Query psy3805
Match_columns 139
No_of_seqs 105 out of 881
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 17:54:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3805.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3805hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0l_B Aspartyl/glutamyl-tRNA( 100.0 2E-56 6.8E-61 392.4 14.0 136 1-136 152-290 (478)
2 3ip4_B Aspartyl/glutamyl-tRNA( 100.0 3.9E-56 1.3E-60 391.0 12.8 136 1-136 149-287 (483)
3 3kfu_F Aspartyl/glutamyl-tRNA( 100.0 5.8E-56 2E-60 387.9 12.2 135 1-136 145-282 (466)
4 3al0_B Aspartyl/glutamyl-tRNA( 100.0 4.6E-56 1.6E-60 390.4 9.1 137 1-137 156-295 (482)
5 1zq1_C Glutamyl-tRNA(Gln) amid 100.0 4.9E-41 1.7E-45 302.6 12.0 79 1-88 188-267 (633)
6 2d6f_C Glutamyl-tRNA(Gln) amid 100.0 4.3E-41 1.5E-45 302.3 11.1 79 1-88 183-261 (619)
7 3nzt_A Glutamate--cysteine lig 51.8 11 0.00036 33.5 3.4 28 1-29 77-104 (525)
8 3n54_B Spore germination prote 45.9 12 0.0004 30.1 2.6 50 36-85 240-289 (350)
9 1va6_A Glutamate--cysteine lig 43.9 17 0.00058 32.0 3.5 29 1-30 66-94 (518)
10 3ln6_A Glutathione biosynthesi 36.9 25 0.00087 32.0 3.6 28 1-29 64-91 (750)
11 4hti_A Receptor-type tyrosine- 36.0 35 0.0012 23.9 3.5 63 3-77 14-76 (99)
12 1i2h_A PSD-ZIP45(homer-1C/VESL 31.6 20 0.00067 27.3 1.7 32 8-39 94-125 (168)
13 3fx7_A Putative uncharacterize 30.3 42 0.0015 23.3 3.1 26 9-34 5-30 (94)
14 4g7x_B TOLA protein; membrane, 29.7 62 0.0021 23.3 4.1 38 13-52 46-83 (138)
15 1xkm_B Distinctin chain B; por 29.7 57 0.0019 17.3 2.8 19 13-31 7-25 (26)
16 3ln7_A Glutathione biosynthesi 28.7 26 0.00087 32.1 2.2 28 1-29 63-90 (757)
17 2jvf_A De novo protein M7; tet 26.5 97 0.0033 20.9 4.3 24 10-33 57-80 (96)
18 1k8v_A Neuropeptide F; moniezi 25.4 32 0.0011 20.4 1.5 23 8-30 13-35 (40)
19 3v26_X ORF3, ORF95, probable s 24.6 1.6E+02 0.0055 19.6 7.1 76 4-85 5-86 (101)
20 2adl_A CCDA; ribbon-helix-heli 23.8 20 0.00067 23.4 0.4 69 42-122 2-72 (72)
21 2fiq_A Putative tagatose 6-pho 21.3 66 0.0023 27.6 3.3 25 9-33 187-211 (420)
22 2kmf_A Photosystem II 11 kDa p 20.8 11 0.00039 27.0 -1.4 61 12-78 17-79 (115)
23 1qc6_A EVH1 domain from ENA/VA 20.7 70 0.0024 22.6 2.8 24 8-31 91-114 (130)
No 1
>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*
Probab=100.00 E-value=2e-56 Score=392.44 Aligned_cols=136 Identities=37% Similarity=0.568 Sum_probs=132.7
Q ss_pred CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI 80 (139)
Q Consensus 1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~ 80 (139)
|||||+|||+||+||++|+++||.+|+|+|+|||+||+|+|||||||||++.|..++|+||||||||||++|++||+||+
T Consensus 152 iEIVTePd~~s~eeA~a~~~~L~~ilr~lgvsd~~meeGslR~DvNVSvr~~g~~~~GtRvEiKNlnS~~~v~~AI~yEi 231 (478)
T 3h0l_B 152 MEIVTEPDIRTPEEARLFLEKLRNIMRYAGVSKADMEKGQLRCDINVSIRPKGSKEFGTRVEIKNVNSFRFVQKALEYEI 231 (478)
