RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3805
(139 letters)
>gnl|CDD|235489 PRK05477, gatB, aspartyl/glutamyl-tRNA amidotransferase subunit B;
Validated.
Length = 474
Score = 169 bits (430), Expect = 2e-51
Identities = 56/114 (49%), Positives = 75/114 (65%)
Query: 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
+E+V +PD+ EEA A +K+L IL+ LG S M+EG+LR DANVSV+ + + GTR
Sbjct: 151 IEIVSEPDMRSPEEARAYLKKLRSILRYLGISDGNMEEGSLRCDANVSVRPKGQEEFGTR 210
Query: 61 SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKE 114
E+KN+ S R V A+ +EI RQ+ +LE GG VV ETR +D T SMR KE
Sbjct: 211 VEIKNLNSFRFVEKAIEYEIERQIEILESGGEVVQETRLFDEDKGETRSMRSKE 264
>gnl|CDD|217294 pfam02934, GatB_N, GatB/GatE catalytic domain. This domain is
found in the GatB and GatE proteins.
Length = 288
Score = 162 bits (413), Expect = 7e-51
Identities = 58/115 (50%), Positives = 77/115 (66%)
Query: 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
+E+V +PD+ EEA A +K+L IL+ LG S M+EG+LR DANVSV+ + + GTR
Sbjct: 149 IEIVTEPDIRSPEEARAYLKKLRQILRYLGVSDGNMEEGSLRCDANVSVRPKGSEEFGTR 208
Query: 61 SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKEN 115
E+KN+ S R V A+ +EI RQ+ LLE+GG V ETR +D T TVSMR KE
Sbjct: 209 VEIKNLNSFRFVEKAIEYEIERQIELLEEGGKVPQETRLWDEDTGETVSMRSKEG 263
>gnl|CDD|223142 COG0064, GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit
(PET112 homolog) [Translation, ribosomal structure and
biogenesis].
Length = 483
Score = 161 bits (411), Expect = 1e-48
Identities = 57/115 (49%), Positives = 78/115 (67%)
Query: 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
+E+V +PD+ EEA A +K+L IL+ LG S M+EG++R DANVSV+ + + GTR
Sbjct: 156 IEIVTEPDIRSPEEARAYLKKLRSILRYLGISDGNMEEGSMRCDANVSVRPKGQEEFGTR 215
Query: 61 SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKEN 115
E+KN+ S R V A+ +EI RQ+ LLE GG + ETR +D AT +TVSMR KE
Sbjct: 216 VEIKNLNSFRNVEKAIEYEIQRQIELLESGGEIEQETRRFDEATGKTVSMRSKEE 270
>gnl|CDD|232843 TIGR00133, gatB, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase,
B subunit. The heterotrimer GatABC is responsible for
transferring the NH2 group that converts Glu to Gln, or
Asp to Asn after the Glu or Asp has been ligated to the
tRNA for Gln or Asn, respectively. In Lactobacillus,
GatABC is responsible only for tRNA(Gln). In the
Archaea, GatABC is responsible only for tRNA(Asn), while
GatDE is responsible for tRNA(Gln). In lineages that
include Thermus, Chlamydia, or Acidithiobacillus, the
GatABC complex catalyzes both [Protein synthesis, tRNA
aminoacylation].
Length = 478
Score = 134 bits (340), Expect = 2e-38
Identities = 52/115 (45%), Positives = 75/115 (65%)
Query: 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
+E+V PD++ +EA A +K+L IL+ LG S ++EG++R D NVS++ + LGTR
Sbjct: 154 IEIVTKPDINSPKEARAFLKKLRQILRYLGISDGNLEEGSMRCDVNVSIRLKGQEHLGTR 213
Query: 61 SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKEN 115
E+KNI S +G+ A+ +EI RQV L +G VV ETR +D + TVSMR KE
Sbjct: 214 VEIKNINSFKGIEKAIKYEIERQVKALIRGEEVVQETRTFDEKSNITVSMRSKET 268
>gnl|CDD|215400 PLN02751, PLN02751, glutamyl-tRNA(Gln) amidotransferase.
Length = 544
Score = 106 bits (265), Expect = 1e-27
Identities = 49/116 (42%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
Query: 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
+E+V +PD+ G EAA EL +++ LG S MQEG+LR D NVS++ + GT+
Sbjct: 217 LEIVSEPDMRTGIEAAEYGAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQEEFGTK 276
Query: 61 SEVKNIGSIRGVANAVNFEIVRQVALLEQGGV--VVNETRAYDAATKRTVSMRDKE 114
E+KN+ S ++ A++FEI RQ+ L QG +V ETR +D ++TV+MR KE
Sbjct: 277 VEIKNMNSFSAMSRAIDFEISRQILLHRQGQGDEIVQETRLWDEGAQKTVTMRKKE 332
>gnl|CDD|213509 TIGR00134, gatE_arch, glutamyl-tRNA(Gln) amidotransferase, subunit
E. This peptide is found only in the Archaea. It is
paralogous to the gatB-encoded subunit of Glu-tRNA(Gln)
amidotransferase. The GatABC system operates in many
bacteria to convert Glu-tRNA(Gln) into Gln-tRNA(Gln).
However, the homologous system in archaea instead
converts Asp-tRNA(Asn) to Asn-tRNA(Asn). Glu-tRNA(Gln)
is converted to Gln-tRNA(Gln) by a heterodimeric
amidotransferase of GatE (this protein) and GatD. The
Archaea have an Asp-tRNA(Asn) amidotransferase instead
of an Asp--tRNA ligase, but the genes have not been
identified. It is likely that this protein replaces gatB
in Asp-tRNA(Asn) amidotransferase but that both enzymes
share gatA [Protein synthesis, tRNA aminoacylation].
