rPsF~~a~~~~~A~~ly~~fv~~l~~~~---~~V~~G~FGa~M~V~l~Nd 136 (145)
T TIGR00256 90 RPSFSKGASPDRAEELYEYFVELCREKG---MKVQTGRFAADMQVSLTND 136 (145)
T ss_pred CCCccccCCHHHHHHHHHHHHHHHHhcC---CCceECccCCCcEEEEEEC
Confidence 58888 89999999888888888766 3456899999999999886
No 16
>PF11548 Receptor_IA-2: Protein-tyrosine phosphatase receptor IA-2; InterPro: IPR021613 IA-2 is a protein-tyrosine phosphatase receptor that upon exocytosis, the cytoplasmic domain is cleaved and moves to the nucleus where it enhances transcription of the insulin gene. The mature exodomain of IA-2 participates in adhesion to the extracellular matrix and is self-proteolyzed in vitro by reactive oxygen species which may be a new shedding mechanism. ; PDB: 2QT7_B 3N01_B 3N4W_B 3NG8_A.
Probab=34.75 E-value=57 Score=23.48 Aligned_cols=63 Identities=22% Similarity=0.267 Sum_probs=35.0
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHH
Q psy3805 3 LVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVN 77 (139)
Q Consensus 3 IVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~ 77 (139)
|+|+-|..++++-..++..|-++| +++.+-+ .|+||-++ .-.|--|---||+|.-.-.++|..
T Consensus 7 Ivt~nd~ls~~~G~~l~~~la~~l---~l~s~~F--------~~i~V~g~-avTFrv~~N~~n~taadVa~~a~~ 69 (91)
T PF11548_consen 7 IVTGNDPLSWDEGSRLMEKLAELL---HLPSSSF--------INISVVGP-AVTFRVRPNNKNLTAADVAKQAVD 69 (91)
T ss_dssp EEES-TT--HHHHHHHHHHHHHHH---TS-GGGE--------EEEEEETT-EEEEEE---TT---HHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHh---CCCcccc--------eeeeecCc-eEEEEeccCcCCCCHHHHHHHHHH
Confidence 899989999999999999998887 4554433 34454332 111222334589998877777664
No 17
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=34.44 E-value=36 Score=32.49 Aligned_cols=29 Identities=21% Similarity=0.114 Sum_probs=24.2
Q ss_pred CeEecCCCCCCHHHHHHHHHHHHHHHHHhC
Q psy3805 1 MELVFDPDLSDGEEAAALVKELILILQCLG 30 (139)
Q Consensus 1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lg 30 (139)
||++| |-..|.+||..|+..|+..+...=
T Consensus 63 lE~iT-p~~~~~~~~~~~L~~l~~~~~~~~ 91 (752)
T PRK02471 63 LELIT-PVADSIEEVYRFLGALHDVASRSL 91 (752)
T ss_pred HHhcC-CCCCCHHHHHHHHHHHHHHHHHhh
Confidence 68999 556779999999999999987553
No 18
>PRK05273 D-tyrosyl-tRNA(Tyr) deacylase; Provisional
Probab=34.00 E-value=82 Score=24.43 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=37.2
Q ss_pred CCCCCC---HHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccC
Q psy3805 6 DPDLSD---GEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRR 52 (139)
Q Consensus 6 ePd~~s---~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~ 52 (139)
.|+|+. |++|..+-.++-..|+..+. .-+.|.+-.|-+||+.++
T Consensus 90 rP~F~~a~~~~~A~~ly~~f~~~l~~~~~---~V~~G~FGa~M~V~l~ND 136 (147)
T PRK05273 90 RPSFSAAAPPEEAEPLYDYFVEALRAQGV---PVETGRFGADMQVSLVND 136 (147)
T ss_pred CCCccccCCHHHHHHHHHHHHHHHHHcCC---ceeecccCCCcEEEEEEC