T ss_dssp EEEEECTTBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEEEEETTCCSCCCCEEEECCCSHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHHHhCcCccccccCceEeeeeEEeccCCCCCCcceEEEeccccHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHHHHcCCeeecccceeEcCCCeeeccccCCCCCCCCCC---Cccccccchhhhhh
Q psy3805 81 VRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQVKPRS---HFKTLSLSLTLLNL 136 (139)
Q Consensus 81 ~RQ~~~l~~G~~v~~ETR~~d~~~~~T~~~R~KE~~~DYr~~---~~p~~~l~~~~~~~ 136 (139)
.||+++|+.|+.|.||||+||+.+|+|.+||+||++.||||| +||-+.++++.++-
T Consensus 232 ~RQ~~~le~Gg~V~qETR~~d~~~g~T~~mR~KE~a~DYRyfPePDLppv~i~~e~i~~ 290 (478)
T 3h0l_B 232 ERQINVVEEGGEVVQETRTFDPQTGKTYPMRTKEEAEDYRYFPDPDLVPLKVKKEWIEE 290 (478)
T ss_dssp HHHHHHHHTTCCCCCCEEEEETTTTEEECCSCCCCCCCCCCEECTTSCCEECCHHHHHH
T ss_pred HHHHHHHHcCCCeecccccccCCCCeEEeccccCccccCCCCCCCCCCCeecCHHHHHH
Confidence 999999999999999999999999999999999999999988 99999999988764
No 2
>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B
Probab=100.00 E-value=3.9e-56 Score=390.99 Aligned_cols=136 Identities=35% Similarity=0.463 Sum_probs=132.6
Q ss_pred CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI 80 (139)
Q Consensus 1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~ 80 (139)
|||||+|||+||+||++|+++|+++|+|+|+|||+||+|+|||||||||++.|+.++|+||||||||||++|++||+||+
T Consensus 149 iEIVTePd~~s~eeA~a~~~~L~~ilr~lgvsd~~meeGslR~DvNVSvr~~g~~~~GtRvEiKNlnS~~~v~~AI~yEi 228 (483)
T 3ip4_B 149 IEIVSEPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEE 228 (483)
T ss_dssp EEEEECSCBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEEEEETTSCCCCCEEEEECCCSHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcccCceEeeeeEeecCCCCCCCcceEEEecccCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHHHHcCCeeecccceeEcCCCeeeccccCCCCCCCCCC---Cccccccchhhhhh
Q psy3805 81 VRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQVKPRS---HFKTLSLSLTLLNL 136 (139)
Q Consensus 81 ~RQ~~~l~~G~~v~~ETR~~d~~~~~T~~~R~KE~~~DYr~~---~~p~~~l~~~~~~~ 136 (139)
.||+++|+.|+.|.||||+||+.+|+|.+||+||++.||||+ +||-+.++++.++-
T Consensus 229 ~RQ~~~le~Gg~v~qETR~~d~~~g~T~~mR~KE~a~DYRyfPePDLpPv~i~~e~ie~ 287 (483)
T 3ip4_B 229 KRQEEELLNGGEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKER 287 (483)
T ss_dssp HHHHHHHHHTCCCCEEEEEECTTTSCEEEEEEECSCCCCCCEECTTSCCEECCHHHHHH
T ss_pred HHHHHHHHcCCcEeccceeecCCCCEEEecccccccccCCCCCCCCCCceecCHHHHHH
Confidence 999999999999999999999999999999999999999988 99999999988764
No 3
>3kfu_F Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=5.8e-56 Score=387.94 Aligned_cols=135 Identities=34% Similarity=0.512 Sum_probs=125.5
Q ss_pred CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI 80 (139)
Q Consensus 1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~ 80 (139)
|||||+|||+||+||++|+++|+++|+|+|+|||+||+|+|||||||||++.|+ ++|+||||||||||++|++||+||+