Length = 620
Score = 39.1 bits (91), Expect = 3e-04
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
+E+ DPD+SD + A + + IL+ T K G +R D N+S+ + G R
Sbjct: 183 VEITTDPDISDPQMAKEVAYRIGQILR--STGKVKRGLGTIRQDLNISI------RDGAR 234
Query: 61 SEVKNIGSIRGVANAVNFEIVRQVALLE 88
EVK + + + V E+ RQ+ LL+
Sbjct: 235 VEVKGVQDLDLIPKIVEREVKRQLNLLK 262
>gnl|CDD|225309 COG2511, GatE, Archaeal Glu-tRNAGln amidotransferase subunit E
(contains GAD domain) [Translation, ribosomal structure
and biogenesis].
Length = 631
Score = 34.6 bits (80), Expect = 0.011
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
Query: 2 ELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRS 61
E+ +PD+ E+A + + + IL+ G K G +R D NVS++ G R
Sbjct: 187 EISTEPDIRSPEQAREVAERIGYILRSTGKV--KRGLGTIRQDVNVSIKG------GARV 238
Query: 62 EVKNIGSIRGVANAVNFEIVRQVALL-------EQGGVVVNE 96
E+K + + + + V +E+ RQ+ LL E+GG V+E
Sbjct: 239 EIKGVQDLDLIPDVVEYEVERQLNLLKIRDELKERGGADVSE 280
>gnl|CDD|235205 PRK04028, PRK04028, glutamyl-tRNA(Gln) amidotransferase subunit E;
Validated.
Length = 630
Score = 30.9 bits (71), Expect = 0.18
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 12/85 (14%)
Query: 6 DPDLSDGEEAAALVKELILILQCLGTSTCKMQE--GALRVDANVSVQRRTDTKLGTRSEV 63
PD+ E+A KE+ L + L ST K++ G +R D NVS+ G R E+
Sbjct: 191 APDIHSPEQA----KEVALKIGMLLRSTGKVKRGLGTIRQDVNVSIAG------GARVEI 240
Query: 64 KNIGSIRGVANAVNFEIVRQVALLE 88
K + + + V +E+ RQ+ LL+
Sbjct: 241 KGVQKLDLIPKVVEYEVQRQLNLLK 265
>gnl|CDD|148462 pfam06859, Bin3, Bicoid-interacting protein 3 (Bin3). This family
represents a conserved region of approximately 120
residues within eukaryotic Bicoid-interacting protein 3
(Bin3). Bin3, which shows similarity to a number of
protein methyltransferases that modify RNA-binding
proteins, interacts with Bicoid, which itself directs
pattern formation in the early Drosophila embryo. The
interaction might allow Bicoid to switch between its
dual roles in transcription and translation. Note that
family members contain a conserved HLN motif.
Length = 110
Score = 26.3 bits (58), Expect = 3.2
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 82 RQVALLEQGGVVVNETRAYDAATKR----TVSMRDKENIQVKPRSHFKTLSLS 130
R LL GG+++ E + +D+ KR ++ E I++KP F+ LS
Sbjct: 29 RIYRLLRPGGILILEPQPWDSYKKRKKLSETIYKNYERIKLKP-DQFEEYLLS 80
>gnl|CDD|215390 PLN02733, PLN02733, phosphatidylcholine-sterol O-acyltransferase.
Length = 440
Score = 26.5 bits (59), Expect = 5.0
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 100 YDAATKRTVSMRDKENIQV 118
YD T +TVS+ K I V
Sbjct: 65 YDPKTGKTVSLDPKTEIVV 83
>gnl|CDD|189781 pfam00948, Flavi_NS1, Flavivirus non-structural Protein NS1. The
NS1 protein is well conserved amongst the flaviviruses.
It contains 12 cysteines, and undergoes glycosylation in
a similar manner to other NS proteins. Mutational
analysis has strongly implied a role for NS1 in the
early stages of RNA replication.
Length = 355
Score = 26.2 bits (58), Expect = 6.6
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 70 RGVANAVNFEIVRQVALLEQGG----VVVNETRAYDAATKRTVSMRDKENIQVKPRSHFK 125
R +A+ +N A+L + VVV +T+ RT+S +E ++ +S K
Sbjct: 68 RSIADELN-------AILSENEVDLTVVVGKTKGVYERGPRTLSKTIEE-LKYSWKSWGK 119
Query: 126 TLSLSLTLLNL 136
+L S L N
Sbjct: 120 SLLFSPELANS 130
>gnl|CDD|237961 PRK15408, PRK15408, autoinducer 2-binding protein lsrB;
Provisional.
Length = 336
Score = 25.9 bits (57), Expect = 9.0
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 37 QEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAV 76
Q+G + V + ++ +G +V IG + N+V
Sbjct: 266 QQGKISVYVANELLKKGKLNVGDSLDVPGIGKVEVSPNSV 305
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.132 0.355
Gapped
Lambda K H
0.267 0.0664 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,608,362
Number of extensions: 563020
Number of successful extensions: 460
Number of sequences better than 10.0: 1
Number of HSP's gapped: 459
Number of HSP's successfully gapped: 19
Length of query: 139
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 52
Effective length of database: 7,078,804
Effective search space: 368097808
Effective search space used: 368097808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)