Confidence 588877 99999999988888887763 457899999999999886
No 19
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=33.67 E-value=67 Score=24.98 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=28.5
Q ss_pred CeEecCCCCCCHHHHHHHHHHHHHHHHHhCcc
Q psy3805 1 MELVFDPDLSDGEEAAALVKELILILQCLGTS 32 (139)
Q Consensus 1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs 32 (139)
|..||.||-..+++....+.+|++-|...||+
T Consensus 55 i~LvT~~d~~~~~~Q~~~l~~i~~sl~~~gI~ 86 (148)
T cd02685 55 IHLVTGEDEDNGKQQIEALEEIKQSLASHGVE 86 (148)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHhCCcE
Confidence 35789999999999999999999999888875
No 20
>PRK02107 glutamate--cysteine ligase; Provisional
Probab=33.08 E-value=38 Score=31.24 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=24.0
Q ss_pred CeEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy3805 1 MELVFDPDLSDGEEAAALVKELILILQCL 29 (139)
Q Consensus 1 iEIVTePd~~s~eEA~~~~~~L~~iL~~l 29 (139)
+|+|| |-..|+++|..|+..|..++..-
T Consensus 65 lE~IT-P~~~s~~~~l~~L~~lh~~v~~~ 92 (523)
T PRK02107 65 LEFIT-PVDGDIDHLLTFLRDLHRFTARK 92 (523)
T ss_pred HHhcC-CCCCCHHHHHHHHHHHHHHHHHh
Confidence 58899 77888999999999999988643
No 21
>smart00309 PAH Pancreatic hormones / neuropeptide F / peptide YY family. Pancreatic hormone is a regulator of pancreatic and gastrointestinal functions.
Probab=31.39 E-value=96 Score=18.71 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhC
Q psy3805 8 DLSDGEEAAALVKELILILQCLG 30 (139)
Q Consensus 8 d~~s~eEA~~~~~~L~~iL~~lg 30 (139)
|..|+||.+.|+..|+.-+..+|
T Consensus 10 ~~a~~e~l~~Y~~~L~~Yinlit 32 (36)
T smart00309 10 DDASPEDLRQYLAALREYINLIT 32 (36)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhc
Confidence 78899999999999998776554
No 22
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=31.19 E-value=67 Score=24.14 Aligned_cols=25 Identities=8% Similarity=-0.043 Sum_probs=21.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhC
Q psy3805 6 DPDLSDGEEAAALVKELILILQCLG 30 (139)
Q Consensus 6 ePd~~s~eEA~~~~~~L~~iL~~lg 30 (139)
=+|++|++++..|++.+.+.++-+.
T Consensus 61 ~~DI~t~~d~~~~~~~I~~~i~~l~ 85 (124)
T TIGR03642 61 FDDILSDEDILTFMSIAAKEVKKER 85 (124)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHh
Confidence 3699999999999999999887664
No 23
>TIGR01434 glu_cys_ligase glutamate--cysteine ligase. serve to protect against oxidative damage and participate in a biosynthetic or detoxification reactions.
Probab=30.88 E-value=44 Score=30.78 Aligned_cols=50 Identities=10% Similarity=0.171 Sum_probs=34.6
Q ss_pred CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceee----ccceecccC
Q psy3805 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRV----DANVSVQRR 52 (139)
Q Consensus 1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~----DvNVSv~~~ 52 (139)
+|+|| |-..|+++|..|+..|..++... +.+-.+=-.||-| |-.|-|...