T Consensus 145 iEIVTePDirspeEA~ayl~~Lr~ilrylgvsdg~meeGslR~DvNVSvr~~g~-~~GtRvEIKNlNSfr~V~kAI~yEi 223 (466)
T 3kfu_F 145 IELVTEPDLKTPEEARLFLQRIQALVQTLGISDASPEEGKLRADVNVSVRRVGE-PLGTKVEIKNLNSFKSVQRALEYEI 223 (466)
T ss_dssp EEEEECTTBCCHHHHHHHHHHHHHHHHHHTSBCCCGGGTCEEEEEEEEECCSSS-SCCCCEEEEEECCHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccCcEEEeeeEEecCCCC-CCCceEEEecccCHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999977 9999999999999999999999999
Q ss_pred HHHHHHHHcCCeeecccceeEcCCCeeeccccCCCCCCCCCC---Cccccccchhhhhh
Q psy3805 81 VRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQVKPRS---HFKTLSLSLTLLNL 136 (139)
Q Consensus 81 ~RQ~~~l~~G~~v~~ETR~~d~~~~~T~~~R~KE~~~DYr~~---~~p~~~l~~~~~~~ 136 (139)
.||+++|+.|+.|.||||+||+.+|+|.+||+||++.||||+ +||-+.++++.++-
T Consensus 224 ~RQ~~lLe~Gg~V~qETR~wd~~~g~T~~mR~KE~a~DYRYfPEPDLpPv~i~~e~ie~ 282 (466)
T 3kfu_F 224 RRQTEILRRGEKVKQATMGFEEGSGKTYPMRTKEEEADYRYFPEPDLPPVAIPRDWLEE 282 (466)
T ss_dssp HHHHHHHTSSCCCCCCEECEETTTTEECCC------CCCCCEECTTSCCEECCHHHHHH
T ss_pred HHHHHHHHcCCCeeCccCcccCCCCEEEeCcccCccccCCcCCCCCCCcEecCHHHHHH
Confidence 999999999999999999999999999999999999999988 99999999988764
No 4
>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=100.00 E-value=4.6e-56 Score=390.45 Aligned_cols=137 Identities=40% Similarity=0.502 Sum_probs=133.0
Q ss_pred CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI 80 (139)
Q Consensus 1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~ 80 (139)
|||||+|||+||+||++|+++|+++|+|+|+|||+||+|+|||||||||++.|+.++|+||||||||||++|++||+||+
T Consensus 156 iEIVTePd~~s~eeA~~~~~~L~~il~~lgvsd~~meeGslR~DvNVSvr~~g~~~~gtR~EiKNlnS~~~v~~Ai~yE~ 235 (482)
T 3al0_B 156 IEIVTEPDISSPREARVFMEKLRSIVRYLGVSTGDMEKGALRCDANISVVDTETGRQSNRVEVKNMNSFRFVERALEYEF 235 (482)
T ss_dssp EEEEECTTCCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEECCCCSSSCSSCCCCCCCCCCCSSHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHHHhCCCCCccccCceeccceeeecCCCCCCCCceEEEechhhHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHHHHcCCeeecccceeEcCCCeeeccccCCCCCCCCCC---Cccccccchhhhhhh
Q psy3805 81 VRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQVKPRS---HFKTLSLSLTLLNLL 137 (139)
Q Consensus 81 ~RQ~~~l~~G~~v~~ETR~~d~~~~~T~~~R~KE~~~DYr~~---~~p~~~l~~~~~~~~ 137 (139)
.||+++|+.|+.|.||||+||+.+|+|++||+||++.||||+ +||-+.++++.++-+
T Consensus 236 ~RQ~~~l~~G~~v~qETR~~d~~~g~T~~mR~Ke~a~DYRyfPepDLpp~~i~~~~ie~i 295 (482)
T 3al0_B 236 ERIVKAMERGEDVERETRGWDMATKITVSMRGKEEESDYRYFPEPDIPPVVLSDEYLEEV 295 (482)
T ss_dssp HTTSSSSSSSCCCCCCCCEEETTTTEEECCSSCCCSCCCCCEECTTSCCEECCHHHHTTS
T ss_pred HHHHHHHHcCCCeEeEEccccCCCCeEeecccCCCccccCCCCCCCCCcEEcCHHHHHHH
Confidence 999999999999999999999999999999999999999987 999999999887643
No 5
>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Probab=100.00 E-value=4.9e-41 Score=302.56 Aligned_cols=79 Identities=28% Similarity=0.402 Sum_probs=76.0
Q ss_pred CeEecCCCCCCHHHHHHHHHHHHHHHHHhC-ccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHH
Q psy3805 1 MELVFDPDLSDGEEAAALVKELILILQCLG-TSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFE 79 (139)
Q Consensus 1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lg-vs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE 79 (139)
|||||+|||+||+||++|+++|+++|+|+| +|+| +|+|||||||||+. |+||||||||||++|++||+||
T Consensus 188 iEIvTePdi~speeA~~~~~~l~~ilr~~g~v~~g---~GslR~DvNVSi~~------G~RvEIKnvnS~~~i~~ai~~E 258 (633)
T 1zq1_C 188 IEISTTPDIHHPEQAKVVAKFIGDALRATKKVKRG---LGTIRQDLNVSIKG------GARIEIKGVQELDMIPIIIERE 258 (633)
T ss_dssp EEEECCTTBCSHHHHHHHHHHHHHHHHHTSCBCCS---STTEEEEEEECCTT------SCCEEEECCCSGGGHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHHHhCCcccC---CCccccccccccCC------CceeEeeCCccHHHHHHHHHHH
Confidence 699999999999999999999999999999 7776 89999999999984 8999999999999999999999
Q ss_pred HHHHHHHHH
Q psy3805 80 IVRQVALLE 88 (139)
Q Consensus 80 ~~RQ~~~l~ 88 (139)
+.||+++|+
T Consensus 259 ~~RQ~~ll~ 267 (633)
T 1zq1_C 259 VERQLNLLK 267 (633)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999996
No 6
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Probab=100.00 E-value=4.3e-41 Score=302.35 Aligned_cols=79 Identities=29% Similarity=0.467 Sum_probs=76.8
Q ss_pred CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI 80 (139)
Q Consensus 1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~ 80 (139)
|||||+|||+||+||++|+++|+++|+|+|+|+| +|+|||||||||+. |+||||||||||++|++||+||+
T Consensus 183 iEIvTePd~~speeA~~~~~~l~~ilr~~~v~~g---~GslR~DvNVSi~~------G~RvEIKnvns~~~i~~ai~~E~ 253 (619)
T 2d6f_C 183 VEITTDPSMSDPQQLREVAYQIGQILRSTRVKRG---LGTIRQDLNISIRD------GARVEVKGVQDLDLIPEIVEREV 253 (619)
T ss_dssp EEEECCSCCCCHHHHHHHHHHHHHHHTTSSCCCS---STTCEEEEEEECTT------SCCEEEECCCCGGGHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHHHhCCccC---CCccccccccccCC------CceeEeeCCccHHHHHHHHHHHH
Confidence 6999999999999999999999999999999988 89999999999984 89999999999999999999999
Q ss_pred HHHHHHHH
Q psy3805 81 VRQVALLE 88 (139)
Q Consensus 81 ~RQ~~~l~ 88 (139)
.||+++|+
T Consensus 254 ~RQ~~ll~ 261 (619)
T 2d6f_C 254 KRQLSLVE 261 (619)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999999
No 7
>3nzt_A Glutamate--cysteine ligase; structural genomics, center for structural genomics of infec diseases, csgid, alpha and beta proteins; HET: AMP; 2.00A {Francisella tularensis subsp}
Probab=51.84 E-value=11 Score=33.51 Aligned_cols=28 Identities=14% Similarity=0.027 Sum_probs=24.4
Q ss_pred CeEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy3805 1 MELVFDPDLSDGEEAAALVKELILILQCL 29 (139)
Q Consensus 1 iEIVTePd~~s~eEA~~~~~~L~~iL~~l 29 (139)
||++| |-..|.++|..|+..|+..+...