T Consensus 61 lE~IT-P~~~s~~~~l~~L~~lh~~~~~~-l~~E~LWP~SMP~~l~~d~~IpIA~y 114 (512)
T TIGR01434 61 LEFIT-PTDGDIAHMLTFLRDLHRFTASK-LGDERMWPLSMPCYIADGQDIEIAQY 114 (512)
T ss_pred HHhcC-CCCCCHHHHHHHHHHHHHHHHhc-CCCCccCCCCCCCCCCCccccceeec
Confidence 58899 66788999999999999999764 4433222356665 334555543
No 24
>TIGR02050 gshA_cyan_rel uncharacterized enzyme. This family represents a division of a larger family, the other branch of which is predicted to act as glutamate--cysteine ligase (the first of two enzymes in glutathione biosynthesis) in the cyanobacteria. Species containing this protein, however, are generally not believe to make glutathione, and the function is unknown.
Probab=30.39 E-value=66 Score=26.80 Aligned_cols=28 Identities=25% Similarity=0.100 Sum_probs=21.0
Q ss_pred CeEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy3805 1 MELVFDPDLSDGEEAAALVKELILILQCL 29 (139)
Q Consensus 1 iEIVTePd~~s~eEA~~~~~~L~~iL~~l 29 (139)
|||.|.|+ .+..++.+-+..+++.+...
T Consensus 47 iEi~t~p~-~~~~~l~~~l~~~~~~l~~~ 74 (287)
T TIGR02050 47 VELATPVC-TTLAEAAAQIRAVRARLVQA 74 (287)
T ss_pred EEecCCCc-CCHHHHHHHHHHHHHHHHHH
Confidence 69999997 77888887777766666543
No 25
>PF04107 GCS2: Glutamate-cysteine ligase family 2(GCS2); InterPro: IPR006336 Also known as gamma-glutamylcysteine synthetase and gamma-ECS (6.3.2.2 from EC). This enzyme catalyses the first and rate limiting step in de novo glutathione biosynthesis. Members of this family are found in archaea, bacteria and plants. May and Leaver [] discuss the possible evolutionary origins of glutamate-cysteine ligase enzymes in different organisms and suggest that it evolved independently in different eukaryotes, from an ancestral bacterial enzyme. They also state that Arabidopsis thaliana (Mouse-ear cress) gamma-glutamylcysteine synthetase is structurally unrelated to mammalian, yeast and Escherichia coli homologues. In plants, there are separate cytosolic and chloroplast forms of the enzyme.; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process; PDB: 1R8G_A 2GWC_E 2GWD_A 1TT4_B.
Probab=29.93 E-value=64 Score=26.54 Aligned_cols=28 Identities=18% Similarity=0.072 Sum_probs=18.7
Q ss_pred CeEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy3805 1 MELVFDPDLSDGEEAAALVKELILILQCL 29 (139)
Q Consensus 1 iEIVTePd~~s~eEA~~~~~~L~~iL~~l 29 (139)
|||.|.|+ .|..|+.+-+...+..|...
T Consensus 46 vEi~t~p~-~~~~el~~~l~~~~~~l~~~ 73 (288)
T PF04107_consen 46 VEISTPPC-RSLAELREELRALRRALADA 73 (288)
T ss_dssp EEEE--SB-SSHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 69999987 56888877777666666544
No 26
>COG1490 Dtd D-Tyr-tRNAtyr deacylase [Translation, ribosomal structure and biogenesis]
Probab=28.41 E-value=1.1e+02 Score=23.80 Aligned_cols=44 Identities=25% Similarity=0.438 Sum_probs=36.9
Q ss_pred CCCCC---CHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccC
Q psy3805 6 DPDLS---DGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRR 52 (139)
Q Consensus 6 ePd~~---s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~ 52 (139)
-|+|+ +|+.|.+.-.++-..|+-.|+- -+.|.+..|-+||+-++
T Consensus 90 RPsFs~aa~p~~A~~lYe~f~~~lr~~~~~---V~tG~FgA~M~V~LvNd 136 (145)
T COG1490 90 RPSFSKAAKPDQAEELYEYFVELLRELGIK---VETGRFGADMQVSLVND 136 (145)
T ss_pred CCCccccCChHHHHHHHHHHHHHHHhcCCc---ceeeeeeceeEEEEecC
Confidence 46554 6899999999999999988854 46899999999999886
No 27
>PRK10628 LigB family dioxygenase; Provisional
Probab=27.35 E-value=47 Score=27.62 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=24.0
Q ss_pred ccceeEcCCCeeeccccCCCCCCCCCCCccccccch
Q psy3805 96 ETRAYDAATKRTVSMRDKENIQVKPRSHFKTLSLSL 131 (139)
Q Consensus 96 ETR~~d~~~~~T~~~R~KE~~~DYr~~~~p~~~l~~ 131 (139)
++|+||- |.-++|+- =|.+.+||++++|.