T Consensus 77 lE~iT-p~~~s~~ea~~~L~~l~~~v~~~ 104 (525)
T 3nzt_A 77 LELIT-KPHDSIDKAIGELYQLSAFTLDN 104 (525)
T ss_dssp EEEEC-CCBSSHHHHHHHHHHHHHHHHHH
T ss_pred hhhcC-CCCCCHHHHHHHHHHHHHHHHHh
Confidence 69999 55678999999999999998765
No 8
>3n54_B Spore germination protein B3; A novel fold, lipid binding protein; 2.30A {Bacillus subtilis subsp}
Probab=45.94 E-value=12 Score=30.11 Aligned_cols=50 Identities=10% Similarity=0.117 Sum_probs=31.0
Q ss_pred cCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHHHHHHH
Q psy3805 36 MQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEIVRQVA 85 (139)
Q Consensus 36 me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~~RQ~~ 85 (139)
++.|.+.++++|.+...-.+..++...+-+-..++.++++++.+++++.+
T Consensus 240 ~~~~~~~~~i~i~~~g~i~E~~~~~~~~~~~~~~~~le~~~~~~i~~~~~ 289 (350)
T 3n54_B 240 IENGKPVFHISVKTKGILTEDQNPNENSFSKSYLHRLENIFEKKLERDVK 289 (350)
T ss_dssp ECSSSEEEEEEEEEEEEEECCCC-----CCSHHHHHHHHHHHHHHHHHHH
T ss_pred EECCeEEEEEEEEEEEEEEEcccCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888887653222112222233344578999999999999876
No 9
>1va6_A Glutamate--cysteine ligase; glutathione homeostasis, beta barrel, peptide synthesis, transition state analogue; HET: P2S ADP P6G; 2.10A {Escherichia coli} SCOP: d.128.1.4 PDB: 1v4g_A* 2d32_A* 2d33_A*
Probab=43.86 E-value=17 Score=32.03 Aligned_cols=29 Identities=17% Similarity=0.128 Sum_probs=24.3
Q ss_pred CeEecCCCCCCHHHHHHHHHHHHHHHHHhC
Q psy3805 1 MELVFDPDLSDGEEAAALVKELILILQCLG 30 (139)
Q Consensus 1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lg 30 (139)
||++| |-..|.++|..++..|+..+...=
T Consensus 66 lE~iT-pv~~s~~eal~~L~~l~~~v~~~l 94 (518)
T 1va6_A 66 LEFIT-PVDGDIEHMLTFMRDLHRYTARNM 94 (518)
T ss_dssp EEEEC-CCBSCHHHHHHHHHHHHHHHHTSS
T ss_pred eeecC-CCCCCHHHHHHHHHHHHHHHHHHc
Confidence 69999 555779999999999999987543
No 10
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=36.95 E-value=25 Score=31.96 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=24.1
Q ss_pred CeEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy3805 1 MELVFDPDLSDGEEAAALVKELILILQCL 29 (139)
Q Consensus 1 iEIVTePd~~s~eEA~~~~~~L~~iL~~l 29 (139)
||++|.| ..|.+||..++..|+..+...
T Consensus 64 lE~~Tpv-~~~~~~~~~~L~~l~~~~~~~ 91 (750)
T 3ln6_A 64 LELITPI-AKDSQEAIRFLKAISDVAGRS 91 (750)
T ss_dssp EEEECCC-BSSHHHHHHHHHHHHHHHHHH
T ss_pred eeeeCcC-CCCHHHHHHHHHHHHHHHHHH
Confidence 6999955 577999999999999998766
No 11
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=36.03 E-value=35 Score=23.86 Aligned_cols=63 Identities=22% Similarity=0.276 Sum_probs=43.0
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHH
Q psy3805 3 LVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVN 77 (139)
Q Consensus 3 IVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~ 77 (139)
|+|+-++.++++-..++..|-++| +++.+.+ .||||-++ .-.|--+-=.||+|.-.-.++|.+
T Consensus 14 Ivt~~~~l~~~~G~~l~~~la~~l---~l~~~~F--------~~isV~g~-aVTFrV~~N~~n~taadVA~~a~~ 76 (99)
T 4hti_A 14 IVTDRDPLRPEEGRRLVEDVARLL---QVPSSAF--------ADVEVLGP-AVTFKVSANVQNVTTEDVEKATVD 76 (99)
T ss_dssp EEESCSSCCHHHHHHHHHHHHHHT---TCCGGGE--------EEEEEETT-EEEEEECCCTTCCCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHh---CCchhhe--------eeeeecCc-eEEEEeccCCCCCCHHHHHHHHHH
Confidence 899999999999999999998887 4555443 34554332 111223445689998876666655
No 12
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=31.57 E-value=20 Score=27.27 Aligned_cols=32 Identities=13% Similarity=0.095 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCccccccCCC
Q psy3805 8 DLSDGEEAAALVKELILILQCLGTSTCKMQEG 39 (139)
Q Consensus 8 d~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G 39 (139)
.|.|++||.+|.+.++..+..+.......++|
T Consensus 94 nF~Se~eA~~F~~~~~~ale~l~~~~~~~~~~ 125 (168)
T 1i2h_A 94 GFSSEHHLSKFAEKFQEFKEAARLAKEKSQEK 125 (168)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHHHC--C
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 47899999999999999999998776664443
No 13
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=30.31 E-value=42 Score=23.25 Aligned_cols=26 Identities=23% Similarity=0.150 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCcccc
Q psy3805 9 LSDGEEAAALVKELILILQCLGTSTC 34 (139)
Q Consensus 9 ~~s~eEA~~~~~~L~~iL~~lgvs~g 34 (139)
+.+|+|++.|++.|++....+.-.-+
T Consensus 5 ~~dpeElr~Fa~~L~~F~d~Lq~~~~ 30 (94)
T 3fx7_A 5 QMDTEEVREFVGHLERFKELLREEVN 30 (94)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999988875543
No 14
>4g7x_B TOLA protein; membrane, protein binding-protein binding complex; 1.44A {Vibrio cholerae}
Probab=29.67 E-value=62 Score=23.31 Aligned_cols=38 Identities=8% Similarity=-0.004 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccC
Q psy3805 13 EEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRR 52 (139)
Q Consensus 13 eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~ 52 (139)
.|+..|...|++.++..=.-+.++ .| +.|.++|.+.+.
T Consensus 46 sev~~Y~a~I~~~Iq~nw~~p~~~-~G-~~c~v~I~L~p~ 83 (138)
T 4g7x_B 46 SEVGRYGAIYTQLIRQNLLVEDSF-RG-KQCRVNLKLIPT 83 (138)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCGGG-TT-CCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcc-CC-CEEEEEEEEcCC
Confidence 566789999998887765555556 46 599999999997
No 15
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=29.65 E-value=57 Score=17.34 Aligned_cols=19 Identities=21% Similarity=0.100 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhCc
Q psy3805 13 EEAAALVKELILILQCLGT 31 (139)
Q Consensus 13 eEA~~~~~~L~~iL~~lgv 31 (139)
-||+.|+..|.+.|+.-.+
T Consensus 7 iearkyleqlhrklknckv 25 (26)
T 1xkm_B 7 IEARKYLEQLHRKLKNCKV 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 5899999999998876543
No 16
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=28.68 E-value=26 Score=32.09 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=24.0
Q ss_pred CeEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy3805 1 MELVFDPDLSDGEEAAALVKELILILQCL 29 (139)
Q Consensus 1 iEIVTePd~~s~eEA~~~~~~L~~iL~~l 29 (139)
||++|.| ..|.+||..++..|+..+...