T Consensus 90 ~~rGlDH--G~WvpL~~-----m~P~adIPVvqlSl 118 (246)
T PRK10628 90 EAWGFDH--GSWGVLIK-----MYPDADIPMVQLSI 118 (246)
T ss_pred cccCccc--chhhhhhh-----hCCCCCCCeEEeec
Confidence 3599999 88888875 36788999999985
No 28
>PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function.
Probab=26.66 E-value=1.2e+02 Score=18.53 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhCccc
Q psy3805 10 SDGEEAAALVKELILILQCLGTST 33 (139)
Q Consensus 10 ~s~eEA~~~~~~L~~iL~~lgvs~ 33 (139)
.++.||..++.+-+.++.--|++.
T Consensus 19 ~~~~EA~~A~~kAq~Lm~ky~i~~ 42 (43)
T PF10979_consen 19 SNEHEAEAALAKAQRLMAKYGIDE 42 (43)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcc
Confidence 457799999999999999888874
No 29
>TIGR02887 spore_ger_x_C germination protein, Ger(x)C family. Members of this protein family are restricted to endospore-forming members of the Firmicutes lineage of bacteria, including the genera Bacillus, Clostridium, Thermoanaerobacter, Carboxydothermus, etc. Members are nearly all predicted lipoproteins and belong to probable transport operons, some of which have been characterized as crucial to germination in response to alanine. Members typically have been gene symbols gerKC, gerAC, gerYC, etc.
Probab=26.48 E-value=57 Score=27.52 Aligned_cols=50 Identities=8% Similarity=0.270 Sum_probs=31.5
Q ss_pred cCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHHHHHHH
Q psy3805 36 MQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEIVRQVA 85 (139)
Q Consensus 36 me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~~RQ~~ 85 (139)
++.|..+++++|++...-.+...++-.+.|-..++.++++++.+++.+.+
T Consensus 263 ~~~~~~~~~i~i~~~~~i~e~~~~~~~~~~~~~~~~le~~~e~~i~~~~~ 312 (371)
T TIGR02887 263 VKGGKPHFKIHIKLEGRITESQDPKENLEKPKNLKKIEKEAEKEIEKEIE 312 (371)
T ss_pred EECCeEEEEEEEEEEEEEeeeccCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777776553222122233345556788999999998888766
No 30
>PF15577 Spc7_C2: Spc7_C2
Probab=26.01 E-value=1.2e+02 Score=20.22 Aligned_cols=47 Identities=17% Similarity=0.233 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEec
Q psy3805 13 EEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVK 64 (139)
Q Consensus 13 eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIK 64 (139)
+.|.....+++++-...=.+-..+.+-+|-+.+++=+.+. .+||||+
T Consensus 12 ~~a~~v~~~ir~l~~~fPt~v~~tsD~si~v~~slll~~l-----~tKvev~ 58 (67)
T PF15577_consen 12 DKAKSVAEQIRRLNLTFPTSVTKTSDSSIAVTVSLLLPPL-----RTKVEVV 58 (67)
T ss_pred HHHHHHHHHHHhhheeCcEEEEeCCCceEEEEEEEEeccc-----eeEEEEE
Confidence 4577778888887777666666777778888877766553 6788875
No 31
>PF02686 Glu-tRNAGln: Glu-tRNAGln amidotransferase C subunit; InterPro: IPR003837 Glu-tRNAGln amidotransferase is a heterotrimeric enzyme that is required for correct decoding of glutamine codons during translation. The Glu-tRNA Gln amidotransferase enzyme is an important translational fidelity mechanism replacing incorrectly charged Glu-tRNAGln with the correct Gln-tRANGln via transmidation of the misacylated Glu-tRNAGln []. This activity supplements the lack of glutaminyl-tRNA synthetase activity in Gram-positive eubacteria, cyanobacteria, archaea, and organelles [].; GO: 0006450 regulation of translational fidelity; PDB: 2DQN_C 3IP4_C 2G5I_C 2F2A_C 2G5H_C 2DF4_C 3AL0_C 3KFU_G 3H0R_I 3H0L_U ....