T Consensus 63 lE~iTpv-~~~~~~~~~~L~~l~~~~~~~ 90 (757)
T 3ln7_A 63 LELITPP-TKKLEDTFRWLSVIHEVVQRS 90 (757)
T ss_dssp EEEEEEE-ESSHHHHHHHHHHHHHHHHHH
T ss_pred eeeeCcC-CCCHHHHHHHHHHHHHHHHHH
Confidence 6999954 577999999999999998765
No 17
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=26.45 E-value=97 Score=20.94 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhCccc
Q psy3805 10 SDGEEAAALVKELILILQCLGTST 33 (139)
Q Consensus 10 ~s~eEA~~~~~~L~~iL~~lgvs~ 33 (139)
.+-++|++.+.-+.++|+.+|--|
T Consensus 57 endeqakelleliarllqklgykd 80 (96)
T 2jvf_A 57 ENDEQAKELLELIARLLQKLGYKD 80 (96)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCSE
T ss_pred cChHHHHHHHHHHHHHHHHhCCCc
Confidence 467899999999999999999764
No 18
>1k8v_A Neuropeptide F; moniezia expansa, NPF, unknown function; NMR {Synthetic} SCOP: j.6.1.1
Probab=25.43 E-value=32 Score=20.43 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=18.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhC
Q psy3805 8 DLSDGEEAAALVKELILILQCLG 30 (139)
Q Consensus 8 d~~s~eEA~~~~~~L~~iL~~lg 30 (139)
-|.|+++...|+++|..-..-.|
T Consensus 13 ~F~s~~~l~~YL~~LneYyai~G 35 (40)
T 1k8v_A 13 VLDNKAALRDYLRQINEYFAIIG 35 (40)
T ss_dssp SCSSCSHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHhc
Confidence 68899999999999987665443
No 19
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=24.57 E-value=1.6e+02 Score=19.64 Aligned_cols=76 Identities=11% Similarity=0.175 Sum_probs=40.2
Q ss_pred ecCCCCCCHHHHHHHH-HHHHHHHHHhC-ccccc----cCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHH
Q psy3805 4 VFDPDLSDGEEAAALV-KELILILQCLG-TSTCK----MQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVN 77 (139)
Q Consensus 4 VTePd~~s~eEA~~~~-~~L~~iL~~lg-vs~g~----me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~ 77 (139)
||.-.+.-.+...+|+ ++|.++-+|.+ +.++. .+.+..+|++.|.+.+ + --++|=.+=.=+.+|..|++
T Consensus 5 I~g~~ie~t~alr~~ve~Kl~kL~k~~d~i~~~~V~l~~e~~~~~~eitv~~~G--~---~l~ae~~~~d~yaAID~a~d 79 (101)
T 3v26_X 5 ITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNG--G---EIHASAEGQDMYAAIDGLID 79 (101)
T ss_dssp EECSSSCCCHHHHHHHHHHHHHHHTTCSCCCCEEEEEEECSSCEEEEEEECSTT--C---CEEEEECCSSSSHHHHHHHH
T ss_pred EEEecccCCHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEcCCCEEEEEEEEcCC--c---eEEEEEecCCHHHHHHHHHH
Confidence 4567778888888888 45666555553 22111 1334555555555432 1 12455555444555555543
Q ss_pred HHHHHHHH
Q psy3805 78 FEIVRQVA 85 (139)
Q Consensus 78 yE~~RQ~~ 85 (139)
-+.||..