Probab=25.96 E-value=97 Score=19.89 Aligned_cols=21 Identities=33% Similarity=0.325 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHHHHHHhCc
Q psy3805 11 DGEEAAALVKELILILQCLGT 31 (139)
Q Consensus 11 s~eEA~~~~~~L~~iL~~lgv 31 (139)
+.+|+..|.++|..||.++..
T Consensus 2 ~eeE~~~~~~~l~~il~~~~~ 22 (72)
T PF02686_consen 2 TEEELEKLTKQLNDILDYVEK 22 (72)
T ss_dssp -HHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999873
No 32
>PF12441 DUF3680: Protein of unknown function (DUF3680) ; InterPro: IPR022148 This domain family is found in bacteria and archaea, and is approximately 40 amino acids in length.
Probab=25.25 E-value=71 Score=19.71 Aligned_cols=26 Identities=15% Similarity=0.010 Sum_probs=19.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCcc
Q psy3805 6 DPDLSDGEEAAALVKELILILQCLGTS 32 (139)
Q Consensus 6 ePd~~s~eEA~~~~~~L~~iL~~lgvs 32 (139)
=|.|.|.+|+++|... .....|+..+
T Consensus 5 iP~f~se~Ee~eFW~~-hD~tdy~d~~ 30 (42)
T PF12441_consen 5 IPEFKSEEEEREFWDT-HDSTDYDDWS 30 (42)
T ss_pred CCCCCCHHHHHHHHHh-ccchhhcccc
Confidence 3899999999999876 4455555544
No 33
>PRK13515 carboxylate-amine ligase; Provisional
Probab=23.30 E-value=92 Score=26.78 Aligned_cols=28 Identities=18% Similarity=-0.062 Sum_probs=22.4
Q ss_pred CeEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy3805 1 MELVFDPDLSDGEEAAALVKELILILQCL 29 (139)
Q Consensus 1 iEIVTePd~~s~eEA~~~~~~L~~iL~~l 29 (139)
|||.|.|+- +..++..++..++..+...
T Consensus 52 iEi~T~p~~-~~~el~~~L~~~~~~l~~~ 79 (371)
T PRK13515 52 VEVGTPVCA-TIAEAREELGRLRQRVAQL 79 (371)
T ss_pred EEECCcccC-CHHHHHHHHHHHHHHHHHH
Confidence 699998776 7899998888877777643
No 34
>PF05794 Tcp11: T-complex protein 11; InterPro: IPR008862 This family consists of several eukaryotic T-complex protein 11 (Tcp11) related sequences. Tcp11 is only expressed in fertile adult mammalian testes and is thought to be important in sperm function and fertility. The family also contains the Saccharomyces cerevisiae Sok1 protein which is known to suppress cyclic AMP-dependent protein kinase mutants [].
Probab=23.14 E-value=53 Score=28.43 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecccceeEcC
Q psy3805 71 GVANAVNFEIVRQVALLEQGGVVVNETRAYDAA 103 (139)
Q Consensus 71 ~I~~AI~yE~~RQ~~~l~~G~~v~~ETR~~d~~ 103 (139)
-++.|++||..+....++.|..-...|+.|=..
T Consensus 169 L~~~sv~yEr~~F~~~l~~~~~~l~~T~~Wl~~ 201 (441)
T PF05794_consen 169 LIEHSVEYERKKFQERLEKGPNSLPRTKAWLKR 201 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence 578999999999999999988788889998653
No 35
>KOG0852|consensus
Probab=22.16 E-value=1e+02 Score=25.13 Aligned_cols=35 Identities=14% Similarity=0.072 Sum_probs=31.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCc
Q psy3805 6 DPDLSDGEEAAALVKELILILQCLGTSTCKMQEGA 40 (139)
Q Consensus 6 ePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~ 40 (139)
-|--+|.+|+...++.+|-.-++..||.++---|+
T Consensus 144 lpvgRSVdE~lRLvqAfQ~td~~geVcPagW~pgs 178 (196)
T KOG0852|consen 144 LPVGRSVDETLRLVQAFQFTDEHGEVCPAGWKPGS 178 (196)
T ss_pred cCCCccHHHHHHHHHHHhhhhccCccccCCCCCCC
Confidence 37789999999999999999999999999887665
No 36
>PF13299 CPSF100_C: Cleavage and polyadenylation factor 2 C-terminal
Probab=22.16 E-value=2.4e+02 Score=21.63 Aligned_cols=45 Identities=29% Similarity=0.457 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCccccccC-CCceeeccceecccCCCCCCcCeeEecCCCC
Q psy3805 19 VKELILILQCLGTSTCKMQ-EGALRVDANVSVQRRTDTKLGTRSEVKNIGS 68 (139)
Q Consensus 19 ~~~L~~iL~~lgvs~g~me-~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS 68 (139)
+..|++.|...|+. +.+. +|.|-||--|+|+.... | +++|-+.-|
T Consensus 102 L~~lk~~L~~~g~~-aEF~g~G~Lv~~~~V~VrK~~~---G-~i~ieG~~~ 147 (161)
T PF13299_consen 102 LSDLKQALQSAGIQ-AEFRGEGVLVCNGGVAVRKSED---G-RIVIEGCLS 147 (161)
T ss_pred HHHHHHHHHHCCCc-eEEeeCCeEEECCEEEEEEcCC---C-CEEEEecCc
Confidence 57899999998855 4555 89999999999998632 3 788877765
No 37
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=21.97 E-value=52 Score=27.80 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=27.6
Q ss_pred HHHHcCCeeecccceeEcCCCeeeccccCCCCCCCCCCCccccccchhhh
Q psy3805 85 ALLEQGGVVVNETRAYDAATKRTVSMRDKENIQVKPRSHFKTLSLSLTLL 134 (139)
Q Consensus 85 ~~l~~G~~v~~ETR~~d~~~~~T~~~R~KE~~~DYr~~~~p~~~l~~~~~ 134 (139)
++|+.|-.+-..||.||++.+.-+ .+. | -.|=.|.|..|+-
T Consensus 8 ~lLeAGvHfGhqtr~wnpkm~~fI-f~~-------R-ngihIIDL~kT~~ 48 (252)
T COG0052 8 QLLEAGVHFGHQTRRWNPKMKPFI-FGE-------R-NGIHIIDLQKTLE 48 (252)
T ss_pred HHHHcCccccccccccCCcccccc-eee-------c-CCcEEEEHHHHHH
Confidence 489999999999999999764322 222 2 3455666666553
No 38
>PF06319 DUF1052: Protein of unknown function (DUF1052); InterPro: IPR009394 This entry is represented by Ralstonia phage RSL1, Orf212. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of unknown function.; PDB: 3DNX_A.