T Consensus 80 -kLerQLr 86 (101)
T 3v26_X 80 -KLARQLT 86 (101)
T ss_dssp -HHHHHHH
T ss_pred -HHHHHHH
Confidence 3455543
No 20
>2adl_A CCDA; ribbon-helix-helix, DNA binding protein; NMR {Escherichia coli} PDB: 2adn_A 2h3a_A 2h3c_A
Probab=23.80 E-value=20 Score=23.36 Aligned_cols=69 Identities=10% Similarity=-0.053 Sum_probs=45.5
Q ss_pred eeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHHHHHHH--HHHcCCeeecccceeEcCCCeeeccccCCCCCCC
Q psy3805 42 RVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEIVRQVA--LLEQGGVVVNETRAYDAATKRTVSMRDKENIQVK 119 (139)
Q Consensus 42 R~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~~RQ~~--~l~~G~~v~~ETR~~d~~~~~T~~~R~KE~~~DY 119 (139)
+--+||+|... +-...+=.|+|==..++.||..++.++.. .++......++-..|.+.-|. .+.+|
T Consensus 2 kk~~nlti~~~----L~~~a~~~~iN~S~~l~~aL~~~ir~~~~~~w~~En~~ai~~~n~~~e~~G~--------f~de~ 69 (72)
T 2adl_A 2 KQRITVTVDSD----SYQLLKAYDVNISGLVSTTMQNEARRLRAERWKVENQEGMVEVARFIEMNGS--------FADEN 69 (72)
T ss_dssp CCEEEEECSSS----THHHHHHTTCCCHHHHHHHHHHHHHHCSSCCCSSCCCCCCCCCCCSCSCSCC--------CSSSC
T ss_pred CCceEEeeCHH----HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------ChHhc
Confidence 33577887653 33456667889889999999999988763 223344556666667766662 35666
Q ss_pred CCC
Q psy3805 120 PRS 122 (139)
Q Consensus 120 r~~ 122 (139)
|.+
T Consensus 70 R~f 72 (72)
T 2adl_A 70 KDW 72 (72)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 21
>2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7
Probab=21.32 E-value=66 Score=27.56 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCccc
Q psy3805 9 LSDGEEAAALVKELILILQCLGTST 33 (139)
Q Consensus 9 ~~s~eEA~~~~~~L~~iL~~lgvs~ 33 (139)
+.+|+||..|++..++.+...|+..
T Consensus 187 ~T~PeeA~~Fve~~~~~~~~tGvd~ 211 (420)
T 2fiq_A 187 ITHVEDAANTLRTHQKAFIARGLTE 211 (420)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCc
Confidence 7999999999999999999888654
No 22
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=20.82 E-value=11 Score=27.00 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHhCccccccCC--CceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHH
Q psy3805 12 GEEAAALVKELILILQCLGTSTCKMQE--GALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNF 78 (139)
Q Consensus 12 ~eEA~~~~~~L~~iL~~lgvs~g~me~--G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~y 78 (139)
.+++.++++.|+..|. +...+.++++ .+.|-.+|--+... ...-.+=++.||+.+..||+.
T Consensus 17 ~~dT~~Vv~~lr~~l~-l~~d~~~~~~a~~~ar~~ind~vsrY-----Rr~~~v~g~~Sf~tm~tAlNa 79 (115)
T 2kmf_A 17 SQDTLTVIATLREAID-LPQDAPNRQEVQDTARGQINDYISRY-----RRKGDAGGLKSFTTMQTALNS 79 (115)
T ss_dssp HHHHHHHHHHHHHHHH-SCTTCTTHHHHHHHHHHHHHHHHHHT-----HHHHCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CCCCCccHHHHHHHHHHHHHHHHHHh-----cCCCCccccchHHHHHHHHHH
Confidence 4788999999999987 6666656543 45666666665443 112356789999999999863
No 23
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=20.68 E-value=70 Score=22.55 Aligned_cols=24 Identities=17% Similarity=0.451 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCc
Q psy3805 8 DLSDGEEAAALVKELILILQCLGT 31 (139)
Q Consensus 8 d~~s~eEA~~~~~~L~~iL~~lgv 31 (139)
.|.|.+||..|.+.+...|..+.-
T Consensus 91 ~F~se~eA~~F~~~~~~al~~~~~ 114 (130)
T 1qc6_A 91 NFASKEEATTFSNAMLFALNIMNS 114 (130)
T ss_dssp EESCHHHHHHHHHHHHHHHHHTC-
T ss_pred ecCCHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999988654
Done!