Probab=21.75 E-value=1e+02 Score=24.29 Aligned_cols=54 Identities=24% Similarity=0.366 Sum_probs=25.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCcc---ccccCCCceeeccceecccCCCCCCcCeeEecC
Q psy3805 7 PDLSDGEEAAALVKELILILQCLGTS---TCKMQEGALRVDANVSVQRRTDTKLGTRSEVKN 65 (139)
Q Consensus 7 Pd~~s~eEA~~~~~~L~~iL~~lgvs---~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKN 65 (139)
||-+.++-|....+-..++|...|.. .-.+..| -|+|+ +.+.++| .. .-||||-
T Consensus 13 ~d~rq~~~a~~v~RGv~R~l~~~g~~~l~E~~L~~G-RRaDv-~al~~kG-eI--~ivEIKS 69 (157)
T PF06319_consen 13 PDGRQSETALAVARGVCRLLRSLGFACLPEVPLPNG-RRADV-MALGPKG-EI--WIVEIKS 69 (157)
T ss_dssp -----------HHHHHHHHHHHTT-EEEEEE-SSTT---EEE-EEE-TT---E--EEEEE-S
T ss_pred ccccchhHHHHHHHHHHHHHHHCCCeEEEEecCCCC-CeEEE-EEECCCC-eE--EEEEEEc
Confidence 46777889999999999999998843 3344556 49997 5666652 22 3589994
No 39
>cd00677 S15_NS1_EPRS_RNA-bind S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic aminoacyl tRNA synthetases (aaRSs), where it occurs as a single or a repeated unit. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions in the formation of tRNA-synthetases into multienzyme complexes. While this domain lacks significant sequence similarity between the subgroups in which it is found, they share similar electrostatic surface potentials and thus are likely to bind to RNA via the same mechanism.
Probab=21.65 E-value=1.4e+02 Score=17.92 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhC
Q psy3805 8 DLSDGEEAAALVKELILILQCLG 30 (139)
Q Consensus 8 d~~s~eEA~~~~~~L~~iL~~lg 30 (139)
|..+-......+.+++.++.|++
T Consensus 24 D~~~kr~L~~~v~kr~rLl~ylk 46 (46)
T cd00677 24 DKHSKRGLDLLVSKRLRLLKYLK 46 (46)
T ss_pred CcchHHHHHHHHHHHHHHHHHhC
Confidence 77888888999999999999874
No 40
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=21.26 E-value=1.2e+02 Score=23.40 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCccc
Q psy3805 7 PDLSDGEEAAALVKELILILQCLGTST 33 (139)
Q Consensus 7 Pd~~s~eEA~~~~~~L~~iL~~lgvs~ 33 (139)
+++.+|+.|.+.+++|...|+.-|..-
T Consensus 85 s~La~P~~A~~iL~~le~~L~~~g~eV 111 (138)
T PF08915_consen 85 SSLASPDVAVEILKKLEERLKSRGFEV 111 (138)
T ss_dssp SSB--HHHHHHHHHHHHHHHHHTT-EE
T ss_pred CCcCChHHHHHHHHHHHHHHHhCCCeE
Confidence 588999999999999999998777654
No 41
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=20.65 E-value=1.1e+02 Score=25.46 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=19.4
Q ss_pred EecCCCCCCHHHHHHHHHHHHHH
Q psy3805 3 LVFDPDLSDGEEAAALVKELILI 25 (139)
Q Consensus 3 IVTePd~~s~eEA~~~~~~L~~i 25 (139)
|||.|+..+...|..+++.+...
T Consensus 140 iVt~pe~~si~~A~~~i~~~~~~ 162 (262)
T COG0455 140 IVTTPEPTSITDAYKTIKILSKL 162 (262)
T ss_pred EEeCCCcchHHHHHHHHHHHHHc
Confidence 79999999999999988765543
No 42
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.57 E-value=2.6e+02 Score=23.83 Aligned_cols=81 Identities=21% Similarity=0.163 Sum_probs=45.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCC-CCc-CeeEecCCCChHHHHHHHHHHHHHH
Q psy3805 6 DPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDT-KLG-TRSEVKNIGSIRGVANAVNFEIVRQ 83 (139)
Q Consensus 6 ePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~-~~g-~RvEIKNlNS~~~I~~AI~yE~~RQ 83 (139)
-||+.+|+-..-+...++.++...||.- +.+|.|=.+-+.... ..| +--++.|+.++-..+ | -||..|.
T Consensus 153 ~~Dftnp~a~~Ww~~~~~~~~~~~Gidg-------~w~D~~E~~~~~~~~~~~g~~~~~~hN~y~~~~~~-~-~~e~~~~ 223 (340)
T cd06597 153 MLDFTNPEAAQWWMEKRRYLVDELGIDG-------FKTDGGEHVWGRDLHFRDGRRGDEMRNTYPNHYVR-A-YNDFLRR 223 (340)
T ss_pred eecCCCHHHHHHHHHHHHHHHHhcCCcE-------EEecCCCccCCCCceecCCCcHHHhhcccHHHHHH-H-HHHHHHh
Confidence 4899999988878888888888889842 223322111010000 001 123789998885443 4 4565443
Q ss_pred HHHHHcCCeeeccccee
Q psy3805 84 VALLEQGGVVVNETRAY 100 (139)
Q Consensus 84 ~~~l~~G~~v~~ETR~~ 100 (139)
. |....-.||+-
T Consensus 224 ~-----~~r~filtRs~ 235 (340)
T cd06597 224 A-----KKDGVTFSRAG 235 (340)
T ss_pred c-----cCCcEEEEecc
Confidence 2 44555556663
No 43
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=20.53 E-value=51 Score=25.39 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=28.0
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHhCccc-cccCCCceeeccceeccc
Q psy3805 3 LVFDPDLSDGEEAAALVKELILILQCLGTST-CKMQEGALRVDANVSVQR 51 (139)
Q Consensus 3 IVTePd~~s~eEA~~~~~~L~~iL~~lgvs~-g~me~G~lR~DvNVSv~~ 51 (139)
|++.|-+--.-|-..-++..|.++ |..+ ++-+.|.||-|-++|+..
T Consensus 66 itSgPvv~~VleGe~ai~~~R~l~---GaTnp~~A~pGTIRgdfa~~~~~ 112 (135)
T COG0105 66 ITSGPVVAMVLEGENAISVVRKLM---GATNPANAAPGTIRGDFALSVGE 112 (135)
T ss_pred eecCcEEEEEEecHhHHHHHHHHH---CCCCcccCCCCeEeeehhcccCc
Confidence 345554433333334445555555 5544 555789999999999865
No 44
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=20.32 E-value=61 Score=22.67 Aligned_cols=72 Identities=15% Similarity=0.129 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCC--ChHHHHHHHH-HHHHHH
Q psy3805 12 GEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIG--SIRGVANAVN-FEIVRQ 83 (139)
Q Consensus 12 ~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlN--S~~~I~~AI~-yE~~RQ 83 (139)
.+-...|+.++..+..-+..+...+.+-.+-.-+=-|+.+........--.-++++ ||..+...+. +|...+
T Consensus 40 ~~sv~~y~~~~~~i~~~L~~~g~~i~d~~~v~~iL~~Lp~~y~~~~~~i~~~~~~~~~t~~el~~~L~~~E~~~~ 114 (119)
T PF14223_consen 40 GESVDEYISRLKEIVDELRAIGKPISDEDLVSKILRSLPPSYDTFVTAIRNSKDLPKMTLEELISRLLAEEMRLK 114 (119)
T ss_pred cccHHHHHHHHHHhhhhhhhcCCcccchhHHHHHHhcCCchhHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHH
Confidence 44567788888888888877777766555544444444443221112223567888 8988888876 555544
Done!